jackhill/guix/guix.git
8 years agognu: isc-dhcp: Specify CPE name.
Ludovic Courtès [Thu, 26 May 2016 20:56:51 +0000 (22:56 +0200)]
gnu: isc-dhcp: Specify CPE name.

* gnu/packages/admin.scm (isc-dhcp)[properties]: New field.

8 years agognu: rush: Fix CVE-2013-6889.
Ludovic Courtès [Thu, 26 May 2016 20:51:12 +0000 (22:51 +0200)]
gnu: rush: Fix CVE-2013-6889.

* gnu/packages/patches/rush-CVE-2013-6889.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rush.scm (rush): Use it.

8 years agonls: Adjust to texlive.scm renaming.
Ludovic Courtès [Thu, 26 May 2016 14:59:29 +0000 (16:59 +0200)]
nls: Adjust to texlive.scm renaming.

* po/packages/POTFILES.in: Adjust to texlive.scm rename in
commit 8f9ac90182c022c69600f17ef9c1149e029bc301.

8 years agosubstitute: Internationalize the "Downloading" message.
Ludovic Courtès [Thu, 26 May 2016 10:15:04 +0000 (12:15 +0200)]
substitute: Internationalize the "Downloading" message.

* guix/scripts/substitute.scm (process-substitution): I18n "Downloading"
message.

8 years agognu: Add mitlm.
David Thompson [Tue, 24 May 2016 16:53:18 +0000 (12:53 -0400)]
gnu: Add mitlm.

* gnu/packages/speech.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

8 years agognu: Add autoconf-archive.
David Thompson [Tue, 24 May 2016 16:47:49 +0000 (12:47 -0400)]
gnu: Add autoconf-archive.

* gnu/packages/autotools.scm (autoconf-archive): New variable.

8 years agodoc: Fix typo.
Mathieu Lirzin [Thu, 26 May 2016 12:22:26 +0000 (14:22 +0200)]
doc: Fix typo.

* doc/guix.texi (Derivations): Add 's' to "contain".

8 years agognu: hurd: Add hurd-core-headers package.
Manolis Ragkousis [Tue, 24 May 2016 17:42:59 +0000 (20:42 +0300)]
gnu: hurd: Add hurd-core-headers package.

* gnu/packages/hurd.scm (hurd-core-headers): New variable.

8 years agognu: Add texmaker.
Roel Janssen [Tue, 24 May 2016 19:23:31 +0000 (21:23 +0200)]
gnu: Add texmaker.

* gnu/packages/tex.scm (texmaker): New variable.

8 years agognu: Rename texlive module to tex.
Roel Janssen [Tue, 24 May 2016 19:18:53 +0000 (21:18 +0200)]
gnu: Rename texlive module to tex.

* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm.
* gnu/packages/texlive.scm: Rename file to tex.scm.
* gnu/packages/tex.scm: Renamed from texlive.scm.
* gnu/packages/algebra.scm: Adjust accordingly.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/gettext.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/lisp.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.

8 years agognu: aria2: Update to 1.23.0.
Efraim Flashner [Thu, 26 May 2016 05:59:22 +0000 (08:59 +0300)]
gnu: aria2: Update to 1.23.0.

* gnu/packages/bittorrent.scm (aria2): Update to 1.23.0.
[inputs]: Move cppunit ...
[native-inputs]: ... to here.
[home-page]: Update to new Github website.

8 years agografts: Create only one grafted variant of each derivation.
Ludovic Courtès [Wed, 25 May 2016 13:22:36 +0000 (15:22 +0200)]
grafts: Create only one grafted variant of each derivation.

Currently, with several grafts applicable to Inkscape, this makes:

  guix gc -R $(guix build inkscape -d) | wc -l

go from 2376 to 2266 (4.6%).

* guix/grafts.scm (cumulative-grafts): Pass 'graft-derivation/shallow'
the subset of GRAFTS that applies to DRV.

8 years agognu: randomjungle: Add gfortran:lib to native-inputs.
Efraim Flashner [Wed, 25 May 2016 18:48:22 +0000 (21:48 +0300)]
gnu: randomjungle: Add gfortran:lib to native-inputs.

* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Add
gfortran:lib.

8 years agognu: enlightenment: Update to 0.20.8.
Efraim Flashner [Wed, 25 May 2016 15:19:41 +0000 (18:19 +0300)]
gnu: enlightenment: Update to 0.20.8.

* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.8.

8 years agognu: elementary: Update to 1.17.1.
Efraim Flashner [Wed, 25 May 2016 15:18:34 +0000 (18:18 +0300)]
gnu: elementary: Update to 1.17.1.

* gnu/packages/enlightenment.scm (elementary): Update to 1.17.1.

8 years agognu: efl: Update to 1.17.1.
Efraim Flashner [Wed, 25 May 2016 15:17:34 +0000 (18:17 +0300)]
gnu: efl: Update to 1.17.1.

* gnu/packages/enlightenment.scm (efl): Update to 1.17.1.

8 years agognu: python-llfuse: Update to 1.1.
Leo Famulari [Tue, 24 May 2016 17:13:05 +0000 (13:13 -0400)]
gnu: python-llfuse: Update to 1.1.

* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.1.

8 years agognu: fuse: Update to 2.9.6.
Leo Famulari [Tue, 24 May 2016 17:12:35 +0000 (13:12 -0400)]
gnu: fuse: Update to 2.9.6.

* gnu/packages/linux.scm (fuse): Update to 2.9.6.
[home-page]: Update home-page URL.

8 years agognu: dnsmasq: Update to 2.76 [fixes CVE-2015-3294].
Leo Famulari [Wed, 25 May 2016 06:23:14 +0000 (02:23 -0400)]
gnu: dnsmasq: Update to 2.76 [fixes CVE-2015-3294].

* gnu/packages/dns.scm (dnsmasq): Update to 2.76.

8 years agognu: ruby-mime-types: Update to 3.1.
Ben Woodcroft [Wed, 25 May 2016 11:42:05 +0000 (21:42 +1000)]
gnu: ruby-mime-types: Update to 3.1.

* gnu/packages/ruby.scm (ruby-mime-types): Update to 3.1.
[native-inputs]: Add 'ruby-minitest-hooks'.

8 years agognu: Add ruby-minitest-hooks.
Ben Woodcroft [Wed, 25 May 2016 12:15:13 +0000 (22:15 +1000)]
gnu: Add ruby-minitest-hooks.

* gnu/packages/ruby.scm (ruby-minitest-hooks): New variable.

8 years agognu: Add ruby-sequel.
Ben Woodcroft [Wed, 25 May 2016 12:08:36 +0000 (22:08 +1000)]
gnu: Add ruby-sequel.

* gnu/packages/ruby.scm (ruby-sequel): New variable.

8 years agognu: ruby-nokogumbo: Update to 1.4.7-1.
Ben Woodcroft [Sat, 21 May 2016 13:31:56 +0000 (23:31 +1000)]
gnu: ruby-nokogumbo: Update to 1.4.7-1.

* gnu/packages/ruby.scm (ruby-nokogumbo): Update to 1.4.7-1.

8 years agognu: ruby-mini-portile-2: Update to 2.1.0.
Ben Woodcroft [Sat, 21 May 2016 13:05:18 +0000 (23:05 +1000)]
gnu: ruby-mini-portile-2: Update to 2.1.0.

* gnu/packages/ruby.scm (ruby-mini-portile-2): Update to 2.1.0.

8 years agognu: ruby-mime-types-data: Update to 3.2016.0221.
Ben Woodcroft [Sat, 21 May 2016 13:03:47 +0000 (23:03 +1000)]
gnu: ruby-mime-types-data: Update to 3.2016.0221.

* gnu/packages/ruby.scm (ruby-mime-types-data): Update to 3.2016.0221.

8 years agognu: ruby-shoulda-matchers: Update to 3.1.1.
Ben Woodcroft [Sat, 21 May 2016 13:01:37 +0000 (23:01 +1000)]
gnu: ruby-shoulda-matchers: Update to 3.1.1.

* gnu/packages/ruby.scm (ruby-shoulda-matchers): Update to 3.1.1.
[arguments]: Remove 'fix-import' phase.

