Commit | Line | Data |
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8f8b2451 | 1 | ;;; GNU Guix --- Functional package management for GNU |
12ed1216 | 2 | ;;; Copyright © 2013, 2014, 2015 Andreas Enge <andreas@enge.fr> |
da95c817 | 3 | ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org> |
668c06ac | 4 | ;;; Copyright © 2014 John Darrington <jmd@gnu.org> |
6c798540 | 5 | ;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org> |
df354a77 | 6 | ;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch> |
182d6311 | 7 | ;;; Copyright © 2014 Mathieu Lirzin <mathieu.lirzin@openmailbox.org> |
865a69dd | 8 | ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net> |
32158110 | 9 | ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> |
9aafbc0c | 10 | ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> |
8f8b2451 AE |
11 | ;;; |
12 | ;;; This file is part of GNU Guix. | |
13 | ;;; | |
14 | ;;; GNU Guix is free software; you can redistribute it and/or modify it | |
15 | ;;; under the terms of the GNU General Public License as published by | |
16 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
17 | ;;; your option) any later version. | |
18 | ;;; | |
19 | ;;; GNU Guix is distributed in the hope that it will be useful, but | |
20 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
21 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
22 | ;;; GNU General Public License for more details. | |
23 | ;;; | |
24 | ;;; You should have received a copy of the GNU General Public License | |
25 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. | |
26 | ||
27 | (define-module (gnu packages maths) | |
ec322be2 | 28 | #:use-module (ice-9 regex) |
8f8b2451 | 29 | #:use-module (gnu packages) |
b5b73a82 | 30 | #:use-module ((guix licenses) #:prefix license:) |
8f8b2451 AE |
31 | #:use-module (guix packages) |
32 | #:use-module (guix download) | |
279663ef | 33 | #:use-module (guix svn-download) |
0e2672ae | 34 | #:use-module (guix utils) |
da95c817 | 35 | #:use-module (guix build-system cmake) |
c9dfa3c7 | 36 | #:use-module (guix build-system gnu) |
3de01d3f EB |
37 | #:use-module (gnu packages algebra) |
38 | #:use-module (gnu packages bison) | |
e73b49fb | 39 | #:use-module (gnu packages check) |
3de01d3f | 40 | #:use-module (gnu packages cmake) |
c9dfa3c7 | 41 | #:use-module (gnu packages compression) |
668c06ac | 42 | #:use-module (gnu packages curl) |
57e544e8 | 43 | #:use-module (gnu packages elf) |
3de01d3f | 44 | #:use-module (gnu packages flex) |
668c06ac | 45 | #:use-module (gnu packages fltk) |
f3929800 | 46 | #:use-module (gnu packages fontutils) |
1dba6407 | 47 | #:use-module (gnu packages gettext) |
da95c817 | 48 | #:use-module (gnu packages gcc) |
73fed4f8 | 49 | #:use-module (gnu packages gd) |
668c06ac | 50 | #:use-module (gnu packages ghostscript) |
221ed17a | 51 | #:use-module (gnu packages glib) |
f3929800 | 52 | #:use-module (gnu packages gtk) |
668c06ac | 53 | #:use-module (gnu packages less) |
8731e527 | 54 | #:use-module (gnu packages lisp) |
5698b8b8 | 55 | #:use-module (gnu packages gnome) |
668c06ac JD |
56 | #:use-module (gnu packages xorg) |
57 | #:use-module (gnu packages gl) | |
8731e527 | 58 | #:use-module (gnu packages m4) |
d8c7eeb9 | 59 | #:use-module (gnu packages mpi) |
b92eee75 | 60 | #:use-module (gnu packages multiprecision) |
668c06ac | 61 | #:use-module (gnu packages pcre) |
5698b8b8 | 62 | #:use-module (gnu packages popt) |
c9dfa3c7 AE |
63 | #:use-module (gnu packages perl) |
64 | #:use-module (gnu packages pkg-config) | |
da95c817 | 65 | #:use-module (gnu packages python) |
c9dfa3c7 | 66 | #:use-module (gnu packages readline) |
2742f87e | 67 | #:use-module (gnu packages tbb) |
183e44ae | 68 | #:use-module (gnu packages tcsh) |
df354a77 | 69 | #:use-module (gnu packages tcl) |
668c06ac | 70 | #:use-module (gnu packages texinfo) |
73fed4f8 | 71 | #:use-module (gnu packages texlive) |
9aafbc0c | 72 | #:use-module (gnu packages wxwidgets) |
c12efc72 AE |
73 | #:use-module (gnu packages xml) |
74 | #:use-module (gnu packages zip)) | |
8f8b2451 AE |
75 | |
76 | (define-public units | |
77 | (package | |
78 | (name "units") | |
983815c8 | 79 | (version "2.11") |
8f8b2451 AE |
80 | (source (origin |
81 | (method url-fetch) | |
82 | (uri (string-append "mirror://gnu/units/units-" version | |
83 | ".tar.gz")) | |
84 | (sha256 (base32 | |
983815c8 | 85 | "1gjs3wc212aaiq4r76hx9nl1h3fa39n0ljwl9420d6ixl3rdmdjk")))) |
8f8b2451 AE |
86 | (build-system gnu-build-system) |
87 | (synopsis "Conversion between thousands of scales") | |
88 | (description | |
574e86f9 LC |
89 | "GNU Units converts numeric quantities between units of measure. It |
90 | can handle scale changes through adaptive usage of standard scale prefixes | |
91 | (micro-, kilo-, etc.). It can also handle nonlinear conversions such as | |
92 | Fahrenheit to Celsius. Its interpreter is powerful enough to be used | |
93 | effectively as a scientific calculator.") | |
8f8b2451 AE |
94 | (license license:gpl3+) |
95 | (home-page "http://www.gnu.org/software/units/"))) | |
c9dfa3c7 | 96 | |
61a529b4 RW |
97 | (define-public double-conversion |
98 | (package | |
99 | (name "double-conversion") | |
100 | (version "1.1.5") | |
101 | (source (origin | |
102 | (method url-fetch) | |
103 | (uri (string-append | |
104 | "https://github.com/floitsch/double-conversion/archive/v" | |
105 | version ".tar.gz")) | |
106 | (file-name (string-append name "-" version ".tar.gz")) | |
107 | (sha256 | |
108 | (base32 | |
109 | "0cnr8xhyjfxijay8ymkqcph3672wp2lj23qhdmr3m4kia5kpdf83")))) | |
110 | (build-system cmake-build-system) | |
111 | (arguments | |
112 | '(#:test-target "test" | |
113 | #:configure-flags '("-DBUILD_SHARED_LIBS=ON" | |
114 | "-DBUILD_TESTING=ON"))) | |
115 | (home-page "https://github.com/floitsch/double-conversion") | |
116 | (synopsis "Conversion routines for IEEE doubles") | |
117 | (description | |
118 | "The double-conversion library provides binary-decimal and decimal-binary | |
119 | routines for IEEE doubles. The library consists of efficient conversion | |
120 | routines that have been extracted from the V8 JavaScript engine.") | |
121 | (license license:bsd-3))) | |
122 | ||
182d6311 ML |
123 | (define-public dionysus |
124 | (package | |
125 | (name "dionysus") | |
126 | (version "1.3.0") | |
127 | (source (origin | |
128 | (method url-fetch) | |
129 | (uri (string-append "mirror://gnu/dionysus/dionysus-" version | |
130 | ".tar.gz")) | |
131 | (sha256 | |
132 | (base32 | |
133 | "1aqnvw6z33bzqgd1ga571pnx6vq2zrkckm1cz91grv45h4jr9vgs")))) | |
134 | (build-system gnu-build-system) | |
135 | (inputs `(("tcl" ,tcl))) ;for 'tclsh' | |
136 | (synopsis "Local search for universal constants and scientific values") | |
137 | (description | |
138 | "GNU Dionysus is a convenient system for quickly retrieving the values of | |
139 | mathematical constants used in science and engineering. Values can be | |
140 | searched using a simple command-line tool, choosing from three databases: | |
141 | universal constants, atomic numbers, and constants related to | |
142 | semiconductors.") | |
143 | (license license:gpl3+) | |
144 | (home-page "http://www.gnu.org/software/dionysus/"))) | |
145 | ||
88bd1804 AE |
146 | (define-public gsl |
147 | (package | |
148 | (name "gsl") | |
487da565 | 149 | (version "1.16") |
88bd1804 AE |
150 | (source |
151 | (origin | |
152 | (method url-fetch) | |
153 | (uri (string-append "mirror://gnu/gsl/gsl-" | |
154 | version ".tar.gz")) | |
155 | (sha256 | |
156 | (base32 | |
180a93c7 MW |
157 | "0lrgipi0z6559jqh82yx8n4xgnxkhzj46v96dl77hahdp58jzg3k")) |
158 | (patches (map search-patch '("gsl-poly-test-fix-pt1.patch" | |
159 | "gsl-poly-test-fix-pt2.patch"))))) | |
88bd1804 | 160 | (build-system gnu-build-system) |
71e0f288 | 161 | (arguments |
487da565 AE |
162 | `(#:parallel-tests? #f |
163 | #:phases | |
71e0f288 AE |
164 | (alist-replace |
165 | 'configure | |
