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8f8b2451 AE |
1 | ;;; GNU Guix --- Functional package management for GNU |
2 | ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr> | |
da95c817 | 3 | ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org> |
668c06ac | 4 | ;;; Copyright © 2014 John Darrington <jmd@gnu.org> |
8f8b2451 AE |
5 | ;;; |
6 | ;;; This file is part of GNU Guix. | |
7 | ;;; | |
8 | ;;; GNU Guix is free software; you can redistribute it and/or modify it | |
9 | ;;; under the terms of the GNU General Public License as published by | |
10 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
11 | ;;; your option) any later version. | |
12 | ;;; | |
13 | ;;; GNU Guix is distributed in the hope that it will be useful, but | |
14 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
16 | ;;; GNU General Public License for more details. | |
17 | ;;; | |
18 | ;;; You should have received a copy of the GNU General Public License | |
19 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. | |
20 | ||
21 | (define-module (gnu packages maths) | |
22 | #:use-module (gnu packages) | |
23 | #:use-module ((guix licenses) | |
24 | #:renamer (symbol-prefix-proc 'license:)) | |
25 | #:use-module (guix packages) | |
26 | #:use-module (guix download) | |
da95c817 | 27 | #:use-module (guix build-system cmake) |
c9dfa3c7 | 28 | #:use-module (guix build-system gnu) |
c9dfa3c7 | 29 | #:use-module (gnu packages compression) |
668c06ac JD |
30 | #:use-module (gnu packages curl) |
31 | #:use-module (gnu packages fltk) | |
f3929800 | 32 | #:use-module (gnu packages fontutils) |
1dba6407 | 33 | #:use-module (gnu packages gettext) |
da95c817 | 34 | #:use-module (gnu packages gcc) |
73fed4f8 | 35 | #:use-module (gnu packages gd) |
668c06ac | 36 | #:use-module (gnu packages ghostscript) |
f3929800 | 37 | #:use-module (gnu packages gtk) |
668c06ac JD |
38 | #:use-module (gnu packages less) |
39 | #:use-module (gnu packages xorg) | |
40 | #:use-module (gnu packages gl) | |
b92eee75 | 41 | #:use-module (gnu packages multiprecision) |
668c06ac | 42 | #:use-module (gnu packages pcre) |
c9dfa3c7 AE |
43 | #:use-module (gnu packages perl) |
44 | #:use-module (gnu packages pkg-config) | |
da95c817 | 45 | #:use-module (gnu packages python) |
c9dfa3c7 | 46 | #:use-module (gnu packages readline) |
668c06ac | 47 | #:use-module (gnu packages texinfo) |
73fed4f8 | 48 | #:use-module (gnu packages texlive) |
c9dfa3c7 | 49 | #:use-module (gnu packages xml)) |
8f8b2451 AE |
50 | |
51 | (define-public units | |
52 | (package | |
53 | (name "units") | |
983815c8 | 54 | (version "2.11") |
8f8b2451 AE |
55 | (source (origin |
56 | (method url-fetch) | |
57 | (uri (string-append "mirror://gnu/units/units-" version | |
58 | ".tar.gz")) | |
59 | (sha256 (base32 | |
983815c8 | 60 | "1gjs3wc212aaiq4r76hx9nl1h3fa39n0ljwl9420d6ixl3rdmdjk")))) |
8f8b2451 AE |
61 | (build-system gnu-build-system) |
62 | (synopsis "Conversion between thousands of scales") | |
63 | (description | |
574e86f9 LC |
64 | "GNU Units converts numeric quantities between units of measure. It |
65 | can handle scale changes through adaptive usage of standard scale prefixes | |
66 | (micro-, kilo-, etc.). It can also handle nonlinear conversions such as | |
67 | Fahrenheit to Celsius. Its interpreter is powerful enough to be used | |
68 | effectively as a scientific calculator.") | |
8f8b2451 AE |
69 | (license license:gpl3+) |
70 | (home-page "http://www.gnu.org/software/units/"))) | |
c9dfa3c7 | 71 | |
88bd1804 AE |
72 | (define-public gsl |
73 | (package | |
74 | (name "gsl") | |
487da565 | 75 | (version "1.16") |