8 years agognu: ruby-domain-name: Update to 0.5.20160310.
Ben Woodcroft [Sat, 21 May 2016 12:57:07 +0000 (22:57 +1000)]
gnu: ruby-domain-name: Update to 0.5.20160310.

* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20160310.

8 years agognu: ruby-nokogiri: Update to 1.6.7.2.
Ben Woodcroft [Sat, 21 May 2016 22:49:41 +0000 (08:49 +1000)]
gnu: ruby-nokogiri: Update to 1.6.7.2.

* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.6.7.2.
[arguments]: Relax 'mini_portile2' dependency.

8 years agoguix: ruby-build-system: Extract gemspec during 'extract-gemspec'.
Ben Woodcroft [Sat, 21 May 2016 22:46:39 +0000 (08:46 +1000)]
guix: ruby-build-system: Extract gemspec during 'extract-gemspec'.

* guix/build/ruby-build-system.scm (build): Move extraction from here ...
(extract-gemspec): ... to here.  New variable.
(first-gemspec): New variable.
(%standard-phases): Add 'extract-gemspec' phase.

8 years agognu: linux-libre: Update to 4.6.
Mark H Weaver [Tue, 24 May 2016 05:28:57 +0000 (01:28 -0400)]
gnu: linux-libre: Update to 4.6.

* gnu/packages/linux.scm (linux-libre): Update to 4.6.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: New files.
* gnu/packages/linux-libre-4.5-x86_64.conf,
gnu/packages/linux-libre-4.5-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.

8 years agognu: python-libxml2: Drop replacement from inherited libxml2.
Mark H Weaver [Wed, 25 May 2016 08:45:18 +0000 (04:45 -0400)]
gnu: python-libxml2: Drop replacement from inherited libxml2.

This is a followup to commit 493e9a5a8f613764cfa396c33ee6cb381b0dbbef.

* gnu/packages/xml.scm (python-libxml2)[replacement]: Set to #f, overriding
inherited value.

8 years agognu: freeipmi: Update to 1.5.2.
Efraim Flashner [Wed, 25 May 2016 06:13:13 +0000 (09:13 +0300)]
gnu: freeipmi: Update to 1.5.2.

* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.2.

8 years agognu: linux-libre-4.1: Update to 4.1.25.
Mark H Weaver [Wed, 25 May 2016 04:26:40 +0000 (00:26 -0400)]
gnu: linux-libre-4.1: Update to 4.1.25.

* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.25.

8 years agognu: webkitgtk: Update to 2.12.3 [fixes CVE-2016-{1856,1857}].
Mark H Weaver [Wed, 25 May 2016 04:14:32 +0000 (00:14 -0400)]
gnu: webkitgtk: Update to 2.12.3 [fixes CVE-2016-{1856,1857}].

* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.3.

8 years agograft: Fail when one of the threads raises an exception.
Ludovic Courtès [Tue, 24 May 2016 21:49:26 +0000 (23:49 +0200)]
graft: Fail when one of the threads raises an exception.

Fixes <http://bugs.gnu.org/23581>.

* guix/build/graft.scm (exit-on-exception): New procedure.
(rewrite-directory): Use it to wrap REWRITE-LEAF.

8 years agosize: Pass 'requisites' a list of items.
Ludovic Courtès [Tue, 24 May 2016 21:41:30 +0000 (23:41 +0200)]
size: Pass 'requisites' a list of items.

* guix/scripts/size.scm (substitutable-requisites): Change 'item' to
'items' and adjust.
(requisites*): Likewise.
(mappend-map): Remove.
(store-profile): Adjust accordingly.

8 years agostore: 'requisites' now takes a list of store items.
Ludovic Courtès [Tue, 24 May 2016 21:27:07 +0000 (23:27 +0200)]
store: 'requisites' now takes a list of store items.

* guix/store.scm (fold-path): Change 'path' to 'paths' and adjust body
accordingly.
(requisites): Likewise.
* guix/scripts/environment.scm (inputs->requisites): Adjust
user accordingly.
* guix/scripts/size.scm (requisites*): Likewise.
* guix/scripts/gc.scm (guix-gc): Likewise.
* tests/store.scm ("requisites"): Likewise.

