gnu: MariaDB: Disable failing test on i686-linux.
[jackhill/guix/guix.git] / gnu / packages / databases.scm
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5f96f303 1;;; GNU Guix --- Functional package management for GNU
189be331 2;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2018 Ludovic Courtès <ludo@gnu.org>
a8714bf6
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3;;; Copyright © 2012, 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
4;;; Copyright © 2013, 2017 Cyril Roelandt <tipecaml@gmail.com>
218a2106 5;;; Copyright © 2014, 2016 David Thompson <davet@gnu.org>
b9ed5ef3 6;;; Copyright © 2014, 2015, 2016, 2018 Mark H Weaver <mhw@netris.org>
a8714bf6 7;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
da1f7a9e 8;;; Copyright © 2015, 2016 Sou Bunnbu <iyzsong@gmail.com>
b747a9db 9;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
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10;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
11;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
12;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
9930beb8 13;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
3c986a7d 14;;; Copyright © 2016, 2017 Nikita <nikita@n0.is>
6d09a7b5 15;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
0e1b262e 16;;; Copyright © 2016 David Craven <david@craven.ch>
fe71eee0 17;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
62ea44fc 18;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
a8714bf6 19;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org>
51d42caa 20;;; Copyright © 2016, 2017, 2018, 2019, 2020 Marius Bakke <mbakke@fastmail.com>
c336567d 21;;; Copyright © 2017, 2018 Julien Lepiller <julien@lepiller.eu>
7dc0f1d5 22;;; Copyright © 2017, 2020 Thomas Danckaert <post@thomasdanckaert.be>
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23;;; Copyright © 2017 Jelle Licht <jlicht@fsfe.org>
24;;; Copyright © 2017 Adriano Peluso <catonano@gmail.com>
d39a84e8 25;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
a8fa39cd 26;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
38abef12 27;;; Copyright © 2017, 2018 Alex Vong <alexvong1995@gmail.com>
19601e89 28;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
231123ee 29;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
7bcc3405 30;;; Copyright © 2017, 2018 Pierre Langlois <pierre.langlois@gmx.com>
e58d3a59 31;;; Copyright © 2015, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
16973071 32;;; Copyright © 2017 Kristofer Buffington <kristoferbuffington@gmail.com>
3926a099 33;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
dae7661a 34;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
da602679 35;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
9df78675 36;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us>
a3abc3fd 37;;; Copyright © 2019 Alex Griffin <a@ajgrf.com>
91477def 38;;; Copyright © 2019 Gábor Boskovits <boskovits@gmail.com>
450d5dc2 39;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com>
ae8a0184 40;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net>
2072bc08 41;;; Copyright © 2020 Pierre Neidhardt <mail@ambrevar.xyz>
659bc436 42;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz>
1655e7be 43;;; Copyright © 2020 Tanguy Le Carrour <tanguy@bioneland.org>
ba0b249d 44;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org>
8de54c63 45;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org>
d343e0fe 46;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de>
945ec6c3 47;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
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48;;;
49;;; This file is part of GNU Guix.
50;;;
51;;; GNU Guix is free software; you can redistribute it and/or modify it
52;;; under the terms of the GNU General Public License as published by
53;;; the Free Software Foundation; either version 3 of the License, or (at
54;;; your option) any later version.
55;;;
56;;; GNU Guix is distributed in the hope that it will be useful, but
57;;; WITHOUT ANY WARRANTY; without even the implied warranty of
58;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
59;;; GNU General Public License for more details.
60;;;
61;;; You should have received a copy of the GNU General Public License
62;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
63
64(define-module (gnu packages databases)
65 #:use-module (gnu packages)
58071723 66 #:use-module (gnu packages admin)
06a035db 67 #:use-module (gnu packages algebra)
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68 #:use-module (gnu packages autotools)
69 #:use-module (gnu packages avahi)
77e52190 70 #:use-module (gnu packages base)
b747a9db 71 #:use-module (gnu packages bash)
06a035db 72 #:use-module (gnu packages bison)
23bbd7dd 73 #:use-module (gnu packages boost)
06a035db 74 #:use-module (gnu packages check)
dae7661a 75 #:use-module (gnu packages cmake)
06a035db 76 #:use-module (gnu packages compression)
62ea44fc 77 #:use-module (gnu packages crypto)
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78 #:use-module (gnu packages curl)
79 #:use-module (gnu packages cyrus-sasl)
255d1bbe 80 #:use-module (gnu packages dbm)
06a035db 81 #:use-module (gnu packages emacs)
da602679 82 #:use-module (gnu packages flex)
2fa55c72 83 #:use-module (gnu packages gcc)
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84 #:use-module (gnu packages gettext)
85 #:use-module (gnu packages glib)
06a035db 86 #:use-module (gnu packages gnupg)
16973071 87 #:use-module (gnu packages guile)
da1f7a9e 88 #:use-module (gnu packages time)
33c88fcb 89 #:use-module (gnu packages golang)
3f8158d6 90 #:use-module (gnu packages icu4c)
06a035db 91 #:use-module (gnu packages jemalloc)
708155df 92 #:use-module (gnu packages language)
3f8158d6 93 #:use-module (gnu packages libedit)
686144e9 94 #:use-module (gnu packages libevent)
5f96f303 95 #:use-module (gnu packages linux)
a50628bb 96 #:use-module (gnu packages logging)
d39a84e8 97 #:use-module (gnu packages man)
a50628bb 98 #:use-module (gnu packages maths)
3f8158d6 99 #:use-module (gnu packages multiprecision)
5f96f303 100 #:use-module (gnu packages ncurses)
aace6f6d 101 #:use-module (gnu packages onc-rpc)
d3c6ad0a 102 #:use-module (gnu packages parallel)
77631745 103 #:use-module (gnu packages pcre)
06a035db 104 #:use-module (gnu packages perl)
5ccde207 105 #:use-module (gnu packages perl-check)
cabe8f18 106 #:use-module (gnu packages perl-web)
4c6aa73b 107 #:use-module (gnu packages pkg-config)
d3c6ad0a 108 #:use-module (gnu packages popt)
a50628bb 109 #:use-module (gnu packages protobuf)
06a035db 110 #:use-module (gnu packages python)
9763102b 111 #:use-module (gnu packages python-crypto)
450d5dc2 112 #:use-module (gnu packages python-web)
312ec128 113 #:use-module (gnu packages python-science)
44d10b1f 114 #:use-module (gnu packages python-xyz)
4c6aa73b 115 #:use-module (gnu packages rdf)
06a035db 116 #:use-module (gnu packages readline)
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117 #:use-module (gnu packages regex)
118 #:use-module (gnu packages rpc)
afcbb020 119 #:use-module (gnu packages ruby)
6bbbca90 120 #:use-module (gnu packages serialization)
9d0c291e 121 #:use-module (gnu packages sphinx)
cd0322a3 122 #:use-module (gnu packages sqlite)
06a035db 123 #:use-module (gnu packages tcl)
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124 #:use-module (gnu packages terminals)
125 #:use-module (gnu packages textutils)
06a035db 126 #:use-module (gnu packages tls)
6bbbca90 127 #:use-module (gnu packages valgrind)
dae7661a 128 #:use-module (gnu packages web)
77631745 129 #:use-module (gnu packages xml)
0e1b262e 130 #:use-module ((guix licenses) #:prefix license:)
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131 #:use-module (guix packages)
132 #:use-module (guix download)
da602679 133 #:use-module (guix bzr-download)
16973071 134 #:use-module (guix git-download)
945ec6c3 135 #:use-module (guix hg-download)
9df78675 136 #:use-module (guix build-system emacs)
5f96f303 137 #:use-module (guix build-system gnu)
58071723 138 #:use-module (guix build-system go)
274da61d 139 #:use-module (guix build-system perl)
4d98bfaf 140 #:use-module (guix build-system python)
afcbb020 141 #:use-module (guix build-system ruby)
77631745 142 #:use-module (guix build-system cmake)
6e385b76 143 #:use-module (guix build-system scons)
9077cf68 144 #:use-module (guix build-system trivial)
329d13b8 145 #:use-module (guix utils)
29cfbfca 146 #:use-module (srfi srfi-1)
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147 #:use-module (srfi srfi-26)
148 #:use-module (ice-9 match))
149
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150(define-public 4store
151 (package
152 (name "4store")
153 (version "1.1.6")
154 (source (origin
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155 (method git-fetch)
156 (uri (git-reference
b0e7b699 157 (url "https://github.com/4store/4store")
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158 (commit (string-append "v" version))))
159 (file-name (git-file-name name version))
4c6aa73b 160 (sha256
50e20b8f 161 (base32 "1kzdfmwpzy64cgqlkcz5v4klwx99w0jk7afckyf7yqbqb4rydmpk"))
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162 (patches (search-patches "4store-unset-preprocessor-directive.patch"
163 "4store-fix-buildsystem.patch"))))
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164 (build-system gnu-build-system)
165 (native-inputs
166 `(("perl" ,perl)
167 ("python" ,python-2)
168 ("autoconf" ,autoconf)
169 ("automake" ,automake)
b94a6ca0 170 ("gettext" ,gettext-minimal)
4c6aa73b 171 ("libtool" ,libtool)
74c8b174 172 ("pcre" ,pcre "bin") ;for 'pcre-config'
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173 ("pkg-config" ,pkg-config)))
174 (inputs
175 `(("glib" ,glib)
176 ("rasqal" ,rasqal)
177 ("libxml2" ,libxml2)
178 ("raptor2" ,raptor2)
179 ("readline" ,readline)
180 ("avahi" ,avahi)
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181 ("cyrus-sasl" ,cyrus-sasl)
182 ("openssl" ,openssl)
bb93042c 183 ("util-linux" ,util-linux "lib")))
4c6aa73b 184 ;; http://www.4store.org has been down for a while now.
bbf9092b 185 (home-page "https://github.com/4store/4store")
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186 (synopsis "Clustered RDF storage and query engine")
187 (description "4store is a RDF/SPARQL store written in C, supporting
188either single machines or networked clusters.")
ba8b9f8d 189 (license license:gpl3+)))
4c6aa73b 190
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191(define-public go-gopkg.in-mgo.v2
192 (package
193 (name "go-gopkg.in-mgo.v2")
194 (version "2016.08.01")
195 (source (origin
196 (method git-fetch)
197 (uri (git-reference
198 (url "https://github.com/go-mgo/mgo")
199 (commit (string-append "r" version))))
200 (file-name (git-file-name name version))
201 (sha256
202 (base32
203 "0rwbi1z63w43b0z9srm8m7iz1fdwx7bq7n2mz862d6liiaqa59jd"))))
204 (build-system go-build-system)
205 (arguments
206 `(#:import-path "gopkg.in/mgo.v2"
207 ;; TODO: The tests fail as MongoDB fails to start
208 ;; Error parsing command line: unrecognised option '--chunkSize'
209 #:tests? #f
210 #:phases
211 (modify-phases %standard-phases
212 (delete 'reset-gzip-timestamps)
213 (add-before 'check 'start-mongodb
214 (lambda* (#:key tests? #:allow-other-keys)
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215 (when tests?
216 (with-directory-excursion "src/gopkg.in/mgo.v2"
217 (invoke "make" "startdb")))
218 #t))
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219 (add-after 'check 'stop'mongodb
220 (lambda* (#:key tests? #:allow-other-keys)
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221 (when tests?
222 (with-directory-excursion "src/gopkg.in/mgo.v2"
223 (invoke "make" "stopdb")))
224 #t)))))
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225 (native-inputs
226 `(("go-gopkg.in-check.v1" ,go-gopkg.in-check.v1)
227 ("mongodb" ,mongodb)
228 ("daemontools" ,daemontools)))
229 (synopsis "@code{mgo} offers a rich MongoDB driver for Go.")
230 (description
231 "@code{mgo} (pronounced as mango) is a MongoDB driver for the Go language.
232It implements a rich selection of features under a simple API following
233standard Go idioms.")
de1d778e 234 (home-page "https://labix.org/mgo")
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235 (license license:bsd-2)))
236
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237(define-public ephemeralpg
238 (package
239 (name "ephemeralpg")
33df4763 240 (version "3.1")
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241 (source
242 (origin
243 (method url-fetch)
244 (uri (string-append
8e716256 245 "https://eradman.com/ephemeralpg/code/ephemeralpg-"
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246 version ".tar.gz"))
247 (sha256
33df4763 248 (base32 "1ap22ki8yz6agd0qybcjgs4b9izw1rwwcgpxn3jah2ccfyax34s6"))))
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249 (build-system gnu-build-system)
250 (arguments
ddb418b5 251 `(#:make-flags (list (string-append "CC=" ,(cc-for-target))
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252 (string-append "PREFIX=" %output))
253 #:phases
254 (modify-phases %standard-phases
6c54d06e 255 (delete 'configure) ; no configure script
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256 (add-after 'install 'wrap
257 (lambda* (#:key inputs outputs #:allow-other-keys)
258 (let ((out (assoc-ref outputs "out")))
259 (wrap-program (string-append out "/bin/pg_tmp")
260 `("PATH" ":" prefix
261 (,(string-append (assoc-ref inputs "util-linux")
262 "/bin")
263 ,(string-append (assoc-ref inputs "postgresql")
264 "/bin")
fa8343de 265 ;; For getsocket.
6fc03fcc 266 ,(string-append out "/bin")))))
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267 #t)))
268 #:test-target "test"))
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269 (inputs
270 `(("postgresql" ,postgresql)
271 ("util-linux" ,util-linux)))
272 (native-inputs
6c54d06e 273 ;; For tests.
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274 `(("ruby" ,ruby)
275 ("which" ,which)))
8e716256 276 (home-page "https://eradman.com/ephemeralpg/")
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277 (synopsis "Run temporary PostgreSQL databases")
278 (description
279 "@code{pg_tmp} creates temporary PostgreSQL databases, suitable for tasks
280like running software test suites. Temporary databases created with
281@code{pg_tmp} have a limited shared memory footprint and are automatically
282garbage-collected after a configurable number of seconds (the default is
28360).")
284 (license license:isc)))
285
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286(define-public es-dump-restore
287 (package
288 (name "es-dump-restore")
289 (version "2.1.0")
290 (source
291 (origin
292 (method url-fetch)
293 (uri (rubygems-uri "es_dump_restore" version))
294 (sha256
295 (base32
296 "020yk7f1hw48clmf5501z3xv9shsdchyymcv0y2cci2c1xvr1mim"))))
297 (build-system ruby-build-system)
298 (arguments
0076f5a9 299 '(#:tests? #f)) ;; No testsuite.
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300 (propagated-inputs
301 `(("ruby-httpclient" ,ruby-httpclient)
302 ("ruby-multi-json" ,ruby-multi-json)
303 ("ruby-progress_bar" ,ruby-progress_bar)
304 ("ruby-rubyzip" ,ruby-rubyzip)
305 ("ruby-thor" ,ruby-thor)))
306 (synopsis "Utility for dumping and restoring ElasticSearch indexes")
307 (description
308 "This package provides a utility for dumping the contents of an
309ElasticSearch index to a compressed file and restoring the dumpfile back to an
310ElasticSearch server")
311 (home-page "https://github.com/patientslikeme/es_dump_restore")
312 (license license:expat)))
313
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314(define-public firebird
315 (package
316 (name "firebird")
317 (version "3.0.7")
318 (source
319 (let ((revision "33374-0"))
320 (origin
321 (method url-fetch)
322 (uri (string-append "https://github.com/FirebirdSQL/"
323 "firebird/releases/download/R"
324 (string-replace-substring version "." "_") "/"
325 "Firebird-" version "." revision ".tar.bz2"))
326 (sha256
327 (base32 "0xpy1bncz36c6n28y7kllm1dkrdkn4vb4gw2n43f2351mznmrf5c"))
328 (modules '((guix build utils)))
329 (snippet
330 `(begin
331 (for-each
332 delete-file-recursively
333 (list "extern/btyacc/test" ; TODO: package and remove entirely
334 "extern/editline"
335 "extern/icu"
336 "extern/libtommath"
337 "extern/zlib"
338 "src/include/firebird/impl/boost"
339
340 ;; Missing licence.
341 "builds/install/arch-specific/solaris"
342 "extern/SfIO"
343 "src/msgs/templates.sql"
344
345 ;; Generated files missing sources.
346 "doc/Firebird-3-QuickStart.pdf"
347 (string-append "doc/Firebird-" ,version
348 "-ReleaseNotes.pdf")
349 "doc/README.SecureRemotePassword.html"))
350 #t)))))
351 (build-system gnu-build-system)
352 (outputs (list "debug" "out"))
353 (arguments
354 `(#:configure-flags
355 (let ((out (assoc-ref %outputs "out")))
356 (list (string-append "--with-fbsbin=" out "/sbin")
357 (string-append "--with-fbdoc=" out "/share/doc/"
358 ,name "-" ,version)
359 (string-append "--with-fbconf=" out "/lib/firebird")
360 (string-append "--with-fbintl=" out "/lib/firebird/intl")
361 (string-append "--with-fbmisc=" out "/lib/firebird/misc")
362 (string-append "--with-fbmsg=" out "/lib/firebird")
363 (string-append "--with-fbplugins=" out "/lib/firebird/plugins")
364 (string-append "--with-fbudf=" out "/lib/firebird/UDF")
365 "--with-fbglock=/run/firebird"
366 "--with-fblog=/var/log/firebird"
367 "--with-fbhelp=/var/lib/firebird/system"
368 "--with-fbsecure-db=/var/lib/firebird/secure"
369 "--without-fbsample"
370 "--without-fbsample-db"
371 "--with-system-editline"))
372 #:make-flags
373 (list (string-append "CC=" ,(cc-for-target))
374 ;; The plugins/ can't find libfbclient otherwise.
375 (string-append "LDFLAGS=-Wl,-rpath="
376 (assoc-ref %outputs "out") "/lib"))
377 #:tests? #f ; no test suite
378 #:modules ((guix build gnu-build-system)
379 (guix build utils)
380 (srfi srfi-26))
381 #:phases
382 (modify-phases %standard-phases
383 (add-after 'unpack 'use-system-boost
384 (lambda _
385 (substitute* "src/include/firebird/Message.h"
386 (("\"\\./impl/boost/preprocessor/seq/for_each_i\\.hpp\"")
387 "<boost/preprocessor/seq/for_each_i.hpp>")
388 (("FB_BOOST_") "BOOST_"))
389 #t))
390 (add-after 'unpack 'patch-installation
391 (lambda _
392 (substitute*
393 "builds/install/arch-specific/linux/makeInstallImage.sh.in"
394 (("/bin/sh") (which "bash"))
395 ;; Remove shell script helpers from $PATH.
396 (("(addLibs|cp) .*\\.sh .*@FB_SBINDIR@") ":")
397 ;; Put files where Guix users expect them.
398 (("(License\\.txt.*)@FB_CONFDIR" match)
399 (string-append match "@FB_DOCDIR@"))
400 (("@FB_CONFDIR@(.*License\\.txt.*)" match)
401 (string-append "@FB_DOCDIR@" match))
402 (("(cp .*/doc/.*)@FB_CONFDIR@(.*)" _ head tail)
403 (string-append head "@FB_DOCDIR@" tail "\n")))
404 (substitute*
405 (list "builds/install/posix-common/changeServerMode.sh.in"
406 "builds/install/posix-common/install.sh.in")
407 ;; Skip phases that (could) cause problems in Guix.
408 (("check(InstallUser|IfServerRunning|Libraries)|addFirebirdUser")
409 ":")
410 ;; Skip phases that are merely pointless on Guix.
411 (("buildUninstallFile|installInitdScript|startFirebird") ":")
412 ;; Omit randomly generated password with bonus timestamp.
413 (("setDBAPassword") ":"))
414
415 ;; These promote proprietary workflows not relevant on Guix.
416 (for-each delete-file-recursively
417 (find-files "doc" "README\\.(build\\.msvc|NT|Win)"))
418 #t))
419 (add-after 'configure 'delete-init-scripts
420 (lambda _
421 (delete-file-recursively "gen/install/misc")
422 #t))
423 (add-before 'build 'set-build-environment-variables
424 (lambda _
425 ;; ‘isql’ needs to run & find libfbclient.so during the build.
426 ;; This doubles as a rudimentary test in lieu of a test suite.
427 (setenv "LD_LIBRARY_PATH"
428 (string-append (assoc-ref %build-inputs "icu4c") "/lib"))
429 #t))
430 (add-before 'install 'keep-embedded-debug-symbols
431 (lambda _
432 ;; Let the gnu-build-system separate & deal with them later.
433 ;; XXX Upstream would use ‘--strip-unneeded’, shaving a whole
434 ;; megabyte off Guix's 7.7M libEngine12.so, for example.
435 (substitute* "gen/Makefile.install"
436 (("readelf") "false"))
437 #t))
438 (add-after 'install 'prune-undesirable-files
439 (lambda* (#:key outputs #:allow-other-keys)
440 (let ((out (assoc-ref outputs "out")))
441 (with-directory-excursion out
442 ;; Remove example binaries.
443 (for-each delete-file-recursively
444 (find-files "." "example"))
445 ;; Delete (now-)empty directories.
446 (for-each rmdir
447 (list "include/firebird/impl"
448 "lib/firebird/plugins/udr"))
449 #t)))))))
450 (inputs
451 `(("boost" ,boost)
452 ("editline" ,editline)
453 ("icu4c" ,icu4c-67)
454 ("libtommath" ,libtommath)
455 ("ncurses" ,ncurses)
456 ("zlib" ,zlib)))
457 (home-page "https://www.firebirdsql.org")
458 (synopsis "Relational database with many ANSI SQL standard features")
459 (description
460 "Firebird is an SQL @acronym{RDBMS, relational database management system}
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461with rich support for ANSI SQL (e.g., @code{INSERT...RETURNING}) including
462@acronym{UDFs, user-defined functions} and PSQL stored procedures, cursors, and
463triggers. Transactions provide full ACID-compliant referential integrity.
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464
465The database requires very little manual maintenance once set up, making it
466ideal for small business or embedded use.
467
468When installed as a traditional local or remote (network) database server,
469Firebird can grow to terabyte scale with proper tuning---although PostgreSQL
470may be a better choice for such very large environments.
471
472Firebird can also be embedded into stand-alone applications that don't want or
473need a full client & server. Used in this manner, it offers richer SQL support
474than SQLite as well as the option to seamlessly migrate to a client/server
475database later.")
476 (properties
477 `((lint-hidden-cve . ("CVE-2017-6369"))))
478 (license
479 ;; See doc/license/README.license.usage.txt for rationale & details.
