Commit | Line | Data |
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8f8b2451 | 1 | ;;; GNU Guix --- Functional package management for GNU |
06ed5982 | 2 | ;;; Copyright © 2013, 2014 Andreas Enge <andreas@enge.fr> |
da95c817 | 3 | ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org> |
668c06ac | 4 | ;;; Copyright © 2014 John Darrington <jmd@gnu.org> |
f5d5a346 | 5 | ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org> |
8f8b2451 AE |
6 | ;;; |
7 | ;;; This file is part of GNU Guix. | |
8 | ;;; | |
9 | ;;; GNU Guix is free software; you can redistribute it and/or modify it | |
10 | ;;; under the terms of the GNU General Public License as published by | |
11 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
12 | ;;; your option) any later version. | |
13 | ;;; | |
14 | ;;; GNU Guix is distributed in the hope that it will be useful, but | |
15 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
17 | ;;; GNU General Public License for more details. | |
18 | ;;; | |
19 | ;;; You should have received a copy of the GNU General Public License | |
20 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. | |
21 | ||
22 | (define-module (gnu packages maths) | |
23 | #:use-module (gnu packages) | |
24 | #:use-module ((guix licenses) | |
25 | #:renamer (symbol-prefix-proc 'license:)) | |
26 | #:use-module (guix packages) | |
27 | #:use-module (guix download) | |
0e2672ae | 28 | #:use-module (guix utils) |
da95c817 | 29 | #:use-module (guix build-system cmake) |
c9dfa3c7 | 30 | #:use-module (guix build-system gnu) |
3de01d3f EB |
31 | #:use-module (gnu packages algebra) |
32 | #:use-module (gnu packages bison) | |
33 | #:use-module (gnu packages cmake) | |
c9dfa3c7 | 34 | #:use-module (gnu packages compression) |
668c06ac | 35 | #:use-module (gnu packages curl) |
57e544e8 | 36 | #:use-module (gnu packages elf) |
3de01d3f | 37 | #:use-module (gnu packages flex) |
668c06ac | 38 | #:use-module (gnu packages fltk) |
f3929800 | 39 | #:use-module (gnu packages fontutils) |
1dba6407 | 40 | #:use-module (gnu packages gettext) |
da95c817 | 41 | #:use-module (gnu packages gcc) |
73fed4f8 | 42 | #:use-module (gnu packages gd) |
668c06ac | 43 | #:use-module (gnu packages ghostscript) |
f3929800 | 44 | #:use-module (gnu packages gtk) |
668c06ac JD |
45 | #:use-module (gnu packages less) |
46 | #:use-module (gnu packages xorg) | |
47 | #:use-module (gnu packages gl) | |
b92eee75 | 48 | #:use-module (gnu packages multiprecision) |
668c06ac | 49 | #:use-module (gnu packages pcre) |
c9dfa3c7 AE |
50 | #:use-module (gnu packages perl) |
51 | #:use-module (gnu packages pkg-config) | |
da95c817 | 52 | #:use-module (gnu packages python) |
c9dfa3c7 | 53 | #:use-module (gnu packages readline) |
183e44ae | 54 | #:use-module (gnu packages tcsh) |
668c06ac | 55 | #:use-module (gnu packages texinfo) |
73fed4f8 | 56 | #:use-module (gnu packages texlive) |
c9dfa3c7 | 57 | #:use-module (gnu packages xml)) |
8f8b2451 AE |
58 | |
59 | (define-public units | |
60 | (package | |
61 | (name "units") | |
983815c8 | 62 | (version "2.11") |
8f8b2451 AE |
63 | (source (origin |
64 | (method url-fetch) | |
65 | (uri (string-append "mirror://gnu/units/units-" version | |
66 | ".tar.gz")) | |
67 | (sha256 (base32 | |
983815c8 | 68 | "1gjs3wc212aaiq4r76hx9nl1h3fa39n0ljwl9420d6ixl3rdmdjk")))) |
8f8b2451 AE |
69 | (build-system gnu-build-system) |
70 | (synopsis "Conversion between thousands of scales") | |
