[jackhill/guix/guix.git] / gnu / packages / maths.scm

;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages maths)
  #:use-module (gnu packages)
  #:use-module ((guix licenses)
                #:renamer (symbol-prefix-proc 'license:))
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix build-system cmake)
  #:use-module (guix build-system gnu)
  #:use-module (gnu packages compression)
  #:use-module (gnu packages curl)
  #:use-module (gnu packages fltk)
  #:use-module (gnu packages fontutils)
  #:use-module (gnu packages gettext)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages gd)
  #:use-module (gnu packages ghostscript)
  #:use-module (gnu packages gtk)
  #:use-module (gnu packages less)
  #:use-module (gnu packages xorg)
  #:use-module (gnu packages gl)
  #:use-module (gnu packages multiprecision)
  #:use-module (gnu packages pcre)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages python)
  #:use-module (gnu packages readline)
  #:use-module (gnu packages texinfo)
  #:use-module (gnu packages texlive)
  #:use-module (gnu packages xml))

(define-public units
  (package
   (name "units")
   (version "2.02")
   (source (origin
            (method url-fetch)
            (uri (string-append "mirror://gnu/units/units-" version
                                ".tar.gz"))
            (sha256 (base32
                     "16jfji9g1zc99agd5dcinajinhcxr4dgq2lrbc9md69ir5qgld1b"))))
   (build-system gnu-build-system)
   (synopsis "Conversion between thousands of scales")
   (description
    "GNU Units converts between measured quantities between units of
measure.  It can handle scale changes through adaptive usage of standard
scale prefixes (micro-, kilo-, etc.).  It can also handle nonlinear
conversions such as Fahrenheit to Celsius.  Its interpreter is powerful
enough to be used effectively as a scientific calculator.")
   (license license:gpl3+)
   (home-page "http://www.gnu.org/software/units/")))

(define-public gsl
  (package
    (name "gsl")
    (version "1.16")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "mirror://gnu/gsl/gsl-"
                          version ".tar.gz"))
      (sha256
       (base32
        "0lrgipi0z6559jqh82yx8n4xgnxkhzj46v96dl77hahdp58jzg3k"))))
    (build-system gnu-build-system)
    (arguments
     `(#:parallel-tests? #f
       #:phases
        (alist-replace
         'configure
         (lambda* (#:key target system outputs #:allow-other-keys #:rest args)
           (let ((configure (assoc-ref %standard-phases 'configure)))
             ;; disable numerically unstable test on i686, see thread at
             ;; http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html
             (if (string=? (or target system) "i686-linux")
                 (substitute* "ode-initval2/Makefile.in"
                   (("TESTS = \\$\\(check_PROGRAMS\\)") "TESTS =")))
             (apply configure args)))
         %standard-phases)))
    (home-page "http://www.gnu.org/software/gsl/")
    (synopsis "Numerical library for C and C++")
    (description
     "The GNU Scientific Library is a library for numerical analysis in C
and C++.  It includes a wide range of mathematical routines, with over 1000
functions in total.  Subject areas covered by the library include:
differential equations, linear algebra, Fast Fourier Transforms and random
numbers.")
    (license license:gpl3+)))

(define-public glpk
  (package
    (name "glpk")
    (version "4.52.1")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "mirror://gnu/glpk/glpk-"
                          version ".tar.gz"))
      (sha256
       (base32
        "0nz9ngmx23c8gbjr8l8ygnfaanxj2mwbl8awpg630bgrkxdnhc9j"))))
    (build-system gnu-build-system)
    (inputs
     `(("gmp" ,gmp)))
    (arguments
     `(#:configure-flags '("--with-gmp")))
    (home-page "http://www.gnu.org/software/glpk/")
    (synopsis "GNU Linear Programming Kit, supporting the MathProg language")
    (description
     "GLPK is a C library for solving large-scale linear programming (LP),
mixed integer programming (MIP), and other related problems.  It supports the
GNU MathProg modeling language, a subset of the AMPL language, and features a
translator for the language.  In addition to the C library, a stand-alone
LP/MIP solver is included in the package.")