166 | (lambda* (#:key target system outputs #:allow-other-keys #:rest args) | |
167 | (let ((configure (assoc-ref %standard-phases 'configure))) | |
168 | ;; disable numerically unstable test on i686, see thread at | |
169 | ;; http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html | |
170 | (if (string=? (or target system) "i686-linux") | |
171 | (substitute* "ode-initval2/Makefile.in" | |
172 | (("TESTS = \\$\\(check_PROGRAMS\\)") "TESTS ="))) | |
173 | (apply configure args))) | |
174 | %standard-phases))) | |
88bd1804 AE |
175 | (home-page "http://www.gnu.org/software/gsl/") |
176 | (synopsis "Numerical library for C and C++") | |
177 | (description | |
a22dc0c4 LC |
178 | "The GNU Scientific Library is a library for numerical analysis in C |
179 | and C++. It includes a wide range of mathematical routines, with over 1000 | |
180 | functions in total. Subject areas covered by the library include: | |
181 | differential equations, linear algebra, Fast Fourier Transforms and random | |
182 | numbers.") | |
88bd1804 AE |
183 | (license license:gpl3+))) |
184 | ||
b92eee75 AE |
185 | (define-public glpk |
186 | (package | |
187 | (name "glpk") | |
66fdf545 | 188 | (version "4.55") |
b92eee75 AE |
189 | (source |
190 | (origin | |
191 | (method url-fetch) | |
192 | (uri (string-append "mirror://gnu/glpk/glpk-" | |
193 | version ".tar.gz")) | |
194 | (sha256 | |
195 | (base32 | |
66fdf545 | 196 | "1rqx5fzj1mhkifilip5mkxybpj2wkniq5qcn8h1w2vkr2rzhs29p")))) |
b92eee75 AE |
197 | (build-system gnu-build-system) |
198 | (inputs | |
199 | `(("gmp" ,gmp))) | |
200 | (arguments | |
201 | `(#:configure-flags '("--with-gmp"))) | |
202 | (home-page "http://www.gnu.org/software/glpk/") | |
79c311b8 | 203 | (synopsis "GNU Linear Programming Kit, supporting the MathProg language") |
b92eee75 AE |
204 | (description |
205 | "GLPK is a C library for solving large-scale linear programming (LP), | |
206 | mixed integer programming (MIP), and other related problems. It supports the | |
207 | GNU MathProg modeling language, a subset of the AMPL language, and features a | |
208 | translator for the language. In addition to the C library, a stand-alone | |
209 | LP/MIP solver is included in the package.") | |
210 | (license license:gpl3+))) | |
211 | ||
c9dfa3c7 AE |
212 | (define-public pspp |
213 | (package | |
214 | (name "pspp") | |
3dcd7810 | 215 | (version "0.8.4") |
c9dfa3c7 AE |
216 | (source |
217 | (origin | |
218 | (method url-fetch) | |
219 | (uri (string-append "mirror://gnu/pspp/pspp-" | |
220 | version ".tar.gz")) | |
221 | (sha256 | |
222 | (base32 | |
3dcd7810 | 223 | "0b65q45x05ps95pph6glbg7ymdr638nfb0rk9x5x9qm5k073pk5z")))) |
c9dfa3c7 AE |
224 | (build-system gnu-build-system) |
225 | (inputs | |
f3929800 AE |
226 | `(("cairo" ,cairo) |
227 | ("fontconfig" ,fontconfig) | |
1dba6407 | 228 | ("gettext" ,gnu-gettext) |
c9dfa3c7 AE |
229 | ("gsl" ,gsl) |
230 | ("libxml2" ,libxml2) | |
f3929800 | 231 | ("pango" ,pango) |
c9dfa3c7 | 232 | ("readline" ,readline) |
e6a5ce8e JD |
233 | ("gtk" ,gtk+-2) |
234 | ("gtksourceview" ,gtksourceview) | |
c9dfa3c7 AE |
235 | ("zlib" ,zlib))) |
236 | (native-inputs | |
221ed17a EB |
237 | `(("glib" ,glib "bin") ;for glib-genmarshal |
238 | ("perl" ,perl) | |
c9dfa3c7 | 239 | ("pkg-config" ,pkg-config))) |
c9dfa3c7 AE |
240 | (home-page "http://www.gnu.org/software/pspp/") |
241 | (synopsis "Statistical analysis") | |
242 | (description | |
79c311b8 | 243 | "GNU PSPP is a statistical analysis program. It can perform |
c5779c93 LC |
244 | descriptive statistics, T-tests, linear regression and non-parametric tests. |
245 | It features both a graphical interface as well as command-line input. PSPP | |
246 | is designed to interoperate with Gnumeric, LibreOffice and OpenOffice. Data | |
247 | can be imported from spreadsheets, text files and database sources and it can | |
248 | be output in text, PostScript, PDF or HTML.") | |
c9dfa3c7 | 249 | (license license:gpl3+))) |
da95c817 | 250 | |
865a69dd RW |
251 | (define-public arpack-ng |
252 | (package | |
253 | (name "arpack-ng") | |
254 | (version "3.2.0") | |
255 | (source | |
256 | (origin | |
257 | (method url-fetch) | |
258 | (uri (string-append "https://github.com/opencollab/arpack-ng/archive/" | |
259 | version ".tar.gz")) | |
f586c877 | 260 | (file-name (string-append name "-" version ".tar.gz")) |
865a69dd RW |
261 | (sha256 |
262 | (base32 | |
263 | "1fwch6vipms1ispzg2djvbzv5wag36f1dmmr3xs3mbp6imfyhvff")))) | |
264 | (build-system gnu-build-system) | |
265 | (home-page "https://github.com/opencollab/arpack-ng") | |
266 | (inputs | |
267 | `(("lapack" ,lapack) | |
19afbea1 | 268 | ("fortran" ,gfortran))) |
865a69dd RW |
269 | (synopsis "Fortran subroutines for solving eigenvalue problems") |
270 | (description | |
271 | "ARPACK-NG is a collection of Fortran77 subroutines designed to solve | |
272 | large scale eigenvalue problems.") | |
166191b3 | 273 | (license (license:non-copyleft "file://COPYING" |
865a69dd RW |
274 | "See COPYING in the distribution.")))) |
275 | ||
da95c817 NK |
276 | (define-public lapack |
277 | (package | |
278 | (name "lapack") | |
566146ab | 279 | (version "3.5.0") |
da95c817 NK |
280 | (source |
281 | (origin | |
282 | (method url-fetch) | |
283 | (uri (string-append "http://www.netlib.org/lapack/lapack-" | |
284 | version ".tgz")) | |
285 | (sha256 | |
286 | (base32 | |
566146ab | 287 | "0lk3f97i9imqascnlf6wr5mjpyxqcdj73pgj97dj2mgvyg9z1n4s")))) |
da95c817 NK |
288 | (build-system cmake-build-system) |
289 | (home-page "http://www.netlib.org/lapack/") | |
19afbea1 | 290 | (inputs `(("fortran" ,gfortran) |
da95c817 NK |
291 | ("python" ,python-2))) |
292 | (arguments | |
06ed5982 | 293 | `(#:configure-flags '("-DBUILD_SHARED_LIBS:BOOL=YES") |
da95c817 | 294 | #:phases (alist-cons-before |
6a995754 LC |
295 | 'check 'patch-python |
296 | (lambda* (#:key inputs #:allow-other-keys) | |
297 | (let ((python (assoc-ref inputs "python"))) | |
298 | (substitute* "lapack_testing.py" | |
299 | (("/usr/bin/env python") python)))) | |
06ed5982 | 300 | %standard-phases))) |
da95c817 NK |
301 | (synopsis "Library for numerical linear algebra") |
302 | (description | |
303 | "LAPACK is a Fortran 90 library for solving the most commonly occurring | |
304 | problems in numerical linear algebra.") | |
166191b3 | 305 | (license (license:non-copyleft "file://LICENSE" |
da95c817 | 306 | "See LICENSE in the distribution.")))) |
73fed4f8 JD |
307 | |
308 | (define-public gnuplot | |
309 | (package | |
310 | (name "gnuplot") | |
311 | (version "4.6.3") | |
312 | (source | |
313 | (origin | |
314 | (method url-fetch) | |
315 | (uri (string-append "mirror://sourceforge/gnuplot/gnuplot/" | |
316 | version "/gnuplot-" version ".tar.gz")) | |
317 | (sha256 | |
318 | (base32 | |
319 | "1xd7gqdhlk7k1p9yyqf9vkk811nadc7m4si0q3nb6cpv4pxglpyz")))) | |
320 | (build-system gnu-build-system) | |
321 | (inputs `(("readline" ,readline) | |
322 | ("cairo" ,cairo) | |
323 | ("pango" ,pango) | |
324 | ("gd" ,gd))) | |
325 | (native-inputs `(("texlive" ,texlive) | |
326 | ("pkg-config" ,pkg-config))) | |
327 | (home-page "http://www.gnuplot.info") | |
328 | (synopsis "Command-line driven graphing utility") | |
329 | (description "Gnuplot is a portable command-line driven graphing | |
35b9e423 | 330 | utility. It was originally created to allow scientists and students to |
73fed4f8 | 331 | visualize mathematical functions and data interactively, but has grown to |
35b9e423 | 332 | support many non-interactive uses such as web scripting. It is also used as a |
73fed4f8 JD |
333 | plotting engine by third-party applications like Octave.") |
334 | ;; X11 Style with the additional restriction that derived works may only be | |
335 | ;; distributed as patches to the original. | |
336 | (license (license:fsf-free | |
668c06ac JD |
337 | "http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright")))) |
338 | ||
7ee3f1a2 JD |
339 | (define-public hdf5 |