71 | (description | |
574e86f9 LC |
72 | "GNU Units converts numeric quantities between units of measure. It |
73 | can handle scale changes through adaptive usage of standard scale prefixes | |
74 | (micro-, kilo-, etc.). It can also handle nonlinear conversions such as | |
75 | Fahrenheit to Celsius. Its interpreter is powerful enough to be used | |
76 | effectively as a scientific calculator.") | |
8f8b2451 AE |
77 | (license license:gpl3+) |
78 | (home-page "http://www.gnu.org/software/units/"))) | |
c9dfa3c7 | 79 | |
88bd1804 AE |
80 | (define-public gsl |
81 | (package | |
82 | (name "gsl") | |
487da565 | 83 | (version "1.16") |
88bd1804 AE |
84 | (source |
85 | (origin | |
86 | (method url-fetch) | |
87 | (uri (string-append "mirror://gnu/gsl/gsl-" | |
88 | version ".tar.gz")) | |
89 | (sha256 | |
90 | (base32 | |
487da565 | 91 | "0lrgipi0z6559jqh82yx8n4xgnxkhzj46v96dl77hahdp58jzg3k")))) |
88bd1804 | 92 | (build-system gnu-build-system) |
71e0f288 | 93 | (arguments |
487da565 AE |
94 | `(#:parallel-tests? #f |
95 | #:phases | |
71e0f288 AE |
96 | (alist-replace |
97 | 'configure | |
98 | (lambda* (#:key target system outputs #:allow-other-keys #:rest args) | |
99 | (let ((configure (assoc-ref %standard-phases 'configure))) | |
100 | ;; disable numerically unstable test on i686, see thread at | |
101 | ;; http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html | |
102 | (if (string=? (or target system) "i686-linux") | |
103 | (substitute* "ode-initval2/Makefile.in" | |
104 | (("TESTS = \\$\\(check_PROGRAMS\\)") "TESTS ="))) | |
105 | (apply configure args))) | |
106 | %standard-phases))) | |
88bd1804 AE |
107 | (home-page "http://www.gnu.org/software/gsl/") |
108 | (synopsis "Numerical library for C and C++") | |
109 | (description | |
a22dc0c4 LC |
110 | "The GNU Scientific Library is a library for numerical analysis in C |
111 | and C++. It includes a wide range of mathematical routines, with over 1000 | |
112 | functions in total. Subject areas covered by the library include: | |
113 | differential equations, linear algebra, Fast Fourier Transforms and random | |
114 | numbers.") | |
88bd1804 AE |
115 | (license license:gpl3+))) |
116 | ||
b92eee75 AE |
117 | (define-public glpk |
118 | (package | |
119 | (name "glpk") | |
1f1c0aff | 120 | (version "4.54") |
b92eee75 AE |
121 | (source |
122 | (origin | |
123 | (method url-fetch) | |
124 | (uri (string-append "mirror://gnu/glpk/glpk-" | |
125 | version ".tar.gz")) | |
126 | (sha256 | |
127 | (base32 | |
1f1c0aff | 128 | "18gr2anv8gyps6j9f22k7li6w07glvww666sdqblvlq2hh3whwmb")))) |
b92eee75 AE |
129 | (build-system gnu-build-system) |
130 | (inputs | |
131 | `(("gmp" ,gmp))) | |
132 | (arguments | |
133 | `(#:configure-flags '("--with-gmp"))) | |
134 | (home-page "http://www.gnu.org/software/glpk/") | |
79c311b8 | 135 | (synopsis "GNU Linear Programming Kit, supporting the MathProg language") |
b92eee75 AE |
136 | (description |
137 | "GLPK is a C library for solving large-scale linear programming (LP), | |
138 | mixed integer programming (MIP), and other related problems. It supports the | |
139 | GNU MathProg modeling language, a subset of the AMPL language, and features a | |
140 | translator for the language. In addition to the C library, a stand-alone | |
141 | LP/MIP solver is included in the package.") | |
142 | (license license:gpl3+))) | |
143 | ||
c9dfa3c7 AE |
144 | (define-public pspp |