88bd1804 AE |
76 | (source |
77 | (origin | |
78 | (method url-fetch) | |
79 | (uri (string-append "mirror://gnu/gsl/gsl-" | |
80 | version ".tar.gz")) | |
81 | (sha256 | |
82 | (base32 | |
487da565 | 83 | "0lrgipi0z6559jqh82yx8n4xgnxkhzj46v96dl77hahdp58jzg3k")))) |
88bd1804 | 84 | (build-system gnu-build-system) |
71e0f288 | 85 | (arguments |
487da565 AE |
86 | `(#:parallel-tests? #f |
87 | #:phases | |
71e0f288 AE |
88 | (alist-replace |
89 | 'configure | |
90 | (lambda* (#:key target system outputs #:allow-other-keys #:rest args) | |
91 | (let ((configure (assoc-ref %standard-phases 'configure))) | |
92 | ;; disable numerically unstable test on i686, see thread at | |
93 | ;; http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html | |
94 | (if (string=? (or target system) "i686-linux") | |
95 | (substitute* "ode-initval2/Makefile.in" | |
96 | (("TESTS = \\$\\(check_PROGRAMS\\)") "TESTS ="))) | |
97 | (apply configure args))) | |
98 | %standard-phases))) | |
88bd1804 AE |
99 | (home-page "http://www.gnu.org/software/gsl/") |
100 | (synopsis "Numerical library for C and C++") | |
101 | (description | |
a22dc0c4 LC |
102 | "The GNU Scientific Library is a library for numerical analysis in C |
103 | and C++. It includes a wide range of mathematical routines, with over 1000 | |
104 | functions in total. Subject areas covered by the library include: | |
105 | differential equations, linear algebra, Fast Fourier Transforms and random | |
106 | numbers.") | |
88bd1804 AE |
107 | (license license:gpl3+))) |
108 | ||
b92eee75 AE |
109 | (define-public glpk |
110 | (package | |
111 | (name "glpk") | |
1f1c0aff | 112 | (version "4.54") |
b92eee75 AE |
113 | (source |
114 | (origin | |
115 | (method url-fetch) | |
116 | (uri (string-append "mirror://gnu/glpk/glpk-" | |
117 | version ".tar.gz")) | |
118 | (sha256 | |
119 | (base32 | |
1f1c0aff | 120 | "18gr2anv8gyps6j9f22k7li6w07glvww666sdqblvlq2hh3whwmb")))) |
b92eee75 AE |
121 | (build-system gnu-build-system) |
122 | (inputs | |
123 | `(("gmp" ,gmp))) | |
124 | (arguments | |
125 | `(#:configure-flags '("--with-gmp"))) | |
126 | (home-page "http://www.gnu.org/software/glpk/") | |
79c311b8 | 127 | (synopsis "GNU Linear Programming Kit, supporting the MathProg language") |
b92eee75 AE |
128 | (description |
129 | "GLPK is a C library for solving large-scale linear programming (LP), | |
130 | mixed integer programming (MIP), and other related problems. It supports the | |
131 | GNU MathProg modeling language, a subset of the AMPL language, and features a | |
132 | translator for the language. In addition to the C library, a stand-alone | |
133 | LP/MIP solver is included in the package.") | |
134 | (license license:gpl3+))) | |
135 | ||
c9dfa3c7 AE |
136 | (define-public pspp |
137 | (package | |
138 | (name "pspp") | |
e7d6f7bf | 139 | (version "0.8.2") |
c9dfa3c7 AE |
140 | (source |
141 | (origin | |
142 | (method url-fetch) | |
143 | (uri (string-append "mirror://gnu/pspp/pspp-" | |
144 | version ".tar.gz")) | |
145 | (sha256 | |
146 | (base32 | |
e7d6f7bf | 147 | "1w7h3dglgx0jlq1wb605b8pgfsk2vr1q2q2rj7bsajh9ihbcsixr")))) |
c9dfa3c7 AE |
148 | (build-system gnu-build-system) |
149 | (inputs | |
f3929800 AE |
150 | `(("cairo" ,cairo) |
151 | ("fontconfig" ,fontconfig) | |
1dba6407 | 152 | ("gettext" ,gnu-gettext) |
c9dfa3c7 AE |
153 | ("gsl" ,gsl) |
154 | ("libxml2" ,libxml2) | |
f3929800 | 155 | ("pango" ,pango) |
c9dfa3c7 | 156 | ("readline" ,readline) |
e6a5ce8e JD |
157 | ("gtk" ,gtk+-2) |
158 | ("gtksourceview" ,gtksourceview) | |
c9dfa3c7 AE |
159 | ("zlib" ,zlib))) |
160 | (native-inputs | |