480 (list license:bsd-3 ; src/common/sha2/
481 license:bsd-4 ; src/common/enc.cpp
482 license:gpl2+ ; builds/posix/make.defaults
483 (license:non-copyleft "file:///builds/install/misc/IPLicense.txt"
484 "InterBase Public License v1.0")
485 (license:non-copyleft "file:///builds/install/misc/IDPLicense.txt"
486 "Initial Developer's Public License v1.0")
487 license:lgpl2.1 ; exception for OSI-compatible licences
488 license:mpl1.1 ; examples/interfaces/0{6,8}*.cpp
489 license:public-domain)))) ; including files without explicit licence
490
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491(define-public leveldb
492 (package
493 (name "leveldb")
3a32be71 494 (version "1.22")
b9f771a7 495 (source (origin
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496 (method git-fetch)
497 (uri (git-reference
498 (url "https://github.com/google/leveldb")
5cc013f0 499 (commit version)))
ad7c77fd 500 (file-name (git-file-name name version))
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501 (sha256
502 (base32
3a32be71 503 "0qrnhiyq7r4wa1a4wi82zgns35smj94mcjsc7kfs1k6ia9ys79z7"))))
5cc013f0 504 (build-system cmake-build-system)
b9f771a7 505 (arguments
5cc013f0 506 `(#:configure-flags '("-DBUILD_SHARED_LIBS=ON" "-DLEVELDB_BUILD_TESTS=ON")))
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507 (inputs
508 `(("snappy" ,snappy)))
fd423e4d 509 (home-page "https://github.com/google/leveldb")
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510 (synopsis "Fast key-value storage library")
511 (description
512 "LevelDB is a fast key-value storage library that provides an ordered
513mapping from string keys to string values.")
ba8b9f8d 514 (license license:bsd-3)))
b9f771a7 515
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516(define-public memcached
517 (package
518 (name "memcached")
973218a3 519 (version "1.5.20")
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520 (source
521 (origin
522 (method url-fetch)
523 (uri (string-append
524 "https://memcached.org/files/memcached-" version ".tar.gz"))
525 (sha256
973218a3 526 (base32 "1r511qr95q0ywdaql3pdjiwzkfqxhhfzb13ilvl7mznfm4iv1myg"))))
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527 (build-system gnu-build-system)
528 (inputs
529 `(("libevent" ,libevent)
530 ("cyrus-sasl" ,cyrus-sasl)))
531 (home-page "https://memcached.org/")
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532 (synopsis "In-memory caching service")
533 (description "Memcached is an in-memory key-value store. It has a small
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534and generic API, and was originally intended for use with dynamic web
535applications.")
536 (license license:bsd-3)))
537
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538(define-public libmemcached
539 (package
540 (name "libmemcached")
541 (version "1.0.18")
542 ;; We build from the sources since we want to build the extra HTML
543 ;; documentation which is not included with the release.
544 (source (origin
545 (method bzr-fetch)
546 (uri (bzr-reference
547 (url "lp:libmemcached/1.0")
548 (revision (string-append "tag:" version))))
549 (file-name (string-append name "-" version "-checkout"))
550 (sha256
551 (base32
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552 "1842s4dxdh21gdr46q4dgxigidcs6dkqnbnqjwb9l8r0bqx5nb10"))
553 (patches
554 (search-patches "libmemcached-build-with-gcc7.patch"))))
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555 (build-system gnu-build-system)
556 (native-inputs
557 `(("memcached" ,memcached)
558 ("libtool" ,libtool)
559 ("autoconf" ,autoconf)
560 ("automake" ,automake)
561 ("bison" ,bison)
562 ("flex" ,flex)
563 ("perl" ,perl)
564 ("python-sphinx" ,python-sphinx))) ;to build the HTML doc.
565 (inputs
566 `(("libevent" ,libevent)
567 ("cyrus-sasl" ,cyrus-sasl)))
568 (outputs '("out" "doc"))
569 (arguments
570 '(#:phases
571 (modify-phases %standard-phases
572 (add-before 'bootstrap 'fix-configure.ac
573 ;; Move the AC_CONFIG_AUX_DIR macro use under AC_INIT, otherwise we
574 ;; get the error ``configure: error: cannot find install-sh,
575 ;; install.sh, or shtool in "." "./.." "./../.."`` (see:
576 ;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=19539 and
577 ;; https://bugs.launchpad.net/libmemcached/+bug/1803922).
578 (lambda _
579 (delete-file "bootstrap.sh") ;not useful in the context of Guix
580 (substitute* "configure.ac"
581 (("^AC_CONFIG_AUX_DIR\\(\\[build-aux\\]\\).*") "")
582 (("(^AC_INIT.*)" anchor)
583 (string-append anchor "AC_CONFIG_AUX_DIR([build-aux])\n")))
584 #t))
585 (add-before 'bootstrap 'disable-failing-tests
586 ;; See: https://bugs.launchpad.net/libmemcached/+bug/1803926
587 (lambda _
588 ;; Mark some heavily failing test suites as expected to fail.
589 (substitute* "Makefile.am"
590 (("(XFAIL_TESTS =[^\n]*)" xfail_tests)
591 (string-append xfail_tests " tests/testudp"
592 " tests/libmemcached-1.0/testapp"
593 " tests/libmemcached-1.0/testsocket")))
594 ;; Disable two tests of the unittest test suite.
595 (substitute* "libtest/unittest.cc"
596 ((".*echo_fubar_BINARY \\},.*") "")
597 ((".*application_doesnotexist_BINARY \\},.*") ""))
598 #t))
599 (add-after 'disable-dns-tests 'build-and-install-html-doc
600 (lambda* (#:key outputs #:allow-other-keys)
601 (let ((html (string-append (assoc-ref outputs "doc")
602 "/share/doc/libmemcached/html/")))
603 (invoke "make" "install-html")
604 ;; Cleanup useless files.
605 (for-each delete-file-recursively
606 (map (lambda (x) (string-append html x))
607 '("_sources" ".doctrees" ".buildinfo"))))
608 #t)))))
609 (home-page "https://libmemcached.org/")
610 (synopsis "C++ library for memcached")
611 (description "libMemcached is a library to use memcached in C/C++
612applications. It comes with a complete reference guide and documentation of
613the API, and provides features such as:
614@itemize
615@item Asynchronous and synchronous transport support
616@item Consistent hashing and distribution
617@item Tunable hashing algorithm to match keys
618@item Access to large object support
619@item Local replication
620@end itemize")
621 (license license:bsd-3)))
622
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623(define-public python-pylibmc
624 (package
625 (name "python-pylibmc")
79bc9176 626 (version "1.6.1")
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627 (source
628 (origin
629 (method url-fetch)
630 (uri (pypi-uri "pylibmc" version))
631 (sha256
79bc9176 632 (base32 "1sg7d9j0v6g3xg3finf4l1hb72c13vcyyi6rqrc9shbx903d93ca"))))
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633 (build-system python-build-system)
634 (arguments
635 '(#:phases
636 (modify-phases %standard-phases
637 (add-before 'check 'start-memcached-daemon
638 ;; The test suite requires a memcached server.
639 (lambda _
640 (invoke "memcached" "-d"))))))
641 (native-inputs
642 `(("memcached" ,memcached)
643 ("python-nose" ,python-nose)))
644 (inputs
645 `(("libmemcached" ,libmemcached)
646 ("zlib" ,zlib)
647 ("cyrus-sasl" ,cyrus-sasl)))
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648 (home-page "http://sendapatch.se/projects/pylibmc/")
649 (synopsis "Python client for memcached")
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650 (description
651 "@code{pylibmc} is a client in Python for memcached. It is a wrapper
652around TangentOrg’s libmemcached library, and can be used as a drop-in
653replacement for the code@{python-memcached} library.")
654 (license license:bsd-3)))
655
656(define-public python2-pylibmc
657 (package-with-python2 python-pylibmc))
658
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659(define-public mongodb
660 (package
661 (name "mongodb")
f1c49e75 662 (version "3.4.10")
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663 (source (origin
664 (method url-fetch)
665 (uri (string-append "https://github.com/mongodb/mongo/archive/r"
666 version ".tar.gz"))
667 (file-name (string-append name "-" version ".tar.gz"))
668 (sha256
f1c49e75 669 (base32 "0676lvkljj7a5hdhv78dbykqnqrj9lbn9799mi84b8vbnzsq961r"))
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670 (modules '((guix build utils)))
671 (snippet
672 '(begin
673 (for-each (lambda (dir)
674 (delete-file-recursively
675 (string-append "src/third_party/" dir)))
676 '("pcre-8.41" "scons-2.5.0" "snappy-1.1.3"
677 "valgrind-3.11.0" "wiredtiger"
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678 "yaml-cpp-0.5.3" "zlib-1.2.8"))
679 #t))
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680 (patches
681 (list
682 (search-patch "mongodb-support-unknown-linux-distributions.patch")))))
6e385b76 683 (build-system scons-build-system)
6bbbca90 684 (inputs
9d67480a 685 `(("openssl" ,openssl-1.0)
6bbbca90 686 ("pcre" ,pcre)
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687 ,@(match (%current-system)
688 ((or "x86_64-linux" "aarch64-linux" "mips64el-linux")
689 `(("wiredtiger" ,wiredtiger)))
690 (_ `()))
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691 ("yaml-cpp" ,yaml-cpp)
692 ("zlib" ,zlib)
51b0f09e 693 ("snappy" ,snappy)))
6bbbca90 694 (native-inputs
6e385b76 695 `(("valgrind" ,valgrind)
90205b62 696 ("perl" ,perl)
61506fe5 697 ("python" ,python-2)
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698 ("python2-pymongo" ,python2-pymongo)
699 ("python2-pyyaml" ,python2-pyyaml)
5a8ef3c1 700 ("tzdata" ,tzdata-for-tests)))
6bbbca90 701 (arguments
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702 `(#:scons ,scons-python2
703 #:phases
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704 (let ((common-options
705 `(;; "--use-system-tcmalloc" TODO: Missing gperftools
706 "--use-system-pcre"
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707 ;; wiredtiger is 64-bit only
708 ,,(if (any (cute string-prefix? <> (or (%current-target-system)
709 (%current-system)))
710 '("i686-linux" "armhf-linux"))
711 ``"--wiredtiger=off"
319b52c3 712 ``"--use-system-wiredtiger")
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713 ;; TODO
714 ;; build/opt/mongo/db/fts/unicode/string.o failed: Error 1
715 ;; --use-system-boost
716 "--use-system-snappy"
717 "--use-system-zlib"
718 "--use-system-valgrind"
719 ;; "--use-system-stemmer" TODO: Missing relevant package
720 "--use-system-yaml"
721 "--disable-warnings-as-errors"
722 ,(format #f "--jobs=~a" (parallel-job-count))
723 "--ssl")))
724 (modify-phases %standard-phases
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725 (add-after 'unpack 'patch
726 (lambda _
727 ;; Remove use of GNU extensions in parse_number_test.cpp, to
728 ;; allow compiling with GCC 7 or later
729 ;; https://jira.mongodb.org/browse/SERVER-28063
730 (substitute* "src/mongo/base/parse_number_test.cpp"
731 (("0xabcab\\.defdefP-10")
732 "687.16784283419838"))
733 #t))
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734 (add-after 'unpack 'scons-propagate-environment
735 (lambda _
736 ;; Modify the SConstruct file to arrange for
737 ;; environment variables to be propagated.
738 (substitute* "SConstruct"
739 (("^env = Environment\\(")
740 "env = Environment(ENV=os.environ, "))
741 #t))
742 (add-after 'unpack 'create-version-file
743 (lambda _
744 (call-with-output-file "version.json"
745 (lambda (port)
746 (display ,(simple-format #f "{
747 \"version\": \"~A\"
748}" version) port)))
749 #t))
750 (replace 'build
751 (lambda _
d9bcdfce 752 (apply invoke `("scons"
6bbbca90 753 ,@common-options
d9bcdfce 754 "mongod" "mongo" "mongos"))))
6bbbca90 755 (replace 'check
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756 (lambda* (#:key tests? inputs #:allow-other-keys)
757 (setenv "TZDIR"
758 (string-append (assoc-ref inputs "tzdata")
759 "/share/zoneinfo"))
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760 (when tests?
761 ;; Note that with the tests, especially the unittests, the
762 ;; build can take up to ~45GB of space, as many tests are
763 ;; individual executable files, with some being hundreds of
764 ;; megabytes in size.
765 (apply invoke `("scons" ,@common-options "dbtest" "unittests"))
766 (substitute* "build/unittests.txt"
767 ;; TODO: Don't run the async_stream_test, as it hangs
768 (("^build\\/opt\\/mongo\\/executor\\/async\\_stream\\_test\n$")
769 "")
770 ;; TODO: This test fails
771 ;; Expected 0UL != disks.size() (0 != 0) @src/mongo/util/procparser_test.cpp:476
772 (("^build\\/opt\\/mongo\\/util\\/procparser\\_test\n$")
773 ""))
774 (invoke "python" "buildscripts/resmoke.py"
775 "--suites=dbtest,unittests"
776 (format #f "--jobs=~a" (parallel-job-count))))
777 #t))
6bbbca90 778 (replace 'install
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779 (lambda* (#:key outputs #:allow-other-keys)
780 (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
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781 (install-file "mongod" bin)
782 (install-file "mongos" bin)
783 (install-file "mongo" bin))
784 #t))))))
785 (home-page "https://www.mongodb.org/")
786 (synopsis "High performance and high availability document database")
787 (description
788 "Mongo is a high-performance, high availability, schema-free
789document-oriented database. A key goal of MongoDB is to bridge the gap
790between key/value stores (which are fast and highly scalable) and traditional
791RDBMS systems (which are deep in functionality).")
792 (license (list license:agpl3
793 ;; Some parts are licensed under the Apache License
794 license:asl2.0))))
795
8de54c63 796(define-public mycli
797 (package
798 (name "mycli")
ce13a54a 799 (version "1.22.2")
8de54c63 800 (source
801 (origin
802 (method url-fetch)
803 (uri (pypi-uri "mycli" version))
804 (sha256
ce13a54a 805 (base32 "1lq2x95553vdmhw13cxcgsd2g2i32izhsb7hxd4m1iwf9b3msbpv"))))
8de54c63 806 (build-system python-build-system)
807 (arguments
808 `(#:tests? #f)) ; tests expect a running MySQL
809 (propagated-inputs
810 `(("python-cli-helpers" ,python-cli-helpers)
811 ("python-click" ,python-click)
812 ("python-configobj" ,python-configobj)
813 ("python-cryptography" ,python-cryptography)
814 ("python-prompt-toolkit" ,python-prompt-toolkit)
815 ("python-pygments" ,python-pygments)
816 ("python-pymysql" ,python-pymysql)
817 ("python-sqlparse" ,python-sqlparse)))
818 (home-page "http://mycli.net")
819 (synopsis
820 "Terminal Client for MySQL with AutoCompletion and Syntax Highlighting")
821 (description
822 "MyCLI is a command line interface for MySQL, MariaDB, and Percona with
823auto-completion and syntax highlighting.")
824 (license license:bsd-3)))
825
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826;; XXX When updating, check whether boost-for-mysql is still needed.
827;; It might suffice to patch ‘cmake/boost.cmake’ as done in the past.
5f96f303
LC
828(define-public mysql
829 (package
830 (name "mysql")
aace6f6d 831 (version "5.7.27")
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LC
832 (source (origin
833 (method url-fetch)
23bbd7dd 834 (uri (list (string-append
7fe3a57a 835 "https://dev.mysql.com/get/Downloads/MySQL-"
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EF
836 (version-major+minor version) "/"
837 name "-" version ".tar.gz")
838 (string-append
7fe3a57a 839 "https://downloads.mysql.com/archives/get/file/"
23bbd7dd 840 name "-" version ".tar.gz")))
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LC
841 (sha256
842 (base32
aace6f6d 843 "1fhv16zr46pxm1j8vb8x8mh3nwzglg01arz8gnazbmjqldr5idpq"))))
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844 (build-system cmake-build-system)
845 (arguments
69419655 846 `(#:configure-flags
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847 '("-DBUILD_CONFIG=mysql_release"
848 "-DWITH_SSL=system"
849 "-DWITH_ZLIB=system"
850 "-DDEFAULT_CHARSET=utf8"
851 "-DDEFAULT_COLLATION=utf8_general_ci"
852 "-DMYSQL_DATADIR=/var/lib/mysql"
853 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
854 "-DINSTALL_INFODIR=share/mysql/docs"
855 "-DINSTALL_MANDIR=share/man"
856 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
857 "-DINSTALL_SCRIPTDIR=bin"
858 "-DINSTALL_INCLUDEDIR=include/mysql"
859 "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
860 "-DINSTALL_SUPPORTFILESDIR=share/mysql"
861 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
862 "-DINSTALL_DOCDIR=share/mysql/docs"
863 "-DINSTALL_SHAREDIR=share/mysql"
864 ;; Get rid of test data.
865 "-DINSTALL_MYSQLTESTDIR="
3f289db6
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866 "-DINSTALL_SQLBENCHDIR=")
867 #:phases (modify-phases %standard-phases
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868 (add-after
869 'install 'remove-extra-binaries
870 (lambda* (#:key outputs #:allow-other-keys)
871 (let ((out (assoc-ref outputs "out")))
872 ;; Remove the 3 *_embedded files, which weigh in at
873 ;; 14 MiB each.
874 (for-each delete-file
875 (find-files (string-append out "/bin")
876 "_embedded$"))
7d099cbe 877 #t))))))
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878 (native-inputs
879 `(("bison" ,bison)
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880 ("perl" ,perl)
881 ("pkg-config" ,pkg-config)))
5f96f303 882 (inputs
7cbf06d8 883 `(("boost" ,boost-for-mysql)
23bbd7dd 884 ("libaio" ,libaio)
aace6f6d 885 ("libtirpc" ,libtirpc)
23bbd7dd 886 ("ncurses" ,ncurses)
5f96f303 887 ("openssl" ,openssl)
aace6f6d 888 ("rpcsvc-proto" ,rpcsvc-proto) ; rpcgen
23bbd7dd 889 ("zlib" ,zlib)))
7fe3a57a 890 (home-page "https://www.mysql.com/")
9e771e3b 891 (synopsis "Fast, easy to use, and popular database")
5f96f303
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892 (description
893 "MySQL is a fast, reliable, and easy to use relational database
894management system that supports the standardized Structured Query
895Language.")
ba8b9f8d 896 (license license:gpl2)))
5f96f303 897
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898(define-public mariadb
899 (package
900 (name "mariadb")
ce29031a 901 (version "10.5.8")
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902 (source (origin
903 (method url-fetch)
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904 (uri (string-append "https://downloads.mariadb.com/MariaDB"
905 "/mariadb-" version "/source/mariadb-"
906 version ".tar.gz"))
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907 (sha256
908 (base32
ce29031a 909 "1s3vfm73911cddjhgpcbkya6nz7ag2zygg56qqzwscn5ybv28j7b"))
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910 (modules '((guix build utils)))
911 (snippet
912 '(begin
913 ;; Delete bundled snappy and xz.
914 (delete-file-recursively "storage/tokudb/PerconaFT/third_party")
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915 (substitute* "storage/tokudb/PerconaFT/CMakeLists.txt"
916 ;; This file checks that the bundled sources are present and
917 ;; declares build procedures for them.
918 (("^include\\(TokuThirdParty\\)") ""))
919 (substitute* "storage/tokudb/PerconaFT/ft/CMakeLists.txt"
920 ;; Don't attempt to use the procedures we just removed.
921 ((" build_lzma build_snappy") ""))
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922
923 ;; Preserve CMakeLists.txt for these.
924 (for-each (lambda (file)
925 (unless (string-suffix? "CMakeLists.txt" file)
926 (delete-file file)))
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927 (append (find-files "extra/wolfssl")
928 (find-files "zlib")))
2001d2da 929 #t))))
77631745 930 (build-system cmake-build-system)
2b8491fb 931 (outputs '("out" "lib" "dev"))
77631745 932 (arguments
5193ae64 933 `(#:configure-flags
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934 (list
935 "-DBUILD_CONFIG=mysql_release"
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936 ;; Linking with libarchive fails, like this:
937
938 ;; ld: /gnu/store/...-libarchive-3.2.2/lib/libarchive.a(archive_entry.o):
939 ;; relocation R_X86_64_32 against `.bss' can not be used when
940 ;; making a shared object; recompile with -fPIC
941
942 ;; For now, disable the features that that use libarchive (xtrabackup).
943 "-DWITH_LIBARCHIVE=OFF"
944
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945 ;; Disable the TokuDB engine, because its test suite frequently fails,
946 ;; and loading it crashes the server: <https://bugs.gnu.org/35521>.
947 "-DTOKUDB_OK=OFF"
948
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949 ;; Ensure the system libraries are used.
950 "-DWITH_JEMALLOC=yes"
951 "-DWITH_PCRE=system"
952 "-DWITH_SSL=system"
953 "-DWITH_ZLIB=system"
954
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955 "-DDEFAULT_CHARSET=utf8"
956 "-DDEFAULT_COLLATION=utf8_general_ci"
957 "-DMYSQL_DATADIR=/var/lib/mysql"
958 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
ce29031a 959
704b7861 960 ;; Do not install the benchmark suite.
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961 "-DINSTALL_SQLBENCHDIR=false"
962
2b8491fb
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963 (string-append "-DCMAKE_INSTALL_PREFIX=" (assoc-ref %outputs "lib"))
964 (string-append "-DCMAKE_INSTALL_RPATH=" (assoc-ref %outputs "lib")
965 "/lib")
966 (string-append "-DINSTALL_INFODIR=" (assoc-ref %outputs "out")
967 "/share/mysql/docs")
968 (string-append "-DINSTALL_MANDIR=" (assoc-ref %outputs "out")
969 "/share/man")
970 (string-append "-DINSTALL_SCRIPTDIR=" (assoc-ref %outputs "out") "/bin")
971 (string-append "-DINSTALL_BINDIR=" (assoc-ref %outputs "out") "/bin")
972 "-DCMAKE_INSTALL_LIBDIR=lib"
77631745 973 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
2b8491fb
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974 (string-append "-DINSTALL_INCLUDEDIR=" (assoc-ref %outputs "dev")
975 "/include/mysql")
976 (string-append "-DINSTALL_DOCREADMEDIR=" (assoc-ref %outputs "out")
977 "/share/mysql/docs")
978 (string-append "-DINSTALL_DOCDIR=" (assoc-ref %outputs "out")
979 "/share/mysql/docs")
980 (string-append "-DINSTALL_SUPPORTFILESDIR=" (assoc-ref %outputs "out")
981 "/share/mysql/support-files")
77631745 982 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
4c27ea06 983 "-DINSTALL_SHAREDIR=share")
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984 #:phases
985 (modify-phases %standard-phases
525ebb85 986 (add-after 'unpack 'adjust-output-references
2001d2da 987 (lambda _
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988 ;; The build system invariably prepends $CMAKE_INSTALL_PREFIX
989 ;; to other variables such as $INSTALL_INCLUDEDIR, which does
990 ;; not work when the latter uses an absolute file name.
991 (substitute* "libmariadb/mariadb_config/mariadb_config.c.in"
704b7861
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992 (("%s/@INSTALL_INCLUDEDIR@")
993 (string-append "@INSTALL_INCLUDEDIR@"))
994 ;; As of 10.5.8, the mariadb_config program tries to be
995 ;; clever and computes the installation directory relative
996 ;; to /proc/self/exe when running on Linux. Make it fall
997 ;; back to the old behaviour.
998 (("defined\\(__linux__\\)")
999 "0"))
525ebb85
MB
1000 (substitute* "libmariadb/mariadb_config/libmariadb.pc.in"
1001 (("\\$\\{prefix\\}/@INSTALL_INCLUDEDIR@")
1002 "@INSTALL_INCLUDEDIR@"))
704b7861
MB
1003 (substitute* "support-files/mariadb.pc.in"
1004 (("^(include|bin|script|doc|man)dir=\\$\\{prefix\\}/" _ dir)
1005 (string-append dir "dir=")))
525ebb85
MB
1006 (substitute* "include/CMakeLists.txt"
1007 (("\\\\\\$\\{CMAKE_INSTALL_PREFIX\\}/\\$\\{INSTALL_INCLUDEDIR\\}")
1008 "${INSTALL_INCLUDEDIR}"))
704b7861
MB
1009 (substitute* "cmake/mariadb_connector_c.cmake"
1010 (("\\\\\\$\\{CMAKE_INSTALL_PREFIX\\}/\\$\\{INSTALL_BINDIR\\}")
1011 "${INSTALL_BINDIR}"))
2001d2da 1012 #t))
3869f39e
MB
1013 (add-after 'unpack 'adjust-tests
1014 (lambda _
1015 (let ((disabled-tests
1016 '(;; These fail because root@hostname == root@localhost in
1017 ;; the build environment, causing a user count mismatch.