145 | (package | |
146 | (name "pspp") | |
e7d6f7bf | 147 | (version "0.8.2") |
c9dfa3c7 AE |
148 | (source |
149 | (origin | |
150 | (method url-fetch) | |
151 | (uri (string-append "mirror://gnu/pspp/pspp-" | |
152 | version ".tar.gz")) | |
153 | (sha256 | |
154 | (base32 | |
e7d6f7bf | 155 | "1w7h3dglgx0jlq1wb605b8pgfsk2vr1q2q2rj7bsajh9ihbcsixr")))) |
c9dfa3c7 AE |
156 | (build-system gnu-build-system) |
157 | (inputs | |
f3929800 AE |
158 | `(("cairo" ,cairo) |
159 | ("fontconfig" ,fontconfig) | |
1dba6407 | 160 | ("gettext" ,gnu-gettext) |
c9dfa3c7 AE |
161 | ("gsl" ,gsl) |
162 | ("libxml2" ,libxml2) | |
f3929800 | 163 | ("pango" ,pango) |
c9dfa3c7 | 164 | ("readline" ,readline) |
e6a5ce8e JD |
165 | ("gtk" ,gtk+-2) |
166 | ("gtksourceview" ,gtksourceview) | |
c9dfa3c7 AE |
167 | ("zlib" ,zlib))) |
168 | (native-inputs | |
169 | `(("perl" ,perl) | |
170 | ("pkg-config" ,pkg-config))) | |
c9dfa3c7 AE |
171 | (home-page "http://www.gnu.org/software/pspp/") |
172 | (synopsis "Statistical analysis") | |
173 | (description | |
79c311b8 LC |
174 | "GNU PSPP is a statistical analysis program. It can perform |
175 | descriptive statistics, T-tests, linear regression and non-parametric tests. | |
176 | It features both a graphical interface as well as command-line input. PSPP is | |
177 | designed to interoperate with Gnumeric, LibreOffice and OpenOffice. Data can | |
178 | be imported from spreadsheets, text files and database sources and it can be | |
179 | output in text, PostScript, PDF or HTML.") | |
c9dfa3c7 | 180 | (license license:gpl3+))) |
da95c817 NK |
181 | |
182 | (define-public lapack | |
183 | (package | |
184 | (name "lapack") | |
566146ab | 185 | (version "3.5.0") |
da95c817 NK |
186 | (source |
187 | (origin | |
188 | (method url-fetch) | |
189 | (uri (string-append "http://www.netlib.org/lapack/lapack-" | |
190 | version ".tgz")) | |
191 | (sha256 | |
192 | (base32 | |
566146ab | 193 | "0lk3f97i9imqascnlf6wr5mjpyxqcdj73pgj97dj2mgvyg9z1n4s")))) |
da95c817 NK |
194 | (build-system cmake-build-system) |
195 | (home-page "http://www.netlib.org/lapack/") | |
57e544e8 | 196 | (native-inputs `(("patchelf" ,patchelf))) ;for augment-rpath |
da95c817 NK |
197 | (inputs `(("fortran" ,gfortran-4.8) |
198 | ("python" ,python-2))) | |
199 | (arguments | |
06ed5982 | 200 | `(#:configure-flags '("-DBUILD_SHARED_LIBS:BOOL=YES") |
da95c817 | 201 | #:phases (alist-cons-before |
6a995754 LC |
202 | 'check 'patch-python |
203 | (lambda* (#:key inputs #:allow-other-keys) | |
204 | (let ((python (assoc-ref inputs "python"))) | |
205 | (substitute* "lapack_testing.py" | |
206 | (("/usr/bin/env python") python)))) | |
06ed5982 | 207 | %standard-phases))) |
da95c817 NK |
208 | (synopsis "Library for numerical linear algebra") |
209 | (description | |
210 | "LAPACK is a Fortran 90 library for solving the most commonly occurring | |
211 | problems in numerical linear algebra.") | |
212 | (license (license:bsd-style "file://LICENSE" | |
213 | "See LICENSE in the distribution.")))) | |
73fed4f8 JD |
214 | |
215 | (define-public gnuplot | |
216 | (package | |
217 | (name "gnuplot") | |
218 | (version "4.6.3") | |
219 | (source | |
220 | (origin | |
221 | (method url-fetch) | |
222 | (uri (string-append "mirror://sourceforge/gnuplot/gnuplot/" | |
223 | version "/gnuplot-" version ".tar.gz")) | |
224 | (sha256 | |
225 | (base32 | |
226 | "1xd7gqdhlk7k1p9yyqf9vkk811nadc7m4si0q3nb6cpv4pxglpyz")))) | |