340 | (package | |
341 | (name "hdf5") | |
342 | (version "1.8.12") | |
343 | (source | |
344 | (origin | |
345 | (method url-fetch) | |
93c3de92 AE |
346 | (uri (string-append "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" |
347 | version "/src/hdf5-" | |
7ee3f1a2 JD |
348 | version ".tar.bz2")) |
349 | (sha256 | |
350 | (base32 "0f9n0v3p3lwc7564791a39c6cn1d3dbrn7d1j3ikqsi27a8hy23d")))) | |
351 | (build-system gnu-build-system) | |
12ed1216 AE |
352 | (inputs |
353 | `(("zlib" ,zlib))) | |
7ee3f1a2 JD |
354 | (arguments |
355 | `(#:phases | |
d4bf49b1 EB |
356 | (alist-cons-before |
357 | 'configure 'patch-configure | |
358 | (lambda _ | |
359 | (substitute* "configure" | |
360 | (("/bin/mv") "mv"))) | |
7ee3f1a2 | 361 | %standard-phases))) |
7ee3f1a2 | 362 | (home-page "http://www.hdfgroup.org") |
516e93f8 | 363 | (synopsis "Management suite for extremely large and complex data") |
7ee3f1a2 JD |
364 | (description "HDF5 is a suite that makes possible the management of |
365 | extremely large and complex data collections.") | |
d4bf49b1 EB |
366 | (license (license:x11-style |
367 | "http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING")))) | |
7ee3f1a2 JD |
368 | |
369 | ||
668c06ac JD |
370 | ;; For a fully featured Octave, users are strongly recommended also to install |
371 | ;; the following packages: texinfo, less, ghostscript, gnuplot. | |
372 | (define-public octave | |
373 | (package | |
374 | (name "octave") | |
32158110 | 375 | (version "3.8.2") |
668c06ac JD |
376 | (source |
377 | (origin | |
378 | (method url-fetch) | |
379 | (uri (string-append "mirror://gnu/octave/octave-" | |
380 | version ".tar.gz")) | |
381 | (sha256 | |
382 | (base32 | |
32158110 | 383 | "05slz8yx8k91fqlnfr1f0vni95iq9qmchz41c7nf4isn3b2fjn7j")))) |
668c06ac JD |
384 | (build-system gnu-build-system) |
385 | (inputs | |
386 | `(("lapack" ,lapack) | |
387 | ("readline" ,readline) | |
388 | ("glpk" ,glpk) | |
1ec78e9d EB |
389 | ("fftw" ,fftw) |
390 | ("fftwf" ,fftwf) | |
391 | ("arpack" ,arpack-ng) | |
668c06ac JD |
392 | ("curl" ,curl) |
393 | ("pcre" ,pcre) | |
394 | ("fltk" ,fltk) | |
395 | ("fontconfig" ,fontconfig) | |
396 | ("freetype" ,freetype) | |
40029cbe | 397 | ("hdf5" ,hdf5) |
668c06ac JD |
398 | ("libxft" ,libxft) |
399 | ("mesa" ,mesa) | |
1ec78e9d | 400 | ("glu" ,glu) |
668c06ac JD |
401 | ("zlib" ,zlib))) |
402 | (native-inputs | |
19afbea1 | 403 | `(("gfortran" ,gfortran) |
668c06ac JD |
404 | ("pkg-config" ,pkg-config) |
405 | ("perl" ,perl) | |
1ec78e9d EB |
406 | ;; The following inputs are not actually used in the build process. |
407 | ;; However, the ./configure gratuitously tests for their existence and | |
408 | ;; assumes that programs not present at build time are also not, and | |
409 | ;; can never be, available at run time! If these inputs are therefore | |
410 | ;; not present, support for them will be built out. However, Octave | |
411 | ;; will still run without them, albeit without the features they | |
668c06ac JD |
412 | ;; provide. |
413 | ("less" ,less) | |
414 | ("texinfo" ,texinfo) | |
415 | ("ghostscript" ,ghostscript) | |
416 | ("gnuplot" ,gnuplot))) | |
417 | (arguments | |
418 | `(#:configure-flags (list (string-append "--with-shell=" | |
419 | (assoc-ref %build-inputs "bash") | |
420 | "/bin/sh")))) | |
421 | (home-page "http://www.gnu.org/software/octave/") | |
422 | (synopsis "High-level language for numerical computation") | |
1ec78e9d EB |
423 | (description "GNU Octave is a high-level interpreted language that is |
424 | specialized for numerical computations. It can be used for both linear and | |
425 | non-linear applications and it provides great support for visualizing results. | |
426 | Work may be performed both at the interactive command-line as well as via | |
427 | script files.") | |
668c06ac | 428 | (license license:gpl3+))) |
3de01d3f EB |
429 | |
430 | (define-public gmsh | |
431 | (package | |
432 | (name "gmsh") | |
433 | (version "2.8.4") | |
434 | (source | |
435 | (origin | |
436 | (method url-fetch) | |
437 | (uri (string-append "http://www.geuz.org/gmsh/src/gmsh-" | |
438 | version "-source.tgz")) | |
439 | (sha256 | |
440 | (base32 "0jv2yvk28w86rx5mvjkb0w12ff2jxih7axnpvznpd295lg5jg7hr")) | |
441 | (modules '((guix build utils))) | |
442 | (snippet | |
443 | ;; Remove non-free METIS code | |
444 | '(delete-file-recursively "contrib/Metis")))) | |
445 | (build-system cmake-build-system) | |
3de01d3f EB |
446 | (propagated-inputs |
447 | `(("fltk" ,fltk) | |
19afbea1 | 448 | ("gfortran" ,gfortran) |
3de01d3f | 449 | ("gmp" ,gmp) |
40029cbe | 450 | ("hdf5" ,hdf5) |
3de01d3f EB |
451 | ("lapack" ,lapack) |
452 | ("mesa" ,mesa) | |
85f41902 | 453 | ("glu" ,glu) |
3de01d3f EB |
454 | ("libx11" ,libx11) |
455 | ("libxext" ,libxext))) | |
456 | (arguments | |
457 | `(#:configure-flags `("-DENABLE_METIS:BOOL=OFF" | |
458 | "-DENABLE_BUILD_SHARED:BOOL=ON" | |
459 | "-DENABLE_BUILD_DYNAMIC:BOOL=ON"))) | |
460 | (home-page "http://www.geuz.org/gmsh/") | |
461 | (synopsis "3D finite element grid generator") | |
edf684ef EB |
462 | (description "Gmsh is a 3D finite element grid generator with a built-in |
463 | CAD engine and post-processor. Its design goal is to provide a fast, light | |
464 | and user-friendly meshing tool with parametric input and advanced | |
465 | visualization capabilities. Gmsh is built around four modules: geometry, | |
466 | mesh, solver and post-processing. The specification of any input to these | |
467 | modules is done either interactively using the graphical user interface or in | |
468 | ASCII text files using Gmsh's own scripting language.") | |
3de01d3f | 469 | (license license:gpl2+))) |
b9100e2f EB |
470 | |
471 | (define-public petsc | |
472 | (package | |
473 | (name "petsc") | |
474 | (version "3.4.4") | |
475 | (source | |
476 | (origin | |
477 | (method url-fetch) | |
478 | ;; The *-lite-* tarball does not contain the *large* documentation | |
479 | (uri (string-append "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/" | |
480 | "petsc-lite-" version ".tar.gz")) | |
481 | (sha256 | |
482 | (base32 "0v5dg6dhdjpi5ianvd4mm6hsvxzv1bsxwnh9f9myag0a0d9xk9iv")) | |
483 | (patches | |
484 | (list (search-patch "petsc-fix-threadcomm.patch"))))) | |
485 | (build-system gnu-build-system) | |
486 | (native-inputs | |
487 | `(("python" ,python-2) | |
488 | ("perl" ,perl))) | |
489 | (inputs | |
19afbea1 | 490 | `(("gfortran" ,gfortran) |
b9100e2f | 491 | ("lapack" ,lapack) |
f258212d | 492 | ("superlu" ,superlu) |
b9100e2f EB |
493 | ;; leaving out hdf5 and fftw, as petsc expects them to be built with mpi |
494 | ;; leaving out opengl, as configuration seems to only be for mac | |
495 | )) | |
496 | (arguments | |
497 | `(#:test-target "test" | |
498 | #:parallel-build? #f | |
499 | #:configure-flags | |
500 | `("--with-mpi=0" | |
f258212d EB |
501 | "--with-openmp=1" |
502 | "--with-superlu=1" | |
503 | ,(string-append "--with-superlu-include=" | |
504 | (assoc-ref %build-inputs "superlu") "/include") | |
505 | ,(string-append "--with-superlu-lib=" | |
506 | (assoc-ref %build-inputs "superlu") "/lib/libsuperlu.a")) | |
b9100e2f EB |
507 | #:phases |
508 | (alist-replace | |
509 | 'configure | |
510 | ;; PETSc's configure script is actually a python script, so we can't | |
511 | ;; run it with bash. | |
512 | (lambda* (#:key outputs (configure-flags '()) | |
513 | #:allow-other-keys) | |
514 | (let* ((prefix (assoc-ref outputs "out")) | |
515 | (flags `(,(string-append "--prefix=" prefix) | |
516 | ,@configure-flags))) | |
517 | (format #t "build directory: ~s~%" (getcwd)) | |
518 | (format #t "configure flags: ~s~%" flags) | |
519 | (zero? (apply system* "./configure" flags)))) | |
520 | (alist-cons-after | |
10b11968 EB |
521 | 'configure 'clean-local-references |
522 | ;; Try to keep build directory names from leaking into compiled code | |
b9100e2f | 523 | (lambda* (#:key inputs outputs #:allow-other-keys) |