1018 ;; See <https://jira.mariadb.org/browse/MDEV-7761>.
525ebb85 1019 "funcs_1.is_columns_mysql"
3869f39e
MB
1020 "main.join_cache"
1021 "main.explain_non_select"
e313327e 1022 "main.stat_tables"
1d957c79 1023 "main.stat_tables_innodb"
ce29031a 1024 "main.upgrade_MDEV-19650"
3418e43b 1025 "roles.acl_statistics"
69fb26d4 1026
ce29031a
MB
1027 ;; FIXME: This test checks various table encodings and
1028 ;; fails because Guix defaults to UTF8 instead of the
1029 ;; upstream default latin1_swedish_ci. It's not easily
1030 ;; substitutable because several encodings are tested.
1031 "main.sp2"
1032
166472e2
MB
1033 ;; XXX: This test occasionally fails on i686-linux:
1034 ;; <https://jira.mariadb.org/browse/MDEV-24458>
1035 ,@(if (string-prefix? "i686" (%current-system))
1036 '("main.myisampack")
1037 '())
1038
69fb26d4 1039 ;; This file contains a time bomb which makes it fail after
0ce64334 1040 ;; 2030-12-31. See <https://bugs.gnu.org/34351> for details.
525ebb85 1041 "main.mysqldump"))
3869f39e
MB
1042
1043 ;; This file contains a list of known-flaky tests for this
1044 ;; release. Append our own items.
1045 (unstable-tests (open-file "mysql-test/unstable-tests" "a")))
1046 (for-each (lambda (test)
1047 (format unstable-tests "~a : ~a\n"
1048 test "Disabled in Guix"))
1049 disabled-tests)
1050 (close-port unstable-tests)
1051
525ebb85 1052 ;; XXX: These fail because they expect a latin1 charset and
ab0cb26f 1053 ;; collation. See <https://jira.mariadb.org/browse/MDEV-21264>.
525ebb85
MB
1054 (substitute* '("mysql-test/main/gis_notembedded.result"
1055 "mysql-test/main/system_mysql_db.result")
ab0cb26f
MB
1056 (("latin1_swedish_ci") "utf8_general_ci")
1057 (("\tlatin1") "\tutf8"))
1058
e313327e
MB
1059 (substitute* "mysql-test/suite/binlog/t/binlog_mysqlbinlog_stop_never.test"
1060 (("/bin/bash")
1061 (which "bash")))
1062
3869f39e
MB
1063 (substitute* "mysql-test/mysql-test-run.pl"
1064 (("/bin/ls") (which "ls"))
1065 (("/bin/sh") (which "sh")))
1066 #t)))
5b4d2e40
MB
1067 (add-before 'configure 'disable-plugins
1068 (lambda _
1069 (let ((disable-plugin (lambda (name)
1070 (call-with-output-file
1071 (string-append "plugin/" name
1072 "/CMakeLists.txt")
1073 (lambda (port)
1074 (format port "\n")))))
03335824 1075 (disabled-plugins '(;; XXX: Causes a test failure.
3869f39e 1076 "disks")))
5b4d2e40
MB
1077 (for-each disable-plugin disabled-plugins)
1078 #t)))
3869f39e
MB
1079 (replace 'check
1080 (lambda* (#:key (tests? #t) #:allow-other-keys)
1081 (if tests?
1082 (with-directory-excursion "mysql-test"
1083 (invoke "./mtr" "--verbose"
3418e43b 1084 "--retry=3"
71179b35
MB
1085 "--testcase-timeout=40"
1086 "--suite-timeout=600"
3869f39e 1087 "--parallel" (number->string (parallel-job-count))
b2bb04bd
MB
1088 ;; Skip the replication tests: they are very I/O
1089 ;; intensive and frequently causes indeterministic
1090 ;; failures even on powerful hardware.
1091 "--skip-rpl"
3869f39e
MB
1092 "--skip-test-list=unstable-tests"))
1093 (format #t "test suite not run~%"))
1094 #t))
77631745
SB
1095 (add-after
1096 'install 'post-install
939c5b2c 1097 (lambda* (#:key inputs outputs #:allow-other-keys)
77631745 1098 (let* ((out (assoc-ref outputs "out"))
2b8491fb 1099 (dev (assoc-ref outputs "dev"))
939c5b2c
MB
1100 (lib (assoc-ref outputs "lib"))
1101 (openssl (assoc-ref inputs "openssl")))
525ebb85
MB
1102 (substitute* (list (string-append out "/bin/mariadb-install-db")
1103 (string-append out "/bin/mysql_install_db"))
77631745 1104 (("basedir=\"\"")
525ebb85
MB
1105 (string-append "basedir=\"" out "\""))
1106 (("\\$basedir/share/mysql")
1107 (string-append lib "/share/mysql")))
1108
2b8491fb 1109 (with-directory-excursion lib
704b7861
MB
1110 ;; Remove tests.
1111 (delete-file-recursively "mysql-test")
ce29031a 1112 ;; Remove static libraries.
963157f1 1113 (for-each delete-file (find-files "lib" "\\.a$")))
ce29031a 1114
2b8491fb
JL
1115 (with-directory-excursion out
1116 (delete-file "share/man/man1/mysql-test-run.pl.1")
1117 ;; Delete huge and unnecessary executables.
525ebb85 1118 (for-each delete-file (find-files "bin" "test$")))
2b8491fb
JL
1119 (mkdir-p (string-append dev "/share"))
1120 (mkdir-p (string-append dev "/bin"))
525ebb85
MB
1121 (rename-file (string-append lib "/bin/mariadbd")
1122 (string-append out "/bin/mariadbd"))
2b8491fb
JL
1123 (rename-file (string-append lib "/bin/mysqld")
1124 (string-append out "/bin/mysqld"))
525ebb85
MB
1125 (mkdir-p (string-append dev "/lib"))
1126 (rename-file (string-append lib "/lib/pkgconfig")
1127 (string-append dev "/lib/pkgconfig"))
1128 (rename-file (string-append lib "/bin/mariadb_config")
1129 (string-append dev "/bin/mariadb_config"))
2b8491fb
JL
1130 (rename-file (string-append out "/bin/mysql_config")
1131 (string-append dev "/bin/mysql_config"))
939c5b2c
MB
1132
1133 ;; Embed an absolute reference to OpenSSL in mysql_config
1134 ;; and the pkg-config file to avoid propagation.
525ebb85 1135 ;; XXX: how to do this for mariadb_config.c.in?
939c5b2c 1136 (substitute* (list (string-append dev "/bin/mysql_config")
525ebb85 1137 (string-append dev "/lib/pkgconfig/mariadb.pc"))
939c5b2c
MB
1138 (("-lssl -lcrypto" all)
1139 (string-append "-L" openssl "/lib " all)))
1140
841ee2a8 1141 #t))))))
77631745
SB
1142 (native-inputs
1143 `(("bison" ,bison)
03335824 1144 ("perl" ,perl)))
77631745
SB
1145 (inputs
1146 `(("jemalloc" ,jemalloc)
1147 ("libaio" ,libaio)
1148 ("libxml2" ,libxml2)
1149 ("ncurses" ,ncurses)
525ebb85 1150 ("openssl" ,openssl)
ab0cb26f 1151 ("pam" ,linux-pam)
525ebb85 1152 ("pcre2" ,pcre2)
2001d2da 1153 ("xz" ,xz)
77631745 1154 ("zlib" ,zlib)))
3869f39e
MB
1155 ;; The test suite is very resource intensive and can take more than three
1156 ;; hours on a x86_64 system. Give slow and busy machines some leeway.
1157 (properties '((timeout . 64800))) ;18 hours
77631745
SB
1158 (home-page "https://mariadb.org/")
1159 (synopsis "SQL database server")
1160 (description
1161 "MariaDB is a multi-user and multi-threaded SQL database server, designed
1162as a drop-in replacement of MySQL.")
ba8b9f8d 1163 (license license:gpl2)))
77631745 1164
2072bc08
PN
1165(define-public mariadb-connector-c
1166 (package
1167 (name "mariadb-connector-c")
3881d0dc
TGR
1168 (version "3.1.11")
1169 (source
1170 (origin
1171 (method url-fetch)
1172 (uri (string-append
1173 "https://downloads.mariadb.org/f/connector-c-" version
1174 "/mariadb-connector-c-" version "-src.tar.gz"
1175 "/from/https%3A//mirrors.ukfast.co.uk/sites/mariadb/?serve"))
1176 (sha256
1177 (base32 "03svzahdf7czjlm695c11r4bfd04qdqgx8r1vkpr1zlkjhwnqvry"))))
9077cf68 1178 (inputs
2072bc08
PN
1179 `(("openssl" ,openssl)))
1180 (build-system cmake-build-system)
9077cf68 1181 (arguments
87078871 1182 '(#:tests? #f)) ; no tests
2072bc08
PN
1183 (home-page "https://mariadb.com/kb/en/mariadb-connector-c/")
1184 (synopsis "Client library to connect to MySQL or MariaDB")
1185 (description "The MariaDB Connector/C is used to connect applications
1186developed in C/C++ to MariaDB and MySQL databases.")
1187 (license license:lgpl2.1+)))
9077cf68 1188
97dd1b15 1189;; Don't forget to update the other postgresql packages when upgrading this one.
a73302ec 1190(define-public postgresql-13
5f96f303
LC
1191 (package
1192 (name "postgresql")
a73302ec 1193 (version "13.1")
5f96f303
LC
1194 (source (origin
1195 (method url-fetch)
dbeaf8f2 1196 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
9020890b 1197 version "/postgresql-" version ".tar.bz2"))
5f96f303
LC
1198 (sha256
1199 (base32
a73302ec 1200 "07z6zwr58dckaa97yl9ml240z83d1lhgaxw9aq49i8lsp21mqd0j"))
c336567d 1201 (patches (search-patches "postgresql-disable-resolve_symlinks.patch"))))
5f96f303 1202 (build-system gnu-build-system)
dd213082 1203 (arguments
e693617f
MB
1204 `(#:configure-flags '("--with-uuid=e2fs" "--with-openssl"
1205 ;; PostgreSQL installs its own Makefile (should it?).
1206 ;; Prevent it from retaining needless references to
1207 ;; the build tools in order to save size.
1208 "MKDIR_P=mkdir -p" "INSTALL_BIN=install -c"
1209 "LD=ld" "TAR=tar")
b7aa3f5d 1210 #:phases
dd213082
JD
1211 (modify-phases %standard-phases
1212 (add-before 'configure 'patch-/bin/sh
1213 (lambda _
1214 ;; Refer to the actual shell.
1215 (substitute* '("src/bin/pg_ctl/pg_ctl.c"
1216 "src/bin/psql/command.c")
1217 (("/bin/sh") (which "sh")))
b7aa3f5d
DM
1218 #t))
1219 (add-after 'build 'build-contrib
1220 (lambda _
1fbad3ad 1221 (invoke "make" "-C" "contrib")))
b7aa3f5d
DM
1222 (add-after 'install 'install-contrib
1223 (lambda _
1fbad3ad 1224 (invoke "make" "-C" "contrib" "install"))))))
5f96f303
LC
1225 (inputs
1226 `(("readline" ,readline)
bb93042c 1227 ("libuuid" ,util-linux "lib")
8b7e6d00 1228 ("openssl" ,openssl)
5f96f303 1229 ("zlib" ,zlib)))
d887f420 1230 (home-page "https://www.postgresql.org/")
5f96f303
LC
1231 (synopsis "Powerful object-relational database system")
1232 (description
1233 "PostgreSQL is a powerful object-relational database system. It is fully
1234ACID compliant, has full support for foreign keys, joins, views, triggers, and
1235stored procedures (in multiple languages). It includes most SQL:2008 data
1236types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and
1237TIMESTAMP. It also supports storage of binary large objects, including
1238pictures, sounds, or video.")
ba8b9f8d 1239 (license (license:x11-style "file://COPYRIGHT"))))
5f96f303 1240
a73302ec 1241(define-public postgresql-11
ddeec8ca 1242 (package
a73302ec
MB
1243 (inherit postgresql-13)
1244 (name "postgresql")
1245 (version "11.6")
ddeec8ca 1246 (source (origin
a73302ec 1247 (inherit (package-source postgresql-13))
ddeec8ca
MB
1248 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
1249 version "/postgresql-" version ".tar.bz2"))
1250 (sha256
1251 (base32
a73302ec 1252 "0w1iq488kpzfgfnlw4k32lz5by695mpnkq461jrgsr99z5zlz4j9"))))))
ddeec8ca 1253
a73302ec 1254(define-public postgresql-10
91477def 1255 (package
a73302ec
MB
1256 (inherit postgresql-11)
1257 (version "10.13")
91477def 1258 (source (origin
a73302ec 1259 (inherit (package-source postgresql-11))
91477def
GB
1260 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
1261 version "/postgresql-" version ".tar.bz2"))
1262 (sha256
1263 (base32
a73302ec 1264 "1qal0yp7a90yzya7hl56gsmw5fvacplrdhpn7h9gnbyr1i2iyw2d"))))))
91477def 1265
7658d89b
EF
1266(define-public postgresql-9.6
1267 (package
a73302ec 1268 (inherit postgresql-10)
901c9930 1269 (version "9.6.16")
7658d89b 1270 (source (origin
a73302ec 1271 (inherit (package-source postgresql-10))
7658d89b
EF
1272 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
1273 version "/postgresql-" version ".tar.bz2"))
1274 (sha256
1275 (base32
901c9930 1276 "1rr2dgv4ams8r2lp13w85c77rkmzpb88fjlc28mvlw6zq2fblv2w"))))))
7658d89b 1277
a73302ec
MB
1278(define-public postgresql postgresql-13)
1279
9763102b
TGR
1280(define-public python-pymysql
1281 (package
1282 (name "python-pymysql")
4cb2f29e 1283 (version "0.9.3")
9763102b
TGR
1284 (source
1285 (origin
1286 (method url-fetch)
1287 (uri (pypi-uri "PyMySQL" version))
1288 (sha256
4cb2f29e 1289 (base32 "1ry8lxgdc1p3k7gbw20r405jqi5lvhi5wk83kxdbiv8xv3f5kh6q"))))
9763102b
TGR
1290 (build-system python-build-system)
1291 (native-inputs
1292 `(("python-unittest2" ,python-unittest2)))
1293 (inputs
1294 `(("python-cryptography" ,python-cryptography)))
1295 (arguments
1296 `(#:tests? #f)) ; tests expect a running MySQL
1297 (home-page "https://github.com/PyMySQL/PyMySQL/")
1298 (synopsis "Pure-Python MySQL driver")
1299 (description
1300 "PyMySQL is a pure-Python MySQL client library, based on PEP 249.
1301Most public APIs are compatible with @command{mysqlclient} and MySQLdb.")
1302 (license license:expat)))
1303
1304(define-public python2-pymysql
1305 (package-with-python2 python-pymysql))
1306
259a94e9
TD
1307(define-public qdbm
1308 (package
1309 (name "qdbm")
1310 (version "1.8.78")
1311 (source
1312 (origin
1313 (method url-fetch)
1314 (uri (string-append "http://fallabs.com/" name "/"
1315 name "-" version ".tar.gz"))
1316 (sha256
1317 (base32
1318 "0gmpvhn02pkq280ffmn4da1g4mdr1xxz7l80b7y4n7km1mrzwrml"))))
1319 (build-system gnu-build-system)
1320 (arguments
7dc0f1d5
TD
1321 `(#:configure-flags (list (string-append "LDFLAGS=-Wl,-rpath="
1322 (assoc-ref %outputs "out")
1323 "/lib"))
1324 #:make-flags (list "CFLAGS=-fPIC")))
d74647b0 1325 (home-page "https://fallabs.com/qdbm/")
259a94e9
TD
1326 (synopsis "Key-value database")
1327 (description "QDBM is a library of routines for managing a
1328database. The database is a simple data file containing key-value
1329pairs. Every key and value is serial bytes with variable length.
1330Binary data as well as character strings can be used as a key or a
1331value. There is no concept of data tables or data types. Records are
1332organized in a hash table or B+ tree.")
1333 (license license:lgpl2.1+)))
1334
5f96f303
LC
1335(define-public recutils
1336 (package
1337 (name "recutils")
c007e35d 1338 (version "1.8")
5f96f303
LC
1339 (source (origin
1340 (method url-fetch)
1341 (uri (string-append "mirror://gnu/recutils/recutils-"
1342 version ".tar.gz"))
1343 (sha256
1344 (base32
c007e35d 1345 "14xiln4immfsw8isnvwvq0h23f6z0wilpgsc4qzabnrzb5lsx3nz"))))
5f96f303
LC
1346 (build-system gnu-build-system)
1347
c007e35d 1348 (arguments '(#:configure-flags
b747a9db
LF
1349 (list (string-append "--with-bash-headers="
1350 (assoc-ref %build-inputs "bash:include")
c007e35d 1351 "/include/bash"))))
5f96f303 1352
535a69e9 1353 (native-inputs `(("bc" ,bc)
b747a9db 1354 ("bash:include" ,bash "include")
e1409c76 1355 ("check" ,check-0.14)
c007e35d 1356 ("pkg-config" ,pkg-config)))
5f96f303
LC
1357
1358 ;; TODO: Add more optional inputs.
5f96f303 1359 (inputs `(("curl" ,curl)
23526b67
JS
1360 ("libgcrypt" ,libgcrypt)
1361 ("libuuid" ,util-linux "lib")))
5f96f303
LC
1362 (synopsis "Manipulate plain text files as databases")
1363 (description
1364 "GNU Recutils is a set of tools and libraries for creating and
1365manipulating text-based, human-editable databases. Despite being text-based,
1366databases created with Recutils carry all of the expected features such as
c5779c93
LC
1367unique fields, primary keys, time stamps and more. Many different field
1368types are supported, as is encryption.")
ba8b9f8d 1369 (license license:gpl3+)
6fd52309 1370 (home-page "https://www.gnu.org/software/recutils/")))
5f96f303 1371
9df78675
JH
1372(define-public emacs-recutils
1373 (package
1374 (inherit recutils)
1375 (name "emacs-recutils")
1376 (build-system emacs-build-system)
1377 (arguments
1378 '(#:phases
1379 (modify-phases %standard-phases
1380 (add-after 'unpack 'change-directory
1381 (lambda _
1382 (chdir "etc")
1383 #t)))))
1384 (native-inputs '())
1385 (inputs '())
1386 (synopsis "Emacs mode for working with recutils database files")
1387 (description "This package provides an Emacs major mode @code{rec-mode}
1388for working with GNU Recutils text-based, human-editable databases. It
1389supports editing, navigation, and querying of recutils database files
1390including field and record folding.")))
1391
d3c6ad0a
MB
1392(define-public rocksdb
1393 (package
1394 (name "rocksdb")
6a0f9c87 1395 (version "6.11.4")
d3c6ad0a 1396 (source (origin
8dd36658
MB
1397 (method git-fetch)
1398 (uri (git-reference
1399 (url "https://github.com/facebook/rocksdb")
1400 (commit (string-append "v" version))))
1401 (file-name (git-file-name name version))
d3c6ad0a
MB
1402 (sha256
1403 (base32
6a0f9c87 1404 "0n19p9cd13jg0lnibrzwkxs4xlrhyj3knypkd2ic41arbds0bdnl"))
d3c6ad0a
MB
1405 (modules '((guix build utils)))
1406 (snippet
1407 '(begin
1408 ;; TODO: unbundle gtest.
1409 (delete-file "build_tools/gnu_parallel")
7fa9cca8
MB
1410 (substitute* "Makefile"
1411 (("build_tools/gnu_parallel") "parallel"))
d3c6ad0a
MB
1412 #t))))
1413 (build-system gnu-build-system)
1414 (arguments
7fa9cca8
MB
1415 `(#:make-flags (list "CC=gcc" "V=1"
1416 ;; Ceph requires that RTTI is enabled.
1417 "USE_RTTI=1"
115cd74d 1418 "date=1970-01-01" ; build reproducibly
d3c6ad0a 1419 (string-append "INSTALL_PATH="
7fa9cca8
MB
1420 (assoc-ref %outputs "out"))
1421
1422 ;; Running the full test suite takes hours and require
1423 ;; a lot of disk space. Instead we only run a subset
1424 ;; (see .travis.yml and Makefile).
1425 "ROCKSDBTESTS_END=db_tailing_iter_test")
1426 #:test-target "check_some"
d7b344c5
MB
1427 ;; Many tests fail on 32-bit platforms. There are multiple reports about
1428 ;; this upstream, but it's not going to be supported any time soon.
1429 #:tests? (let ((system ,(or (%current-target-system)
1430 (%current-system))))
1431 (or (string-prefix? "x86_64-linux" system)
1432 (string-prefix? "aarch64-linux" system)))
d3c6ad0a
MB
1433 #:phases
1434 (modify-phases %standard-phases
1435 (add-after 'unpack 'patch-Makefile
1436 (lambda _
1437 (substitute* "Makefile"
f91c677c
MB
1438 ;; Don't depend on the static library when installing.
1439 (("install: install-static")
1440 "install: install-shared")
d3c6ad0a
MB
1441 (("#!/bin/sh") (string-append "#!" (which "sh"))))
1442 #t))
1443 (delete 'configure)
d7b344c5
MB
1444 ;; The default target is only needed for tests and built on demand.
1445 (delete 'build)
1446 (add-before 'check 'disable-optimizations
1447 (lambda _
1448 ;; Prevent the build from passing '-march=native' to the compiler.
1449 (setenv "PORTABLE" "1")
1450 #t))
d3c6ad0a
MB
1451 (add-before 'check 'disable-failing-tests
1452 (lambda _
1453 (substitute* "Makefile"
1454 ;; These tests reliably fail due to "Too many open files".
1455 (("^[[:blank:]]+env_test[[:blank:]]+\\\\") "\\")
1456 (("^[[:blank:]]+persistent_cache_test[[:blank:]]+\\\\") "\\"))
1457 #t))
7fa9cca8 1458 (add-after 'check 'build
f91c677c 1459 ;; The default build target is a debug build for tests. The
7fa9cca8
MB
1460 ;; install target depends on the "shared_lib" release target
1461 ;; so we build it here for clarity.
1462 (lambda* (#:key (make-flags '()) parallel-build? #:allow-other-keys)
1463 (apply invoke "make" "shared_lib"
1464 `(,@(if parallel-build?
1465 `("-j" ,(number->string (parallel-job-count)))
1466 '())
1467 ,@make-flags)))))))
d3c6ad0a
MB
1468 (native-inputs
1469 `(("parallel" ,parallel)
1470 ("perl" ,perl)
1471 ("procps" ,procps)
77e52190
MB
1472 ("python" ,python-2)
1473 ("which" ,which)))
d3c6ad0a
MB
1474 (inputs
1475 `(("bzip2" ,bzip2)
1476 ("gflags" ,gflags)
1477 ("jemalloc" ,jemalloc)
1478 ("lz4" ,lz4)
1479 ("snappy" ,snappy)
1480 ("zlib" ,zlib)))
0087a250 1481 (home-page "https://rocksdb.org/")
d3c6ad0a
MB
1482 (synopsis "Persistent key-value store for fast storage")
1483 (description
1484 "RocksDB is a library that forms the core building block for a fast
1485key-value server, especially suited for storing data on flash drives. It
1486has a @dfn{Log-Structured-Merge-Database} (LSM) design with flexible tradeoffs
1487between @dfn{Write-Amplification-Factor} (WAF), @dfn{Read-Amplification-Factor}
1488(RAF) and @dfn{Space-Amplification-Factor} (SAF). It has multi-threaded
1489compactions, making it specially suitable for storing multiple terabytes of
1490data in a single database. RocksDB is partially based on @code{LevelDB}.")