227 | (build-system gnu-build-system) | |
228 | (inputs `(("readline" ,readline) | |
229 | ("cairo" ,cairo) | |
230 | ("pango" ,pango) | |
231 | ("gd" ,gd))) | |
232 | (native-inputs `(("texlive" ,texlive) | |
233 | ("pkg-config" ,pkg-config))) | |
234 | (home-page "http://www.gnuplot.info") | |
235 | (synopsis "Command-line driven graphing utility") | |
236 | (description "Gnuplot is a portable command-line driven graphing | |
237 | utility. It was originally created to allow scientists and students to | |
238 | visualize mathematical functions and data interactively, but has grown to | |
239 | support many non-interactive uses such as web scripting. It is also used as a | |
240 | plotting engine by third-party applications like Octave.") | |
241 | ;; X11 Style with the additional restriction that derived works may only be | |
242 | ;; distributed as patches to the original. | |
243 | (license (license:fsf-free | |
668c06ac JD |
244 | "http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright")))) |
245 | ||
7ee3f1a2 JD |
246 | (define-public hdf5 |
247 | (package | |
248 | (name "hdf5") | |
249 | (version "1.8.12") | |
250 | (source | |
251 | (origin | |
252 | (method url-fetch) | |
253 | (uri (string-append "http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-" | |
254 | version ".tar.bz2")) | |
255 | (sha256 | |
256 | (base32 "0f9n0v3p3lwc7564791a39c6cn1d3dbrn7d1j3ikqsi27a8hy23d")))) | |
257 | (build-system gnu-build-system) | |
258 | (arguments | |
259 | `(#:phases | |
d4bf49b1 EB |
260 | (alist-cons-before |
261 | 'configure 'patch-configure | |
262 | (lambda _ | |
263 | (substitute* "configure" | |
264 | (("/bin/mv") "mv"))) | |
7ee3f1a2 JD |
265 | %standard-phases))) |
266 | (outputs '("out" "bin" "lib" "include")) | |
267 | (home-page "http://www.hdfgroup.org") | |
268 | (synopsis "Management suite for extremely large and complex data") | |
269 | (description "HDF5 is a suite that makes possible the management of | |
270 | extremely large and complex data collections.") | |
d4bf49b1 EB |
271 | (license (license:x11-style |
272 | "http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING")))) | |
7ee3f1a2 JD |
273 | |
274 | ||
668c06ac JD |
275 | ;; For a fully featured Octave, users are strongly recommended also to install |
276 | ;; the following packages: texinfo, less, ghostscript, gnuplot. | |
277 | (define-public octave | |
278 | (package | |
279 | (name "octave") | |
280 | (version "3.8.0") | |
281 | (source | |
282 | (origin | |
283 | (method url-fetch) | |
284 | (uri (string-append "mirror://gnu/octave/octave-" | |
285 | version ".tar.gz")) | |
286 | (sha256 | |
287 | (base32 | |
288 | "0ks9pr154syw0vb3jn6xsnrkkrbvf9y7i7gaxa28rz6ngxbxvq9l")))) | |
289 | (build-system gnu-build-system) | |
290 | (inputs | |
291 | `(("lapack" ,lapack) | |
292 | ("readline" ,readline) | |
293 | ("glpk" ,glpk) | |
294 | ("curl" ,curl) | |
295 | ("pcre" ,pcre) | |
296 | ("fltk" ,fltk) | |
297 | ("fontconfig" ,fontconfig) | |
298 | ("freetype" ,freetype) | |
7ee3f1a2 JD |
299 | ("hdf5-lib" ,hdf5 "lib") |
300 | ("hdf5-include" ,hdf5 "include") | |
668c06ac JD |
301 | ("libxft" ,libxft) |
302 | ("mesa" ,mesa) | |
303 | ("zlib" ,zlib))) | |
304 | (native-inputs | |
305 | `(("gfortran" ,gfortran-4.8) | |
306 | ("pkg-config" ,pkg-config) | |
307 | ("perl" ,perl) | |
308 | ;; The following inputs are not actually used in the build process. However, the | |