10b11968 EB |
524 | (let ((out (assoc-ref outputs "out"))) |
525 | (substitute* (find-files "." "^petsc(conf|machineinfo).h$") | |
526 | (((getcwd)) out)))) | |
527 | (alist-cons-after | |
528 | 'install 'clean-install | |
529 | ;; Try to keep installed files from leaking build directory names. | |
530 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
531 | (let ((out (assoc-ref outputs "out")) | |
532 | (fortran (assoc-ref inputs "gfortran"))) | |
533 | (substitute* (map (lambda (file) | |
534 | (string-append out "/" file)) | |
535 | '("conf/petscvariables" | |
536 | "conf/PETScConfig.cmake")) | |
537 | (((getcwd)) out)) | |
538 | ;; Make compiler references point to the store | |
539 | (substitute* (string-append out "/conf/petscvariables") | |
540 | (("= g(cc|\\+\\+|fortran)" _ suffix) | |
541 | (string-append "= " fortran "/bin/g" suffix))) | |
542 | ;; PETSc installs some build logs, which aren't necessary. | |
543 | (for-each (lambda (file) | |
544 | (let ((f (string-append out "/" file))) | |
545 | (when (file-exists? f) | |
546 | (delete-file f)))) | |
547 | '("conf/configure.log" | |
548 | "conf/make.log" | |
549 | "conf/test.log" | |
550 | "conf/error.log" | |
551 | "conf/RDict.db" | |
552 | ;; Once installed, should uninstall with Guix | |
553 | "conf/uninstall.py")))) | |
554 | %standard-phases))))) | |
b9100e2f | 555 | (home-page "http://www.mcs.anl.gov/petsc") |
16ecf3ff | 556 | (synopsis "Library to solve PDEs") |
b9100e2f EB |
557 | (description "PETSc, pronounced PET-see (the S is silent), is a suite of |
558 | data structures and routines for the scalable (parallel) solution of | |
559 | scientific applications modeled by partial differential equations.") | |
166191b3 | 560 | (license (license:non-copyleft |
b9100e2f EB |
561 | "http://www.mcs.anl.gov/petsc/documentation/copyright.html")))) |
562 | ||
563 | (define-public petsc-complex | |
564 | (package (inherit petsc) | |
565 | (name "petsc-complex") | |
566 | (arguments | |
567 | (substitute-keyword-arguments (package-arguments petsc) | |
568 | ((#:configure-flags cf) | |
569 | `(cons "--with-scalar-type=complex" ,cf)))) | |
16ecf3ff | 570 | (synopsis "Library to solve PDEs (with complex scalars)"))) |
183e44ae | 571 | |
d8c7eeb9 EB |
572 | (define-public petsc-openmpi |
573 | (package (inherit petsc) | |
574 | (name "petsc-openmpi") | |
575 | (inputs | |
576 | `(("openmpi" ,openmpi) | |
577 | ,@(package-inputs petsc))) | |
578 | (arguments | |
579 | (substitute-keyword-arguments (package-arguments petsc) | |
580 | ((#:configure-flags cf) | |
581 | ``("--with-mpiexec=mpirun" | |
582 | ,(string-append "--with-mpi-dir=" | |
583 | (assoc-ref %build-inputs "openmpi")) | |
584 | ,@(delete "--with-mpi=0" ,cf))))) | |
16ecf3ff | 585 | (synopsis "Library to solve PDEs (with MPI support)"))) |
d8c7eeb9 EB |
586 | |
587 | (define-public petsc-complex-openmpi | |
588 | (package (inherit petsc-complex) | |
589 | (name "petsc-complex-openmpi") | |
590 | (inputs | |
591 | `(("openmpi" ,openmpi) | |
592 | ,@(package-inputs petsc-complex))) | |
593 | (arguments | |
594 | (substitute-keyword-arguments (package-arguments petsc-complex) | |
595 | ((#:configure-flags cf) | |
596 | ``("--with-mpiexec=mpirun" | |
597 | ,(string-append "--with-mpi-dir=" | |
598 | (assoc-ref %build-inputs "openmpi")) | |
599 | ,@(delete "--with-mpi=0" ,cf))))) | |
16ecf3ff | 600 | (synopsis "Library to solve PDEs (with complex scalars and MPI support)"))) |
d8c7eeb9 | 601 | |
183e44ae EB |
602 | (define-public superlu |
603 | (package | |
604 | (name "superlu") | |
605 | (version "4.3") | |
606 | (source | |
607 | (origin | |
608 | (method url-fetch) | |
609 | (uri (string-append "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/" | |
610 | "superlu_" version ".tar.gz")) | |
611 | (sha256 | |
612 | (base32 "10b785s9s4x0m9q7ihap09275pq4km3k2hk76jiwdfdr5qr2168n")))) | |
613 | (build-system gnu-build-system) | |
614 | (native-inputs | |
615 | `(("tcsh" ,tcsh))) | |
616 | (inputs | |
617 | `(("lapack" ,lapack) | |
19afbea1 | 618 | ("gfortran" ,gfortran))) |
183e44ae EB |
619 | (arguments |
620 | `(#:parallel-build? #f | |
621 | #:tests? #f ;tests are run as part of `make all` | |
622 | #:phases | |
623 | (alist-replace | |
624 | 'configure | |
625 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
626 | (call-with-output-file "make.inc" | |
627 | (lambda (port) | |
628 | (format port " | |
629 | PLAT = | |
630 | SuperLUroot = ~a | |
631 | SUPERLULIB = ~a/lib/libsuperlu.a | |
632 | TMGLIB = libtmglib.a | |
633 | BLASDEF = -DUSE_VENDOR_BLAS | |
634 | BLASLIB = -L~a/lib -lblas | |
635 | LIBS = $(SUPERLULIB) $(BLASLIB) | |
636 | ARCH = ar | |
637 | ARCHFLAGS = cr | |
638 | RANLIB = ranlib | |
639 | CC = gcc | |
640 | PIC = -fPIC | |
641 | CFLAGS = -O3 -DPRNTlevel=0 $(PIC) | |
642 | NOOPTS = -O0 $(PIC) | |
643 | FORTRAN = gfortran | |
644 | FFLAGS = -O2 $(PIC) | |
645 | LOADER = $(CC) | |
646 | CDEFS = -DAdd_" | |
647 | (getcwd) | |
648 | (assoc-ref outputs "out") | |
649 | (assoc-ref inputs "lapack"))))) | |
650 | (alist-cons-before | |
651 | 'build 'create-install-directories | |
652 | (lambda* (#:key outputs #:allow-other-keys) | |
653 | (for-each | |
654 | (lambda (dir) | |
655 | (mkdir-p (string-append (assoc-ref outputs "out") | |
656 | "/" dir))) | |
657 | '("lib" "include"))) | |
658 | (alist-replace | |
659 | 'install | |
660 | (lambda* (#:key outputs #:allow-other-keys) | |
661 | ;; Library is placed in lib during the build phase. Copy over | |
662 | ;; headers to include. | |
663 | (let* ((out (assoc-ref outputs "out")) | |
664 | (incdir (string-append out "/include"))) | |
665 | (for-each (lambda (file) | |
666 | (let ((base (basename file))) | |
667 | (format #t "installing `~a' to `~a'~%" | |
668 | base incdir) | |
669 | (copy-file file | |
670 | (string-append incdir "/" base)))) | |
671 | (find-files "SRC" ".*\\.h$")))) | |
672 | %standard-phases))))) | |
673 | (home-page "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/") | |
674 | (synopsis "Supernodal direct solver for sparse linear systems") | |
675 | (description | |
676 | "SuperLU is a general purpose library for the direct solution of large, | |
677 | sparse, nonsymmetric systems of linear equations on high performance machines. | |
678 | The library is written in C and is callable from either C or Fortran. The | |
679 | library routines perform an LU decomposition with partial pivoting and | |
680 | triangular system solves through forward and back substitution. The library | |
681 | also provides threshold-based ILU factorization preconditioners.") | |
682 | (license license:bsd-3))) | |
f8ed036a | 683 | |
a54aefea EB |
684 | (define-public superlu-dist |
685 | (package | |
686 | (name "superlu-dist") | |
687 | (version "3.3") | |
688 | (source | |
689 | (origin | |
690 | (method url-fetch) | |
691 | (uri (string-append "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/" | |
692 | "superlu_dist_" version ".tar.gz")) | |
693 | (sha256 | |
694 | (base32 "1hnak09yxxp026blq8zhrl7685yip16svwngh1wysqxf8z48vzfj")) | |
695 | (patches (list (search-patch "superlu-dist-scotchmetis.patch"))))) | |
696 | (build-system gnu-build-system) | |
697 | (native-inputs | |
698 | `(("tcsh" ,tcsh))) | |
699 | (inputs | |
19afbea1 | 700 | `(("gfortran" ,gfortran))) |
a54aefea EB |
701 | (propagated-inputs |
702 | `(("openmpi" ,openmpi) ;headers include MPI heades | |
703 | ("lapack" ,lapack) ;required to link with output library | |
704 | ("pt-scotch" ,pt-scotch))) ;same | |
705 | (arguments | |
706 | `(#:parallel-build? #f ;race conditions using ar | |
707 | #:phases | |
708 | (alist-replace | |
709 | 'configure | |
710 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
711 | (call-with-output-file "make.inc" | |
712 | (lambda (port) | |
713 | (format port " | |
714 | PLAT = | |
715 | DSuperLUroot = ~a | |
716 | DSUPERLULIB = ~a/lib/libsuperlu_dist.a | |
717 | BLASDEF = -DUSE_VENDOR_BLAS | |