161 | `(("perl" ,perl) | |
162 | ("pkg-config" ,pkg-config))) | |
c9dfa3c7 AE |
163 | (home-page "http://www.gnu.org/software/pspp/") |
164 | (synopsis "Statistical analysis") | |
165 | (description | |
79c311b8 LC |
166 | "GNU PSPP is a statistical analysis program. It can perform |
167 | descriptive statistics, T-tests, linear regression and non-parametric tests. | |
168 | It features both a graphical interface as well as command-line input. PSPP is | |
169 | designed to interoperate with Gnumeric, LibreOffice and OpenOffice. Data can | |
170 | be imported from spreadsheets, text files and database sources and it can be | |
171 | output in text, PostScript, PDF or HTML.") | |
c9dfa3c7 | 172 | (license license:gpl3+))) |
da95c817 NK |
173 | |
174 | (define-public lapack | |
175 | (package | |
176 | (name "lapack") | |
566146ab | 177 | (version "3.5.0") |
da95c817 NK |
178 | (source |
179 | (origin | |
180 | (method url-fetch) | |
181 | (uri (string-append "http://www.netlib.org/lapack/lapack-" | |
182 | version ".tgz")) | |
183 | (sha256 | |
184 | (base32 | |
566146ab | 185 | "0lk3f97i9imqascnlf6wr5mjpyxqcdj73pgj97dj2mgvyg9z1n4s")))) |
da95c817 NK |
186 | (build-system cmake-build-system) |
187 | (home-page "http://www.netlib.org/lapack/") | |
188 | (inputs `(("fortran" ,gfortran-4.8) | |
189 | ("python" ,python-2))) | |
190 | (arguments | |
191 | `(#:modules ((guix build cmake-build-system) | |
192 | (guix build utils) | |
193 | (srfi srfi-1)) | |
8de3a578 | 194 | #:configure-flags '("-DBUILD_SHARED_LIBS:BOOL=YES") |
da95c817 | 195 | #:phases (alist-cons-before |
6a995754 LC |
196 | 'check 'patch-python |
197 | (lambda* (#:key inputs #:allow-other-keys) | |
198 | (let ((python (assoc-ref inputs "python"))) | |
199 | (substitute* "lapack_testing.py" | |
200 | (("/usr/bin/env python") python)))) | |
201 | %standard-phases))) | |
da95c817 NK |
202 | (synopsis "Library for numerical linear algebra") |
203 | (description | |
204 | "LAPACK is a Fortran 90 library for solving the most commonly occurring | |
205 | problems in numerical linear algebra.") | |
206 | (license (license:bsd-style "file://LICENSE" | |
207 | "See LICENSE in the distribution.")))) | |
73fed4f8 JD |
208 | |
209 | (define-public gnuplot | |
210 | (package | |
211 | (name "gnuplot") | |
212 | (version "4.6.3") | |
213 | (source | |
214 | (origin | |
215 | (method url-fetch) | |
216 | (uri (string-append "mirror://sourceforge/gnuplot/gnuplot/" | |
217 | version "/gnuplot-" version ".tar.gz")) | |
218 | (sha256 | |
219 | (base32 | |
220 | "1xd7gqdhlk7k1p9yyqf9vkk811nadc7m4si0q3nb6cpv4pxglpyz")))) | |
221 | (build-system gnu-build-system) | |
222 | (inputs `(("readline" ,readline) | |
223 | ("cairo" ,cairo) | |
224 | ("pango" ,pango) | |
225 | ("gd" ,gd))) | |
226 | (native-inputs `(("texlive" ,texlive) | |
227 | ("pkg-config" ,pkg-config))) | |
228 | (home-page "http://www.gnuplot.info") | |
229 | (synopsis "Command-line driven graphing utility") | |
230 | (description "Gnuplot is a portable command-line driven graphing | |
231 | utility. It was originally created to allow scientists and students to | |
232 | visualize mathematical functions and data interactively, but has grown to | |
233 | support many non-interactive uses such as web scripting. It is also used as a | |
234 | plotting engine by third-party applications like Octave.") | |
235 | ;; X11 Style with the additional restriction that derived works may only be | |
236 | ;; distributed as patches to the original. | |
237 | (license (license:fsf-free | |
668c06ac JD |
238 | "http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright")))) |