7fa9cca8
MB
1491 ;; RocksDB is dual licensed under GPL2 and ASL 2.0. Some header
1492 ;; files carry the 3-clause BSD license.
1493 (license (list license:gpl2 license:asl2.0 license:bsd-3))))
d3c6ad0a 1494
b92d02d9
RJ
1495(define-public sparql-query
1496 (package
1497 (name "sparql-query")
1498 (version "1.1")
1499 (source (origin
ce64b9d1
EF
1500 (method git-fetch)
1501 (uri (git-reference
1502 (url "https://github.com/tialaramex/sparql-query")
1503 (commit version)))
b92d02d9 1504 (sha256
ce64b9d1
EF
1505 (base32 "0a84a89idpjhj9w2y3fmvzv7ldps1cva1kxvfmh897k02kaniwxk"))
1506 (file-name (git-file-name name version))))
b92d02d9
RJ
1507 (build-system gnu-build-system)
1508 (inputs
6914eea0 1509 `(("curl" ,curl)
b92d02d9
RJ
1510 ("glib" ,glib)
1511 ("libxml2" ,libxml2)
6914eea0
EF
1512 ("ncurses" ,ncurses)
1513 ("readline" ,readline)))
b92d02d9
RJ
1514 (native-inputs
1515 `(("pkg-config" ,pkg-config)))
1516 (arguments
1517 `(#:make-flags '("CC=gcc")
1518 #:phases
1519 (modify-phases %standard-phases
1520 (delete 'configure)
1521 ;; The Makefile uses git to obtain versioning information. This phase
1522 ;; substitutes the git invocation with the package version.
1523 (add-after 'unpack 'remove-git-dependency
1524 (lambda _
1525 (substitute* "Makefile"
1526 (("^gitrev :=.*$")
96272e28
MW
1527 (string-append "gitrev = \"v" ,version "\"")))
1528 #t))
b92d02d9
RJ
1529 ;; The install phase of the Makefile assumes $PREFIX/usr/local/bin.
1530 ;; This replacement does the same thing, except for using $PREFIX/bin
1531 ;; instead.
1532 (replace 'install
1533 (lambda* (#:key outputs #:allow-other-keys)
1534 (let* ((out (assoc-ref outputs "out"))
1535 (bin (string-append out "/bin")))
1536 (install-file "sparql-query" bin)
96272e28
MW
1537 (symlink (string-append bin "/sparql-query")
1538 (string-append bin "/sparql-update")))
1539 #t))
b92d02d9
RJ
1540 (replace 'check
1541 (lambda* (#:key make-flags #:allow-other-keys)
96272e28
MW
1542 (apply invoke "make" `(,@make-flags "scan-test"))
1543 (invoke "./scan-test"))))))
b92d02d9
RJ
1544 (home-page "https://github.com/tialaramex/sparql-query/")
1545 (synopsis "Command-line tool for accessing SPARQL endpoints over HTTP")
1546 (description "Sparql-query is a command-line tool for accessing SPARQL
36a4366d 1547endpoints over HTTP. It has been intentionally designed to @code{feel} similar to
b92d02d9
RJ
1548tools for interrogating SQL databases. For example, you can enter a query over
1549several lines, using a semi-colon at the end of a line to indicate the end of
1550your query. It also supports readline so that you can more easily recall and
1551edit previous queries, even across sessions. It can be used non-interactively,
1552for example from a shell script.")
1553 ;; Some files (like scan-sparql.c) contain a GPLv3+ license header, while
1554 ;; others (like sparql-query.c) contain a GPLv2+ license header.
ba8b9f8d 1555 (license (list license:gpl3+))))
b92d02d9 1556
cabe8f18
CB
1557(define-public sqitch
1558 (package
1559 (name "sqitch")
adcad547 1560 (version "1.1.0")
cabe8f18
CB
1561 (source
1562 (origin
1563 (method url-fetch)
1564 (uri (string-append
f64cd5d1
TGR
1565 "mirror://cpan/authors/id/D/DW/DWHEELER/App-Sqitch-v"
1566 version ".tar.gz"))
cabe8f18 1567 (sha256
adcad547 1568 (base32 "1ayiwg9kh3w0nbacbcln7h944z94vq5vnnd5diz86033bpbnq57f"))))
cabe8f18
CB
1569 (build-system perl-build-system)
1570 (arguments
1571 '(#:phases
1572 (modify-phases %standard-phases
1573 (add-before 'check 'set-check-environment
1574 (lambda _
1575 (setenv "TZ" "UTC")
1576 (setenv "HOME" "/tmp")
1577 #t))
1578 (add-after 'install 'wrap-program
1579 (lambda* (#:key outputs #:allow-other-keys)
1580 (let* ((out (assoc-ref outputs "out"))
1581 (path (getenv "PERL5LIB")))
1582 (wrap-program (string-append out "/bin/sqitch")
1583 `("PERL5LIB" ":" prefix
1584 (,(string-append out "/lib/perl5/site_perl"
1585 ":"
1586 path)))))
1587 #t)))))
1588 (native-inputs
1589 `(("perl-capture-tiny" ,perl-capture-tiny)
1590 ("perl-io-pager" ,perl-io-pager)
1591 ("perl-module-build" ,perl-module-build)
1592 ("perl-module-runtime" ,perl-module-runtime)
1593 ("perl-path-class" ,perl-path-class)
1594 ("perl-test-deep" ,perl-test-deep)
1595 ("perl-test-dir" ,perl-test-dir)
1596 ("perl-test-exception" ,perl-test-exception)
1597 ("perl-test-file" ,perl-test-file)
1598 ("perl-test-file-contents" ,perl-test-file-contents)
1599 ("perl-test-mockmodule" ,perl-test-mockmodule)
adcad547 1600 ("perl-test-mockobject" ,perl-test-mockobject)
cabe8f18
CB
1601 ("perl-test-nowarnings" ,perl-test-nowarnings)
1602 ("perl-test-warn" ,perl-test-warn)))
1603 (inputs
1604 `(("perl-class-xsaccessor" ,perl-class-xsaccessor)
1605 ("perl-clone" ,perl-clone)
1606 ("perl-config-gitlike" ,perl-config-gitlike)
1607 ("perl-datetime" ,perl-datetime)
1608 ("perl-datetime-timezone" ,perl-datetime-timezone)
6a1c3a90 1609 ("perl-dbd-mysql" ,perl-dbd-mysql)
cabe8f18 1610 ("perl-dbd-pg" ,perl-dbd-pg)
6a1c3a90 1611 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
cabe8f18
CB
1612 ("perl-dbi" ,perl-dbi)
1613 ("perl-devel-stacktrace" ,perl-devel-stacktrace)
1614 ("perl-encode-locale" ,perl-encode-locale)
cabe8f18
CB
1615 ("perl-hash-merge" ,perl-hash-merge)
1616 ("perl-ipc-run3" ,perl-ipc-run3)
1617 ("perl-ipc-system-simple" ,perl-ipc-system-simple)
1618 ("perl-libintl-perl" ,perl-libintl-perl)
1619 ("perl-list-moreutils" ,perl-list-moreutils)
1620 ("perl-moo" ,perl-moo)
1621 ("perl-mysql-config" ,perl-mysql-config)
1622 ("perl-namespace-autoclean" ,perl-namespace-autoclean)
1623 ("perl-path-class" ,perl-path-class)
1624 ("perl-perlio-utf8_strict" ,perl-perlio-utf8_strict)
1625 ("perl-string-formatter" ,perl-string-formatter)
1626 ("perl-string-shellquote" ,perl-string-shellquote)
1627 ("perl-sub-exporter" ,perl-sub-exporter)
1628 ("perl-template-tiny" ,perl-template-tiny)
1629 ("perl-template-toolkit" ,perl-template-toolkit)
1630 ("perl-throwable" ,perl-throwable)
1631 ("perl-try-tiny" ,perl-try-tiny)
1632 ("perl-type-tiny" ,perl-type-tiny)
1633 ("perl-type-tiny-xs" ,perl-type-tiny-xs)
1634 ("perl-uri" ,perl-uri)
1635 ("perl-uri-db" ,perl-uri-db)))
1636 (home-page "https://sqitch.org/")
1637 (synopsis "Database change management tool")
1638 (description
1639 "Sqitch is a standalone change management system for database schemas,
1640which uses SQL to describe changes.")
1641 (license license:x11)))
1642
311f06c9
TGR
1643(define-public sqlcrush
1644 ;; Unfortunately, there is no proper upstream release and may never be.
1645 (let ((commit "b5f6868f189566a26eecc78d0f0659813c1aa98a")
1646 (revision "1"))
1647 (package
1648 (name "sqlcrush")
1649 (version (git-version "0.1.5" revision commit))
1650 (source (origin
1651 (method git-fetch)
1652 (uri (git-reference
b0e7b699 1653 (url "https://github.com/coffeeandscripts/sqlcrush")
311f06c9
TGR
1654 (commit commit)))
1655 (file-name (git-file-name name version))
1656 (sha256
1657 (base32
1658 "0x3wy40r93p0jv3nbwj9a77wa4ff697d13r0wffmm7q9h3mzsww8"))))
1659 (build-system python-build-system)
1660 (inputs
1661 `(("python-cryptography" ,python-cryptography)
1662 ("python-psycopg2" ,python-psycopg2)
1663 ("python-pymysql" ,python-pymysql)
1664 ("python-sqlalchemy" ,python-sqlalchemy)))
1665 (home-page "https://github.com/coffeeandscripts/sqlcrush")
1666 (synopsis "Text console-based database viewer and editor")
1667 (description
1668 "SQLcrush lets you view and edit a database directly from the text
1669console through an ncurses interface. You can explore each table's structure,
1670browse and edit the contents, add and delete entries, all while tracking your
1671changes.")
1672 (license license:gpl3+)))) ; no headers, see README.md
1673
db60b1d9
LC
1674(define-public tdb
1675 (package
1676 (name "tdb")
10f004f0 1677 (version "1.4.3")
db60b1d9
LC
1678 (source (origin
1679 (method url-fetch)
ca473fc2 1680 (uri (string-append "https://www.samba.org/ftp/tdb/tdb-"
db60b1d9
LC
1681 version ".tar.gz"))
1682 (sha256
1683 (base32
10f004f0 1684 "06waz0k50c7v3chd08mzp2rv7w4k4q9isbxx3vhlfpx1vy9q61f8"))))
db60b1d9
LC
1685 (build-system gnu-build-system)
1686 (arguments
6ccb7814
EF
1687 '(#:phases
1688 (modify-phases %standard-phases
1689 (replace 'configure
1690 (lambda* (#:key outputs #:allow-other-keys)
1691 (let ((out (assoc-ref outputs "out")))
1692 ;; The 'configure' script is a wrapper for Waf and
1693 ;; doesn't recognize things like '--enable-fast-install'.
96272e28
MW
1694 (invoke "./configure"
1695 (string-append "--prefix=" out))))))))
db60b1d9
LC
1696 (native-inputs
1697 `(;; TODO: Build the documentation.
1698 ;; ("docbook-xsl" ,docbook-xsl)
1699 ;; ("libxml2" ,libxml2)
1700 ;; ("libxslt" ,libxslt)
97dcedbd
MB
1701 ("python" ,python) ;for the Waf build system
1702 ("which" ,which)))
1abd0904 1703 (home-page "https://tdb.samba.org/")
35b9e423 1704 (synopsis "Trivial database")
db60b1d9
LC
1705 (description
1706 "TDB is a Trivial Database. In concept, it is very much like GDBM,
1707and BSD's DB except that it allows multiple simultaneous writers and uses
1708locking internally to keep writers from trampling on each other. TDB is also
1709extremely small.")
ba8b9f8d 1710 (license license:lgpl3+)))
274da61d
LC
1711
1712(define-public perl-dbi
1713 (package
1714 (name "perl-dbi")
d0ed680b 1715 (version "1.643")
274da61d
LC
1716 (source (origin
1717 (method url-fetch)
1718 (uri (string-append
1719 "mirror://cpan/authors/id/T/TI/TIMB/DBI-"
1720 version ".tar.gz"))
1721 (sha256
1722 (base32
d0ed680b 1723 "1yinx39960y241vf2sknxj0dfz82a5m9gvklq5rw78k0nlyrjawa"))))
274da61d
LC
1724 (build-system perl-build-system)
1725 (synopsis "Database independent interface for Perl")
1726 (description "This package provides an database interface for Perl.")
9aba9b12 1727 (home-page "https://metacpan.org/release/DBI")
2f3108ad 1728 (license license:perl-license)))
274da61d 1729
feae3395
EB
1730(define-public perl-dbix-class
1731 (package
1732 (name "perl-dbix-class")
23ec2a0e 1733 (version "0.082842")
feae3395
EB
1734 (source
1735 (origin
1736 (method url-fetch)
1737 (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
1738 "DBIx-Class-" version ".tar.gz"))
1739 (sha256
23ec2a0e 1740 (base32 "1rh7idjjbibc1zmiaaarask434lh0lx7f2xyfwmy37k9fa0xcpmh"))))
feae3395
EB
1741 (build-system perl-build-system)
1742 (native-inputs
1743 `(("perl-dbd-sqlite" ,perl-dbd-sqlite)
1744 ("perl-file-temp" ,perl-file-temp)
2f837cf7 1745 ("perl-module-install" ,perl-module-install)
feae3395
EB
1746 ("perl-package-stash" ,perl-package-stash)
1747 ("perl-test-deep" ,perl-test-deep)
1748 ("perl-test-exception" ,perl-test-exception)
1749 ("perl-test-warn" ,perl-test-warn)))
1750 (propagated-inputs
1751 `(("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1752 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1753 ("perl-class-inspector" ,perl-class-inspector)
1754 ("perl-config-any" ,perl-config-any)
1755 ("perl-context-preserve" ,perl-context-preserve)
1756 ("perl-data-dumper-concise" ,perl-data-dumper-concise)
1757 ("perl-data-page" ,perl-data-page)
1758 ("perl-dbi" ,perl-dbi)
1759 ("perl-devel-globaldestruction" ,perl-devel-globaldestruction)
1760 ("perl-hash-merge" ,perl-hash-merge)
1761 ("perl-module-find" ,perl-module-find)
1762 ("perl-moo" ,perl-moo)
1763 ("perl-mro-compat" ,perl-mro-compat)
1764 ("perl-namespace-clean" ,perl-namespace-clean)
1765 ("perl-path-class" ,perl-path-class)
1766 ("perl-scalar-list-utils" ,perl-scalar-list-utils)
1767 ("perl-scope-guard" ,perl-scope-guard)
23ec2a0e 1768 ("perl-sql-abstract-classic" ,perl-sql-abstract-classic)
feae3395
EB
1769 ("perl-sub-name" ,perl-sub-name)
1770 ("perl-text-balanced" ,perl-text-balanced)
1771 ("perl-try-tiny" ,perl-try-tiny)))
9aba9b12 1772 (home-page "https://metacpan.org/release/DBIx-Class")
feae3395
EB
1773 (synopsis "Extensible and flexible object <-> relational mapper")
1774 (description "An SQL to OO mapper with an object API inspired by
1775Class::DBI (with a compatibility layer as a springboard for porting) and a
1776resultset API that allows abstract encapsulation of database operations. It
1777aims to make representing queries in your code as perl-ish as possible while
1778still providing access to as many of the capabilities of the database as
1779possible, including retrieving related records from multiple tables in a
1780single query, \"JOIN\", \"LEFT JOIN\", \"COUNT\", \"DISTINCT\", \"GROUP BY\",
1781\"ORDER BY\" and \"HAVING\" support.")
2f3108ad 1782 (license license:perl-license)))
e61fd0f0 1783
4e4039e5
EB
1784(define-public perl-dbix-class-cursor-cached
1785 (package
1786 (name "perl-dbix-class-cursor-cached")
180cb81b 1787 (version "1.001004")
4e4039e5
EB
1788 (source
1789 (origin
1790 (method url-fetch)
1791 (uri (string-append "mirror://cpan/authors/id/A/AR/ARCANEZ/"
1792 "DBIx-Class-Cursor-Cached-" version ".tar.gz"))
1793 (sha256
1794 (base32
180cb81b 1795 "09b2jahn2x12qm4f7qm1jzsxbz7qn1czp6a3fnl5l2i3l4r5421p"))))
4e4039e5
EB
1796 (build-system perl-build-system)
1797 (native-inputs
1798 `(("perl-cache-cache" ,perl-cache-cache)
2f837cf7
MB
1799 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1800 ("perl-module-install" ,perl-module-install)))
4e4039e5
EB
1801 (propagated-inputs
1802 `(("perl-carp-clan" ,perl-carp-clan)
1803 ("perl-dbix-class" ,perl-dbix-class)))
9aba9b12 1804 (home-page "https://metacpan.org/release/DBIx-Class-Cursor-Cached")
4e4039e5
EB
1805 (synopsis "Cursor with built-in caching support")
1806 (description "DBIx::Class::Cursor::Cached provides a cursor class with
1807built-in caching support.")
2f3108ad 1808 (license license:perl-license)))
4e4039e5 1809
e61fd0f0
EB
1810(define-public perl-dbix-class-introspectablem2m
1811 (package
1812 (name "perl-dbix-class-introspectablem2m")
7a462b80 1813 (version "0.001002")
e61fd0f0
EB
1814 (source
1815 (origin
1816 (method url-fetch)
68a9d6df 1817 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
e61fd0f0
EB
1818 "DBIx-Class-IntrospectableM2M-" version ".tar.gz"))
1819 (sha256
1820 (base32
7a462b80 1821 "1w47rh2241iy5x3a9bqsyd5kdp9sk43dksr99frzv4qn4jsazfn6"))))
e61fd0f0 1822 (build-system perl-build-system)
2f837cf7
MB
1823 (native-inputs
1824 `(("perl-module-install" ,perl-module-install)))
e61fd0f0
EB
1825 (propagated-inputs
1826 `(("perl-dbix-class" ,perl-dbix-class)))
9aba9b12 1827 (home-page "https://metacpan.org/release/DBIx-Class-IntrospectableM2M")
e61fd0f0
EB
1828 (synopsis "Introspect many-to-many relationships")
1829 (description "Because the many-to-many relationships are not real
1830relationships, they can not be introspected with DBIx::Class. Many-to-many
1831relationships are actually just a collection of convenience methods installed
1832to bridge two relationships. This DBIx::Class component can be used to store
1833all relevant information about these non-relationships so they can later be
1834introspected and examined.")
2f3108ad 1835 (license license:perl-license)))
708155df
EB
1836
1837(define-public perl-dbix-class-schema-loader
1838 (package
1839 (name "perl-dbix-class-schema-loader")
1672e7e7 1840 (version "0.07049")
708155df
EB
1841 (source
1842 (origin
1843 (method url-fetch)
1844 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1845 "DBIx-Class-Schema-Loader-" version ".tar.gz"))
1846 (sha256
1847 (base32
1672e7e7 1848 "0r57fv71ypxafb85cpxph1hdqii7ipjwvc19yb6fpkvq2ggcssg8"))))
708155df
EB
1849 (build-system perl-build-system)
1850 (native-inputs
1851 `(("perl-config-any" ,perl-config-any)
1852 ("perl-config-general" ,perl-config-general)
1853 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1854 ("perl-dbix-class-introspectablem2m" ,perl-dbix-class-introspectablem2m)
2f837cf7 1855 ("perl-module-install" ,perl-module-install)
708155df
EB
1856 ("perl-moose" ,perl-moose)
1857 ("perl-moosex-markasmethods" ,perl-moosex-markasmethods)
1858 ("perl-moosex-nonmoose" ,perl-moosex-nonmoose)
1859 ("perl-namespace-autoclean" ,perl-namespace-autoclean)
1860 ("perl-test-deep" ,perl-test-deep)
1861 ("perl-test-differences" ,perl-test-differences)
1862 ("perl-test-exception" ,perl-test-exception)
1863 ("perl-test-pod" ,perl-test-pod)
1864 ("perl-test-warn" ,perl-test-warn)))
1865 (propagated-inputs
1866 `(("perl-class-unload" ,perl-class-unload)
1867 ("perl-class-inspector" ,perl-class-inspector)
1868 ("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1869 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1870 ("perl-carp-clan" ,perl-carp-clan)
1871 ("perl-data-dump" ,perl-data-dump)
1872 ("perl-dbix-class" ,perl-dbix-class)
1873 ("perl-hash-merge" ,perl-hash-merge)
1874 ("perl-list-moreutils" ,perl-list-moreutils)
1875 ("perl-lingua-en-inflect-phrase" ,perl-lingua-en-inflect-phrase)
1876 ("perl-lingua-en-inflect-number" ,perl-lingua-en-inflect-number)
1877 ("perl-lingua-en-tagger" ,perl-lingua-en-tagger)
1878 ("perl-namespace-clean" ,perl-namespace-clean)
1879 ("perl-mro-compat" ,perl-mro-compat)
1880 ("perl-scope-guard" ,perl-scope-guard)
1881 ("perl-string-camelcase" ,perl-string-camelcase)
1882 ("perl-string-toidentifier-en" ,perl-string-toidentifier-en)
1883 ("perl-sub-name" ,perl-sub-name)
1884 ("perl-try-tiny" ,perl-try-tiny)))
1885 (arguments `(#:tests? #f)) ;TODO: t/20invocations.t fails
9aba9b12 1886 (home-page "https://metacpan.org/release/DBIx-Class-Schema-Loader")
708155df
EB
1887 (synopsis "Create a DBIx::Class::Schema based on a database")
1888 (description "DBIx::Class::Schema::Loader automates the definition of a
1889DBIx::Class::Schema by scanning database table definitions and setting up the
1890columns, primary keys, unique constraints and relationships.")
2f3108ad 1891 (license license:perl-license)))
274da61d 1892
186eb132
EB
1893(define-public perl-dbd-pg
1894 (package
1895 (name "perl-dbd-pg")
8c078dde 1896 (version "3.7.4")
186eb132
EB
1897 (source
1898 (origin
1899 (method url-fetch)
1900 (uri (string-append "mirror://cpan/authors/id/T/TU/TURNSTEP/"
1901 "DBD-Pg-" version ".tar.gz"))
1902 (sha256
1903 (base32
8c078dde 1904 "0gkqlvbmzbdm0g4k328nlkjdg3wrjm5i2n9jxj1i8sqxkm79rylz"))))
186eb132
EB
1905 (build-system perl-build-system)
1906 (native-inputs
1907 `(("perl-dbi" ,perl-dbi)))
1908 (propagated-inputs
1909 `(("perl-dbi" ,perl-dbi)
1910 ("postgresql" ,postgresql)))
9aba9b12 1911 (home-page "https://metacpan.org/release/DBD-Pg")
186eb132 1912 (synopsis "DBI PostgreSQL interface")
f33e71fc
LC
1913 (description "This package provides a PostgreSQL driver for the Perl5
1914@dfn{Database Interface} (DBI).")