8 years agosize: Accept several arguments.
Ludovic Courtès [Tue, 24 May 2016 19:37:13 +0000 (21:37 +0200)]
size: Accept several arguments.

* guix/scripts/size.scm (display-profile): Display WHOLE at then end.
(guix-size): Accept several FILES.
* doc/guix.texi (Invoking guix size): Add example with several items.

8 years agosize: 'store-profile' takes a list of store items.
Ludovic Courtès [Tue, 24 May 2016 18:51:49 +0000 (20:51 +0200)]
size: 'store-profile' takes a list of store items.

* guix/scripts/size.scm (mappend-map): New procedure.
(store-profile): Change 'item' to 'items' and adjust code accordingly.
(guix-size): Update caller.
* tests/size.scm ("store-profile"): Likewise.

8 years agotests: Do not run 'cve' checker in 'tests/guix-lint.sh'.
Ludovic Courtès [Tue, 24 May 2016 12:45:18 +0000 (14:45 +0200)]
tests: Do not run 'cve' checker in 'tests/guix-lint.sh'.

Reported by Malcolm, Cook <MEC@stowers.org>.

* tests/guix-lint.sh: Pass '-c synopsis,description' in first invocation
so we don't run the 'cve' checker.

8 years agognu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705.
Ludovic Courtès [Tue, 24 May 2016 12:11:52 +0000 (14:11 +0200)]
gnu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705.

* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.

8 years agobuild: Use "%D%" in Makefile fragments.
Mathieu Lirzin [Tue, 24 May 2016 11:06:21 +0000 (13:06 +0200)]
build: Use "%D%" in Makefile fragments.

* doc/local.mk: Use "%D%" for the directory of the fragment relative to
the base 'Makefile.am'.
* emacs/local.mk: Likewise.
* gnu/local.mk: Likewise.
* nix/local.mk: Likewise.

8 years agoui: Let users report translation bugs.
Mathieu Lirzin [Mon, 16 May 2016 15:55:38 +0000 (17:55 +0200)]
ui: Let users report translation bugs.

* guix/ui.scm (show-bug-report-information): Add a comment for
translators.

8 years agognu: Add emacs-clojure-mode.
humanitiesNerd [Wed, 18 May 2016 13:41:47 +0000 (15:41 +0200)]
gnu: Add emacs-clojure-mode.

* gnu/packages/emacs.scm (emacs-clojure-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
8 years agognu: Use 'emacs-minimal' instead of 'emacs-no-x'.
Alex Kost [Wed, 11 May 2016 22:58:59 +0000 (01:58 +0300)]
gnu: Use 'emacs-minimal' instead of 'emacs-no-x'.

* gnu/packages/code.scm (cflow)[native-inputs]: Use 'emacs-minimal'
  instead of 'emacs-no-x'.
* gnu/packages/databases.scm (recutils): Likewise.
* gnu/packages/finance.scm (ledger): Likewise
* gnu/packages/idutils.scm (idutils): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/ocaml.scm (proof-general): Likewise.
* gnu/packages/package-management.scm (guix-0.10.0): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/scheme.scm (scmutils): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.
* gnu/packages/emacs.scm (geiser): Likewise.
(paredit): Likewise.
(git-modes): Likewise.
(magit): Likewise.
(magit-svn): Likewise.
(haskell-mode): Likewise.
(let-alist): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
(emms): Likewise.
(bbdb): Likewise.
(emacs-mmm-mode): Likewise.
(emacs-pdf-tools): Likewise.
(emacs-popup)[native-inputs]: Remove as it is not needed for
emacs-build-system.
(emacs-rfcview): Likewise.
(emacs-ffap-rfc-space): Likewise.

8 years agognu: Move emacs for building from inputs to native-inputs.
Alex Kost [Wed, 11 May 2016 22:53:02 +0000 (01:53 +0300)]
gnu: Move emacs for building from inputs to native-inputs.

* gnu/packages/emacs.scm (geiser): Move "emacs" from inputs to native-inputs.
(paredit): Likewise.
(haskell-mode): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.