718 | BLASLIB = -L~a/lib -lblas | |
719 | PARMETISLIB = -L~a/lib \ | |
720 | -lptscotchparmetis -lptscotch -lptscotcherr -lptscotcherrexit \ | |
721 | -lscotch -lscotcherr -lscotcherrexit | |
722 | METISLIB = -L~:*~a/lib \ | |
723 | -lscotchmetis -lscotch -lscotcherr -lscotcherrexit | |
724 | LIBS = $(DSUPERLULIB) $(PARMETISLIB) $(METISLIB) $(BLASLIB) | |
725 | ARCH = ar | |
726 | ARCHFLAGS = cr | |
727 | RANLIB = ranlib | |
728 | CC = mpicc | |
729 | PIC = -fPIC | |
730 | CFLAGS = -O3 -g -DPRNTlevel=0 $(PIC) | |
731 | NOOPTS = -O0 -g $(PIC) | |
732 | FORTRAN = mpifort | |
733 | FFLAGS = -O2 -g $(PIC) | |
734 | LOADER = $(CC) | |
735 | CDEFS = -DAdd_" | |
736 | (getcwd) | |
737 | (assoc-ref outputs "out") | |
738 | (assoc-ref inputs "lapack") | |
739 | (assoc-ref inputs "pt-scotch"))))) | |
740 | (alist-cons-after | |
741 | 'unpack 'remove-broken-symlinks | |
742 | (lambda _ | |
743 | (for-each delete-file | |
744 | (find-files "MAKE_INC" "\\.#make\\..*"))) | |
745 | (alist-cons-before | |
746 | 'build 'create-install-directories | |
747 | (lambda* (#:key outputs #:allow-other-keys) | |
748 | (for-each | |
749 | (lambda (dir) | |
750 | (mkdir-p (string-append (assoc-ref outputs "out") | |
751 | "/" dir))) | |
752 | '("lib" "include"))) | |
753 | (alist-replace | |
754 | 'check | |
755 | (lambda _ | |
756 | (with-directory-excursion "EXAMPLE" | |
757 | (and | |
758 | (zero? (system* "mpirun" "-n" "2" | |
759 | "./pddrive" "-r" "1" "-c" "2" "g20.rua")) | |
760 | (zero? (system* "mpirun" "-n" "2" | |
761 | "./pzdrive" "-r" "1" "-c" "2" "cg20.cua"))))) | |
762 | (alist-replace | |
763 | 'install | |
764 | (lambda* (#:key outputs #:allow-other-keys) | |
765 | ;; Library is placed in lib during the build phase. Copy over | |
766 | ;; headers to include. | |
767 | (let* ((out (assoc-ref outputs "out")) | |
768 | (incdir (string-append out "/include"))) | |
769 | (for-each (lambda (file) | |
770 | (let ((base (basename file))) | |
771 | (format #t "installing `~a' to `~a'~%" | |
772 | base incdir) | |
773 | (copy-file file | |
774 | (string-append incdir "/" base)))) | |
775 | (find-files "SRC" ".*\\.h$")))) | |
776 | %standard-phases))))))) | |
777 | (home-page (package-home-page superlu)) | |
778 | (synopsis "Parallel supernodal direct solver") | |
779 | (description | |
780 | "SuperLU_DIST is a parallel extension to the serial SuperLU library. | |
781 | It is targeted for distributed memory parallel machines. SuperLU_DIST is | |
782 | implemented in ANSI C, and MPI for communications.") | |
783 | (license license:bsd-3))) | |
784 | ||
f8ed036a EB |
785 | (define-public scotch |
786 | (package | |
787 | (name "scotch") | |
6c798540 | 788 | (version "6.0.4") |
f8ed036a EB |
789 | (source |
790 | (origin | |
791 | (method url-fetch) | |
6c798540 | 792 | (uri (string-append "https://gforge.inria.fr/frs/download.php/34618/" |
f8ed036a EB |
793 | "scotch_" version ".tar.gz")) |
794 | (sha256 | |
6c798540 EB |
795 | (base32 "1ir088mvrqggyqdkx9qfynmiaffqbyih5qfl5mga2nrlm1qlsgzm")) |
796 | (patches (list (search-patch "scotch-test-threading.patch") | |
797 | (search-patch "pt-scotch-build-parallelism.patch"))))) | |
f8ed036a EB |
798 | (build-system gnu-build-system) |
799 | (inputs | |
800 | `(("zlib" ,zlib) | |
801 | ("flex" ,flex) | |
802 | ("bison" ,bison))) | |
803 | (arguments | |
804 | `(#:phases | |
d6602ee9 EB |
805 | (modify-phases %standard-phases |
806 | (add-after | |
807 | 'unpack 'chdir-to-src | |
808 | (lambda _ (chdir "src"))) | |
809 | (replace | |
810 | 'configure | |
811 | (lambda _ | |
812 | (call-with-output-file "Makefile.inc" | |
813 | (lambda (port) | |
814 | (format port " | |
f8ed036a EB |
815 | EXE = |
816 | LIB = .a | |
817 | OBJ = .o | |
818 | MAKE = make | |
819 | AR = ar | |
820 | ARFLAGS = -ruv | |
821 | CCS = gcc | |
822 | CCP = mpicc | |
823 | CCD = gcc | |
824 | CPPFLAGS =~{ -D~a~} | |
6c798540 | 825 | CFLAGS = -O2 -g -fPIC $(CPPFLAGS) |
f8ed036a EB |
826 | LDFLAGS = -lz -lm -lrt -lpthread |
827 | CP = cp | |
828 | LEX = flex -Pscotchyy -olex.yy.c | |
829 | LN = ln | |
830 | MKDIR = mkdir | |
831 | MV = mv | |
832 | RANLIB = ranlib | |
833 | YACC = bison -pscotchyy -y -b y | |
834 | " | |
d6602ee9 EB |
835 | '("COMMON_FILE_COMPRESS_GZ" |
836 | "COMMON_PTHREAD" | |
837 | "COMMON_RANDOM_FIXED_SEED" | |
838 | ;; XXX: Causes invalid frees in superlu-dist tests | |
839 | ;; "SCOTCH_PTHREAD" | |
840 | ;; "SCOTCH_PTHREAD_NUMBER=2" | |
841 | "restrict=__restrict")))))) | |
842 | (replace | |
f8ed036a EB |
843 | 'install |
844 | (lambda* (#:key outputs #:allow-other-keys) | |
845 | (let ((out (assoc-ref outputs "out"))) | |
846 | (mkdir out) | |
847 | (zero? (system* "make" | |
848 | (string-append "prefix=" out) | |
d6602ee9 | 849 | "install")))))))) |
f8ed036a EB |
850 | (home-page "http://www.labri.fr/perso/pelegrin/scotch/") |
851 | (synopsis "Programs and libraries for graph algorithms") | |
852 | (description "SCOTCH is a set of programs and libraries which implement | |
853 | the static mapping and sparse matrix reordering algorithms developed within | |
854 | the SCOTCH project. Its purpose is to apply graph theory, with a divide and | |
855 | conquer approach, to scientific computing problems such as graph and mesh | |
856 | partitioning, static mapping, and sparse matrix ordering, in application | |
857 | domains ranging from structural mechanics to operating systems or | |
858 | bio-chemistry.") | |
859 | ;; See LICENSE_en.txt | |
860 | (license license:cecill-c))) | |
6acb4adb EB |
861 | |
862 | (define-public pt-scotch | |
863 | (package (inherit scotch) | |
864 | (name "pt-scotch") | |
865 | (propagated-inputs | |
866 | `(("openmpi" ,openmpi))) ;Headers include MPI headers | |
867 | (arguments | |
868 | (substitute-keyword-arguments (package-arguments scotch) | |
869 | ((#:phases scotch-phases) | |
d6602ee9 EB |
870 | `(modify-phases ,scotch-phases |
871 | (replace | |
872 | 'build | |
873 | ;; TODO: Would like to add parallelism here | |
874 | (lambda _ | |
875 | (and | |
876 | (zero? (system* "make" "ptscotch")) | |
877 | ;; Install the serial metis compatibility library | |
878 | (zero? (system* "make" "-C" "libscotchmetis" "install"))))) | |
879 | (replace | |
880 | 'check | |
881 | (lambda _ (zero? (system* "make" "ptcheck")))))))) | |
6acb4adb | 882 | (synopsis "Programs and libraries for graph algorithms (with MPI)"))) |
5698b8b8 JD |
883 | |
884 | (define-public gsegrafix | |
885 | (package | |
886 | (name "gsegrafix") | |
887 | (version "1.0.6") | |
888 | (source | |
889 | (origin | |
890 | (method url-fetch) | |
891 | (uri (string-append "mirror://gnu/" name "/" name "-" | |
892 | version ".tar.gz")) | |
893 | (sha256 | |
894 | (base32 | |
895 | "1b13hvx063zv970y750bx41wpx6hwd5ngjhbdrna8w8yy5kmxcda")))) | |
896 | (build-system gnu-build-system) | |
897 | (arguments | |
898 | `(#:configure-flags '("LDFLAGS=-lm"))) | |
899 | (inputs | |
900 | `(("libgnomecanvas" ,libgnomecanvas) | |
901 | ("libbonoboui" ,libbonoboui) | |
902 | ("libgnomeui" ,libgnomeui) | |
903 | ("libgnomeprintui" ,libgnomeprintui) | |
904 | ("popt" ,popt))) | |
905 | (native-inputs | |
906 | `(("pkg-config" ,pkg-config))) | |
907 | (home-page "http://www.gnu.org/software/gsegrafix/") | |
908 | (synopsis "GNOME application to create scientific and engineering plots") | |
909 | (description "GSEGrafix is an application which produces high-quality graphical | |
910 | plots for science and engineering. Plots are specified via simple ASCII | |
911 | parameter files and data files and are presented in an anti-aliased GNOME | |
912 | canvas. The program supports rectangular two-dimensional plots, histograms, | |
913 | polar-axis plots and three-dimensional plots. Plots can be printed or saved | |
914 | to BMP, JPEG or PNG image formats.") | |
915 | (license license:gpl3+))) | |
8731e527 JD |
916 | |
917 | (define-public maxima | |
918 | (package | |
919 | (name "maxima") | |
77af7b24 | 920 | (version "5.36.1") |