2f3108ad 1915 (license license:perl-license)))
186eb132 1916
4b7857a4
RW
1917(define-public perl-dbd-mysql
1918 (package
1919 (name "perl-dbd-mysql")
49596a54 1920 (version "4.050")
4b7857a4
RW
1921 (source
1922 (origin
1923 (method url-fetch)
49596a54 1924 (uri (string-append "mirror://cpan/authors/id/D/DV/DVEEDEN/"
4b7857a4
RW
1925 "DBD-mysql-" version ".tar.gz"))
1926 (sha256
49596a54 1927 (base32 "0y4djb048i09dk19av7mzfb3khr72vw11p3ayw2p82jsy4gm8j2g"))))
4b7857a4 1928 (build-system perl-build-system)
702a87f2
TGR
1929 (arguments
1930 `(#:phases
1931 (modify-phases %standard-phases
1932 (add-before 'configure 'skip-library-detection
1933 ;; Avoid depencies on perl-devel-checklib, openssl, and zlib. They
1934 ;; are really only needed for the test suite; their absence does not
1935 ;; affect the build or the end result.
1936 (lambda _
1937 (substitute* "Makefile.PL"
1938 (("use Devel::CheckLib;" match)
1939 (string-append "# " match))
1940 (("assert_lib")
1941 "print"))
1942 #t)))
1943 ;; Tests require running MySQL server.
1944 #:tests? #f))
4b7857a4
RW
1945 (propagated-inputs
1946 `(("perl-dbi" ,perl-dbi)
2b8491fb
JL
1947 ("mysql" ,mariadb "lib")
1948 ("mysql-dev" ,mariadb "dev")))
9aba9b12 1949 (home-page "https://metacpan.org/release/DBD-mysql")
4b7857a4
RW
1950 (synopsis "DBI MySQL interface")
1951 (description "This package provides a MySQL driver for the Perl5
1952@dfn{Database Interface} (DBI).")
2f3108ad 1953 (license license:perl-license)))
4b7857a4 1954
274da61d
LC
1955(define-public perl-dbd-sqlite
1956 (package
1957 (name "perl-dbd-sqlite")
25fb1e30 1958 (version "1.66")
274da61d
LC
1959 (source (origin
1960 (method url-fetch)
1961 (uri (string-append
1962 "mirror://cpan/authors/id/I/IS/ISHIGAKI/DBD-SQLite-"
1963 version ".tar.gz"))
1964 (sha256
1965 (base32
25fb1e30 1966 "1zljln5nh61gj3k22a1fv2vhx5l83waizmarwkh77hk6kzzmvrw9"))))
274da61d
LC
1967 (build-system perl-build-system)
1968 (inputs `(("sqlite" ,sqlite)))
1969 (propagated-inputs `(("perl-dbi" ,perl-dbi)))
1970 (synopsis "SQlite interface for Perl")
1971 (description "DBD::SQLite is a Perl DBI driver for SQLite, that includes
1972the entire thing in the distribution. So in order to get a fast transaction
1973capable RDBMS working for your Perl project you simply have to install this
1974module, and nothing else.")
2f3108ad 1975 (license license:perl-license)
9aba9b12 1976 (home-page "https://metacpan.org/release/DBD-SQLite")))
14e84b2d 1977
55916fa2
CB
1978(define-public perl-mysql-config
1979 (package
1980 (name "perl-mysql-config")
1981 (version "1.04")
1982 (source
1983 (origin
1984 (method url-fetch)
1985 (uri (string-append
1986 "mirror://cpan/authors/id/D/DA/DARREN/MySQL-Config-"
1987 version
1988 ".tar.gz"))
1989 (sha256
1990 (base32
1991 "1svn7ccw2gc4cazvc58j84rxhnc9vs01zpird0l8460598j475qr"))))
1992 (build-system perl-build-system)
1993 (home-page "https://metacpan.org/release/MySQL-Config")
1994 (synopsis "Parse and utilize MySQL's /etc/my.cnf and ~/.my.cnf files")
1995 (description
1996 "@code{MySQL::Config} emulates the @code{load_defaults} function from
7230f6d5 1997libmysqlclient. It will fill an array with long options, ready to be parsed by
55916fa2
CB
1998@code{Getopt::Long}.")
1999 (license license:perl-license)))
2000
dd90952e
EB
2001(define-public perl-sql-abstract
2002 (package
2003 (name "perl-sql-abstract")
7a358c78 2004 (version "1.87")
dd90952e
EB
2005 (source
2006 (origin
2007 (method url-fetch)
439980b7 2008 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
dd90952e
EB
2009 "SQL-Abstract-" version ".tar.gz"))
2010 (sha256
7a358c78 2011 (base32 "0jhw91b23wc9bkfwcgvka4x5ddxk58m9bcp5ay7a3vx77nla09p9"))))
dd90952e
EB
2012 (build-system perl-build-system)
2013 (native-inputs
9dab5017
MB
2014 `(("perl-module-install" ,perl-module-install)
2015 ("perl-test-deep" ,perl-test-deep)
dd90952e
EB
2016 ("perl-test-exception" ,perl-test-exception)
2017 ("perl-test-warn" ,perl-test-warn)))
2018 (propagated-inputs
2019 `(("perl-hash-merge" ,perl-hash-merge)
2020 ("perl-moo" ,perl-moo)
2021 ("perl-mro-compat" ,perl-mro-compat)
2022 ("perl-text-balanced" ,perl-text-balanced)))
9aba9b12 2023 (home-page "https://metacpan.org/release/SQL-Abstract")
dd90952e
EB
2024 (synopsis "Generate SQL from Perl data structures")
2025 (description "This module was inspired by the excellent DBIx::Abstract.
2026While based on the concepts used by DBIx::Abstract, the concepts used have
2027been modified to make the SQL easier to generate from Perl data structures.
2028The underlying idea is for this module to do what you mean, based on the data
2029structures you provide it, so that you don't have to modify your code every
e881752c 2030time your data changes.")
2f3108ad 2031 (license license:perl-license)))
14e84b2d 2032
5d01aeba
TGR
2033(define-public perl-sql-abstract-classic
2034 (package
2035 (name "perl-sql-abstract-classic")
2036 (version "1.91")
2037 (source
2038 (origin
2039 (method url-fetch)
2040 (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
2041 "SQL-Abstract-Classic-" version ".tar.gz"))
2042 (sha256
2043 (base32 "0a7g13hs3kdxrjn43sfli09mgsi9d6w0dfw6hlk268av17yisgaf"))))
2044 (build-system perl-build-system)
2045 (native-inputs
2046 `(("perl-test-deep" ,perl-test-deep)
2047 ("perl-test-exception" ,perl-test-exception)
2048 ("perl-test-warn" ,perl-test-warn)))
2049 (propagated-inputs
2050 `(("perl-mro-compat" ,perl-mro-compat)
2051 ("perl-sql-abstract" ,perl-sql-abstract)))
2052 (home-page "https://metacpan.org/release/SQL-Abstract-Classic")
2053 (synopsis "Generate SQL from Perl data structures")
2054 (description
2055 "This module is nearly identical to @code{SQL::Abstract} 1.81, and exists
2056to preserve the ability of users to opt into the new way of doing things in
2057later versions according to their own schedules.
2058
2059It is an abstract SQL generation module based on the concepts used by
2060@code{DBIx::Abstract}, with several important differences, especially when it
2061comes to @code{WHERE} clauses. These concepts were modified to make the SQL
2062easier to generate from Perl data structures.
2063
2064The underlying idea is for this module to do what you mean, based on the data
2065structures you provide it. You shouldn't have to modify your code every time
2066your data changes, as this module figures it out.")
2067 (license license:perl-license)))
2068
b4dcb026
EB
2069(define-public perl-sql-splitstatement
2070 (package
2071 (name "perl-sql-splitstatement")
2072 (version "1.00020")
2073 (source
2074 (origin
2075 (method url-fetch)
2076 (uri (string-append "mirror://cpan/authors/id/E/EM/EMAZEP/"
2077 "SQL-SplitStatement-" version ".tar.gz"))
2078 (sha256
2079 (base32
2080 "0bqg45k4c9qkb2ypynlwhpvzsl4ssfagmsalys18s5c79ps30z7p"))))
2081 (build-system perl-build-system)
2082 (native-inputs
2083 `(("perl-test-exception" ,perl-test-exception)))
2084 (propagated-inputs
2085 `(("perl-class-accessor" ,perl-class-accessor)
2086 ("perl-list-moreutils" ,perl-list-moreutils)
2087 ("perl-regexp-common" ,perl-regexp-common)
2088 ("perl-sql-tokenizer" ,perl-sql-tokenizer)))
9aba9b12 2089 (home-page "https://metacpan.org/release/SQL-SplitStatement")
b4dcb026
EB
2090 (synopsis "Split SQL code into atomic statements")
2091 (description "This module tries to split any SQL code, even including
2092non-standard extensions, into the atomic statements it is composed of.")
2f3108ad 2093 (license license:perl-license)))
b4dcb026 2094
718c89c1
EB
2095(define-public perl-sql-tokenizer
2096 (package
2097 (name "perl-sql-tokenizer")
2098 (version "0.24")
2099 (source
2100 (origin
2101 (method url-fetch)
2102 (uri (string-append "mirror://cpan/authors/id/I/IZ/IZUT/"
2103 "SQL-Tokenizer-" version ".tar.gz"))
2104 (sha256
2105 (base32
2106 "1qa2dfbzdlr5qqdam9yn78z5w3al5r8577x06qan8wv58ay6ka7s"))))
2107 (build-system perl-build-system)
9aba9b12 2108 (home-page "https://metacpan.org/release/SQL-Tokenizer")
718c89c1
EB
2109 (synopsis "SQL tokenizer")
2110 (description "SQL::Tokenizer is a tokenizer for SQL queries. It does not
2111claim to be a parser or query verifier. It just creates sane tokens from a
2112valid SQL query.")
2f3108ad 2113 (license license:perl-license)))
718c89c1 2114
14e84b2d
JD
2115(define-public unixodbc
2116 (package
2117 (name "unixodbc")
4712fdd8 2118 (version "2.3.9")
14e84b2d
JD
2119 (source (origin
2120 (method url-fetch)
e881752c 2121 (uri
14e84b2d 2122 (string-append
3fef0a2f
EF
2123 "ftp://ftp.unixodbc.org/pub/unixODBC/unixODBC-"
2124 version ".tar.gz"))
14e84b2d 2125 (sha256
4712fdd8 2126 (base32 "01xj65d02i3yjy7p9z08y9jakcs5szmz4rask868n7387nn3x0sj"))))
14e84b2d
JD
2127 (build-system gnu-build-system)
2128 (synopsis "Data source abstraction library")
2129 (description "Unixodbc is a library providing an API with which to access
2130data sources. Data sources include SQL Servers and any software with an ODBC
2131Driver.")
ba8b9f8d 2132 (license license:lgpl2.1+)
14e84b2d
JD
2133 ;; COPYING contains copy of lgpl2.1 - but copyright notices just say "LGPL"
2134 (home-page "http://www.unixodbc.org")))
b4a9c924
EB
2135
2136(define-public unqlite
2137 (package
2138 (name "unqlite")
2139 (version "1.1.6")
2140 (source (origin
2141 (method url-fetch)
2142 ;; Contains bug fixes against the official release, and has an
2143 ;; autotooled build system.
2144 (uri (string-append "https://github.com/aidin36/tocc/releases/"
2145 "download/v1.0.0/"
2146 "unqlite-unofficial-" version ".tar.gz"))
2147 (sha256
2148 (base32
2149 "1sbpvhg15gadq0mpcy16q7k3rkg4b4dicpnn5xifpkpn02sqik3s"))))
2150 (build-system gnu-build-system)
2151 (arguments `(#:tests? #f)) ;No check target
f50ef349 2152 (home-page "https://www.unqlite.org")
b4a9c924
EB
2153 (synopsis "In-memory key/value and document store")
2154 (description
2155 "UnQLite is an in-process software library which implements a
2156self-contained, serverless, zero-configuration, transactional NoSQL
2157database engine. UnQLite is a document store database similar to
2158MongoDB, Redis, CouchDB, etc. as well as a standard Key/Value store
69b4ffcf 2159similar to BerkeleyDB, LevelDB, etc.")
ba8b9f8d 2160 (license license:bsd-2)))
463f6766
DT
2161
2162(define-public redis
2163 (package
2164 (name "redis")
84032506 2165 (version "5.0.7")
463f6766
DT
2166 (source (origin
2167 (method url-fetch)
2168 (uri (string-append "http://download.redis.io/releases/redis-"
2169 version".tar.gz"))
2170 (sha256
2171 (base32
84032506 2172 "0ax8sf3vw0yadr41kzc04917scrg5wir1d94zmbz00b8pzm79nv1"))))
463f6766
DT
2173 (build-system gnu-build-system)
2174 (arguments
2175 '(#:tests? #f ; tests related to master/slave and replication fail
2176 #:phases (modify-phases %standard-phases
2177 (delete 'configure))
2178 #:make-flags `("CC=gcc"
2179 "MALLOC=libc"
b25f060f 2180 "LDFLAGS=-ldl"
463f6766
DT
2181 ,(string-append "PREFIX="
2182 (assoc-ref %outputs "out")))))
2183 (synopsis "Key-value cache and store")
2184 (description "Redis is an advanced key-value cache and store. Redis
2185supports many data structures including strings, hashes, lists, sets, sorted
2186sets, bitmaps and hyperloglogs.")
5a3cbfce 2187 (home-page "https://redis.io/")
ba8b9f8d 2188 (license license:bsd-3)))
a65e2a02 2189
2190(define-public kyotocabinet
2191 (package
2192 (name "kyotocabinet")
9f304362 2193 (version "1.2.78")
a65e2a02 2194 (source (origin
2195 (method url-fetch)
7fc2ba2a
TGR
2196 (uri (string-append "https://fallabs.com/kyotocabinet/pkg/"
2197 "kyotocabinet-" version ".tar.gz"))
a65e2a02 2198 (sha256
2199 (base32
9f304362 2200 "1bxkf9kmcavq9rqridb8mvmrk3hj4447ffi24m2admsbm61n6k29"))))
a65e2a02 2201 (build-system gnu-build-system)
2202 (arguments
2203 `(#:configure-flags
2204 (list
9d59023e 2205 "--disable-opt" ;"-march=native". XXX this also turns off -O0.
a65e2a02 2206 (string-append "LDFLAGS=-Wl,-rpath="
2207 (assoc-ref %outputs "out") "/lib"))))
2208 (inputs `(("zlib" ,zlib)))
7fc2ba2a 2209 (home-page "https://fallabs.com/kyotocabinet/")
a65e2a02 2210 (synopsis
2211 "Kyoto Cabinet is a modern implementation of the DBM database")
2212 (description
2213 "Kyoto Cabinet is a standalone file-based database that supports Hash
2214and B+ Tree data storage models. It is a fast key-value lightweight
2215database and supports many programming languages. It is a NoSQL database.")
ba8b9f8d 2216 (license license:gpl3+)))
6242b314 2217
bdc11dc4 2218(define-public tokyocabinet
2219 (package
2220 (name "tokyocabinet")
2221 (version "1.4.48")
2222 (source
2223 (origin
2224 (method url-fetch)
2225 (uri (string-append "http://fallabs.com/tokyocabinet/"
2226 name "-" version ".tar.gz"))
2227 (sha256
2228 (base32
2229 "140zvr0n8kvsl0fbn2qn3f2kh3yynfwnizn4dgbj47m975yg80x0"))))
2230 (build-system gnu-build-system)
2231 (arguments
2232 `(#:configure-flags
2233 (list "--enable-pthread" "--enable-off64" "--enable-fastest"
2234 (string-append "LDFLAGS=-Wl,-rpath="
2235 (assoc-ref %outputs "out") "/lib"))))
2236 (inputs
2237 `(("zlib" ,zlib)))
2238 (home-page "http://fallabs.com/tokyocabinet/")
2239 (synopsis "Tokyo Cabinet is a modern implementation of the DBM database")
2240 (description
2241 "Tokyo Cabinet is a library of routines for managing a database.
2242The database is a simple data file containing records, each is a pair of a
2243key and a value. Every key and value is serial bytes with variable length.
2244Both binary data and character string can be used as a key and a value.
2245There is neither concept of data tables nor data types. Records are
2246organized in hash table, B+ tree, or fixed-length array.")
2247 (license license:lgpl2.1+)))
2248
6242b314
SB
2249(define-public wiredtiger
2250 (package
2251 (name "wiredtiger")
81e95821 2252 (version "2.9.1")
6242b314
SB
2253 (source (origin
2254 (method url-fetch)
2255 (uri (string-append
2256 "http://source.wiredtiger.com/releases/wiredtiger-"
2257 version ".tar.bz2"))
2258 (sha256
2259 (base32
81e95821 2260 "0krwnb2zfbhvjaskwl875qzd3y626s84zcciq2mxr5c5riw3yh6s"))))
6242b314
SB
2261 (build-system gnu-build-system)
2262 (arguments
a469c695 2263 '(#:configure-flags '("--enable-lz4" "--with-builtins=snappy,zlib")
6242b314
SB
2264 #:phases
2265 (modify-phases %standard-phases
2266 (add-before 'check 'disable-test/fops
2267 (lambda _
2268 ;; XXX: timed out after 3600 seconds of silence
2269 (substitute* "Makefile"
2270 (("test/fops") ""))
2271 #t)))))
2272 (inputs
2273 `(("lz4" ,lz4)
3faa422d
CB
2274 ("zlib" ,zlib)
2275 ("snappy" ,snappy)))
6242b314
SB
2276 (home-page "http://source.wiredtiger.com/")
2277 (synopsis "NoSQL data engine")
2278 (description
2279 "WiredTiger is an extensible platform for data management. It supports
2280row-oriented storage (where all columns of a row are stored together),
2281column-oriented storage (where columns are stored in groups, allowing for
2282more efficient access and storage of column subsets) and log-structured merge
2283trees (LSM), for sustained throughput under random insert workloads.")
ba8b9f8d 2284 (license license:gpl3) ; or GPL-2
6242b314 2285 ;; configure.ac: WiredTiger requires a 64-bit build.
092b7b3e 2286 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))))
90c2ee88 2287
4680fef7
AB
2288(define-public wiredtiger-3
2289 (package
2290 (inherit wiredtiger)
2291 (name "wiredtiger")
2292 (version "3.1.0")
2293 (source (origin
2294 (method url-fetch)
2295 (uri (string-append "http://source.wiredtiger.com/releases/wiredtiger-"
2296 version ".tar.bz2"))
2297 (sha256
2298 (base32
2299 "014awypv579ascg4jbx4pndj2wld337m79yyzrzyr7hxrff139jx"))))))
2300
16973071
KB
2301(define-public guile-wiredtiger
2302 (package
2303 (name "guile-wiredtiger")
b1e6b938 2304 (version "0.7.0")
16973071
KB
2305 (source (origin
2306 (method git-fetch)
2307 (uri (git-reference
2308 (url "https://framagit.org/a-guile-mind/guile-wiredtiger.git")
b1e6b938 2309 (commit "340ad4bc2ff4dcc6216a2f5c6f9172ca320ac66b")))
16973071
KB
2310 (file-name (string-append name "-" version "-checkout"))
2311 (sha256
2312 (base32
b1e6b938 2313 "15j36bvxxzil7qpwlmh1rffqpva3ynvrcpqhhqbj2c9208ayz595"))))
16973071
KB
2314 (build-system gnu-build-system)
2315 (arguments
3926a099 2316 '(#:parallel-tests? #f ;; tests can't be run in parallel, yet.
16973071
KB
2317 #:configure-flags
2318 (list (string-append "--with-libwiredtiger-prefix="
2319 (assoc-ref %build-inputs "wiredtiger")))
189be331 2320 #:make-flags '("GUILE_AUTO_COMPILE=0")))
16973071
KB
2321 (native-inputs
2322 `(("autoconf" ,autoconf)
2323 ("automake" ,automake)
2324 ("pkg-config" ,pkg-config)))
2325 (inputs
b1e6b938 2326 `(("wiredtiger" ,wiredtiger-3)
16973071
KB
2327 ("guile" ,guile-2.2)))
2328 (propagated-inputs
b1e6b938 2329 `(("guile-bytestructures" ,guile-bytestructures)))
3926a099 2330 (synopsis "WiredTiger bindings for GNU Guile")
16973071
KB
2331 (description
2332 "This package provides Guile bindings to the WiredTiger ``NoSQL''
b1e6b938 2333database.")
16973071
KB
2334 (home-page "https://framagit.org/a-guile-mind/guile-wiredtiger")
2335 (license license:gpl3+)))
2336
90c2ee88
DM
2337(define-public perl-db-file
2338 (package
2339 (name "perl-db-file")
24dd78a3 2340 (version "1.855")
90c2ee88
DM
2341 (source
2342 (origin
2343 (method url-fetch)
76899e92
TGR
2344 (uri (string-append "mirror://cpan/authors/id/P/PM/PMQS/DB_File-"
2345 version ".tar.gz"))
90c2ee88 2346 (sha256
24dd78a3 2347 (base32 "0q599h7g4jkzks5dxf1zifx9k7l9vif26r2dlgkzxkg6bfif5zyr"))))
90c2ee88
DM
2348 (build-system perl-build-system)
2349 (inputs `(("bdb" ,bdb)))
2350 (native-inputs `(("perl-test-pod" ,perl-test-pod)))
2351 (arguments
2352 `(#:phases (modify-phases %standard-phases
2353 (add-before
2354 'configure 'modify-config.in
2355 (lambda* (#:key inputs #:allow-other-keys)
2356 (substitute* "config.in"
2357 (("/usr/local/BerkeleyDB") (assoc-ref inputs "bdb")))
2358 #t)))))
9aba9b12 2359 (home-page "https://metacpan.org/release/DB_File")
ce054e84 2360 (synopsis "Perl5 access to Berkeley DB version 1.x")
90c2ee88
DM
2361 (description
2362 "The DB::File module provides Perl bindings to the Berkeley DB version 1.x.")
2f3108ad 2363 (license license:perl-license)))
0e1b262e
DC
2364
2365(define-public lmdb
2366 (package
2367 (name "lmdb")
09306c74 2368 (version "0.9.27")
f167b432
TGR
2369 (source
2370 (origin
2371 (method git-fetch)
2372 (uri (git-reference
8fc6059b 2373 (url "https://git.openldap.org/openldap/openldap.git")
f167b432
TGR
2374 (commit (string-append "LMDB_" version))))
2375 (file-name (git-file-name name version))
2376 (sha256
09306c74 2377 (base32 "09xqqm8yjsf1gv4gd4llal48sms76hfhxadx6rik1j2g5v3d3f1k"))))
0e1b262e
DC
2378 (build-system gnu-build-system)
2379 (arguments
2380 `(#:test-target "test"
2381 #:phases
2382 (modify-phases %standard-phases
2383 (replace 'configure
2384 (lambda* (#:key outputs #:allow-other-keys)
f167b432 2385 (chdir "libraries/liblmdb")
0e1b262e
DC
2386 (substitute* "Makefile"
2387 (("/usr/local") (assoc-ref outputs "out")))
2388 #t)))))
669fde53 2389 (home-page "https://symas.com/lmdb/")
fda852ff
TGR
2390 (synopsis "Lightning Memory-Mapped Database library")
2391 (description
2392 "The @dfn{Lightning Memory-Mapped Database} (LMDB) is a high-performance
2393transactional database. Unlike more complex relational databases, LMDB handles
2394only key-value pairs (stored as arbitrary byte arrays) and relies on the
2395underlying operating system for caching and locking, keeping the code small and
2396simple.