8 years agobuild-system/emacs: Use 'emacs-minimal' by default.
Alex Kost [Wed, 11 May 2016 21:41:12 +0000 (00:41 +0300)]
build-system/emacs: Use 'emacs-minimal' by default.

* guix/build-system/emacs.scm (default-emacs): Use 'emacs-minimal'.
* gnu/packages/emacs.scm (emacs-auctex): Use 'emacs'.

8 years agognu: Add emacs-minimal.
Alex Kost [Wed, 11 May 2016 20:25:29 +0000 (23:25 +0300)]
gnu: Add emacs-minimal.

* gnu/packages/emacs.scm (emacs-minimal): New variable.

8 years agognu: emacs: Remove *.elc and autoloads from the tarball.
Alex Kost [Thu, 19 May 2016 08:01:40 +0000 (11:01 +0300)]
gnu: emacs: Remove *.elc and autoloads from the tarball.

* gnu/packages/emacs.scm (emacs)[source]: Add 'snippet' to remove
  compiled and generated elisp files.

8 years agognu: enblend-enfuse: Update to 4.2.
Efraim Flashner [Tue, 24 May 2016 05:47:59 +0000 (08:47 +0300)]
gnu: enblend-enfuse: Update to 4.2.

* gnu/packages/photo.scm (enblend-enfuse): Update to 4.2.
[native-inputs]: Add help2man, texlive-minimal.

8 years agognu: grub: Re-enable test.
Leo Famulari [Fri, 4 Dec 2015 17:00:32 +0000 (12:00 -0500)]
gnu: grub: Re-enable test.

* gnu/packages/grub.scm (grub)[arguments]: Re-enable test.

8 years agograph: Add 'node-reachable-count'.
Ludovic Courtès [Mon, 23 May 2016 21:03:23 +0000 (23:03 +0200)]
graph: Add 'node-reachable-count'.

* guix/graph.scm (node-reachable-count): New procedure.
* tests/graph.scm ("node-reachable-count"): New test.

8 years agograph: Expose 'traverse/depth-first'.
Ludovic Courtès [Mon, 23 May 2016 20:31:59 +0000 (22:31 +0200)]
graph: Expose 'traverse/depth-first'.

* guix/graph.scm (traverse/depth-first): New procedure, based on code
formerly in 'node-transitive-edges'.
(node-transitive-edges): Rewrite in terms of it.

8 years agorefresh: Make 'list-dependents' a monadic procedure.
Ludovic Courtès [Mon, 23 May 2016 20:24:02 +0000 (22:24 +0200)]
refresh: Make 'list-dependents' a monadic procedure.

* guix/scripts/refresh.scm (list-dependents): Remove use of 'with-store'
and 'run-with-store'.
(guix-refresh): Wrap body in with-store/run-with-store.

8 years agognu: vdirsyncer: Update to 0.11.0.
Leo Famulari [Mon, 23 May 2016 17:21:49 +0000 (13:21 -0400)]
gnu: vdirsyncer: Update to 0.11.0.

* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.0.

8 years agognu: git: Update to 2.8.3.
Leo Famulari [Fri, 6 May 2016 20:34:11 +0000 (16:34 -0400)]
gnu: git: Update to 2.8.3.

* gnu/packages/version-control.scm (git): Update to 2.8.3.
(git-manpages)[source]: Update hash.

8 years agognu: Add r-zoo.
Roel Janssen [Mon, 23 May 2016 09:09:13 +0000 (11:09 +0200)]
gnu: Add r-zoo.

* gnu/packages/statistics.scm (r-zoo): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
8 years agognu: borg: Update to 1.0.3.
Leo Famulari [Mon, 23 May 2016 06:55:54 +0000 (02:55 -0400)]
gnu: borg: Update to 1.0.3.

* gnu/packages/backup.scm (borg): Update to 1.0.3.
[source]: Remove pypi-uri.

8 years agounion: Compare inode numbers in 'file=?'.
Ludovic Courtès [Mon, 23 May 2016 16:02:04 +0000 (18:02 +0200)]
union: Compare inode numbers in 'file=?'.