    (license license:gpl3+)))

(define-public pspp
  (package
    (name "pspp")
    (version "0.8.2")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "mirror://gnu/pspp/pspp-"
                          version ".tar.gz"))
      (sha256
       (base32
        "1w7h3dglgx0jlq1wb605b8pgfsk2vr1q2q2rj7bsajh9ihbcsixr"))))
    (build-system gnu-build-system)
    (inputs
     `(("cairo" ,cairo)
       ("fontconfig" ,fontconfig)
       ("gettext" ,gnu-gettext)
       ("gsl" ,gsl)
       ("libxml2" ,libxml2)
       ("pango" ,pango)
       ("readline" ,readline)
       ("gtk" ,gtk+-2)
       ("gtksourceview" ,gtksourceview)
       ("zlib" ,zlib)))
    (native-inputs
     `(("perl" ,perl)
       ("pkg-config" ,pkg-config)))
    (home-page "http://www.gnu.org/software/pspp/")
    (synopsis "Statistical analysis")
    (description
     "GNU PSPP is a statistical analysis program.  It can perform
descriptive statistics, T-tests, linear regression and non-parametric tests. 
It features both a graphical interface as well as command-line input. PSPP is
designed to interoperate with Gnumeric, LibreOffice and OpenOffice.  Data can
be imported from spreadsheets, text files and database sources and it can be
output in text, PostScript, PDF or HTML.")
    (license license:gpl3+)))

(define-public lapack
  (package
    (name "lapack")
    (version "3.5.0")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "http://www.netlib.org/lapack/lapack-"
                          version ".tgz"))
      (sha256
       (base32
        "0lk3f97i9imqascnlf6wr5mjpyxqcdj73pgj97dj2mgvyg9z1n4s"))))
    (build-system cmake-build-system)
    (home-page "http://www.netlib.org/lapack/")
    (inputs `(("fortran" ,gfortran-4.8)
              ("python" ,python-2)))
    (arguments
     `(#:modules ((guix build cmake-build-system)
                  (guix build utils)
                  (srfi srfi-1))
       #:phases (alist-cons-before
                 'check 'patch-python
                 (lambda* (#:key inputs #:allow-other-keys)
                   (let ((python (assoc-ref inputs "python")))
                     (substitute* "lapack_testing.py"
                       (("/usr/bin/env python") python))))
                 %standard-phases)))
    (synopsis "Library for numerical linear algebra")
    (description
     "LAPACK is a Fortran 90 library for solving the most commonly occurring
problems in numerical linear algebra.")
    (license (license:bsd-style "file://LICENSE"
                                "See LICENSE in the distribution."))))

(define-public gnuplot
  (package
    (name "gnuplot")
    (version "4.6.3")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "mirror://sourceforge/gnuplot/gnuplot/"
                                version "/gnuplot-" version ".tar.gz"))
      (sha256
       (base32
        "1xd7gqdhlk7k1p9yyqf9vkk811nadc7m4si0q3nb6cpv4pxglpyz"))))
    (build-system gnu-build-system)
    (inputs `(("readline" ,readline)
              ("cairo" ,cairo)
              ("pango" ,pango)
              ("gd" ,gd)))
    (native-inputs `(("texlive" ,texlive)
                     ("pkg-config" ,pkg-config)))
    (home-page "http://www.gnuplot.info")
    (synopsis "Command-line driven graphing utility")
    (description "Gnuplot is a portable command-line driven graphing
utility. It was originally created to allow scientists and students to
visualize mathematical functions and data interactively, but has grown to
support many non-interactive uses such as web scripting. It is also used as a
plotting engine by third-party applications like Octave.")
    ;;  X11 Style with the additional restriction that derived works may only be
    ;;  distributed as patches to the original.
    (license (license:fsf-free
	      "http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright"))))

(define-public hdf5
  (package
    (name "hdf5")
    (version "1.8.12")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-"
                          version ".tar.bz2"))
      (sha256
       (base32 "0f9n0v3p3lwc7564791a39c6cn1d3dbrn7d1j3ikqsi27a8hy23d"))))
    (build-system gnu-build-system)
    (arguments
     `(#:phases
        (alist-cons-before
         'configure 'patch-configure
         (lambda _
           (substitute* "configure"
             (("/bin/mv") "mv")))
         %standard-phases)))
    (outputs '("out" "bin" "lib" "include"))
    (home-page "http://www.hdfgroup.org")
    (synopsis "Management suite for  extremely large and complex data")
    (description "HDF5 is a suite that makes possible the management of
extremely large and complex data collections.")
    (license (license:x11-style
              "http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING"))))


;; For a fully featured Octave, users  are strongly recommended also to install
;; the following packages: texinfo, less, ghostscript, gnuplot.