8731e527 JD |
921 | (source |
922 | (origin | |
923 | (method url-fetch) | |
924 | (uri (string-append "mirror://sourceforge/maxima/Maxima-source/" | |
925 | version "-source/" name "-" version ".tar.gz")) | |
926 | (sha256 | |
927 | (base32 | |
77af7b24 MW |
928 | "0x1rk659sn3cq0n5c90848ilzr1gb1wf0072fl6jhkdq00qgh2s0")) |
929 | (patches (list (search-patch "maxima-defsystem-mkdir.patch"))))) | |
8731e527 | 930 | (build-system gnu-build-system) |
df354a77 FB |
931 | (inputs |
932 | `(("gcl" ,gcl) | |
933 | ("gnuplot" ,gnuplot) ;for plots | |
f36afe4d | 934 | ("tk" ,tk))) ;Tcl/Tk is used by 'xmaxima' |
df354a77 FB |
935 | (native-inputs |
936 | `(("texinfo" ,texinfo) | |
937 | ("perl" ,perl))) | |
8731e527 | 938 | (arguments |
df354a77 FB |
939 | `(#:configure-flags |
940 | (list "--enable-gcl" | |
941 | (string-append "--with-posix-shell=" | |
942 | (assoc-ref %build-inputs "bash") | |
943 | "/bin/sh") | |
944 | (string-append "--with-wish=" | |
945 | (assoc-ref %build-inputs "tk") | |
946 | "/bin/wish" | |
947 | (let ((v ,(package-version tk))) | |
948 | (string-take v (string-index-right v #\.))))) | |
df354a77 | 949 | ;; By default Maxima attempts to write temporary files to |
77af7b24 MW |
950 | ;; '/tmp/nix-build-maxima-*', which won't exist at run time. |
951 | ;; Work around that. | |
df354a77 | 952 | #:make-flags (list "TMPDIR=/tmp") |
df354a77 | 953 | #:phases (alist-cons-before |
8731e527 | 954 | 'check 'pre-check |
df354a77 | 955 | (lambda _ |
8731e527 | 956 | (chmod "src/maxima" #o555)) |
f36afe4d FB |
957 | ;; Make sure the doc and emacs files are found in the |
958 | ;; standard location. Also configure maxima to find gnuplot | |
959 | ;; without having it on the PATH. | |
960 | (alist-cons-after | |
961 | 'install 'post-install | |
962 | (lambda* (#:key outputs inputs #:allow-other-keys) | |
963 | (let* ((gnuplot (assoc-ref inputs "gnuplot")) | |
964 | (out (assoc-ref outputs "out")) | |
965 | (datadir (string-append out "/share/maxima/" ,version))) | |
966 | (with-directory-excursion out | |
967 | (mkdir-p "share/emacs") | |
968 | (mkdir-p "share/doc") | |
969 | (symlink | |
970 | (string-append datadir "/emacs/") | |
971 | (string-append out "/share/emacs/site-lisp")) | |
972 | (symlink | |
973 | (string-append datadir "/doc/") | |
974 | (string-append out "/share/doc/maxima")) | |
975 | (with-atomic-file-replacement | |
976 | (string-append datadir "/share/maxima-init.lisp") | |
977 | (lambda (in out) | |
978 | (format out "~a ~s~a~%" | |
979 | "(setf $gnuplot_command " | |
980 | (string-append gnuplot "/bin/gnuplot") ")") | |
981 | (dump-port in out)))))) | |
982 | %standard-phases)))) | |
8731e527 JD |
983 | (home-page "http://maxima.sourceforge.net") |
984 | (synopsis "Numeric and symbolic expression manipulation") | |
985 | (description "Maxima is a system for the manipulation of symbolic and | |
986 | numerical expressions. It yields high precision numeric results by using | |
987 | exact fractions, arbitrary precision integers, and variable precision floating | |
988 | point numbers") | |
989 | ;; Some files are lgpl2.1+. Some are gpl2+. Some explicitly state gpl1+. | |
990 | ;; Others simply say "GNU General Public License" without stating a | |
991 | ;; version (which implicitly means gpl1+). | |
992 | ;; At least one file (src/maxima.asd) says "version 2." | |
993 | ;; GPLv2 only is therefore the smallest subset. | |
f36afe4d | 994 | (license license:gpl2))) |
ec322be2 | 995 | |
9aafbc0c MW |
996 | (define-public wxmaxima |
997 | (package | |
998 | (name "wxmaxima") | |
999 | (version "15.04.0") | |
1000 | (source | |
1001 | (origin | |
1002 | (method url-fetch) | |
1003 | (uri (string-append "mirror://sourceforge/wxmaxima/wxMaxima/" | |
1004 | version "/" name "-" version ".tar.gz")) | |
1005 | (sha256 | |
1006 | (base32 | |
1007 | "1fm47ah4aw5qdjqhkz67w5fwhy8yfffa5z896crp0d3hk2bh4180")))) | |
1008 | (build-system gnu-build-system) | |
1009 | (inputs | |
1010 | `(("wxwidgets" ,wxwidgets) | |
1011 | ("maxima" ,maxima))) | |
1012 | (arguments | |
1013 | `(#:phases (modify-phases %standard-phases | |
1014 | (add-after | |
1015 | 'install 'wrap-program | |
1016 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
1017 | (wrap-program (string-append (assoc-ref outputs "out") | |
1018 | "/bin/wxmaxima") | |
1019 | `("PATH" ":" prefix | |
1020 | (,(string-append (assoc-ref inputs "maxima") | |
1021 | "/bin")))) | |
1022 | #t))))) | |
1023 | (home-page "https://andrejv.github.io/wxmaxima/") | |
1024 | (synopsis "Graphical user interface for the Maxima computer algebra system") | |
1025 | (description | |
1026 | "wxMaxima is a graphical user interface for the Maxima computer algebra | |
1027 | system. It eases the use of Maxima by making most of its commands available | |
1028 | through a menu system and by providing input dialogs for commands that require | |
1029 | more than one argument. It also implements its own display engine that | |
1030 | outputs mathematical symbols directly instead of depicting them with ASCII | |
1031 | characters. | |
1032 | ||
1033 | wxMaxima also features 2D and 3D inline plots, simple animations, mixing of | |
1034 | text and mathematical calculations to create documents, exporting of input and | |
1035 | output to TeX, and a browser for Maxima's manual including command index and | |
1036 | full text searching.") | |
1037 | (license license:gpl2+))) | |
1038 | ||
279663ef RW |
1039 | (define-public muparser |
1040 | (package | |
1041 | (name "muparser") | |
1042 | (version "2.2.5") | |
1043 | (source | |
1044 | (origin | |
1045 | (method svn-fetch) | |
1046 | (uri (svn-reference | |
1047 | (url "http://muparser.googlecode.com/svn/trunk/") | |
1048 | (revision 34))) | |
1049 | (sha256 | |
1050 | (base32 | |
1051 | "1d6bdbhx9zj3srwj3m7c9hvr18gnx1fx43h6d25my7q85gicpcwn")))) | |
1052 | (build-system gnu-build-system) | |
1053 | (arguments | |
1054 | `(#:configure-flags '("--enable-samples=no") | |
1055 | #:tests? #f)) ;no "check" target | |
1056 | (home-page "http://muparser.beltoforion.de/") | |
1057 | (synopsis "Fast parser library for mathematical expressions") | |
1058 | (description | |
1059 | "muParser is an extensible high performance math parser library. It is | |
1060 | based on transforming an expression into a bytecode and precalculating | |
1061 | constant parts of it.") | |
1062 | (license license:expat))) | |
1063 | ||
e73b49fb RW |
1064 | (define-public openblas |
1065 | (package | |
1066 | (name "openblas") | |
ecf28847 | 1067 | (version "0.2.14") |
e73b49fb RW |
1068 | (source |
1069 | (origin | |
1070 | (method url-fetch) | |
1071 | (uri (string-append "https://github.com/xianyi/OpenBLAS/tarball/v" | |
1072 | version)) | |
1073 | (file-name (string-append name "-" version ".tar.gz")) | |
1074 | (sha256 | |
1075 | (base32 | |
ecf28847 | 1076 | "0av3pd96j8rx5i65f652xv9wqfkaqn0w4ma1gvbyz73i6j2hi9db")))) |
e73b49fb RW |
1077 | (build-system gnu-build-system) |
1078 | (arguments | |
5b5ea159 RW |
1079 | `(#:tests? #f ;no "check" target |
1080 | ;; DYNAMIC_ARCH is not supported on MIPS. When it is disabled, | |
1081 | ;; OpenBLAS will tune itself to the build host, so we need to disable | |
1082 | ;; substitutions. | |
1083 | #:substitutable? ,(not (string-prefix? "mips" (%current-system))) | |
e73b49fb RW |
1084 | #:make-flags |
1085 | (list (string-append "PREFIX=" (assoc-ref %outputs "out")) | |
1086 | "SHELL=bash" | |
af5b817e RW |
1087 | "NO_LAPACK=1" |
1088 | ;; Build the library for all supported CPUs. This allows | |
1089 | ;; switching CPU targets at runtime with the environment variable | |
1090 | ;; OPENBLAS_CORETYPE=<type>, where "type" is a supported CPU type. | |
5b5ea159 RW |
1091 | ;; Unfortunately, this is not supported on MIPS. |
1092 | ,@(if (string-prefix? "mips" (%current-system)) | |
1093 | '() | |
1094 | '("DYNAMIC_ARCH=1"))) | |
e73b49fb RW |
1095 | ;; no configure script |
1096 | #:phases (alist-delete 'configure %standard-phases))) | |