* guix/build/union.scm (file=?): Compare the inode of ST1 and ST2.

8 years agocve: Remove now unnecessary HTTP caching.
Ludovic Courtès [Mon, 23 May 2016 15:46:59 +0000 (17:46 +0200)]
cve: Remove now unnecessary HTTP caching.

* guix/cve.scm (call-with-cve-port): Use 'http-fetch' instead of
'http-fetch/cached'.

8 years agocve: Keep a summarized sexp in cache instead of the full XML.
Ludovic Courtès [Mon, 23 May 2016 15:42:32 +0000 (17:42 +0200)]
cve: Keep a summarized sexp in cache instead of the full XML.

This avoids ~20s of XML parsing when running 'guix lint -c cve'.

* guix/cve.scm (vulnerability->sexp, sexp->vulnerability)
(fetch-vulnerabilities): New procedures.
(current-vulnerabilities): Use 'fetch-vulnerabilities'.

8 years agognu: Add poppler-qt5.
Roel Janssen [Sun, 22 May 2016 23:47:11 +0000 (01:47 +0200)]
gnu: Add poppler-qt5.

* gnu/packages/pdf.scm (poppler-qt5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
8 years agognu: Add slurm-drmaa.
Ricardo Wurmus [Thu, 12 May 2016 15:09:41 +0000 (17:09 +0200)]
gnu: Add slurm-drmaa.

* gnu/packages/parallel.scm (slurm-drmaa): New variable.

8 years agognu: Add ParDRe.
Ricardo Wurmus [Fri, 20 May 2016 14:09:59 +0000 (16:09 +0200)]
gnu: Add ParDRe.

* gnu/packages/bioinformatics.scm (pardre): New variable.

8 years agognu: gnu-pw-mgr: Update to 2.0.
Efraim Flashner [Sun, 22 May 2016 13:58:21 +0000 (16:58 +0300)]
gnu: gnu-pw-mgr: Update to 2.0.

* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.

8 years agognu: imagemagick: Update to 6.9.4-4.
Leo Famulari [Thu, 19 May 2016 03:16:51 +0000 (23:16 -0400)]
gnu: imagemagick: Update to 6.9.4-4.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.

8 years agognu: Add python2-rope.
Lukas Gradl [Sat, 21 May 2016 23:19:42 +0000 (18:19 -0500)]
gnu: Add python2-rope.

* gnu/packages/python.scm (python2-rope): New variable.

8 years agognu: Add gnome-calendar.
Kei Yamashita [Sun, 15 May 2016 01:27:08 +0000 (21:27 -0400)]
gnu: Add gnome-calendar.

* gnu/packages/gnome.scm (gnome-calendar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
8 years agognu: Add envstore.
Matthew Jordan [Thu, 19 May 2016 18:10:40 +0000 (14:10 -0400)]
gnu: Add envstore.

* gnu/package/shellutils.scm: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
8 years agognu: Add sicp.
Jan Nieuwenhuizen [Thu, 19 May 2016 21:50:09 +0000 (23:50 +0200)]
gnu: Add sicp.

* gnu/packages/scheme.scm (sicp): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
8 years agognu: Add dia.
Roel Janssen [Thu, 19 May 2016 08:26:45 +0000 (10:26 +0200)]
gnu: Add dia.

* gnu/packages/gnome.scm (dia): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
8 years agobuild: Fix 'AM_V_at' typo.
Mathieu Lirzin [Thu, 12 May 2016 21:15:37 +0000 (23:15 +0200)]
build: Fix 'AM_V_at' typo.

* Makefile.am (hydra-jobs.scm): Fix 'AM_V_at' typo.

8 years agografts: Rename files whose name matches a graft.
Ludovic Courtès [Fri, 20 May 2016 20:14:46 +0000 (22:14 +0200)]
grafts: Rename files whose name matches a graft.

Fixes <http://bugs.gnu.org/23132>.
Reported by Mark H Weaver <mhw@netris.org>.

* guix/build/graft.scm (rename-matching-files): New procedure.
(rewrite-directory): Use it.
* tests/grafts.scm ("graft-derivation, renaming"): New test.