2397The use of ‘zero-copy’ memory-mapped files combines the persistence of classic
2398disk-based databases with high read performance that scales linearly over
2399multiple cores. The size of each database is limited only by the size of the
2400virtual address space — not physical RAM.")
0e1b262e 2401 (license license:openldap2.8)))
fe71eee0 2402
659bc436 2403(define-public lmdbxx
2404 (package
2405 (name "lmdbxx")
2406 (version "0.9.14.0")
2407 (source
2408 (origin
2409 (method git-fetch)
2410 (uri (git-reference
b0e7b699 2411 (url "https://github.com/drycpp/lmdbxx")
659bc436 2412 (commit version)))
2413 (file-name (git-file-name name version))
2414 (sha256
2415 (base32 "1jmb9wg2iqag6ps3z71bh72ymbcjrb6clwlkgrqf1sy80qwvlsn6"))))
2416 (arguments
2417 `(#:make-flags
2418 (list (string-append "PREFIX=" (assoc-ref %outputs "out")))
2419 #:phases
2420 (modify-phases %standard-phases
2421 (delete 'configure))))
2422 (build-system gnu-build-system)
2423 (inputs `(("lmdb" ,lmdb)))
2424 (home-page "http://lmdbxx.sourceforge.net")
2425 (synopsis "C++11 wrapper for the LMDB embedded B+ tree database library")
2426 (description "@code{lmdbxx} is a comprehensive @code{C++} wrapper for the
2427@code{LMDB} embedded database library, offering both an error-checked
2428procedural interface and an object-oriented resource interface with RAII
2429semantics.")
2430 (license license:unlicense)))
2431
fe71eee0
JN
2432(define-public libpqxx
2433 (package
2434 (name "libpqxx")
2435 (version "4.0.1")
2436 (source (origin
2437 (method url-fetch)
2438 (uri (string-append
2439 "http://pqxx.org/download/software/libpqxx/"
2440 name "-" version ".tar.gz"))
2441 (sha256
2442 (base32
2443 "0f6wxspp6rx12fkasanb0z2g2gc8dhcfwnxagx8wwqbpg6ifsz09"))))
2444 (build-system gnu-build-system)
2445 (native-inputs
2446 `(("python" ,python-2)))
2447 (inputs `(("postgresql" ,postgresql)))
2448 (arguments
5ac097e2
MB
2449 `(#:tests? #f ; # FAIL: 1
2450 #:phases
2451 (modify-phases %standard-phases
2452 (add-before 'configure 'fix-sed-command
2453 (lambda _
2454 ;; Newer sed versions error out if double brackets are not used.
2455 (substitute* "configure"
2456 (("\\[:space:\\]") "[[:space:]]"))
2457 #t)))))
fe71eee0
JN
2458 (synopsis "C++ connector for PostgreSQL")
2459 (description
2460 "Libpqxx is a C++ library to enable user programs to communicate with the
2461PostgreSQL database back-end. The database back-end can be local or it may be
2462on another machine, accessed via TCP/IP.")
2463 (home-page "http://pqxx.org/")
2464 (license license:bsd-3)))
4d98bfaf
EF
2465
2466(define-public python-peewee
2467 (package
2468 (name "python-peewee")
0fecc6ce 2469 (version "3.14.0")
831f1ff9
MR
2470 (source
2471 (origin
2472 (method url-fetch)
2473 (uri (pypi-uri "peewee" version))
2474 (sha256
0fecc6ce 2475 (base32 "1yl49gxrg0c2x3n3r60z3lixw9am8b61s0477l9vjabhhx1yziar"))))
4d98bfaf
EF
2476 (build-system python-build-system)
2477 (arguments
0fecc6ce 2478 `(#:tests? #f)) ; fails to import test data
831f1ff9
MR
2479 (inputs
2480 `(("sqlite" ,sqlite)))
4d98bfaf
EF
2481 (native-inputs
2482 `(("python-cython" ,python-cython)))
2483 (home-page "https://github.com/coleifer/peewee/")
2484 (synopsis "Small object-relational mapping utility")
2485 (description
2486 "Peewee is a simple and small ORM (object-relation mapping) tool. Peewee
2487handles converting between pythonic values and those used by databases, so you
2488can use Python types in your code without having to worry. It has built-in
2489support for sqlite, mysql and postgresql. If you already have a database, you
2490can autogenerate peewee models using @code{pwiz}, a model generator.")
2491 (license license:expat)))
2492
2493(define-public python2-peewee
2494 (package-with-python2 python-peewee))
62ea44fc 2495
1110a421
LDB
2496(define-public python-tortoise-orm
2497 (package
2498 (name "python-tortoise-orm")
b9d96ed7 2499 (version "0.16.7")
1110a421
LDB
2500 (source
2501 (origin
2502 (method url-fetch)
2503 (uri (pypi-uri "tortoise-orm" version))
2504 (sha256
2505 (base32
b9d96ed7 2506 "0wr7p4v0b16ypm9fcpwpl99kf491m6w3jkd13xcsgq13fy73fbqc"))))
1110a421
LDB
2507 (build-system python-build-system)
2508 ;; Disable tests for now. They pull in a lot of dependencies.
2509 (arguments `(#:tests? #f))
2510 (native-inputs
b9d96ed7 2511 `(("python-asynctest" ,python-asynctest)
1110a421
LDB
2512 ("python-nose2" ,python-nose2)))
2513 (propagated-inputs
2514 `(("python-aiosqlite" ,python-aiosqlite)
2515 ("python-pypika" ,python-pypika)
b9d96ed7 2516 ("python-ciso8601" ,python-ciso8601)
1110a421
LDB
2517 ("python-typing-extensions"
2518 ,python-typing-extensions)))
2519 (home-page
2520 "https://github.com/tortoise/tortoise-orm")
2521 (synopsis
2522 "Easy async ORM for python, built with relations in mind")
2523 (description
2524 "Tortoise ORM is an easy-to-use asyncio ORM (Object Relational Mapper)
2525inspired by Django. Tortoise ORM was build with relations in mind and
2526admiration for the excellent and popular Django ORM. It’s engraved in its
2527design that you are working not with just tables, you work with relational
2528data.")
2529 (license license:asl2.0)))
2530
62ea44fc
AP
2531(define-public sqlcipher
2532 (package
2533 (name "sqlcipher")
682c2918 2534 (version "3.4.2")
62ea44fc
AP
2535 (source
2536 (origin
2537 (method url-fetch)
2538 (uri (string-append "https://github.com/sqlcipher/" name
2539 "/archive/v" version ".tar.gz"))
2540 (sha256
682c2918 2541 (base32 "1nxarwbci8jx99f1d0y1ivxcv25s78l1p7q6qy28lkpkcx8pm2b9"))
62ea44fc
AP
2542 (file-name (string-append name "-" version ".tar.gz"))))
2543 (build-system gnu-build-system)
2544 (inputs
2545 `(("libcrypto" ,openssl)
2546 ("libtcl8.6" ,tcl))) ; required for running the tests
2547 (native-inputs
2548 `(("tcl" ,tcl)))
2549 (arguments
2550 '(#:configure-flags
2551 '("--enable-tempstore=yes"
2552 "CFLAGS=-DSQLITE_HAS_CODEC -DSQLITE_ENABLE_FTS3"
2553 "LDFLAGS=-lcrypto -ltcl8.6"
2554 "--disable-tcl")
2555 ;; tests cannot be run from the Makefile
2556 ;; see: <https://github.com/sqlcipher/sqlcipher/issues/172>
2557 #:test-target "testfixture"
2558 #:phases
2559 (modify-phases %standard-phases
2560 (add-before 'check 'build-test-runner
2561 (assoc-ref %standard-phases 'check))
2562 (replace 'check
2563 (lambda _
96272e28 2564 (invoke "./testfixture" "test/crypto.test"))))))
62ea44fc
AP
2565 (home-page "https://www.zetetic.net/sqlcipher/")
2566 (synopsis
2567 "Library providing transparent encryption of SQLite database files")
2568 (description "SQLCipher is an implementation of SQLite, extended to
2569provide transparent 256-bit AES encryption of database files. Pages are
2570encrypted before being written to disk and are decrypted when read back. It’s
2571well suited for protecting embedded application databases and for mobile
2572development.")
2573 ;; The source files
2574 ;; src/{crypto.c,crypto_impl.c,crypto.h,crypto_cc.c,crypto_libtomcrypt.c},
2575 ;; src/{crypto_openssl.c,sqlcipher.h}, tool/crypto-speedtest.tcl,
2576 ;; test/crypto.test are licensed under a 3-clause BSD license. All other
2577 ;; source files are in the public domain.
2578 (license (list license:public-domain license:bsd-3))))
98d403bb
DM
2579
2580(define-public python-pyodbc-c
2581 (package
2582 (name "python-pyodbc-c")
c6b6a74e 2583 (version "3.1.4")
98d403bb
DM
2584 (source
2585 (origin
2586 (method url-fetch)
2587 (uri (string-append "https://gitlab.com/daym/pyodbc-c/repository/"
2588 "archive.tar.gz?ref=v" version))
2589 (sha256
2590 (base32
c6b6a74e 2591 "05aq2297k779xidmxcwkrrxjvj1bh2q7d9a1rcjv6zr15y764ga9"))
98d403bb
DM
2592 (file-name (string-append name "-" version ".tar.gz"))))
2593 (build-system python-build-system)
2594 (inputs
2595 `(("unixodbc" ,unixodbc)))
2596 (arguments
2597 `(;; No unit tests exist.
2598 #:tests? #f))
2599 (home-page "https://github.com/mkleehammer/pyodbc")
2600 (synopsis "Python ODBC Library")
2601 (description "@code{python-pyodbc-c} provides a Python DB-API driver
2602for ODBC.")
2603 (license (license:x11-style "file://LICENSE.TXT"))))
2604
2605(define-public python2-pyodbc-c
2606 (package-with-python2 python-pyodbc-c))
d39a84e8 2607
41916bea
DM
2608(define-public python-pyodbc
2609 (package
2610 (name "python-pyodbc")
dbc8a6e7 2611 (version "4.0.30")
41916bea
DM
2612 (source
2613 (origin
2614 (method url-fetch)
2615 (uri (pypi-uri "pyodbc" version))
2616 (sha256
dbc8a6e7 2617 (base32 "0skjpraar6hcwsy82612bpj8nw016ncyvvq88j5syrikxgp5saw5"))
41916bea
DM
2618 (file-name (string-append name "-" version ".tar.gz"))))
2619 (build-system python-build-system)
2620 (inputs
2621 `(("unixodbc" ,unixodbc)))
2622 (arguments
d5be746a 2623 `(#:tests? #f)) ; no unit tests exist
41916bea
DM
2624 (home-page "https://github.com/mkleehammer/pyodbc")
2625 (synopsis "Python ODBC Library")
2626 (description "@code{python-pyodbc} provides a Python DB-API driver
2627for ODBC.")
2628 (license (license:x11-style "file:///LICENSE.TXT"))))
2629
2630(define-public python2-pyodbc
2631 (package-with-python2 python-pyodbc))
2632
d39a84e8
AI
2633(define-public mdbtools
2634 (package
2635 (name "mdbtools")
2636 (version "0.7.1")
2637 (source
2638 (origin
f1f1cebd
RW
2639 (method git-fetch)
2640 (uri (git-reference
b0e7b699 2641 (url "https://github.com/brianb/mdbtools")
f1f1cebd
RW
2642 (commit version)))
2643 (file-name (git-file-name name version))
d39a84e8
AI
2644 (sha256
2645 (base32
f1f1cebd 2646 "0gwcpp9y09xhs21g7my2fs8ncb8i6ahlyixcx8jd3q97jbzj441l"))))
d39a84e8
AI
2647 (build-system gnu-build-system)
2648 (inputs
2649 `(("glib" ,glib)))
2650 (native-inputs
2651 `(("autoconf" ,autoconf)
2652 ("automake" ,automake)
2653 ("libtool" ,libtool)
2654 ("pkg-config" ,pkg-config)
2655 ("txt2man" ,txt2man)
2656 ("which" ,which)))
d39a84e8
AI
2657 (home-page "http://mdbtools.sourceforge.net/")
2658 (synopsis "Read Microsoft Access databases")
2659 (description "MDB Tools is a set of tools and applications to read the
2660proprietary MDB file format used in Microsoft's Access database package. This
2661includes programs to export schema and data from Microsoft's Access database
2662file format to other databases such as MySQL, Oracle, Sybase, PostgreSQL,
2663etc., and an SQL engine for performing simple SQL queries.")
2664 (license (list license:lgpl2.0
2665 license:gpl2+))))
07041d95
TGR
2666
2667(define-public python-lmdb
2668 (package
2669 (name "python-lmdb")
771c266b 2670 (version "1.0.0")
07041d95
TGR
2671 (source (origin
2672 (method url-fetch)
2673 (uri (pypi-uri "lmdb" version))
2674 (sha256
2675 (base32
771c266b 2676 "1di1gj2agbxwqqwrpk4w58dpfah0kl10ha20s63dlqdd1bgzydj1"))
07041d95
TGR
2677 (modules '((guix build utils)))
2678 (snippet
2679 ;; Delete bundled lmdb source files.
6cbee49d
MW
2680 '(begin
2681 (for-each delete-file (list "lib/lmdb.h"
2682 "lib/mdb.c"
2683 "lib/midl.c"
2684 "lib/midl.h"))
2685 #t))))
07041d95
TGR
2686 (build-system python-build-system)
2687 (inputs
2688 `(("lmdb" ,lmdb)))
2689 (arguments
2690 `(#:phases
2691 (modify-phases %standard-phases
2692 (add-before 'build 'use-system-lmdb
2693 (lambda* (#:key inputs #:allow-other-keys)
2694 (let ((lmdb (assoc-ref inputs "lmdb")))
771c266b 2695 (setenv "LMDB_PURE" "set") ; don't apply env-copy-txn.patch
07041d95
TGR
2696 (setenv "LMDB_FORCE_SYSTEM" "set")
2697 (setenv "LMDB_INCLUDEDIR" (string-append lmdb "/include"))
2698 (setenv "LMDB_LIBDIR" (string-append lmdb "/lib"))
2699 #t))))
2700 ;; Tests fail with: ‘lmdb.tool: Please specify environment (--env)’.
2701 #:tests? #f))
2702 (home-page "https://github.com/dw/py-lmdb")
2703 (synopsis "Python binding for the ‘Lightning’ database (LMDB)")
2704 (description
2705 "python-lmdb or py-lmdb is a Python binding for the @dfn{Lightning
2706Memory-Mapped Database} (LMDB), a high-performance key-value store.")
2707 (license
2708 (list license:openldap2.8
2709 ;; ‘lib/win32/inttypes.h’ and ‘lib/win32-stdint/stdint.h’ are BSD-3,
2710 ;; but not actually needed on platforms currently supported by Guix.
2711 license:bsd-3))))
2712
da1f7a9e
BW
2713(define-public python-orator
2714 (package
2715 (name "python-orator")
51d42caa 2716 (version "0.9.9")
da1f7a9e
BW
2717 (source (origin
2718 (method url-fetch)
2719 (uri (pypi-uri "orator" version))
2720 (sha256
2721 (base32
51d42caa 2722 "0mbgybz63ryhr9p1f4glnls5c57jp6il3dw0kf97f3pj80687rvg"))))
da1f7a9e 2723 (build-system python-build-system)
51d42caa
MB
2724 ;; FIXME: Tests are not distributed with PyPI, and the repository
2725 ;; does not contain setup.py. How to test?
2726 (arguments '(#:tests? #f))
da1f7a9e
BW
2727 (propagated-inputs
2728 `(("python-backpack" ,python-backpack)
2729 ("python-blinker" ,python-blinker)
2730 ("python-cleo" ,python-cleo)
2731 ("python-faker" ,python-faker)
2732 ("python-inflection" ,python-inflection)
2733 ("python-lazy-object-proxy" ,python-lazy-object-proxy)
2734 ("python-pendulum" ,python-pendulum)
2735 ("python-pyaml" ,python-pyaml)
2736 ("python-pygments" ,python-pygments)
51d42caa 2737 ("python-pyyaml" ,python-pyyaml)
da1f7a9e
BW
2738 ("python-simplejson" ,python-simplejson)
2739 ("python-six" ,python-six)
2740 ("python-wrapt" ,python-wrapt)))
2741 (home-page "https://orator-orm.com/")
2742 (synopsis "ActiveRecord ORM for Python")
2743 (description
2744 "Orator provides a simple ActiveRecord-like Object Relational Mapping
2745implementation for Python.")
2746 (license license:expat)
2747 (properties `((python2-variant . ,(delay python2-orator))))))
2748
2749(define-public python2-orator
2750 (package-with-python2 (strip-python2-variant python-orator)))
61ce0998
RJ
2751
2752(define-public virtuoso-ose
2753 (package
2754 (name "virtuoso-ose")
e63da346 2755 (version "7.2.5")
61ce0998
RJ
2756 (source
2757 (origin
2758 (method url-fetch)
2759 (uri (string-append
2760 "https://github.com/openlink/virtuoso-opensource/releases/"
2761 "download/v" version "/virtuoso-opensource-" version ".tar.gz"))
2762 (sha256
e63da346 2763 (base32 "0r1xakclkfi69pzh8z2k16z3x0m49pxp764icj0ad4w4bb97fr42"))))
61ce0998
RJ
2764 (build-system gnu-build-system)
2765 (arguments
6d09a7b5
RJ
2766 `(#:tests? #f ; Tests require a network connection.
2767 ;; TODO: Removing the libsrc/zlib source directory breaks the build.
2768 ;; This indicates that the internal zlib code may still be used.
2769 #:configure-flags '("--without-internal-zlib"
d26bf529
RJ
2770 "--with-readline"
2771 "--enable-static=no")
2772 #:phases
2773 (modify-phases %standard-phases
2774 ;; Even with "--enable-static=no", "libvirtuoso-t.a" is left in
2775 ;; the build output. The following phase removes it.
2776 (add-after 'install 'remove-static-libs
2777 (lambda* (#:key outputs #:allow-other-keys)
2778 (let ((lib (string-append (assoc-ref outputs "out") "/lib")))
2779 (for-each (lambda (file)
2780 (delete-file (string-append lib "/" file)))
2781 '("libvirtuoso-t.a"
2782 "libvirtuoso-t.la"))))))))
61ce0998 2783 (inputs
95c633e0 2784 `(("openssl" ,openssl-1.0)
6d09a7b5
RJ
2785 ("net-tools" ,net-tools)
2786 ("readline" ,readline)
2787 ("zlib" ,zlib)))
61ce0998
RJ
2788 (home-page "http://vos.openlinksw.com/owiki/wiki/VOS/")
2789 (synopsis "Multi-model database system")
2790 (description "Virtuoso is a scalable cross-platform server that combines
2791relational, graph, and document data management with web application server
2792and web services platform functionality.")
48b68c61
EF
2793 ;; configure: error: ... can only be build on 64bit platforms
2794 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))
61ce0998 2795 (license license:gpl2)))
74248d22 2796
a8714bf6
RW
2797(define-public python-ccm
2798 (package
2799 (name "python-ccm")
2800 (version "2.1.6")
2801 (source
2802 (origin
2803 (method url-fetch)
2804 (uri (pypi-uri "ccm" version))
2805 (sha256
2806 (base32
2807 "177dfxsmk3k4cih6fh6v8d91bh4nqx7ns6pc07w7m7i3cvdx3c8n"))))
2808 (build-system python-build-system)
2809 (propagated-inputs
2810 `(("python-pyyaml" ,python-pyyaml)
2811 ;; Not listed in setup.py, but used in ccmlib/node.py for full
2812 ;; functionality
2813 ("python-psutil" ,python-psutil)
2814 ("python-six" ,python-six)))
2815 (home-page "https://github.com/pcmanus/ccm")
2816 (synopsis "Cassandra Cluster Manager for Apache Cassandra clusters on
2817localhost")
2818 (description "Cassandra Cluster Manager is a development tool for testing
2819local Cassandra clusters. It creates, launches and removes Cassandra clusters
2820on localhost.")
2821 (license license:asl2.0)))
2822
2823(define-public python2-ccm
2824 (package-with-python2 python-ccm))
2825
2826(define-public python2-pysqlite
2827 (package
2828 (name "python2-pysqlite")
2829 (version "2.8.3")
2830 (source
2831 (origin
2832 (method url-fetch)
2833 (uri (pypi-uri "pysqlite" version))
2834 (sha256
2835 (base32
2836 "1424gwq9sil2ffmnizk60q36vydkv8rxs6m7xs987kz8cdc37lqp"))))
2837 (build-system python-build-system)
2838 (inputs
2839 `(("sqlite" ,sqlite)))
2840 (arguments
2841 `(#:python ,python-2 ; incompatible with Python 3
2842 #:tests? #f)) ; no test target
2843 (home-page "https://github.com/ghaering/pysqlite")
2844 (synopsis "SQLite bindings for Python")
2845 (description
2846 "Pysqlite provides SQLite bindings for Python that comply to the
2847Database API 2.0T.")
2848 (license license:zlib)))
2849
2850(define-public python-sqlalchemy
2851 (package
2852 (name "python-sqlalchemy")
7969a6ad 2853 (version "1.3.20")
a8714bf6
RW
2854 (source
2855 (origin
2856 (method url-fetch)
aeec4a8f 2857 (uri (pypi-uri "SQLAlchemy" version))
a8714bf6 2858 (sha256
7969a6ad 2859 (base32 "18b9am7bsqc4nj3d2h5r93i002apczxfvpfpcqbd6f0385zmrwnj"))))
a8714bf6
RW
2860 (build-system python-build-system)
2861 (native-inputs
6d04f694 2862 `(("python-cython" ,python-cython) ; for C extensions
a8714bf6 2863 ("python-pytest" ,python-pytest)
6d04f694 2864 ("python-mock" ,python-mock))) ; for tests
a8714bf6
RW
2865 (arguments
2866 `(#:phases
2867 (modify-phases %standard-phases
2868 (replace 'check
9871a896 2869 (lambda _ (invoke "py.test"))))))
5cfe650b 2870 (home-page "https://www.sqlalchemy.org")
a8714bf6
RW
2871 (synopsis "Database abstraction library")
2872 (description
2873 "SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that
2874gives application developers the full power and flexibility of SQL. It
2875provides a full suite of well known enterprise-level persistence patterns,
2876designed for efficient and high-performing database access, adapted into a
2877simple and Pythonic domain language.")
2878 (license license:x11)))
2879
2880(define-public python2-sqlalchemy
2881 (package-with-python2 python-sqlalchemy))
2882
2883(define-public python-sqlalchemy-utils
2884 (package
2885 (name "python-sqlalchemy-utils")
53ae35e4 2886 (version "0.32.21")
a8714bf6
RW
2887 (source
2888 (origin
2889 (method url-fetch)
2890 (uri (pypi-uri "SQLAlchemy-Utils" version))
2891 (sha256
2892 (base32
53ae35e4 2893 "1myn71dn8j74xglyh46f12sh8ywb7j0j732rzwq70kvwwnq32m73"))))
a8714bf6
RW
2894 (build-system python-build-system)
2895 (arguments
2896 '(#:tests? #f)) ; FIXME: Many tests require a running database server.