309 | ;; ./configure gratuitously tests for their existence and assumes that programs not | |
310 | ;; present at build time are also not, and can never be, available at run time! | |
311 | ;; If these inputs are therefore not present, support for them will be built out. | |
312 | ;; However, Octave will still run without them, albeit without the features they | |
313 | ;; provide. | |
314 | ("less" ,less) | |
315 | ("texinfo" ,texinfo) | |
316 | ("ghostscript" ,ghostscript) | |
317 | ("gnuplot" ,gnuplot))) | |
318 | (arguments | |
319 | `(#:configure-flags (list (string-append "--with-shell=" | |
320 | (assoc-ref %build-inputs "bash") | |
321 | "/bin/sh")))) | |
322 | (home-page "http://www.gnu.org/software/octave/") | |
323 | (synopsis "High-level language for numerical computation") | |
324 | (description "GNU Octave is a high-level interpreted language that is specialized | |
325 | for numerical computations. It can be used for both linear and non-linear | |
326 | applications and it provides great support for visualizing results. Work may | |
327 | be performed both at the interactive command-line as well as via script | |
328 | files.") | |
329 | (license license:gpl3+))) | |
3de01d3f EB |
330 | |
331 | (define-public gmsh | |
332 | (package | |
333 | (name "gmsh") | |
334 | (version "2.8.4") | |
335 | (source | |
336 | (origin | |
337 | (method url-fetch) | |
338 | (uri (string-append "http://www.geuz.org/gmsh/src/gmsh-" | |
339 | version "-source.tgz")) | |
340 | (sha256 | |
341 | (base32 "0jv2yvk28w86rx5mvjkb0w12ff2jxih7axnpvznpd295lg5jg7hr")) | |
342 | (modules '((guix build utils))) | |
343 | (snippet | |
344 | ;; Remove non-free METIS code | |
345 | '(delete-file-recursively "contrib/Metis")))) | |
346 | (build-system cmake-build-system) | |
347 | (native-inputs `(("patchelf" ,patchelf))) ;for augment-rpath | |
348 | (propagated-inputs | |
349 | `(("fltk" ,fltk) | |
350 | ("gfortran" ,gfortran-4.8) | |
351 | ("gmp" ,gmp) | |
352 | ("hdf5-lib" ,hdf5 "lib") | |
353 | ("hdf5-include" ,hdf5 "include") | |
354 | ("lapack" ,lapack) | |
355 | ("mesa" ,mesa) | |
356 | ("libx11" ,libx11) | |
357 | ("libxext" ,libxext))) | |
358 | (arguments | |
359 | `(#:configure-flags `("-DENABLE_METIS:BOOL=OFF" | |
360 | "-DENABLE_BUILD_SHARED:BOOL=ON" | |
361 | "-DENABLE_BUILD_DYNAMIC:BOOL=ON"))) | |
362 | (home-page "http://www.geuz.org/gmsh/") | |
363 | (synopsis "3D finite element grid generator") | |
edf684ef EB |
364 | (description "Gmsh is a 3D finite element grid generator with a built-in |
365 | CAD engine and post-processor. Its design goal is to provide a fast, light | |
366 | and user-friendly meshing tool with parametric input and advanced | |
367 | visualization capabilities. Gmsh is built around four modules: geometry, | |
368 | mesh, solver and post-processing. The specification of any input to these | |
369 | modules is done either interactively using the graphical user interface or in | |
370 | ASCII text files using Gmsh's own scripting language.") | |
3de01d3f | 371 | (license license:gpl2+))) |
b9100e2f EB |
372 | |
373 | (define-public petsc | |
374 | (package | |
375 | (name "petsc") | |
376 | (version "3.4.4") | |
377 | (source | |
378 | (origin | |
379 | (method url-fetch) | |
380 | ;; The *-lite-* tarball does not contain the *large* documentation | |
381 | (uri (string-append "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/" | |