8 years agografts: Preserve empty directories when grafting.
Ludovic Courtès [Fri, 20 May 2016 20:11:56 +0000 (22:11 +0200)]
grafts: Preserve empty directories when grafting.

* guix/build/graft.scm (rewrite-directory)[rewrite-leaf]: Add case for
'directory.
Pass #:directories? #t to 'find-files'.

8 years agosubstitute: Gracefully handle invalid store file names.
Ludovic Courtès [Fri, 20 May 2016 15:18:58 +0000 (17:18 +0200)]
substitute: Gracefully handle invalid store file names.

Before, something like:

  echo have /gnu/foo | ./test-env guix substitute --query

would lead to an ugly backtrace.

* guix/scripts/substitute.scm (narinfo-cache-file): Call 'leave' when
'store-hash-part' returns #f.

8 years agograph: Allow store file names for 'derivation' and 'references' graphs.
Ludovic Courtès [Fri, 20 May 2016 15:07:23 +0000 (17:07 +0200)]
graph: Allow store file names for 'derivation' and 'references' graphs.

* guix/scripts/graph.scm (%derivation-node-type)[convert]: Add
'derivation-path?' and catch-all clauses.
(%reference-node-type)[convert]: Add 'store-path?' and catch-all
clauses.
(assert-package, nodes-from-package): New procedures.
(%package-node-type, %bag-node-type,%bag-with-origins-node-type)
(%bag-emerged-node-type): Add 'convert' field
(guix-graph): Rename 'packages' to 'items' and
allow 'store-path?' arguments.
* guix/graph.scm (<node-type>)[convert]: Adjust comment.
* doc/guix.texi (Invoking guix graph): Document it.

8 years agoderivations: 'derivation' sorts items in the resulting object.
Ludovic Courtès [Thu, 19 May 2016 21:27:48 +0000 (23:27 +0200)]
derivations: 'derivation' sorts items in the resulting object.

* guix/derivations.scm (derivation-input<?): New procedure.
(write-derivation)[coalesce-duplicate-inputs]: Remove.
Remove calls to 'sort'.
(coalesce-duplicate-inputs): New procedure.
(derivation-hash): Sort INPUTS and use 'coalesce-duplicate-inputs'.
(derivation)[input->derivation-input]
[coalesce-duplicate-inputs]: New procedures.
Sort OUTPUTS, INPUTS, and ENV-VARS.
* tests/derivations.scm ("read-derivation vs. derivation"): New test.

8 years agograph: Use absolute file name canonicalization.
Ludovic Courtès [Thu, 19 May 2016 21:24:50 +0000 (23:24 +0200)]
graph: Use absolute file name canonicalization.

* guix/scripts/graph.scm (guix-graph): Wrap in 'with-fluids'.

8 years agognu: linux-libre: Update to 4.5.5.
Mark H Weaver [Fri, 20 May 2016 22:17:12 +0000 (18:17 -0400)]
gnu: linux-libre: Update to 4.5.5.

* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.

8 years agognu: linux-libre-4.4: Update to 4.4.11.
Mark H Weaver [Fri, 20 May 2016 22:15:51 +0000 (18:15 -0400)]
gnu: linux-libre-4.4: Update to 4.4.11.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.

8 years agoant-build-system: Add unpack phase.
Ricardo Wurmus [Tue, 10 May 2016 13:50:28 +0000 (15:50 +0200)]
ant-build-system: Add unpack phase.

* guix/build/ant-build-system.scm (unpack): New procedure.
(%standard-phases): Use it.

8 years agognu: Add default gcc-objc++.
Ricardo Wurmus [Mon, 16 May 2016 18:12:08 +0000 (20:12 +0200)]
gnu: Add default gcc-objc++.

* gnu/packages/gcc.scm (gcc-objc++): New variable.

8 years agognu: Add gcc-objc++-4.9.
Ricardo Wurmus [Mon, 16 May 2016 18:11:42 +0000 (20:11 +0200)]
gnu: Add gcc-objc++-4.9.

* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.

8 years agognu: Add default gcc-objc.
Ricardo Wurmus [Mon, 16 May 2016 18:11:19 +0000 (20:11 +0200)]
gnu: Add default gcc-objc.

