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HCoop / jackhill / guix / guix.git / history

[jackhill/guix/guix.git] / gnu / packages / bioinformatics.scm

2020-11-20	Maxim Cournoyer	Merge branch 'version-1.2.0' into master.	blob \| commitdiff \| raw
2020-11-18	Tobias Geerinckx...	Merge remote-tracking branch 'upstream/version-1.2.0'	blob \| commitdiff \| raw
2020-11-17	Maxim Cournoyer	Merge remote-tracking branch 'origin/version-1.2.0...	blob \| commitdiff \| raw
2020-11-15	Ricardo Wurmus	gnu: methyldackel: Update to 0.5.1.	blob \| commitdiff \| raw
2020-11-13	Ludovic Courtès	Merge branch 'version-1.2.0' of ssh://git.sv.gnu.org...	blob \| commitdiff \| raw \| diff to current
2020-11-13	Maxim Cournoyer	gnu: python-pysam: Update to version 0.16.0.1.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Roel Janssen	gnu: Fix build for python-pysam.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Roel Janssen	gnu: Add bcftools-1.9.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Roel Janssen	gnu: bedtools: Use samtools-1.9.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Roel Janssen	gnu: Add samtools-1.9.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Roel Janssen	gnu: Add htslib-1.9.	blob \| commitdiff \| raw \| diff to current
2020-11-12	Ludovic Courtès	Merge branch 'version-1.2.0'	blob \| commitdiff \| raw \| diff to current
2020-11-09	Efraim Flashner	gnu: macs: Remove generated code.	blob \| commitdiff \| raw \| diff to current
2020-11-09	Efraim Flashner	gnu: macs: Update check phase.	blob \| commitdiff \| raw \| diff to current
2020-11-09	Efraim Flashner	gnu: macs: Update source, home-page URIs.	blob \| commitdiff \| raw \| diff to current
2020-10-29	Roel Janssen	gnu: Update samtools to 1.11.	blob \| commitdiff \| raw \| diff to current
2020-10-29	Roel Janssen	gnu: Update bcftools to 1.11.	blob \| commitdiff \| raw \| diff to current
2020-10-29	Roel Janssen	gnu: Update htslib to 1.11.	blob \| commitdiff \| raw \| diff to current
2020-10-23	Ludovic Courtès	gnu: imp: Update to 2.13.0.	blob \| commitdiff \| raw \| diff to current
2020-10-07	Roel Janssen	gnu: htslib: Enable support for custom URI schemes.	blob \| commitdiff \| raw \| diff to current
2020-10-06	Ricardo Wurmus	gnu: r-gqtlbase: Update to 1.20.4.	blob \| commitdiff \| raw \| diff to current
2020-10-06	Ricardo Wurmus	gnu: r-rhdf5: Update to 2.32.3.	blob \| commitdiff \| raw \| diff to current
2020-10-06	Ricardo Wurmus	gnu: r-biocstyle: Update to 2.16.1.	blob \| commitdiff \| raw \| diff to current
2020-09-25	Mădălin Ionel Patrașcu	gnu: mafft: Update to 7.471.	blob \| commitdiff \| raw \| diff to current
2020-09-22	Nicolas Goaziou	gnu: mafft: Use HTTPS home page URI.	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-fithic: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-hitc: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-hdf5array: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-rhdf5lib: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-beachmat: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-singlecellexperiment: Move to (gnu packages...	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-scater: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-scran: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2020-09-14	zimoun	gnu: r-delayedmatrixstats: Move to (gnu packages biocon...	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-absfiltergsea: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-diversitree: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-phangorn: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-seurat: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-maldiquant: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-seqminer: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-qtl2: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-11	zimoun	gnu: r-qtl: Move to (gnu packages cran).	blob \| commitdiff \| raw \| diff to current
2020-09-10	Roel Janssen	gnu: Move r-bisquerna.	blob \| commitdiff \| raw \| diff to current
2020-09-09	Ricardo Wurmus	Revert "gnu: Add r-loomr."	blob \| commitdiff \| raw \| diff to current
2020-09-09	Roel Janssen	gnu: Add r-bisquerna.	blob \| commitdiff \| raw \| diff to current
2020-09-09	Roel Janssen	gnu: Add r-loomr.	blob \| commitdiff \| raw \| diff to current
2020-09-05	Andreas Enge	gnu: seqmagick: Update to 0.8.0.	blob \| commitdiff \| raw \| diff to current
2020-08-30	Efraim Flashner	gnu: delly: Update to 0.8.3.	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: vcflib: Install pkgconfig file.	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: vcflib: Use shared libraries.	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: fastahack: Install pkgconfig file.	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: fastahack: Build and install shared library and...	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: smithwaterman: Install pkgconfig file.	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: smithwaterman: Build and install shared library...	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: tabixpp: Install pkgconfig file.	blob \| commitdiff \| raw \| diff to current