1097 | (inputs | |
19afbea1 | 1098 | `(("fortran" ,gfortran))) |
e73b49fb RW |
1099 | (native-inputs |
1100 | `(("cunit" ,cunit) | |
1101 | ("perl" ,perl))) | |
1102 | (home-page "http://www.openblas.net/") | |
1103 | (synopsis "Optimized BLAS library based on GotoBLAS") | |
1104 | (description | |
1105 | "OpenBLAS is a BLAS library forked from the GotoBLAS2-1.13 BSD version.") | |
1106 | (license license:bsd-3))) | |
1107 | ||
e1605e36 RW |
1108 | (define-public openlibm |
1109 | (package | |
1110 | (name "openlibm") | |
1111 | (version "0.4.1") | |
1112 | (source | |
1113 | (origin | |
1114 | (method url-fetch) | |
1115 | (uri (string-append "https://github.com/JuliaLang/openlibm/archive/v" | |
1116 | version ".tar.gz")) | |
1117 | (file-name (string-append name "-" version ".tar.gz")) | |
1118 | (sha256 | |
1119 | (base32 | |
1120 | "0cwqqqlblj3kzp9aq1wnpfs1fl0qd1wp1xzm5shb09w06i4rh9nn")))) | |
1121 | (build-system gnu-build-system) | |
1122 | (arguments | |
1123 | `(#:make-flags | |
1124 | (list (string-append "prefix=" (assoc-ref %outputs "out"))) | |
1125 | #:phases | |
1126 | ;; no configure script | |
1127 | (alist-delete 'configure %standard-phases) | |
1128 | #:tests? #f)) ;the tests are part of the default target | |
1129 | (home-page "http://openlibm.org/") | |
1130 | (synopsis "Portable C mathematical library (libm)") | |
1131 | (description | |
1132 | "OpenLibm is an effort to have a high quality, portable, standalone C | |
1133 | mathematical library (libm). It can be used standalone in applications and | |
1134 | programming language implementations. The project was born out of a need to | |
1135 | have a good libm for the Julia programming langage that worked consistently | |
1136 | across compilers and operating systems, and in 32-bit and 64-bit | |
1137 | environments.") | |
1138 | ;; See LICENSE.md for details. | |
1139 | (license (list license:expat | |
1140 | license:isc | |
1141 | license:bsd-2 | |
1142 | license:public-domain | |
1143 | license:lgpl2.1+)))) | |
1144 | ||
e62be58f RW |
1145 | (define-public openspecfun |
1146 | (package | |
1147 | (name "openspecfun") | |
1148 | (version "0.4") | |
1149 | (source | |
1150 | (origin | |
1151 | (method url-fetch) | |
1152 | (uri (string-append "https://github.com/JuliaLang/openspecfun/archive/v" | |
1153 | version ".tar.gz")) | |
1154 | (file-name (string-append name "-" version ".tar.gz")) | |
1155 | (sha256 | |
1156 | (base32 | |
1157 | "0nsa3jjmlhcqkw5ba5ypbn3n0c8b6lc22zzlxnmxkxi9shhdx65z")))) | |
1158 | (build-system gnu-build-system) | |
1159 | (arguments | |
1160 | '(#:tests? #f ;no "check" target | |
1161 | #:make-flags | |
1162 | (list (string-append "prefix=" (assoc-ref %outputs "out"))) | |
1163 | ;; no configure script | |
1164 | #:phases (alist-delete 'configure %standard-phases))) | |
1165 | (inputs | |
19afbea1 | 1166 | `(("fortran" ,gfortran))) |
e62be58f RW |
1167 | (home-page "https://github.com/JuliaLang/openspecfun") |
1168 | (synopsis "Collection of special mathematical functions") | |
1169 | (description | |
1170 | "Openspecfun provides AMOS and Faddeeva. AMOS (from Netlib) is a | |
1171 | portable package for Bessel Functions of a Complex Argument and Nonnegative | |
1172 | Order; it contains subroutines for computing Bessel functions and Airy | |
1173 | functions. Faddeeva allows computing the various error functions of arbitrary | |
1174 | complex arguments (Faddeeva function, error function, complementary error | |
1175 | function, scaled complementary error function, imaginary error function, and | |
1176 | Dawson function); given these, one can also easily compute Voigt functions, | |
1177 | Fresnel integrals, and similar related functions as well.") | |
1178 | ;; Faddeeva is released under the Expat license; AMOS is included as | |
1179 | ;; public domain software. | |
1180 | (license (list license:expat license:public-domain)))) | |
1181 | ||
2742f87e RW |
1182 | (define-public suitesparse |
1183 | (package | |
1184 | (name "suitesparse") | |
1185 | (version "4.4.3") | |
1186 | (source | |
1187 | (origin | |
1188 | (method url-fetch) | |
1189 | (uri (string-append | |
1190 | "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-" | |
1191 | version ".tar.gz")) | |
1192 | (sha256 | |
1193 | (base32 | |
1194 | "100hdzr0mf4mzlwnqpmwpfw4pymgsf9n3g0ywb1yps2nk1zbkdy5")))) | |
1195 | (build-system gnu-build-system) | |
1196 | (arguments | |
1197 | '(#:parallel-build? #f ;cholmod build fails otherwise | |
1198 | #:tests? #f ;no "check" target | |
1199 | #:make-flags | |
1200 | (list "CC=gcc" | |
1201 | "BLAS=-lblas" | |
1202 | "TBB=-ltbb" | |
1203 | "CHOLMOD_CONFIG=-DNPARTITION" ;required when METIS is not used | |
1204 | (string-append "INSTALL_LIB=" | |
1205 | (assoc-ref %outputs "out") "/lib") | |
1206 | (string-append "INSTALL_INCLUDE=" | |
1207 | (assoc-ref %outputs "out") "/include")) | |
1208 | #:phases | |
1209 | (alist-cons-before | |
1210 | 'install 'prepare-out | |
1211 | ;; README.txt states that the target directories must exist prior to | |
1212 | ;; running "make install". | |
1213 | (lambda _ | |
1214 | (mkdir-p (string-append (assoc-ref %outputs "out") "/lib")) | |
1215 | (mkdir-p (string-append (assoc-ref %outputs "out") "/include"))) | |
1216 | ;; no configure script | |
1217 | (alist-delete 'configure %standard-phases)))) | |
1218 | (inputs | |
1219 | `(("tbb" ,tbb) | |
1220 | ("lapack" ,lapack))) | |
1221 | (home-page "http://faculty.cse.tamu.edu/davis/suitesparse.html") | |
1222 | (synopsis "Suite of sparse matrix software") | |
1223 | (description | |
1224 | "SuiteSparse is a suite of sparse matrix algorithms, including: UMFPACK, | |
1225 | multifrontal LU factorization; CHOLMOD, supernodal Cholesky; SPQR, | |
1226 | multifrontal QR; KLU and BTF, sparse LU factorization, well-suited for circuit | |
1227 | simulation; ordering methods (AMD, CAMD, COLAMD, and CCOLAMD); CSparse and | |
1228 | CXSparse, a concise sparse Cholesky factorization package; and many other | |
1229 | packages.") | |
1230 | ;; LGPLv2.1+: | |
1231 | ;; AMD, CAMD, BTF, COLAMD, CCOLAMD, CSparse, CXSparse, KLU, LDL | |
1232 | ;; GPLv2+: | |
1233 | ;; GPUQREngine, RBio, SuiteSparse_GPURuntime, SuiteSparseQR, UMFPACK | |
1234 | (license (list license:gpl2+ license:lgpl2.1+)))) | |
1235 | ||
ec322be2 FB |
1236 | (define-public atlas |
1237 | (package | |
1238 | (name "atlas") | |
1239 | (version "3.10.2") | |
1240 | (source (origin | |
1241 | (method url-fetch) | |
1242 | (uri (string-append "mirror://sourceforge/math-atlas/atlas" | |
1243 | version ".tar.bz2")) | |
1244 | (sha256 | |
1245 | (base32 | |
1246 | "0bqh4bdnjdyww4mcpg6kn0x7338mfqbdgysn97dzrwwb26di7ars")))) | |
1247 | (build-system gnu-build-system) | |
1248 | (home-page "http://math-atlas.sourceforge.net/") | |
19afbea1 | 1249 | (inputs `(("gfortran" ,gfortran) |
ec322be2 FB |
1250 | ("lapack-tar" ,(package-source lapack)))) |
1251 | (outputs '("out" "doc")) | |
01480b9e FB |
1252 | ;; For the moment we drop support for MIPS at it fails to compile. See |
1253 | ;; https://lists.gnu.org/archive/html/guix-devel/2014-11/msg00516.html | |
1254 | (supported-systems (delete "mips64el-linux" %supported-systems)) | |
ec322be2 FB |
1255 | (arguments |
1256 | `(#:parallel-build? #f | |
1257 | #:parallel-tests? #f | |
f15615b1 LC |
1258 | |
1259 | ;; ATLAS tunes itself for the machine it is built on, as explained at | |
1260 | ;; <http://lists.gnu.org/archive/html/guix-devel/2014-10/msg00305.html>. | |
1261 | ;; For this reason, we want users to build it locally instead of using | |
1262 | ;; substitutes. | |
1263 | #:substitutable? #f | |
1264 | ||
ec322be2 FB |
1265 | #:modules ((srfi srfi-26) |
1266 | (srfi srfi-1) | |
1267 | (guix build gnu-build-system) | |
1268 | (guix build utils)) | |
40029cbe | 1269 | #:configure-flags |
ec322be2 FB |
1270 | `(;; Generate position independent code suitable for dynamic libraries |