(define-public octave
  (package
    (name "octave")
    (version "3.8.0")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "mirror://gnu/octave/octave-"
			  version ".tar.gz"))
      (sha256
       (base32
	"0ks9pr154syw0vb3jn6xsnrkkrbvf9y7i7gaxa28rz6ngxbxvq9l"))))
    (build-system gnu-build-system)
    (inputs
     `(("lapack" ,lapack)
       ("readline" ,readline)
       ("glpk" ,glpk)
       ("curl" ,curl)
       ("pcre" ,pcre)
       ("fltk" ,fltk)
       ("fontconfig" ,fontconfig)
       ("freetype" ,freetype)
       ("hdf5-lib" ,hdf5 "lib")
       ("hdf5-include" ,hdf5 "include")
       ("libxft" ,libxft)
       ("mesa" ,mesa)
       ("zlib" ,zlib)))
    (native-inputs
     `(("gfortran" ,gfortran-4.8)
       ("pkg-config" ,pkg-config)
       ("perl" ,perl)
       ;; The following inputs are not actually used in the build process.  However, the
       ;; ./configure gratuitously tests for their existence and assumes that programs not
       ;; present at build time are also not, and can never be, available at run time!
       ;; If these inputs are therefore not present, support for them will be built out.
       ;; However, Octave will still run without them, albeit without the features they
       ;; provide.
       ("less" ,less)
       ("texinfo" ,texinfo)
       ("ghostscript" ,ghostscript)
       ("gnuplot" ,gnuplot)))
    (arguments
     `(#:configure-flags (list (string-append "--with-shell="
			    (assoc-ref %build-inputs "bash")
			    "/bin/sh"))))
    (home-page "http://www.gnu.org/software/octave/")
    (synopsis "High-level language for numerical computation")
    (description "GNU Octave is a high-level interpreted language that is specialized
for numerical computations.  It can be used for both linear and non-linear
applications and it provides great support for visualizing results.  Work may
be performed both at the interactive command-line as well as via script
files.")
    (license license:gpl3+)))
Commit	Line	Data
8f8b2451 AE	1	;;; GNU Guix --- Functional package management for GNU
8f8b2451 AE	2	;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
da95c817	3	;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
668c06ac	4	;;; Copyright © 2014 John Darrington <jmd@gnu.org>
8f8b2451 AE	5	;;;
	6	;;; This file is part of GNU Guix.
	7	;;;
	8	;;; GNU Guix is free software; you can redistribute it and/or modify it
	9	;;; under the terms of the GNU General Public License as published by
	10	;;; the Free Software Foundation; either version 3 of the License, or (at
	11	;;; your option) any later version.
	12	;;;
	13	;;; GNU Guix is distributed in the hope that it will be useful, but
	14	;;; WITHOUT ANY WARRANTY; without even the implied warranty of
	15	;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	16	;;; GNU General Public License for more details.
	17	;;;
	18	;;; You should have received a copy of the GNU General Public License
	19	;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
	20
	21	(define-module (gnu packages maths)
	22	#:use-module (gnu packages)
	23	#:use-module ((guix licenses)
	24	#:renamer (symbol-prefix-proc 'license:))
	25	#:use-module (guix packages)
	26	#:use-module (guix download)
da95c817	27	#:use-module (guix build-system cmake)
c9dfa3c7	28	#:use-module (guix build-system gnu)
c9dfa3c7	29	#:use-module (gnu packages compression)
668c06ac JD	30	#:use-module (gnu packages curl)
668c06ac JD	31	#:use-module (gnu packages fltk)
f3929800	32	#:use-module (gnu packages fontutils)
1dba6407	33	#:use-module (gnu packages gettext)
da95c817	34	#:use-module (gnu packages gcc)
73fed4f8	35	#:use-module (gnu packages gd)
668c06ac	36	#:use-module (gnu packages ghostscript)
f3929800	37	#:use-module (gnu packages gtk)
668c06ac JD	38	#:use-module (gnu packages less)
	39	#:use-module (gnu packages xorg)
	40	#:use-module (gnu packages gl)
b92eee75	41	#:use-module (gnu packages multiprecision)
668c06ac	42	#:use-module (gnu packages pcre)
c9dfa3c7 AE	43	#:use-module (gnu packages perl)
c9dfa3c7 AE	44	#:use-module (gnu packages pkg-config)
da95c817	45	#:use-module (gnu packages python)
c9dfa3c7	46	#:use-module (gnu packages readline)
668c06ac	47	#:use-module (gnu packages texinfo)
73fed4f8	48	#:use-module (gnu packages texlive)
c9dfa3c7	49	#:use-module (gnu packages xml))
8f8b2451 AE	50
	51	(define-public units
	52	(package
	53	(name "units")
d6f10ca3	54	(version "2.02")
8f8b2451 AE	55	(source (origin
	56	(method url-fetch)
	57	(uri (string-append "mirror://gnu/units/units-" version
	58	".tar.gz"))
	59	(sha256 (base32
d6f10ca3	60	"16jfji9g1zc99agd5dcinajinhcxr4dgq2lrbc9md69ir5qgld1b"))))
8f8b2451 AE	61	(build-system gnu-build-system)
	62	(synopsis "Conversion between thousands of scales")
	63	(description
79c311b8	64	"GNU Units converts between measured quantities between units of
a22dc0c4	65	measure. It can handle scale changes through adaptive usage of standard
79c311b8 LC	66	scale prefixes (micro-, kilo-, etc.). It can also handle nonlinear
79c311b8 LC	67	conversions such as Fahrenheit to Celsius. Its interpreter is powerful
a22dc0c4	68	enough to be used effectively as a scientific calculator.")