239 | ||
7ee3f1a2 JD |
240 | (define-public hdf5 |
241 | (package | |
242 | (name "hdf5") | |
243 | (version "1.8.12") | |
244 | (source | |
245 | (origin | |
246 | (method url-fetch) | |
247 | (uri (string-append "http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-" | |
248 | version ".tar.bz2")) | |
249 | (sha256 | |
250 | (base32 "0f9n0v3p3lwc7564791a39c6cn1d3dbrn7d1j3ikqsi27a8hy23d")))) | |
251 | (build-system gnu-build-system) | |
252 | (arguments | |
253 | `(#:phases | |
d4bf49b1 EB |
254 | (alist-cons-before |
255 | 'configure 'patch-configure | |
256 | (lambda _ | |
257 | (substitute* "configure" | |
258 | (("/bin/mv") "mv"))) | |
7ee3f1a2 JD |
259 | %standard-phases))) |
260 | (outputs '("out" "bin" "lib" "include")) | |
261 | (home-page "http://www.hdfgroup.org") | |
262 | (synopsis "Management suite for extremely large and complex data") | |
263 | (description "HDF5 is a suite that makes possible the management of | |
264 | extremely large and complex data collections.") | |
d4bf49b1 EB |
265 | (license (license:x11-style |
266 | "http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING")))) | |
7ee3f1a2 JD |
267 | |
268 | ||
668c06ac JD |
269 | ;; For a fully featured Octave, users are strongly recommended also to install |
270 | ;; the following packages: texinfo, less, ghostscript, gnuplot. | |
271 | (define-public octave | |
272 | (package | |
273 | (name "octave") | |
274 | (version "3.8.0") | |
275 | (source | |
276 | (origin | |
277 | (method url-fetch) | |
278 | (uri (string-append "mirror://gnu/octave/octave-" | |
279 | version ".tar.gz")) | |
280 | (sha256 | |
281 | (base32 | |
282 | "0ks9pr154syw0vb3jn6xsnrkkrbvf9y7i7gaxa28rz6ngxbxvq9l")))) | |
283 | (build-system gnu-build-system) | |
284 | (inputs | |
285 | `(("lapack" ,lapack) | |
286 | ("readline" ,readline) | |
287 | ("glpk" ,glpk) | |
288 | ("curl" ,curl) | |
289 | ("pcre" ,pcre) | |
290 | ("fltk" ,fltk) | |
291 | ("fontconfig" ,fontconfig) | |
292 | ("freetype" ,freetype) | |
7ee3f1a2 JD |
293 | ("hdf5-lib" ,hdf5 "lib") |
294 | ("hdf5-include" ,hdf5 "include") | |
668c06ac JD |
295 | ("libxft" ,libxft) |
296 | ("mesa" ,mesa) | |
297 | ("zlib" ,zlib))) | |
298 | (native-inputs | |
299 | `(("gfortran" ,gfortran-4.8) | |
300 | ("pkg-config" ,pkg-config) | |
301 | ("perl" ,perl) | |
302 | ;; The following inputs are not actually used in the build process. However, the | |
303 | ;; ./configure gratuitously tests for their existence and assumes that programs not | |
304 | ;; present at build time are also not, and can never be, available at run time! | |
305 | ;; If these inputs are therefore not present, support for them will be built out. | |
306 | ;; However, Octave will still run without them, albeit without the features they | |
307 | ;; provide. | |
308 | ("less" ,less) | |
309 | ("texinfo" ,texinfo) | |
310 | ("ghostscript" ,ghostscript) | |
311 | ("gnuplot" ,gnuplot))) | |
312 | (arguments | |
313 | `(#:configure-flags (list (string-append "--with-shell=" | |
314 | (assoc-ref %build-inputs "bash") | |
315 | "/bin/sh")))) | |
316 | (home-page "http://www.gnu.org/software/octave/") | |
317 | (synopsis "High-level language for numerical computation") | |
318 | (description "GNU Octave is a high-level interpreted language that is specialized | |
319 | for numerical computations. It can be used for both linear and non-linear | |
320 | applications and it provides great support for visualizing results. Work may | |
321 | be performed both at the interactive command-line as well as via script | |
322 | files.") | |
323 | (license license:gpl3+))) |