382 | "petsc-lite-" version ".tar.gz")) | |
383 | (sha256 | |
384 | (base32 "0v5dg6dhdjpi5ianvd4mm6hsvxzv1bsxwnh9f9myag0a0d9xk9iv")) | |
385 | (patches | |
386 | (list (search-patch "petsc-fix-threadcomm.patch"))))) | |
387 | (build-system gnu-build-system) | |
388 | (native-inputs | |
389 | `(("python" ,python-2) | |
390 | ("perl" ,perl))) | |
391 | (inputs | |
392 | `(("gfortran" ,gfortran-4.8) | |
393 | ("lapack" ,lapack) | |
f258212d | 394 | ("superlu" ,superlu) |
b9100e2f EB |
395 | ;; leaving out hdf5 and fftw, as petsc expects them to be built with mpi |
396 | ;; leaving out opengl, as configuration seems to only be for mac | |
397 | )) | |
398 | (arguments | |
399 | `(#:test-target "test" | |
400 | #:parallel-build? #f | |
401 | #:configure-flags | |
402 | `("--with-mpi=0" | |
f258212d EB |
403 | "--with-openmp=1" |
404 | "--with-superlu=1" | |
405 | ,(string-append "--with-superlu-include=" | |
406 | (assoc-ref %build-inputs "superlu") "/include") | |
407 | ,(string-append "--with-superlu-lib=" | |
408 | (assoc-ref %build-inputs "superlu") "/lib/libsuperlu.a")) | |
b9100e2f EB |
409 | #:phases |
410 | (alist-replace | |
411 | 'configure | |
412 | ;; PETSc's configure script is actually a python script, so we can't | |
413 | ;; run it with bash. | |
414 | (lambda* (#:key outputs (configure-flags '()) | |
415 | #:allow-other-keys) | |
416 | (let* ((prefix (assoc-ref outputs "out")) | |
417 | (flags `(,(string-append "--prefix=" prefix) | |
418 | ,@configure-flags))) | |
419 | (format #t "build directory: ~s~%" (getcwd)) | |
420 | (format #t "configure flags: ~s~%" flags) | |
421 | (zero? (apply system* "./configure" flags)))) | |
422 | (alist-cons-after | |
423 | 'install 'clean-local-references | |
424 | ;; Try to keep installed files from leaking build directory names. | |
425 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
426 | (let ((out (assoc-ref outputs "out")) | |
427 | (fortran (assoc-ref inputs "gfortran"))) | |
428 | (substitute* (map (lambda (file) | |
429 | (string-append out "/" file)) | |
430 | '("conf/petscvariables" | |
431 | "conf/PETScConfig.cmake" | |
432 | "include/petscconf.h" | |
433 | "include/petscmachineinfo.h")) | |
434 | (((getcwd)) out)) | |
435 | ;; Make compiler references point to the store | |
436 | (substitute* (string-append out "/conf/petscvariables") | |
437 | (("= g(cc|\\+\\+|fortran)" _ suffix) | |
438 | (string-append "= " fortran "/bin/g" suffix))) | |
439 | ;; PETSc installs some build logs, which aren't necessary. | |
440 | (for-each (lambda (file) | |
441 | (delete-file (string-append out "/" file))) | |
442 | '("conf/configure.log" | |
443 | "conf/make.log" | |
444 | "conf/test.log" | |
445 | "conf/RDict.db" | |
446 | ;; Once installed, should uninstall with Guix | |
447 | "conf/uninstall.py")))) | |
448 | %standard-phases)))) | |
449 | (home-page "http://www.mcs.anl.gov/petsc") | |
450 | (synopsis "Library to solve ODEs and algebraic equations") | |
451 | (description "PETSc, pronounced PET-see (the S is silent), is a suite of | |
452 | data structures and routines for the scalable (parallel) solution of | |
453 | scientific applications modeled by partial differential equations.") | |
454 | (license (license:bsd-style | |
455 | "http://www.mcs.anl.gov/petsc/documentation/copyright.html")))) | |
456 | ||
457 | (define-public petsc-complex | |
458 | (package (inherit petsc) | |
459 | (name "petsc-complex") | |