1271 | ;; and use WALL timer to get more accurate timing. | |
1272 | "-Fa" "alg" "-fPIC" "-D" "c" "-DWALL" | |
1273 | ;; Set word width. | |
1274 | "-b" | |
1275 | ,,(if (string-match "64" (%current-system)) | |
1276 | "64" | |
1277 | "32") | |
1278 | ;; Disable parallel build as it gives errors: atlas_pthread.h is | |
1279 | ;; needed to compile C files before it is generated. | |
1280 | "-Ss" "pmake" "make -j 1" | |
af89a667 FB |
1281 | ;; Probe is failing for MIPS. We therefore define the system |
1282 | ;; architecture explicitly by setting (-A) MACHINETYPE = 49 | |
1283 | ;; 'MIPSR1xK' and (-V) ISA = 1 'none'. | |
1284 | ,,@(if (string-prefix? "mips" (%current-system)) | |
1285 | (list "-A" "49" "-V" "1") | |
1286 | (list)) | |
ec322be2 FB |
1287 | ;; Generate shared libraries. |
1288 | "--shared" | |
1289 | ;; Build a full LAPACK library. | |
1290 | ,(string-append "--with-netlib-lapack-tarfile=" | |
1291 | (assoc-ref %build-inputs "lapack-tar"))) | |
1292 | #:phases | |
1293 | (alist-cons-after | |
1294 | 'install 'install-doc | |
1295 | (lambda* (#:key outputs inputs #:allow-other-keys) | |
40029cbe | 1296 | (let ((doc (string-append (assoc-ref outputs "doc") |
ec322be2 FB |
1297 | "/share/doc/atlas"))) |
1298 | (mkdir-p doc) | |
40029cbe | 1299 | (fold (lambda (file previous) |
ec322be2 FB |
1300 | (and previous (zero? (system* "cp" file doc)))) |
1301 | #t (find-files "../ATLAS/doc" ".*")))) | |
1302 | (alist-cons-after | |
1303 | 'check 'check-pt | |
1304 | (lambda _ (zero? (system* "make" "ptcheck"))) | |
1305 | ;; Fix files required to run configure. | |
1306 | (alist-cons-before | |
1307 | 'configure 'fix-/bin/sh | |
1308 | (lambda _ | |
1309 | ;; Use `sh', not `/bin/sh'. | |
1310 | (substitute* (find-files "." "Makefile|configure|SpewMakeInc\\.c") | |
1311 | (("/bin/sh") | |
1312 | "sh"))) | |
1313 | ;; Fix /bin/sh in generated make files. | |
1314 | (alist-cons-after | |
1315 | 'configure 'fix-/bin/sh-in-generated-files | |
1316 | (lambda _ | |
1317 | (substitute* (find-files "." "^[Mm]ake\\.inc.*") | |
1318 | (("/bin/sh") | |
1319 | "sh"))) | |
1320 | ;; ATLAS configure program does not accepts the default flags | |
1321 | ;; passed by the 'gnu-build-system'. | |
1322 | (alist-replace | |
1323 | 'configure | |
1324 | (lambda* (#:key native-inputs inputs outputs | |
1325 | (configure-flags '()) | |
1326 | #:allow-other-keys #:rest args) | |
1327 | (let* ((prefix (assoc-ref outputs "out")) | |
1328 | (bash (or (and=> (assoc-ref | |
1329 | (or native-inputs inputs) "bash") | |
1330 | (cut string-append <> "/bin/bash")) | |
1331 | "/bin/sh")) | |
1332 | (flags `(,(string-append "--prefix=" prefix) | |
1333 | ,@configure-flags)) | |
1334 | (abs-srcdir (getcwd)) | |
1335 | (srcdir (string-append "../" (basename abs-srcdir)))) | |
1336 | (format #t "source directory: ~s (relative from build: ~s)~%" | |
1337 | abs-srcdir srcdir) | |
1338 | (mkdir "../build") | |
1339 | (chdir "../build") | |
1340 | (format #t "build directory: ~s~%" (getcwd)) | |
1341 | (format #t "configure flags: ~s~%" flags) | |
1342 | (zero? (apply system* bash | |
1343 | (string-append srcdir "/configure") | |
1344 | flags)))) | |
1345 | %standard-phases))))))) | |
1346 | (synopsis "Automatically Tuned Linear Algebra Software") | |
1347 | (description | |
1348 | "ATLAS is an automatically tuned linear algebra software library | |
1349 | providing C and Fortran77 interfaces to a portably efficient BLAS | |
1350 | implementation, as well as a few routines from LAPACK. | |
1351 | ||
f15615b1 LC |
1352 | Optimization occurs at build time. For this reason, the library is built on |
1353 | the machine where it is installed, without resorting to pre-built substitutes. | |
ec322be2 | 1354 | |
f15615b1 LC |
1355 | Before building the library, CPU throttling should be disabled. This can be |
1356 | done in the BIOS, or, on GNU/Linux, with the following commands: | |
ec322be2 FB |
1357 | |
1358 | cpufreq-selector -g performance -c 0 | |
1359 | ... | |
1360 | cpufreq-selector -g performance -c N-1 | |
1361 | ||
1362 | where N is the number of cores of your CPU. Failure to do so will result in a | |
1363 | library with poor performance.") | |
1364 | (license license:bsd-3))) | |
c12efc72 AE |
1365 | |
1366 | (define-public glm | |
1367 | (package | |
1368 | (name "glm") | |
1369 | (version "0.9.6.3") | |
1370 | (source | |
1371 | (origin | |
1372 | (method url-fetch) | |
1373 | (uri (string-append "mirror://sourceforge/ogl-math/glm-" | |
1374 | version ".zip")) | |
1375 | (sha256 | |
1376 | (base32 | |
1377 | "1cnjmi033a16a95v6xfkr1bvfmkd26hzdjka8j1819hgn5b1nr8l")))) | |
1378 | (build-system cmake-build-system) | |
1379 | (native-inputs | |
1380 | `(("unzip" ,unzip))) | |
1381 | (home-page "http://glm.g-truc.net") | |
1382 | (synopsis "OpenGL Mathematics library") | |
1383 | (description "OpenGL Mathematics (GLM) is a header-only C++ mathematics | |
1384 | library for graphics software based on the OpenGL Shading Language (GLSL) | |
1385 | specifications.") | |
1386 | (license license:expat))) | |
7f18257b AE |
1387 | |
1388 | (define-public lpsolve | |
1389 | (package | |
1390 | (name "lpsolve") | |
1391 | (version "5.5.2.0") | |
1392 | (source | |
1393 | (origin | |
1394 | (method url-fetch) | |
1395 | (uri (string-append "mirror://sourceforge/lpsolve/lpsolve/" version | |
1396 | "/lp_solve_" version "_source.tar.gz")) | |
1397 | (sha256 | |
1398 | (base32 | |
1399 | "176c7f023mb6b8bfmv4rfqnrlw88lsg422ca74zjh19i2h5s69sq")) | |
1400 | (modules '((guix build utils))) | |
1401 | (snippet | |
1402 | '(substitute* (list "lp_solve/ccc" "lpsolve55/ccc") | |
1403 | (("^c=cc") "c=gcc") | |
1404 | ;; Pretend to be on a 64 bit platform to obtain a common directory | |
1405 | ;; name for the build results on all architectures; nothing else | |
1406 | ;; seems to depend on it. | |
1407 | (("^PLATFORM=.*$") "PLATFORM=ux64\n"))))) | |
1408 | (build-system gnu-build-system) | |
1409 | (arguments | |
1410 | `(#:tests? #f ; no check target | |
1411 | #:phases | |
1412 | (modify-phases %standard-phases | |
1413 | (delete 'configure) | |
1414 | (replace 'build | |
1415 | (lambda _ | |
1416 | (with-directory-excursion "lpsolve55" | |
1417 | (system* "bash" "ccc")) | |
1418 | (with-directory-excursion "lp_solve" | |
1419 | (system* "bash" "ccc")) | |
1420 | #t)) | |
1421 | (replace 'install | |
1422 | (lambda* (#:key outputs #:allow-other-keys) | |
1423 | (let* ((out (assoc-ref outputs "out")) | |
1424 | (bin (string-append out "/bin")) | |
1425 | (lib (string-append out "/lib")) | |
1426 | ;; This is where LibreOffice expects to find the header | |
1427 | ;; files, and where they are installed by Debian. | |
1428 | (include (string-append out "/include/lpsolve"))) | |
1429 | (mkdir-p lib) | |
1430 | (copy-file "lpsolve55/bin/ux64/liblpsolve55.a" | |
1431 | (string-append lib "/liblpsolve55.a")) | |
1432 | (copy-file "lpsolve55/bin/ux64/liblpsolve55.so" | |
1433 | (string-append lib "/liblpsolve55.so")) | |
1434 | (mkdir-p bin) | |
1435 | (copy-file "lp_solve/bin/ux64/lp_solve" | |
1436 | (string-append bin "/lp_solve")) | |
1437 | (mkdir-p include) | |
1438 | ;; Install a subset of the header files as on Debian | |
1439 | ;; (plus lp_bit.h, which matches the regular expression). | |
1440 | (for-each | |
1441 | (lambda (name) | |
1442 | (copy-file name (string-append include "/" name))) | |
1443 | (find-files "." "lp_[HMSa-z].*\\.h$")) | |
1444 | (with-directory-excursion "shared" | |
1445 | (for-each | |
1446 | (lambda (name) | |
1447 | (copy-file name (string-append include "/" name))) | |
1448 | (find-files "." "\\.h$"))) | |
1449 | #t)))))) | |
1450 | (home-page "http://lpsolve.sourceforge.net/") | |
1451 | (synopsis "Mixed integer linear programming (MILP) solver") | |
1452 | (description | |
1453 | "lp_solve is a mixed integer linear programming solver based on the | |
1454 | revised simplex and the branch-and-bound methods.") | |
1455 | (license license:lgpl2.1+))) |