* gnu/packages/gcc.scm (gcc-objc): New variable.

8 years agognu: Add gcc-objc-4.9.
Ricardo Wurmus [Mon, 16 May 2016 18:10:55 +0000 (20:10 +0200)]
gnu: Add gcc-objc-4.9.

* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.

8 years agognu: r-rcpparmadillo: Update to 0.6.700.6.0.
Ricardo Wurmus [Fri, 20 May 2016 13:09:36 +0000 (15:09 +0200)]
gnu: r-rcpparmadillo: Update to 0.6.700.6.0.

* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.

8 years agognu: armadillo: Update to 6.700.7.
Ricardo Wurmus [Fri, 20 May 2016 13:08:53 +0000 (15:08 +0200)]
gnu: armadillo: Update to 6.700.7.

* gnu/packages/maths.scm (armadillo): Update to 6.700.7.

8 years agognu: r-genomation: Update to 1.4.2.
Ricardo Wurmus [Fri, 20 May 2016 12:58:57 +0000 (14:58 +0200)]
gnu: r-genomation: Update to 1.4.2.

* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.

8 years agognu: r-jsonlite: Update to 0.9.20.
Ricardo Wurmus [Fri, 20 May 2016 12:57:25 +0000 (14:57 +0200)]
gnu: r-jsonlite: Update to 0.9.20.

* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.

8 years agognu: r-plotly: Update to 3.6.0.
Ricardo Wurmus [Fri, 20 May 2016 12:56:50 +0000 (14:56 +0200)]
gnu: r-plotly: Update to 3.6.0.

* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.

8 years agognu: r-matrixstats: Update to 0.50.2.
Ricardo Wurmus [Fri, 20 May 2016 12:56:16 +0000 (14:56 +0200)]
gnu: r-matrixstats: Update to 0.50.2.

* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.

8 years agognu: r-r-rsp: Update to 0.30.0.
Ricardo Wurmus [Fri, 20 May 2016 12:54:25 +0000 (14:54 +0200)]
gnu: r-r-rsp: Update to 0.30.0.

* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.

8 years agognu: r-rmarkdown: Update to 0.9.6.
Ricardo Wurmus [Fri, 20 May 2016 12:53:44 +0000 (14:53 +0200)]
gnu: r-rmarkdown: Update to 0.9.6.

* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.

8 years agognu: r-plotrix: Update to 3.6-2.
Ricardo Wurmus [Fri, 20 May 2016 12:52:32 +0000 (14:52 +0200)]
gnu: r-plotrix: Update to 3.6-2.

* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.

8 years agognu: r-devtools: Update to 1.11.1.
Ricardo Wurmus [Fri, 20 May 2016 12:51:58 +0000 (14:51 +0200)]
gnu: r-devtools: Update to 1.11.1.

* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.

8 years agognu: r-git2r: Update to 0.15.0.
Ricardo Wurmus [Fri, 20 May 2016 12:51:26 +0000 (14:51 +0200)]
gnu: r-git2r: Update to 0.15.0.

* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.

8 years agognu: r-openssl: Update to 0.9.3.
Ricardo Wurmus [Fri, 20 May 2016 12:50:54 +0000 (14:50 +0200)]
gnu: r-openssl: Update to 0.9.3.

* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.

8 years agognu: r-testthat: Update to 1.0.2.
Ricardo Wurmus [Fri, 20 May 2016 12:49:54 +0000 (14:49 +0200)]
gnu: r-testthat: Update to 1.0.2.

* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.

8 years agognu: r-knitr: Update to 1.13.
Ricardo Wurmus [Fri, 20 May 2016 12:49:07 +0000 (14:49 +0200)]
gnu: r-knitr: Update to 1.13.

* gnu/packages/statistics.scm (r-knitr): Update to 1.13.

8 years agognu: r-highr: Update to 0.6.
Ricardo Wurmus [Fri, 20 May 2016 12:48:35 +0000 (14:48 +0200)]
gnu: r-highr: Update to 0.6.

* gnu/packages/statistics.scm (r-highr): Update to 0.6.