2897 ;; #:phases
2898 ;; (modify-phases %standard-phases
2899 ;; (replace 'check
2900 ;; (lambda _
2901 ;; (zero? (system* "py.test" "sqlalchemy_utils" "tests")))))
2902 (propagated-inputs
2903 `(("python-six" ,python-six)
2904 ("python-sqlalchemy" ,python-sqlalchemy)))
2905 (native-inputs
2906 `(("python-dateutil" ,python-dateutil)
2907 ("python-flexmock" ,python-flexmock)
2908 ("python-psycopg2" ,python-psycopg2)
2909 ("python-pytest" ,python-pytest)
2910 ("python-pytz" ,python-pytz)))
2911 (home-page "https://github.com/kvesteri/sqlalchemy-utils")
2912 (synopsis "Various utility functions for SQLAlchemy")
2913 (description
2914 "SQLAlchemy-utils provides various utility functions and custom data types
2915for SQLAlchemy. SQLAlchemy is an SQL database abstraction library for Python.
2916
2917You might also want to install the following optional dependencies:
2918@enumerate
2919@item @code{python-passlib}
2920@item @code{python-babel}
2921@item @code{python-cryptography}
2922@item @code{python-pytz}
2923@item @code{python-psycopg2}
2924@item @code{python-furl}
2925@item @code{python-flask-babel}
2926@end enumerate
2927")
2928 (license license:bsd-3)))
2929
2930(define-public python2-sqlalchemy-utils
2931 (package-with-python2 python-sqlalchemy-utils))
2932
de84d3b1
MB
2933(define-public python-alchemy-mock
2934 (package
2935 (name "python-alchemy-mock")
2936 (version "0.4.3")
2937 (home-page "https://github.com/miki725/alchemy-mock")
2938 (source (origin
2939 (method url-fetch)
2940 (uri (pypi-uri "alchemy-mock" version))
2941 (sha256
2942 (base32
2943 "0ylxygl3bcdapzz529n8wgk7vx9gjwb3ism564ypkpd7dbsw653r"))))
2944 (build-system python-build-system)
2945 (arguments
2946 '(#:phases (modify-phases %standard-phases
2947 (replace 'check
2948 (lambda _
2949 ;; Create pytest.ini that adds doctest options to
2950 ;; prevent test failure. Taken from tox.ini.
2951 (call-with-output-file "pytest.ini"
2952 (lambda (port)
2953 (format port "[pytest]
2954doctest_optionflags=IGNORE_EXCEPTION_DETAIL
2955")))
2956 (invoke "pytest" "-vv" "--doctest-modules"
2957 "alchemy_mock/"))))))
2958 (native-inputs
2959 `(("python-mock" ,python-mock)
2960 ("python-pytest" ,python-pytest)))
2961 (propagated-inputs
2962 `(("python-six" ,python-six)
2963 ("python-sqlalchemy" ,python-sqlalchemy)))
2964 (synopsis "Mock helpers for SQLAlchemy")
2965 (description
2966 "This package provides mock helpers for SQLAlchemy that makes it easy
2967to mock an SQLAlchemy session while preserving the ability to do asserts.
2968
2969Normally Normally SQLAlchemy's expressions cannot be easily compared as
2970comparison on binary expression produces yet another binary expression, but
2971this library provides functions to facilitate such comparisons.")
2972 (license license:expat)))
2973
a8714bf6
RW
2974(define-public python-alembic
2975 (package
2976 (name "python-alembic")
63d37b3c 2977 (version "1.4.3")
a8714bf6
RW
2978 (source
2979 (origin
2980 (method url-fetch)
2981 (uri (pypi-uri "alembic" version))
2982 (sha256
63d37b3c 2983 (base32 "0if2dgb088clk738p26bwk50735h6jpd2kacdgc5capv2hiz6d2k"))))
a8714bf6 2984 (build-system python-build-system)
45ebd90c
MB
2985 (arguments
2986 '(#:phases (modify-phases %standard-phases
2987 (replace 'check
2988 (lambda _
2989 (invoke "pytest" "-vv"))))))
a8714bf6
RW
2990 (native-inputs
2991 `(("python-mock" ,python-mock)
2992 ("python-pytest-cov" ,python-pytest-cov)))
2993 (propagated-inputs
2994 `(("python-dateutil" ,python-dateutil)
2995 ("python-sqlalchemy" ,python-sqlalchemy)
2996 ("python-mako" ,python-mako)
2997 ("python-editor" ,python-editor)))
a7f27da7 2998 (home-page "https://bitbucket.org/zzzeek/alembic")
6743080c 2999 (synopsis "Database migration tool for SQLAlchemy")
a8714bf6
RW
3000 (description
3001 "Alembic is a lightweight database migration tool for usage with the
3002SQLAlchemy Database Toolkit for Python.")
3003 (license license:expat)))
3004
3005(define-public python2-alembic
3006 (package-with-python2 python-alembic))
3007
3008(define-public python-pickleshare
3009 (package
3010 (name "python-pickleshare")
f825faa5 3011 (version "0.7.5")
a8714bf6
RW
3012 (source
3013 (origin
3014 (method url-fetch)
ed519b3c 3015 (uri (pypi-uri "pickleshare" version))
a8714bf6 3016 (sha256
f825faa5 3017 (base32 "1jmghg3c53yp1i8cm6pcrm280ayi8621rwyav9fac7awjr3kss47"))))
a8714bf6 3018 (build-system python-build-system)
ff856cfd
MB
3019 (arguments
3020 `(#:phases (modify-phases %standard-phases
3021 (replace 'check
3022 (lambda _
3023 (invoke "pytest"))))))
3024 (native-inputs
3025 `(("python-pytest" ,python-pytest)))
a8714bf6
RW
3026 (home-page "https://github.com/vivainio/pickleshare")
3027 (synopsis "Tiny key value database with concurrency support")
3028 (description
3029 "PickleShare is a small ‘shelve’-like datastore with concurrency support.
3030Like shelve, a PickleShareDB object acts like a normal dictionary. Unlike
3031shelve, many processes can access the database simultaneously. Changing a
3032value in database is immediately visible to other processes accessing the same
3033database. Concurrency is possible because the values are stored in separate
3034files. Hence the “database” is a directory where all files are governed by
3035PickleShare.")
ed519b3c 3036 (properties `((python2-variant . ,(delay python2-pickleshare))))
a8714bf6
RW
3037 (license license:expat)))
3038
3039(define-public python2-pickleshare
ed519b3c
MB
3040 (let ((pickleshare (package-with-python2
3041 (strip-python2-variant python-pickleshare))))
3042 (package (inherit pickleshare)
3043 (propagated-inputs `(("python2-pathlib2" ,python2-pathlib2)
3044 ,@(package-propagated-inputs pickleshare))))))
a8714bf6
RW
3045
3046(define-public python-apsw
3047 (package
3048 (name "python-apsw")
d05e3b08 3049 (version "3.31.1-r1")
a8714bf6
RW
3050 (source
3051 (origin
3052 (method url-fetch)
9930beb8
EF
3053 (uri (string-append "https://github.com/rogerbinns/apsw/releases"
3054 "/download/" version "/apsw-" version ".zip"))
a8714bf6
RW
3055 (sha256
3056 (base32
d05e3b08 3057 "1gap5lr6c7bp134nzvfwr693i6d0fqyaysg3ms2cayjldv616yfx"))))
a8714bf6 3058 (build-system python-build-system)
9930beb8
EF
3059 (native-inputs
3060 `(("unzip" ,unzip)))
a8714bf6 3061 (inputs
c553b08b 3062 `(("sqlite" ,sqlite)))
a8714bf6
RW
3063 (arguments
3064 `(#:phases
3065 (modify-phases %standard-phases
3066 (replace 'build
3067 (lambda _
c553b08b
EF
3068 (invoke "python" "setup.py" "build" "--enable-all-extensions")
3069 #t))
a8714bf6
RW
3070 (add-after 'build 'build-test-helper
3071 (lambda _
c553b08b
EF
3072 (invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
3073 "-I." "-Isqlite3" "src/testextension.c")
3074 #t))
53a9970e 3075 (replace 'check
a8714bf6
RW
3076 (lambda* (#:key inputs outputs #:allow-other-keys)
3077 (add-installed-pythonpath inputs outputs)
c553b08b
EF
3078 (invoke "python" "setup.py" "test")
3079 #t)))))
a8714bf6
RW
3080 (home-page "https://github.com/rogerbinns/apsw/")
3081 (synopsis "Another Python SQLite Wrapper")
3082 (description "APSW is a Python wrapper for the SQLite
3083embedded relational database engine. In contrast to other wrappers such as
3084pysqlite it focuses on being a minimal layer over SQLite attempting just to
3085translate the complete SQLite API into Python.")
3086 (license license:zlib)))
3087
3088(define-public python2-apsw
3089 (package-with-python2 python-apsw))
3090
ba0b249d
LDB
3091(define-public python-aiosqlite
3092 (package
3093 (name "python-aiosqlite")
4b800bff 3094 (version "0.12.0")
ba0b249d
LDB
3095 (source
3096 (origin
3097 (method url-fetch)
3098 (uri (pypi-uri "aiosqlite" version))
3099 (sha256
3100 (base32
4b800bff 3101 "1w8248yz85xyzvvh4jaxnc59fqil45aka6h82kn1rcih4rjxbnn1"))))
ba0b249d
LDB
3102 (build-system python-build-system)
3103 (native-inputs
3104 `(("python-aiounittest" ,python-aiounittest)))
3105 (home-page "https://github.com/jreese/aiosqlite")
3106 (synopsis
3107 "Asyncio bridge for sqlite3")
3108 (description
3109 "The package aiosqlite replicates the standard sqlite3 module, but with
3110async versions of all the standard connection and cursor methods, and context
3111managers for automatically closing connections.")
3112 (license license:expat)))
3113
a8714bf6
RW
3114(define-public python2-neo4j-driver
3115 (package
3116 (name "python2-neo4j-driver")
3117 ;; NOTE: When upgrading to 1.5.0, please add a python3 variant.
3118 (version "1.4.0")
3119 (source (origin
3120 (method url-fetch)
3121 (uri (pypi-uri "neo4j-driver" version))
3122 (sha256
3123 (base32
3124 "011r1vh182p8mm83d8dz9rfnc3l7rf7fd00cyrbyfzi71jmc4g98"))))
3125 (build-system python-build-system)
3126 (arguments
3127 `(#:python ,python-2))
3128 (home-page "https://neo4j.com/developer/python/")
3129 (synopsis "Neo4j driver code written in Python")
3130 (description "This package provides the Neo4j Python driver that connects
3131to the database using Neo4j's binary protocol. It aims to be minimal, while
3132being idiomatic to Python.")
3133 (license license:asl2.0)))
3134
3135(define-public python2-py2neo
3136 (package
3137 (name "python2-py2neo")
3138 (version "3.1.2")
3139 (source (origin
3140 (method url-fetch)
3141 (uri (pypi-uri "py2neo" version))
3142 (sha256
3143 (base32
3144 "1f1q95vqcvlc3nsc33p841swnjdcjazddlq2dzi3qfnjqjrajxw1"))))
3145 (build-system python-build-system)
3146 (arguments
3147 `(#:python ,python-2))
1084e86b 3148 (home-page "https://py2neo.org")
a8714bf6
RW
3149 (synopsis "Library and toolkit for working with Neo4j in Python")
3150 (description "This package provides a client library and toolkit for
3151working with Neo4j from within Python applications and from the command
3152line. The core library has no external dependencies and has been carefully
3153designed to be easy and intuitive to use.")
3154 (license license:asl2.0)))
3155
3156(define-public python-psycopg2
3157 (package
3158 (name "python-psycopg2")
dc2f0e70 3159 (version "2.8.6")
a8714bf6
RW
3160 (source
3161 (origin
3162 (method url-fetch)
3163 (uri (pypi-uri "psycopg2" version))
3164 (sha256
dc2f0e70 3165 (base32 "0hzmk6b1hb5riqkljr5xics6p4zbvmis6knbczb7zhq7273zc8zv"))))
a8714bf6
RW
3166 (build-system python-build-system)
3167 (arguments
3168 ;; Tests would require a postgresql database "psycopg2_test"
3169 ;; and a running postgresql database management service.
3170 `(#:tests? #f)) ; TODO re-enable after providing a test-db.
3171 (inputs
3172 `(("postgresql" ,postgresql))) ; libpq
3173 (home-page "http://initd.org/psycopg/")
3174 (synopsis "Python PostgreSQL adapter")
3175 (description
19601e89
BW
3176 "psycopg2 is a thread-safe PostgreSQL adapter that implements DB-API
31772.0.")
a8714bf6
RW
3178 (license license:lgpl3+)))
3179
3180(define-public python2-psycopg2
3181 (package-with-python2 python-psycopg2))
3182
3183(define-public python-sadisplay
3184 (package
3185 (name "python-sadisplay")
bcdc5cae 3186 (version "0.4.8")
a8714bf6
RW
3187 (source
3188 (origin
3189 (method url-fetch)
3190 (uri (pypi-uri "sadisplay" version))
3191 (sha256
3192 (base32
bcdc5cae 3193 "01d9lxhmgpb68gy8rd6zj6fcwp84n2qq210n1qsk3qbsir79bzh4"))))
a8714bf6
RW
3194 (build-system python-build-system)
3195 (propagated-inputs
3196 `(("python-sqlalchemy" ,python-sqlalchemy)))
3197 (native-inputs
bcdc5cae 3198 ;; For tests.
a8714bf6
RW
3199 `(("python-nose" ,python-nose)))
3200 (home-page "https://bitbucket.org/estin/sadisplay")
3201 (synopsis "SQLAlchemy schema displayer")
3202 (description "This package provides a program to build Entity
3203Relationship diagrams from a SQLAlchemy model (or directly from the
3204database).")
3205 (license license:bsd-3)))
3206
3207(define-public python2-sadisplay
3208 (package-with-python2 python-sadisplay))
3209
945ec6c3
VM
3210(define-public yoyo-migrations
3211 (package
3212 (name "yoyo-migrations")
3213 (version "7.2.0")
3214 (source
3215 (origin
3216 ;; We use the upstream repository, as the tests are not included in the
3217 ;; PyPI releases.
3218 (method hg-fetch)
3219 (uri (hg-reference
3220 (url "https://hg.sr.ht/~olly/yoyo")
3221 (changeset (string-append "v" version "-release"))))
3222 (file-name (string-append name "-" version "-checkout"))
3223 (sha256
3224 (base32 "0q2z9bgdj3wyix7yvqsayfs21grp5av8ilh411lgmjhigszkvhcq"))))
3225 (build-system python-build-system)
3226 (arguments
3227 ;; XXX: Tests require a connection to some pgsql database and psycopg
3228 ;; fails to connect to it.
3229 '(#:tests? #f))
3230 (propagated-inputs
3231 `(("python-sqlparse" ,python-sqlparse)
3232 ("python-tabulate" ,python-tabulate)))
3233 (home-page "https://ollycope.com/software/yoyo/latest/")
3234 (synopsis "Database migrations with SQL")
3235 (description
3236 "Yoyo is a database schema migration tool. Migrations are written as SQL
3237files or Python scripts that define a list of migration steps.")
3238 (license license:asl2.0)))
3239
a8714bf6
RW
3240(define-public python-mysqlclient
3241 (package
3242 (name "python-mysqlclient")
5ec1feca 3243 (version "2.0.1")
a8714bf6
RW
3244 (source
3245 (origin
3246 (method url-fetch)
3247 (uri (pypi-uri "mysqlclient" version))
3248 (sha256
3249 (base32
5ec1feca 3250 "1rf5l8hazs3v18hmcrm90z3hi9wxv553ipwd5l6kj8j7l6p7abzv"))))
a8714bf6 3251 (build-system python-build-system)
eec6a694 3252 (arguments '(#:tests? #f)) ;XXX: requires a live database
a8714bf6 3253 (inputs
997abda9 3254 `(("mysql-dev" ,mariadb "dev")))
a8714bf6
RW
3255 (home-page "https://github.com/PyMySQL/mysqlclient-python")
3256 (synopsis "MySQLdb is an interface to the popular MySQL database server for Python")
3257 (description "MySQLdb is an interface to the popular MySQL database server
3258for Python. The design goals are:
3259@enumerate
3260@item Compliance with Python database API version 2.0 [PEP-0249],
3261@item Thread-safety,
3262@item Thread-friendliness (threads will not block each other).
3263@end enumerate")
3264 (license license:gpl2)))
3265
a8714bf6
RW
3266(define-public python-hiredis
3267 (package
3268 (name "python-hiredis")
3269 (version "0.2.0")
3270 (source
3271 (origin
3272 (method url-fetch)
3273 (uri (pypi-uri "hiredis" version))
3274 (sha256
3275 (base32
3276 "1dfm2k9l9zar9nw9fwmm74zrgraxdxs04vx9li56fjcf289qx5fa"))))
3277 (build-system python-build-system)
3278 (arguments
3279 ;; no tests
3280 `(#:tests? #f))
3281 (home-page "https://github.com/redis/hiredis-py")
3282 (synopsis "Python extension that wraps protocol parsing code in hiredis")
3283 (description "Python-hiredis is a python extension that wraps protocol
3284parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.")
3285 (license license:bsd-3)))
3286
3287(define-public python2-hiredis
3288 (package-with-python2 python-hiredis))
3289
3290(define-public python-fakeredis
3291 (package
3292 (name "python-fakeredis")
1655e7be 3293 (version "1.2.1")
a8714bf6
RW
3294 (source
3295 (origin
3296 (method url-fetch)
3297 (uri (pypi-uri "fakeredis" version))
3298 (sha256
3299 (base32
1655e7be 3300 "1s12mn4q4hz7402139khn9fx56kibj7nn0d6w81hn0zs07b90wpc"))))
a8714bf6
RW
3301 (build-system python-build-system)
3302 (arguments
3303 ;; no tests
3304 `(#:tests? #f))
1655e7be
TLC
3305 (propagated-inputs
3306 `(("python-sortedcontainers" ,python-sortedcontainers)))
a8714bf6
RW
3307 (home-page "https://github.com/jamesls/fakeredis")
3308 (synopsis "Fake implementation of redis API for testing purposes")
a4764ff0
TGR
3309 (description
3310 "Fakeredis is a pure-Python implementation of the redis-py Python client
3311that simulates talking to a redis server. It was created for a single purpose:
3312to write unit tests.
3313
3314Setting up redis is not hard, but one often wants to write unit tests that don't
3315talk to an external server such as redis. This module can be used as a
3316reasonable substitute.")
a8714bf6
RW
3317 (license license:bsd-3)))
3318
3319(define-public python2-fakeredis
3320 (package-with-python2 python-fakeredis))
3321
3322(define-public python-redis
3323 (package
3324 (name "python-redis")
d87252e6 3325 (version "3.5.3")
a8714bf6
RW
3326 (source
3327 (origin
3328 (method url-fetch)
3329 (uri (pypi-uri "redis" version))
3330 (sha256
d87252e6 3331 (base32 "18h5b87g15x3j6pb1h2q27ri37p2qpvc9n2wgn5yl3b6m3y0qzhf"))))
a8714bf6 3332 (build-system python-build-system)
a263a976 3333 ;; Tests require a running Redis server.
a8714bf6
RW
3334 (arguments '(#:tests? #f))
3335 ;; As long as we are not running test, we do not need this input :-)
3336 ;;(native-inputs
3337 ;; `(("python-pytest" ,python-pytest)))
3338 (home-page "https://github.com/andymccurdy/redis-py")
3339 (synopsis "Redis Python client")
3340 (description
3341 "This package provides a Python interface to the Redis key-value store.")
3342 (license license:expat)))
3343
3344(define-public python2-redis
3345 (package-with-python2 python-redis))
3346
3347(define-public python-rq
3348 (package
3349 (name "python-rq")
4436a27c 3350 (version "1.5.2")
a8714bf6
RW
3351 (source
3352 (origin
b462caaf
MB
3353 (method git-fetch)
3354 (uri (git-reference
3355 (url "https://github.com/rq/rq")
3356 (commit (string-append "v" version))))
3357 (file-name (git-file-name name version))
a8714bf6 3358 (sha256
4436a27c 3359 (base32 "0ikqmpq0g1qiqwd7ar1286l4hqjb6aj2wr844gihhb8ijzwhp8va"))))
a8714bf6 3360 (build-system python-build-system)
b462caaf
MB
3361 (arguments
3362 '(#:phases (modify-phases %standard-phases
3363 (add-before 'check 'start-redis
3364 (lambda _
3365 (invoke "redis-server" "--daemonize" "yes")))
3366 (replace 'check
3367 (lambda* (#:key outputs #:allow-other-keys)
3368 (let ((out (assoc-ref outputs "out")))
3369 ;; Drop test that needs the SDK for Sentry.io.
3370 (delete-file "tests/test_sentry.py")
3371 ;; Ensure 'rq' and 'rqworker' ends up on PATH.
3372 (setenv "PATH" (string-append out "/bin:"
3373 (getenv "PATH")))
3374 (invoke "pytest" "-vv")))))))
3375 (native-inputs
3376 `(("python-mock" ,python-mock)
3377 ("python-pytest" ,python-pytest)
3378 ("redis" ,redis)))
a8714bf6
RW
3379 (propagated-inputs
3380 `(("python-click" ,python-click)
3381 ("python-redis" ,python-redis)))
4e5ad79e 3382 (home-page "https://python-rq.org/")
a8714bf6
RW
3383 (synopsis "Simple job queues for Python")
3384 (description
3385 "RQ (Redis Queue) is a simple Python library for queueing jobs and
3386processing them in the background with workers. It is backed by Redis and it
3387is designed to have a low barrier to entry.")
3388 (license license:bsd-2)))
3389
3390(define-public python2-rq
3391 (package-with-python2 python-rq))
3392
8a88efce
MB
3393(define-public python-rq-scheduler
3394 (package
3395 (name "python-rq-scheduler")
3396 (version "0.10.0")
3397 (home-page "https://github.com/rq/rq-scheduler")
3398 (source (origin
3399 (method git-fetch)
3400 (uri (git-reference
3401 (url home-page)
3402 (commit (string-append "v" version))))
3403 (file-name (git-file-name name version))
3404 (sha256
3405 (base32
3406 "0xg6yazqs5kbr2ayvhvljs1h5vgx5k5dds613fmhswln7gglf9hk"))))
3407 (build-system python-build-system)
3408 (arguments
3409 '(#:phases (modify-phases %standard-phases
3410 (add-before 'check 'start-redis
3411 (lambda _
3412 (invoke "redis-server" "--daemonize" "yes")))
3413 (replace 'check
3414 (lambda _
3415 (substitute* "run_tests.py"
3416 (("/usr/bin/env")
3417 (which "env")))
3418 (invoke "./run_tests.py"))))))
3419 (native-inputs
3420 `(("redis" ,redis)
3421 ("which" ,which)))
3422 (propagated-inputs
3423 `(("python-croniter" ,python-croniter)
3424 ("python-rq" ,python-rq)))
3425 (synopsis "Job scheduling capabilities for RQ (Redis Queue)")
3426 (description
3427 "This package provides job scheduling capabilities to @code{python-rq}
3428(Redis Queue).")
3429 (license license:expat)))
3430
a8714bf6
RW
3431(define-public python-trollius-redis
3432 (package
3433 (name "python-trollius-redis")
3434 (version "0.1.4")
3435 (source
3436 (origin
3437 (method url-fetch)
3438 (uri (pypi-uri "trollius_redis" version))
3439 (sha256
3440 (base32
3441 "0k3vypszmgmaipgw9xscvgm79h2zd6p6ci8gdp5sxl6g5kbqr9fy"))))
3442 (build-system python-build-system)
3443 ;; TODO: Tests require packaging 'hiredis'.