2020-08-27	Efraim Flashner	gnu: tabixpp: Build and install shared library and...	blob \| commitdiff \| raw \| diff to current
2020-08-20	Ricardo Wurmus	gnu: r-complexheatmap: Update to 2.4.3.	blob \| commitdiff \| raw \| diff to current
2020-08-20	Ricardo Wurmus	gnu: r-gage: Update to 2.38.3.	blob \| commitdiff \| raw \| diff to current
2020-08-20	Ricardo Wurmus	gnu: r-annotationhub: Update to 2.20.2.	blob \| commitdiff \| raw \| diff to current
2020-08-20	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.14.1.	blob \| commitdiff \| raw \| diff to current
2020-08-20	Ricardo Wurmus	gnu: r-annotationdbi: Update to 1.50.3.	blob \| commitdiff \| raw \| diff to current
2020-08-20	Ricardo Wurmus	gnu: r-biocviews: Update to 1.56.2.	blob \| commitdiff \| raw \| diff to current
2020-08-19	Ricardo Wurmus	gnu: pigx-chipseq: Update to 0.0.43.	blob \| commitdiff \| raw \| diff to current
2020-08-18	Ricardo Wurmus	gnu: bowtie1: Add missing Python input.	blob \| commitdiff \| raw \| diff to current
2020-08-16	Ricardo Wurmus	gnu: pigx-bsseq: Update to 0.1.2.	blob \| commitdiff \| raw \| diff to current
2020-08-16	Ricardo Wurmus	gnu: pigx-scrnaseq: Use statically linked Pandoc.	blob \| commitdiff \| raw \| diff to current
2020-08-16	Ricardo Wurmus	gnu: pigx-bsseq: Use statically linked Pandoc.	blob \| commitdiff \| raw \| diff to current
2020-08-16	Ricardo Wurmus	gnu: pigx-chipseq: Use statically linked Pandoc.	blob \| commitdiff \| raw \| diff to current
2020-08-16	Ricardo Wurmus	gnu: pigx-rnaseq: Use statically linked Pandoc.	blob \| commitdiff \| raw \| diff to current
2020-08-16	Ricardo Wurmus	gnu: r-rcas: Use pandoc instead of ghc-pandoc.	blob \| commitdiff \| raw \| diff to current
2020-08-15	Ricardo Wurmus	gnu: hisat2: Use pandoc instead of ghc-pandoc.	blob \| commitdiff \| raw \| diff to current
2020-08-15	Ricardo Wurmus	Merge remote-tracking branch 'origin/master' into wip...	blob \| commitdiff \| raw \| diff to current
2020-08-12	Ricardo Wurmus	gnu: tophat: Hide default GCC.	blob \| commitdiff \| raw \| diff to current
2020-08-12	Ricardo Wurmus	gnu: r-seurat: Update to 3.2.0.	blob \| commitdiff \| raw \| diff to current
2020-08-10	Ricardo Wurmus	gnu: Add phast.	blob \| commitdiff \| raw \| diff to current
2020-08-07	Ricardo Wurmus	gnu: clipper: Update to 2.0.	blob \| commitdiff \| raw \| diff to current
2020-07-30	Jakub Kądziołka	gnu: paml: Fix build.	blob \| commitdiff \| raw \| diff to current
2020-07-19	Jakub Kądziołka	gnu: r-rhdf5lib: Fix libsz substitution.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Tobias Geerinckx...	gnu: Use HTTPS for mdc-berlin.de home pages.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Tobias Geerinckx...	gnu: Use HTTPS for biojava.org home pages.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Ricardo Wurmus	gnu: r-rhdf5lib: Update to 1.10.1.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Ricardo Wurmus	gnu: r-qtl2: Update to 0.22-11.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.40.1.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Ricardo Wurmus	gnu: r-summarizedexperiment: Update to 1.18.2.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Ricardo Wurmus	gnu: r-delayedmatrixstats: Update to 1.10.1.	blob \| commitdiff \| raw \| diff to current
2020-07-16	Ricardo Wurmus	gnu: r-rhdf5: Update to 2.32.2.	blob \| commitdiff \| raw \| diff to current
2020-07-12	Ludovic Courtès	gnu: Remove ".git" from "https://github/…/….git".	blob \| commitdiff \| raw \| diff to current
2020-07-02	Ricardo Wurmus	gnu: r-annotationdbi: Update to 1.50.1.	blob \| commitdiff \| raw \| diff to current
2020-06-30	Ricardo Wurmus	gnu: blast+: Update to 2.10.1.	blob \| commitdiff \| raw \| diff to current
2020-06-28	Efraim Flashner	gnu: r-qtl2: Update synopsis, description.	blob \| commitdiff \| raw \| diff to current
2020-06-28	Efraim Flashner	gnu: r-qtl2: Update to 0.22-8.	blob \| commitdiff \| raw \| diff to current
2020-06-28	Ricardo Wurmus	gnu: r-scater: Update to 1.16.2.	blob \| commitdiff \| raw \| diff to current
2020-06-28	Ricardo Wurmus	gnu: r-biocviews: Update to 1.56.1.	blob \| commitdiff \| raw \| diff to current
2020-06-28	Ricardo Wurmus	gnu: r-dexseq: Update to 1.34.1.	blob \| commitdiff \| raw \| diff to current
2020-06-23	Efraim Flashner	gnu: miniasm: Make sure all phases return #t.	blob \| commitdiff \| raw \| diff to current
2020-06-23	Efraim Flashner	gnu: miniasm: Don't use unstable tarball.	blob \| commitdiff \| raw \| diff to current
2020-06-22	Pierre Langlois	gnu: python-plotly: Update to 4.8.1.	blob \| commitdiff \| raw \| diff to current
2020-06-22	Pierre Langlois	gnu: python-pandas: Update to 1.0.5.	blob \| commitdiff \| raw \| diff to current
2020-06-22	Pierre Langlois	gnu: deeptools: Deprecate in favor of python-deeptools.	blob \| commitdiff \| raw \| diff to current
2020-06-22	Ricardo Wurmus	gnu: r-hdf5array: Update to 1.16.1.	blob \| commitdiff \| raw \| diff to current
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jackhill's copy of GNU Guix: https://guix.gnu.org/

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