8f8b2451 AE	69	(license license:gpl3+)
8f8b2451 AE	70	(home-page "http://www.gnu.org/software/units/")))
c9dfa3c7	71
88bd1804 AE	72	(define-public gsl
	73	(package
	74	(name "gsl")
487da565	75	(version "1.16")
88bd1804 AE	76	(source
	77	(origin
	78	(method url-fetch)
	79	(uri (string-append "mirror://gnu/gsl/gsl-"
	80	version ".tar.gz"))
	81	(sha256
	82	(base32
487da565	83	"0lrgipi0z6559jqh82yx8n4xgnxkhzj46v96dl77hahdp58jzg3k"))))
88bd1804	84	(build-system gnu-build-system)
71e0f288	85	(arguments
487da565 AE	86	`(#:parallel-tests? #f
487da565 AE	87	#:phases
71e0f288 AE	88	(alist-replace
	89	'configure
	90	(lambda* (#:key target system outputs #:allow-other-keys #:rest args)
	91	(let ((configure (assoc-ref %standard-phases 'configure)))
	92	;; disable numerically unstable test on i686, see thread at
	93	;; http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html
	94	(if (string=? (or target system) "i686-linux")
	95	(substitute* "ode-initval2/Makefile.in"
	96	(("TESTS = \\$\\(check_PROGRAMS\\)") "TESTS =")))
	97	(apply configure args)))
	98	%standard-phases)))
88bd1804 AE	99	(home-page "http://www.gnu.org/software/gsl/")
	100	(synopsis "Numerical library for C and C++")
	101	(description
a22dc0c4 LC	102	"The GNU Scientific Library is a library for numerical analysis in C
	103	and C++. It includes a wide range of mathematical routines, with over 1000
	104	functions in total. Subject areas covered by the library include:
	105	differential equations, linear algebra, Fast Fourier Transforms and random
	106	numbers.")
88bd1804 AE	107	(license license:gpl3+)))
88bd1804 AE	108
b92eee75 AE	109	(define-public glpk
	110	(package
	111	(name "glpk")
	112	(version "4.52.1")
	113	(source
	114	(origin
	115	(method url-fetch)
	116	(uri (string-append "mirror://gnu/glpk/glpk-"
	117	version ".tar.gz"))
	118	(sha256
	119	(base32
	120	"0nz9ngmx23c8gbjr8l8ygnfaanxj2mwbl8awpg630bgrkxdnhc9j"))))
	121	(build-system gnu-build-system)
	122	(inputs
	123	`(("gmp" ,gmp)))
	124	(arguments
	125	`(#:configure-flags '("--with-gmp")))
	126	(home-page "http://www.gnu.org/software/glpk/")
79c311b8	127	(synopsis "GNU Linear Programming Kit, supporting the MathProg language")