3444 (arguments '(#:tests? #f))
3445 (home-page "https://github.com/benjolitz/trollius-redis")
3446 (synopsis "Port of asyncio-redis to trollius")
3447 (description "@code{trollius-redis} is a Redis client for Python
d087a3a6 3448 trollius. It is an asynchronous IO (PEP 3156) implementation of the
a8714bf6
RW
3449 Redis protocol.")
3450 (license license:bsd-2)))
3451
3452(define-public python2-trollius-redis
3453 (package-with-python2 python-trollius-redis))
3454
3455(define-public python-sqlparse
3456 (package
3457 (name "python-sqlparse")
d343e0fe 3458 (version "0.3.1")
a8714bf6
RW
3459 (source (origin
3460 (method url-fetch)
3461 (uri (pypi-uri "sqlparse" version))
3462 (sha256
3463 (base32
d343e0fe 3464 "0j652a6z7bdf6c77aczfn8m8b2nsr1bcqq48wzghf8vi6wvj0qp1"))))
a8714bf6
RW
3465 (build-system python-build-system)
3466 (arguments
3467 `(#:phases
3468 (modify-phases %standard-phases
3469 (replace 'check
96272e28 3470 (lambda _ (invoke "py.test"))))))
a8714bf6
RW
3471 (native-inputs
3472 `(("python-pytest" ,python-pytest)))
3473 (home-page "https://github.com/andialbrecht/sqlparse")
3474 (synopsis "Non-validating SQL parser")
3475 (description "Sqlparse is a non-validating SQL parser for Python. It
3476provides support for parsing, splitting and formatting SQL statements.")
3477 (license license:bsd-3)))
3478
3479(define-public python2-sqlparse
3480 (package-with-python2 python-sqlparse))
3481
3482(define-public python-sql
3483 (package
3484 (name "python-sql")
909404b5 3485 (version "1.0.0")
a8714bf6
RW
3486 (source
3487 (origin
3488 (method url-fetch)
3489 (uri (pypi-uri "python-sql" version))
3490 (sha256
909404b5 3491 (base32 "05ni936y0ia9xmryl7mlhbj9i80nnvq1bi4zxhb96rv7yvpb3fqb"))))
a8714bf6
RW
3492 (build-system python-build-system)
3493 (home-page "https://python-sql.tryton.org/")
3494 (synopsis "Library to write SQL queries in a pythonic way")
3495 (description "@code{python-sql} is a library to write SQL queries, that
3496transforms idiomatic python function calls to well-formed SQL queries.")
3497 (license license:bsd-3)))
3498
3499(define-public python2-sql
3500 (package-with-python2 python-sql))
33c88fcb 3501
c8fdf86d
LDB
3502(define-public python-pypika
3503 (package
3504 (name "python-pypika")
da384d99 3505 (version "0.44.0")
c8fdf86d 3506 (source
510472f8
LDB
3507 (origin (method git-fetch)
3508 (uri (git-reference
b0e7b699 3509 (url "https://github.com/kayak/pypika")
510472f8
LDB
3510 (commit (string-append "v" version))))
3511 (file-name (git-file-name name version))
3512 (sha256
3513 (base32
da384d99 3514 "0mpddrw9z1pzcc40j3pzhd583hlgjx96aa8ak6m9zzhpm4bv3ard"))))
c8fdf86d
LDB
3515 (build-system python-build-system)
3516 (native-inputs
3517 `(("python-parameterized" ,python-parameterized)))
3518 (home-page "https://github.com/kayak/pypika")
3519 (synopsis "SQL query builder API for Python")
3520 (description
3521 "PyPika is a python SQL query builder that exposes the full richness of
3522the SQL language using a syntax that reflects the resulting query.")
3523 (license license:asl2.0)))
3524
33c88fcb
CB
3525(define-public mongo-tools
3526 (package
3527 (name "mongo-tools")
3528 (version "3.4.0")
3529 (source
3530 (origin (method git-fetch)
3531 (uri (git-reference
3532 (url "https://github.com/mongodb/mongo-tools")
3533 (commit (string-append "r" version))))
3534 (file-name (git-file-name name version))
3535 (sha256
3536 (base32
9b32bf6e 3537 "1bcsz5cvj39a7nsxsfqmz9igrw33j6yli9kffigqyscs52amw7x1"))))
33c88fcb
CB
3538 (build-system go-build-system)
3539 (arguments
9b32bf6e
CB
3540 `(#:import-path "github.com/mongodb/mongo-tools"
3541 #:modules ((srfi srfi-1)
3542 (guix build go-build-system)
3543 (guix build utils))
e3900a4d 3544 #:install-source? #f
33c88fcb 3545 #:phases
9b32bf6e
CB
3546 (let ((all-tools
3547 '("bsondump" "mongodump" "mongoexport" "mongofiles"
3548 "mongoimport" "mongooplog" "mongorestore"
3549 "mongostat" "mongotop")))
3550 (modify-phases %standard-phases
3551 (add-after 'unpack 'delete-bundled-source-code
3552 (lambda _
3553 (delete-file-recursively
3554 "src/github.com/mongodb/mongo-tools/vendor")
3555 #t))
fe596965
CB
3556 (add-after 'delete-bundled-source-code 'patch-source
3557 (lambda _
3558 ;; Remove a redundant argument that causes compilation to fail.
3559 (substitute*
3560 "src/github.com/mongodb/mongo-tools/mongorestore/filepath.go"
3561 (("skipping restore of system.profile collection\", db)")
3562 "skipping restore of system.profile collection\")"))
3563 #t))
9b32bf6e
CB
3564 (replace 'build
3565 (lambda _
96272e28
MW
3566 (for-each (lambda (tool)
3567 (let ((command
3568 `("go" "build"
3569 ;; This is where the tests expect to find the
3570 ;; executables
3571 "-o" ,(string-append
3572 "src/github.com/mongodb/mongo-tools/bin/"
3573 tool)
3574 "-v"
3575 "-tags=\"ssl sasl\""
3576 "-ldflags"
3577 "-extldflags=-Wl,-z,now,-z,relro"
3578 ,(string-append
3579 "src/github.com/mongodb/mongo-tools/"
3580 tool "/main/" tool ".go"))))
3581 (simple-format #t "build: running ~A\n"
3582 (string-join command))
3583 (apply invoke command)))
3584 all-tools)
3585 #t))
9b32bf6e
CB
3586 (replace 'check
3587 (lambda _
3588 (with-directory-excursion "src"
96272e28
MW
3589 (for-each (lambda (tool)
3590 (invoke
3591 "go" "test" "-v"
3592 (string-append "github.com/mongodb/mongo-tools/"
3593 tool)))
3594 all-tools))
3595 #t))
9b32bf6e
CB
3596 (replace 'install
3597 (lambda* (#:key outputs #:allow-other-keys)
3598 (for-each (lambda (tool)
3599 (install-file
96272e28
MW
3600 (string-append "src/github.com/mongodb/mongo-tools/bin/"
3601 tool)
9b32bf6e
CB
3602 (string-append (assoc-ref outputs "out")
3603 "/bin")))
96272e28
MW
3604 all-tools)
3605 #t))))))
33c88fcb
CB
3606 (native-inputs
3607 `(("go-github.com-howeyc-gopass" ,go-github.com-howeyc-gopass)
3608 ("go-github.com-jessevdk-go-flags" ,go-github.com-jessevdk-go-flags)
561d391b 3609 ("go-golang-org-x-crypto" ,go-golang-org-x-crypto)
33c88fcb
CB
3610 ("go-gopkg.in-mgo.v2" ,go-gopkg.in-mgo.v2)
3611 ("go-gopkg.in-tomb.v2" ,go-gopkg.in-tomb.v2)
9b32bf6e
CB
3612 ("go-github.com-nsf-termbox-go" ,go-github.com-nsf-termbox-go)
3613 ("go-github.com-smartystreets-goconvey" ,go-github.com-smartystreets-goconvey)))
33c88fcb
CB
3614 (home-page "https://github.com/mongodb/mongo-tools")
3615 (synopsis "Various tools for interacting with MongoDB and BSON")
3616 (description
3617 "This package includes a collection of tools related to MongoDB.
3618@table @code
3619@item bsondump
3620Display BSON files in a human-readable format
3621@item mongoimport
3622Convert data from JSON, TSV or CSV and insert them into a collection
3623@item mongoexport
3624Write an existing collection to CSV or JSON format
3625@item mongodump/mongorestore
3626Dump MongoDB backups to disk in the BSON format
3627@item mongorestore
3628Read MongoDB backups in the BSON format, and restore them to a live database
3629@item mongostat
3630Monitor live MongoDB servers, replica sets, or sharded clusters
3631@item mongofiles
3632Read, write, delete, or update files in GridFS
3633@item mongooplog
3634Replay oplog entries between MongoDB servers
3635@item mongotop
3636Monitor read/write activity on a mongo server
3637@end table")
3638 (license license:asl2.0)))
dae7661a 3639
a50628bb
KCB
3640;; There are many wrappers for this in other languages. When touching, please
3641;; be sure to ensure all dependencies continue to build.
dae7661a
LF
3642(define-public apache-arrow
3643 (package
3644 (name "apache-arrow")
a50628bb 3645 (version "0.17.1")
dae7661a 3646 (source
a50628bb
KCB
3647 (origin
3648 (method git-fetch)
3649 (uri (git-reference
3650 (url "https://github.com/apache/arrow")
3651 (commit (string-append "apache-arrow-" version))))
3652 (file-name (git-file-name name version))
3653 (sha256
3654 (base32
3655 "02r6yx3yhywzikd3b0vfkjgddhfiriyx2vpm3jf5880wq59x798a"))))
dae7661a
LF
3656 (build-system cmake-build-system)
3657 (arguments
3658 `(#:tests? #f
3659 #:phases
3660 (modify-phases %standard-phases
3661 (add-before 'configure 'enter-source-directory
3662 (lambda _ (chdir "cpp") #t))
3663 (add-after 'unpack 'set-env
3664 (lambda _
3665 (setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
3666 (setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
3667 (setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs "flatbuffers"))
dae7661a
LF
3668 (setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson"))
3669 #t)))
3def739d 3670 #:build-type "Release"
dae7661a 3671 #:configure-flags
3def739d 3672 (list "-DARROW_PYTHON=ON"
a50628bb
KCB
3673 "-DARROW_GLOG=ON"
3674 ;; Parquet options
3675 "-DARROW_PARQUET=ON"
3676 "-DPARQUET_BUILD_EXECUTABLES=ON"
3677 ;; The maintainers disallow using system versions of
3678 ;; jemalloc:
3679 ;; https://issues.apache.org/jira/browse/ARROW-3507. This
3680 ;; is unfortunate because jemalloc increases performance:
3681 ;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
3682 "-DARROW_JEMALLOC=OFF"
3683
3684 ;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
3685 ;; option that instructs the build system how to resolve
3686 ;; each dependency. SYSTEM = Finding the dependency in
3687 ;; system paths using CMake's built-in find_package
3688 ;; function, or using pkg-config for packages that do not
3689 ;; have this feature
3690 "-DARROW_DEPENDENCY_SOURCE=SYSTEM"
3691
3692 ;; Split output into its component packages.
3693 (string-append "-DCMAKE_INSTALL_PREFIX="
3694 (assoc-ref %outputs "lib"))
3695 (string-append "-DCMAKE_INSTALL_RPATH="
3696 (assoc-ref %outputs "lib")
dae7661a 3697 "/lib")
a50628bb
KCB
3698 (string-append "-DCMAKE_INSTALL_BINDIR="
3699 (assoc-ref %outputs "out")
3700 "/bin")
3701 (string-append "-DCMAKE_INSTALL_INCLUDEDIR="
3702 (assoc-ref %outputs "include")
3703 "/share/include")
3704
3705
3706 "-DARROW_WITH_SNAPPY=ON"
3707 "-DARROW_WITH_ZLIB=ON"
3708 "-DARROW_WITH_ZSTD=ON"
3709 "-DARROW_WITH_LZ4=ON"
3710 "-DARROW_COMPUTE=ON"
3711 "-DARROW_CSV=ON"
3712 "-DARROW_DATASET=ON"
3713 "-DARROW_FILESYSTEM=ON"
3714 "-DARROW_HDFS=ON"
3715 "-DARROW_JSON=ON"
3716 ;; Arrow Python C++ integration library (required for
3717 ;; building pyarrow). This library must be built against
3718 ;; the same Python version for which you are building
3719 ;; pyarrow. NumPy must also be installed. Enabling this
3720 ;; option also enables ARROW_COMPUTE, ARROW_CSV,
3721 ;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
3722 ;; ARROW_JSON.
3723 "-DARROW_PYTHON=ON"
dae7661a
LF
3724
3725 ;; Building the tests forces on all the
3726 ;; optional features and the use of static
3727 ;; libraries.
3728 "-DARROW_BUILD_TESTS=OFF"
a50628bb
KCB
3729 "-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
3730 ;;"-DBENCHMARK_ENABLE_TESTING=OFF"
dae7661a
LF
3731 "-DARROW_BUILD_STATIC=OFF")))
3732 (inputs
3733 `(("boost" ,boost)
dae7661a 3734 ("brotli" ,google-brotli)
a50628bb
KCB
3735 ("double-conversion" ,double-conversion)
3736 ("snappy" ,snappy)
3737 ("gflags" ,gflags)
3738 ("glog" ,glog)
3739 ("apache-thrift" ,apache-thrift "lib")
3740 ("protobuf" ,protobuf)
3741 ("rapidjson" ,rapidjson)
3742 ("zlib" ,zlib)
3743 ("bzip2" ,bzip2)
3744 ("lz4" ,lz4)
3745 ("zstd" ,zstd "lib")
3746 ("re2" ,re2)
3747 ("grpc" ,grpc)
dae7661a
LF
3748 ("python-3" ,python)
3749 ("python-numpy" ,python-numpy)))
a50628bb
KCB
3750 (native-inputs
3751 `(("pkg-config" ,pkg-config)))
3752 (outputs '("out" "lib" "include"))
dae7661a
LF
3753 (home-page "https://arrow.apache.org/")
3754 (synopsis "Columnar in-memory analytics")
3755 (description "Apache Arrow is a columnar in-memory analytics layer
a50628bb 3756designed to accelerate big data. It houses a set of canonical in-memory
dae7661a 3757representations of flat and hierarchical data along with multiple
a50628bb 3758language-bindings for structure manipulation. It also provides IPC and common
dae7661a
LF
3759algorithm implementations.")
3760 (license license:asl2.0)))
5e5ac710
LF
3761
3762(define-public python-pyarrow
3763 (package
a50628bb 3764 (inherit apache-arrow)
5e5ac710 3765 (name "python-pyarrow")
5e5ac710
LF
3766 (build-system python-build-system)
3767 (arguments
a50628bb 3768 '(#:tests? #f ; XXX There are no tests in the "python" directory
5e5ac710
LF
3769 #:phases
3770 (modify-phases %standard-phases
0fa926c2 3771 (delete 'build) ; XXX the build is performed again during the install phase
5e5ac710
LF
3772 (add-after 'unpack 'enter-source-directory
3773 (lambda _ (chdir "python") #t))
a50628bb 3774 (add-after 'unpack 'make-git-checkout-writable
5e5ac710 3775 (lambda _
a50628bb 3776 (for-each make-file-writable (find-files "."))
5e5ac710
LF
3777 #t)))))
3778 (propagated-inputs
a50628bb 3779 `(("apache-arrow" ,apache-arrow "lib")
5e5ac710
LF
3780 ("python-numpy" ,python-numpy)
3781 ("python-pandas" ,python-pandas)
3782 ("python-six" ,python-six)))
3783 (native-inputs
c69959f0 3784 `(("cmake" ,cmake-minimal)
a50628bb 3785 ("pkg-config" ,pkg-config)
5e5ac710
LF
3786 ("python-cython" ,python-cython)
3787 ("python-pytest" ,python-pytest)
0fa926c2 3788 ("python-pytest-runner" ,python-pytest-runner)
5e5ac710 3789 ("python-setuptools-scm" ,python-setuptools-scm)))
a50628bb 3790 (outputs '("out"))
5e5ac710
LF
3791 (home-page "https://arrow.apache.org/docs/python/")
3792 (synopsis "Python bindings for Apache Arrow")
a50628bb
KCB
3793 (description
3794 "This library provides a Pythonic API wrapper for the reference Arrow C++
3795implementation, along with tools for interoperability with pandas, NumPy, and
3796other traditional Python scientific computing packages.")
5e5ac710
LF
3797 (license license:asl2.0)))
3798
3799(define-public python2-pyarrow
3800 (package-with-python2 python-pyarrow))
450d5dc2
PL
3801
3802(define-public python-crate
3803 (package
3804 (name "python-crate")
19181820 3805 (version "0.23.2")
450d5dc2
PL
3806 (source (origin
3807 (method url-fetch)
3808 (uri (pypi-uri "crate" version))
3809 (sha256
3810 (base32
19181820 3811 "0ngmlvi320c5gsxab0s7qgq0ck4jdlcwvb6lbjhnfprafdp56vvx"))))
450d5dc2
PL
3812 (build-system python-build-system)
3813 (propagated-inputs
3814 `(("python-urllib3" ,python-urllib3)))
3815 (home-page "https://github.com/crate/crate-python")
3816 (synopsis "CrateDB Python client")
3817 (description
3818 "This package provides a Python client library for CrateDB.
3819It implements the Python DB API 2.0 specification and includes support for
3820SQLAlchemy.")
3821 (license license:asl2.0)))
ae8a0184
GLV
3822
3823(define-public libdbi
3824 (package
3825 (name "libdbi")
3826 (version "0.9.0")
3827 (source (origin
3828 (method url-fetch)
3829 (uri (string-append "mirror://sourceforge/libdbi/libdbi/libdbi-"
3830 version "/libdbi-" version ".tar.gz"))
3831 (sha256
3832 (base32
3833 "00s5ra7hdlq25iv23nwf4h1v3kmbiyzx0v9bhggjiii4lpf6ryys"))))
3834 (build-system gnu-build-system)
3835 (synopsis "Database independent abstraction layer in C")
3836 (description
3837 "This library implements a database independent abstraction layer in C,
3838similar to the DBI/DBD layer in Perl. Writing one generic set of code,
3839programmers can leverage the power of multiple databases and multiple
3840simultaneous database connections by using this framework.")
3841 (home-page "http://libdbi.sourceforge.net/")
3842 (license license:lgpl2.1+)))
df81de86
GLV
3843
3844(define-public libdbi-drivers
3845 (package
3846 (name "libdbi-drivers")
3847 (version "0.9.0")
3848 (source (origin
3849 (method url-fetch)
3850 (uri (string-append "mirror://sourceforge/libdbi-drivers/"
3851 "libdbi-drivers/libdbi-drivers-" version
3852 "/libdbi-drivers-" version ".tar.gz"))
3853 (sha256
3854 (base32
3855 "0m680h8cc4428xin4p733azysamzgzcmv4psjvraykrsaz6ymlj3"))))
3856 (build-system gnu-build-system)
3857 (native-inputs
9077cf68
MB
3858 `(;; For tests.
3859 ("inetutils" ,inetutils)
3860 ("glibc-locales" ,glibc-locales)
ca69163c 3861 ("mariadb" ,mariadb)))
df81de86
GLV
3862 (inputs
3863 `(("libdbi" ,libdbi)
9077cf68
MB
3864 ("mariadb:dev" ,mariadb "dev")
3865 ("mariadb:lib" ,mariadb "lib")
df81de86
GLV
3866 ("postgresql" ,postgresql)
3867 ("sqlite" ,sqlite)))
3868 (arguments
3869 `(#:configure-flags
3870 (let ((libdbi (assoc-ref %build-inputs "libdbi"))
9077cf68
MB
3871 (mysql:inc (assoc-ref %build-inputs "mariadb:dev"))
3872 (mysql:lib (assoc-ref %build-inputs "mariadb:lib"))
df81de86
GLV
3873 (postgresql (assoc-ref %build-inputs "postgresql"))
3874 (sqlite (assoc-ref %build-inputs "sqlite")))
3875 (list "--disable-docs"
3876 (string-append "--with-dbi-incdir=" libdbi "/include")
3877 (string-append "--with-dbi-libdir=" libdbi "/lib")
3878 "--with-mysql"
9077cf68
MB
3879 (string-append "--with-mysql-incdir=" mysql:inc "/include/mysql")
3880 (string-append "--with-mysql-libdir=" mysql:lib "/lib")
df81de86
GLV
3881 "--with-pgsql"
3882 (string-append "--with-pgsql-incdir=" postgresql "/include")
3883 (string-append "--with-pgsql-libdir=" postgresql "/lib")
3884 "--with-sqlite3"
3885 (string-append "--with-sqlite-incdir=" sqlite "/include")
3886 (string-append "--with-sqlite-libdir=" sqlite "/lib")))
3887 #:phases
3888 (modify-phases %standard-phases
3889 (add-after 'unpack 'fix-tests
3890 (lambda* (#:key inputs #:allow-other-keys)
3891 (substitute* "tests/test_mysql.sh"
3892 (("^MYMYSQLD=.*")
3893 (string-append "MYMYSQLD="
9077cf68 3894 (assoc-ref inputs "mariadb")
df81de86
GLV
3895 "/bin/mysqld")))
3896 #t))
3897 (add-after 'install 'remove-empty-directories
3898 (lambda* (#:key outputs #:allow-other-keys)
3899 (let ((var (string-append (assoc-ref outputs "out") "/var")))
3900 (delete-file-recursively var))
3901 #t)))))
3902 (synopsis "Database drivers for the libdbi framework")
3903 (description
3904 "The @code{libdbi-drivers} library provides the database specific drivers
3905for the @code{libdbi} framework.
3906
3907The drivers officially supported by @code{libdbi} are:
3908@itemize
3909@item MySQL,
3910@item PostgreSQL,
3911@item SQLite.
3912@end itemize")
3913 (home-page "http://libdbi-drivers.sourceforge.net/")
3914 (license license:lgpl2.1+)))
6d26ee3b
PN
3915
3916(define-public soci
3917 (package
3918 (name "soci")
d8fe4554 3919 (version "4.0.1")
6d26ee3b
PN
3920 (source (origin
3921 (method git-fetch)
3922 (uri (git-reference
3923 (url "https://github.com/SOCI/soci/")
3924 (commit version)))
3925 (file-name (git-file-name name version))
3926 (sha256
3927 (base32
d8fe4554 3928 "14x2gjblkgpflv75wl144cyjp1sis5rbxnr9r2gj3yw16v2av0bp"))))
6d26ee3b
PN
3929 (build-system cmake-build-system)
3930 (inputs
691c4185
TGR
3931 `(("firebird" ,firebird)
3932 ("postgresql" ,postgresql)
6d26ee3b
PN
3933 ("sqlite" ,sqlite)
3934 ("odbc" ,unixodbc)
3935 ("boost" ,boost)
997abda9 3936 ("mariadb:dev" ,mariadb "dev")))
6d26ee3b 3937 (arguments
d8fe4554
TGR
3938 `(#:configure-flags
3939 ;; C++11 (-DSOCI_CXX11) is OFF by default. hyperledger-iroha needs it.
28da3c19
TGR
3940 (list "-DCMAKE_CXX_STANDARD=17"
3941 "-DSOCI_LIBDIR=lib")
3942 #:tests? #f)) ; may require running database management systems
6d26ee3b
PN
3943 (synopsis "C++ Database Access Library")
3944 (description
3945 "SOCI is an abstraction layer for several database backends, including
3946PostreSQL, SQLite, ODBC and MySQL.")
3947 (home-page "http://soci.sourceforge.net/")
3948 (license license:boost1.0)))