460 | (arguments | |
461 | (substitute-keyword-arguments (package-arguments petsc) | |
462 | ((#:configure-flags cf) | |
463 | `(cons "--with-scalar-type=complex" ,cf)))) | |
464 | (description | |
465 | (string-append (package-description petsc) | |
466 | " Complex scalar type version.")))) | |
183e44ae EB |
467 | |
468 | (define-public superlu | |
469 | (package | |
470 | (name "superlu") | |
471 | (version "4.3") | |
472 | (source | |
473 | (origin | |
474 | (method url-fetch) | |
475 | (uri (string-append "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/" | |
476 | "superlu_" version ".tar.gz")) | |
477 | (sha256 | |
478 | (base32 "10b785s9s4x0m9q7ihap09275pq4km3k2hk76jiwdfdr5qr2168n")))) | |
479 | (build-system gnu-build-system) | |
480 | (native-inputs | |
481 | `(("tcsh" ,tcsh))) | |
482 | (inputs | |
483 | `(("lapack" ,lapack) | |
484 | ("gfortran" ,gfortran-4.8))) | |
485 | (arguments | |
486 | `(#:parallel-build? #f | |
487 | #:tests? #f ;tests are run as part of `make all` | |
488 | #:phases | |
489 | (alist-replace | |
490 | 'configure | |
491 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
492 | (call-with-output-file "make.inc" | |
493 | (lambda (port) | |
494 | (format port " | |
495 | PLAT = | |
496 | SuperLUroot = ~a | |
497 | SUPERLULIB = ~a/lib/libsuperlu.a | |
498 | TMGLIB = libtmglib.a | |
499 | BLASDEF = -DUSE_VENDOR_BLAS | |
500 | BLASLIB = -L~a/lib -lblas | |
501 | LIBS = $(SUPERLULIB) $(BLASLIB) | |
502 | ARCH = ar | |
503 | ARCHFLAGS = cr | |
504 | RANLIB = ranlib | |
505 | CC = gcc | |
506 | PIC = -fPIC | |
507 | CFLAGS = -O3 -DPRNTlevel=0 $(PIC) | |
508 | NOOPTS = -O0 $(PIC) | |
509 | FORTRAN = gfortran | |
510 | FFLAGS = -O2 $(PIC) | |
511 | LOADER = $(CC) | |
512 | CDEFS = -DAdd_" | |
513 | (getcwd) | |
514 | (assoc-ref outputs "out") | |
515 | (assoc-ref inputs "lapack"))))) | |
516 | (alist-cons-before | |
517 | 'build 'create-install-directories | |
518 | (lambda* (#:key outputs #:allow-other-keys) | |
519 | (for-each | |
520 | (lambda (dir) | |
521 | (mkdir-p (string-append (assoc-ref outputs "out") | |
522 | "/" dir))) | |
523 | '("lib" "include"))) | |
524 | (alist-replace | |
525 | 'install | |
526 | (lambda* (#:key outputs #:allow-other-keys) | |
527 | ;; Library is placed in lib during the build phase. Copy over | |
528 | ;; headers to include. | |
529 | (let* ((out (assoc-ref outputs "out")) | |
530 | (incdir (string-append out "/include"))) | |
531 | (for-each (lambda (file) | |
532 | (let ((base (basename file))) | |
533 | (format #t "installing `~a' to `~a'~%" | |
534 | base incdir) | |
535 | (copy-file file | |
536 | (string-append incdir "/" base)))) | |
537 | (find-files "SRC" ".*\\.h$")))) | |
538 | %standard-phases))))) | |
539 | (home-page "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/") | |
540 | (synopsis "Supernodal direct solver for sparse linear systems") | |
541 | (description | |
542 | "SuperLU is a general purpose library for the direct solution of large, | |
543 | sparse, nonsymmetric systems of linear equations on high performance machines. | |
544 | The library is written in C and is callable from either C or Fortran. The | |
545 | library routines perform an LU decomposition with partial pivoting and | |
546 | triangular system solves through forward and back substitution. The library | |
547 | also provides threshold-based ILU factorization preconditioners.") | |
548 | (license license:bsd-3))) |