b92eee75 AE	128	(description
	129	"GLPK is a C library for solving large-scale linear programming (LP),
	130	mixed integer programming (MIP), and other related problems. It supports the
	131	GNU MathProg modeling language, a subset of the AMPL language, and features a
	132	translator for the language. In addition to the C library, a stand-alone
	133	LP/MIP solver is included in the package.")
	134	(license license:gpl3+)))
	135
c9dfa3c7 AE	136	(define-public pspp
	137	(package
	138	(name "pspp")
e7d6f7bf	139	(version "0.8.2")
c9dfa3c7 AE	140	(source
	141	(origin
	142	(method url-fetch)
	143	(uri (string-append "mirror://gnu/pspp/pspp-"
	144	version ".tar.gz"))
	145	(sha256
	146	(base32
e7d6f7bf	147	"1w7h3dglgx0jlq1wb605b8pgfsk2vr1q2q2rj7bsajh9ihbcsixr"))))
c9dfa3c7 AE	148	(build-system gnu-build-system)
c9dfa3c7 AE	149	(inputs
f3929800 AE	150	`(("cairo" ,cairo)
f3929800 AE	151	("fontconfig" ,fontconfig)
1dba6407	152	("gettext" ,gnu-gettext)
c9dfa3c7 AE	153	("gsl" ,gsl)
c9dfa3c7 AE	154	("libxml2" ,libxml2)
f3929800	155	("pango" ,pango)
c9dfa3c7	156	("readline" ,readline)
e6a5ce8e JD	157	("gtk" ,gtk+-2)
e6a5ce8e JD	158	("gtksourceview" ,gtksourceview)
c9dfa3c7 AE	159	("zlib" ,zlib)))
	160	(native-inputs
	161	`(("perl" ,perl)
	162	("pkg-config" ,pkg-config)))
c9dfa3c7 AE	163	(home-page "http://www.gnu.org/software/pspp/")
	164	(synopsis "Statistical analysis")
	165	(description
79c311b8 LC	166	"GNU PSPP is a statistical analysis program. It can perform
	167	descriptive statistics, T-tests, linear regression and non-parametric tests.
	168	It features both a graphical interface as well as command-line input. PSPP is
	169	designed to interoperate with Gnumeric, LibreOffice and OpenOffice. Data can
	170	be imported from spreadsheets, text files and database sources and it can be
	171	output in text, PostScript, PDF or HTML.")
c9dfa3c7	172	(license license:gpl3+)))
da95c817 NK	173
	174	(define-public lapack
	175	(package
	176	(name "lapack")
566146ab	177	(version "3.5.0")
da95c817 NK	178	(source
	179	(origin
	180	(method url-fetch)
	181	(uri (string-append "http://www.netlib.org/lapack/lapack-"
	182	version ".tgz"))
	183	(sha256
	184	(base32
566146ab	185	"0lk3f97i9imqascnlf6wr5mjpyxqcdj73pgj97dj2mgvyg9z1n4s"))))
da95c817 NK	186	(build-system cmake-build-system)
	187	(home-page "http://www.netlib.org/lapack/")
	188	(inputs `(("fortran" ,gfortran-4.8)
	189	("python" ,python-2)))
	190	(arguments
	191	`(#:modules ((guix build cmake-build-system)
	192	(guix build utils)
	193	(srfi srfi-1))
	194	#:phases (alist-cons-before
6a995754 LC	195	'check 'patch-python
	196	(lambda* (#:key inputs #:allow-other-keys)
	197	(let ((python (assoc-ref inputs "python")))
	198	(substitute* "lapack_testing.py"
	199	(("/usr/bin/env python") python))))
	200	%standard-phases)))
da95c817 NK	201	(synopsis "Library for numerical linear algebra")
	202	(description
	203	"LAPACK is a Fortran 90 library for solving the most commonly occurring
	204	problems in numerical linear algebra.")
	205	(license (license:bsd-style "file://LICENSE"
	206	"See LICENSE in the distribution."))))
73fed4f8 JD	207
	208	(define-public gnuplot
	209	(package
	210	(name "gnuplot")
	211	(version "4.6.3")
	212	(source
	213	(origin
	214	(method url-fetch)
	215	(uri (string-append "mirror://sourceforge/gnuplot/gnuplot/"
	216	version "/gnuplot-" version ".tar.gz"))
	217	(sha256
	218	(base32
	219	"1xd7gqdhlk7k1p9yyqf9vkk811nadc7m4si0q3nb6cpv4pxglpyz"))))
	220	(build-system gnu-build-system)
	221	(inputs `(("readline" ,readline)
	222	("cairo" ,cairo)
	223	("pango" ,pango)
	224	("gd" ,gd)))
	225	(native-inputs `(("texlive" ,texlive)
	226	("pkg-config" ,pkg-config)))
	227	(home-page "http://www.gnuplot.info")
	228	(synopsis "Command-line driven graphing utility")
	229	(description "Gnuplot is a portable command-line driven graphing
	230	utility. It was originally created to allow scientists and students to
	231	visualize mathematical functions and data interactively, but has grown to
	232	support many non-interactive uses such as web scripting. It is also used as a
	233	plotting engine by third-party applications like Octave.")
	234	;; X11 Style with the additional restriction that derived works may only be
	235	;; distributed as patches to the original.
	236	(license (license:fsf-free
668c06ac JD	237	"http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright"))))
668c06ac JD	238
7ee3f1a2 JD	239	(define-public hdf5
	240	(package
	241	(name "hdf5")
	242	(version "1.8.12")
	243	(source
	244	(origin
	245	(method url-fetch)
	246	(uri (string-append "http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-"
	247	version ".tar.bz2"))
	248	(sha256
	249	(base32 "0f9n0v3p3lwc7564791a39c6cn1d3dbrn7d1j3ikqsi27a8hy23d"))))
	250	(build-system gnu-build-system)
	251	(arguments
	252	`(#:phases
d4bf49b1 EB	253	(alist-cons-before
	254	'configure 'patch-configure
	255	(lambda _
	256	(substitute* "configure"
	257	(("/bin/mv") "mv")))
7ee3f1a2 JD	258	%standard-phases)))
	259	(outputs '("out" "bin" "lib" "include"))
	260	(home-page "http://www.hdfgroup.org")
	261	(synopsis "Management suite for extremely large and complex data")
	262	(description "HDF5 is a suite that makes possible the management of
	263	extremely large and complex data collections.")
d4bf49b1 EB	264	(license (license:x11-style
d4bf49b1 EB	265	"http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING"))))
7ee3f1a2 JD	266
7ee3f1a2 JD	267
668c06ac JD	268	;; For a fully featured Octave, users are strongly recommended also to install
	269	;; the following packages: texinfo, less, ghostscript, gnuplot.
	270	(define-public octave
	271	(package
	272	(name "octave")
	273	(version "3.8.0")
	274	(source
	275	(origin
	276	(method url-fetch)
	277	(uri (string-append "mirror://gnu/octave/octave-"
	278	version ".tar.gz"))
	279	(sha256
	280	(base32
	281	"0ks9pr154syw0vb3jn6xsnrkkrbvf9y7i7gaxa28rz6ngxbxvq9l"))))
	282	(build-system gnu-build-system)
	283	(inputs
	284	`(("lapack" ,lapack)
	285	("readline" ,readline)
	286	("glpk" ,glpk)
	287	("curl" ,curl)
	288	("pcre" ,pcre)
	289	("fltk" ,fltk)
	290	("fontconfig" ,fontconfig)
	291	("freetype" ,freetype)
7ee3f1a2 JD	292	("hdf5-lib" ,hdf5 "lib")
7ee3f1a2 JD	293	("hdf5-include" ,hdf5 "include")
668c06ac JD	294	("libxft" ,libxft)
	295	("mesa" ,mesa)
	296	("zlib" ,zlib)))
	297	(native-inputs
	298	`(("gfortran" ,gfortran-4.8)
	299	("pkg-config" ,pkg-config)
	300	("perl" ,perl)
	301	;; The following inputs are not actually used in the build process. However, the
	302	;; ./configure gratuitously tests for their existence and assumes that programs not
	303	;; present at build time are also not, and can never be, available at run time!
	304	;; If these inputs are therefore not present, support for them will be built out.
	305	;; However, Octave will still run without them, albeit without the features they
	306	;; provide.
	307	("less" ,less)
	308	("texinfo" ,texinfo)
	309	("ghostscript" ,ghostscript)
	310	("gnuplot" ,gnuplot)))
	311	(arguments
	312	`(#:configure-flags (list (string-append "--with-shell="
	313	(assoc-ref %build-inputs "bash")
	314	"/bin/sh"))))
	315	(home-page "http://www.gnu.org/software/octave/")
	316	(synopsis "High-level language for numerical computation")
	317	(description "GNU Octave is a high-level interpreted language that is specialized
	318	for numerical computations. It can be used for both linear and non-linear
	319	applications and it provides great support for visualizing results. Work may
	320	be performed both at the interactive command-line as well as via script
	321	files.")
	322	(license license:gpl3+)))