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[jackhill/guix/guix.git] / gnu / packages / bioinformatics.scm

2020-04-17	Ricardo Wurmus	gnu: python-pygenometracks: Update to 3.3.	blob \| commitdiff \| raw
2020-04-17	Ricardo Wurmus	gnu: Add python-hicmatrix.	blob \| commitdiff \| raw \| diff to current
2020-04-17	Ricardo Wurmus	gnu: python-cooler: Update to 0.8.7.	blob \| commitdiff \| raw \| diff to current
2020-04-17	Ricardo Wurmus	gnu: python-pybigwig: Update to 0.3.17.	blob \| commitdiff \| raw \| diff to current
2020-04-15	Ludovic Courtès	Merge branch 'version-1.1.0'	blob \| commitdiff \| raw \| diff to current
2020-04-14	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.12.3.	blob \| commitdiff \| raw \| diff to current
2020-04-14	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.24.4.	blob \| commitdiff \| raw \| diff to current
2020-04-14	Ricardo Wurmus	gnu: pigx-chipseq: Update to 0.0.42.	blob \| commitdiff \| raw \| diff to current
2020-04-12	Vagrant Cascadian	gnu: r-bamsignals: Fix grammar of "allows to efficientl...	blob \| commitdiff \| raw \| diff to current
2020-04-12	Vagrant Cascadian	gnu: r-qtl: Fix grammar "allows to estimate" to "estima...	blob \| commitdiff \| raw \| diff to current
2020-04-09	Marius Bakke	gnu: minimap2: Fix cond expression for Guile 3 compatib...	blob \| commitdiff \| raw \| diff to current
2020-04-05	Jakub Kądziołka	gnu: python-intervaltree: Update to 3.0.2.	blob \| commitdiff \| raw \| diff to current
2020-04-01	Ricardo Wurmus	gnu: r-biomart: Update to 2.42.1.	blob \| commitdiff \| raw \| diff to current
2020-04-01	Ricardo Wurmus	gnu: r-genomeinfodb: Update to 1.22.1.	blob \| commitdiff \| raw \| diff to current
2020-03-26	Roel Janssen	gnu: Update sambamba to 0.7.1.	blob \| commitdiff \| raw \| diff to current
2020-03-24	Ricardo Wurmus	gnu: r-tximport: Update to 1.14.2.	blob \| commitdiff \| raw \| diff to current
2020-03-22	Efraim Flashner	gnu: edirect: Install more programs.	blob \| commitdiff \| raw \| diff to current
2020-03-22	Efraim Flashner	gnu: Add edirect-go-programs.	blob \| commitdiff \| raw \| diff to current
2020-03-17	Ricardo Wurmus	gnu: pigx-scrnaseq: Update to 1.1.4.	blob \| commitdiff \| raw \| diff to current
2020-03-16	Ricardo Wurmus	gnu: star: Update to 2.7.3a.	blob \| commitdiff \| raw \| diff to current
2020-03-14	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-03-12	Efraim Flashner	gnu: edirect: Update to 13.3.20200128.	blob \| commitdiff \| raw \| diff to current
2020-03-12	Ricardo Wurmus	gnu: r-qtl: Update to 1.46-2.	blob \| commitdiff \| raw \| diff to current
2020-03-11	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-03-11	Efraim Flashner	gnu: python-pybedtools: Update to 0.8.1.	blob \| commitdiff \| raw \| diff to current
2020-03-11	Efraim Flashner	gnu: python-pyfaidx: Update to 0.5.8.	blob \| commitdiff \| raw \| diff to current
2020-03-11	Efraim Flashner	gnu: Add python2-pyfaidx.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Björn Höfling	gnu: java-forester-1.005: Update source URI.	blob \| commitdiff \| raw \| diff to current
2020-03-09	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-03-09	Roel Janssen	gnu: Fix build of python-velocyto.	blob \| commitdiff \| raw \| diff to current
2020-03-08	Ricardo Wurmus	gnu: ngless: Update to 1.1.0.	blob \| commitdiff \| raw \| diff to current
2020-03-08	Ricardo Wurmus	gnu: taxtastic: Update to 0.8.11.	blob \| commitdiff \| raw \| diff to current
2020-03-07	Ricardo Wurmus	gnu: r-methylkit: Add r-knitr.	blob \| commitdiff \| raw \| diff to current
2020-03-07	Ricardo Wurmus	gnu: r-vsn: Add r-knitr.	blob \| commitdiff \| raw \| diff to current
2020-03-06	Ricardo Wurmus	gnu: python-scanpy: Update to 1.4.5.1.	blob \| commitdiff \| raw \| diff to current
2020-03-04	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-03-03	Ricardo Wurmus	gnu: gess: Use WRAP-SCRIPT.	blob \| commitdiff \| raw \| diff to current
2020-03-03	Ricardo Wurmus	gnu: gess: Override PYTHONPATH.	blob \| commitdiff \| raw \| diff to current
2020-03-02	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-03-02	Ricardo Wurmus	gnu: r-seqminer: Update to 8.0.	blob \| commitdiff \| raw \| diff to current
2020-03-01	Ricardo Wurmus	gnu: r-hdf5array: Update to 1.14.3.	blob \| commitdiff \| raw \| diff to current
2020-03-01	Ricardo Wurmus	gnu: r-rsamtools: Update to 2.2.3.	blob \| commitdiff \| raw \| diff to current
2020-03-01	Ricardo Wurmus	gnu: r-edger: Update to 3.28.1.	blob \| commitdiff \| raw \| diff to current
2020-03-01	Ricardo Wurmus	gnu: r-seurat: Update to 3.1.4.	blob \| commitdiff \| raw \| diff to current
2020-02-28	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-02-27	Ricardo Wurmus	gnu: infernal: Update to 1.1.3.	blob \| commitdiff \| raw \| diff to current
2020-02-27	Ricardo Wurmus	gnu: vcftools: Update to 0.1.16.	blob \| commitdiff \| raw \| diff to current
2020-02-27	Ricardo Wurmus	gnu: bedtools: Update to 2.29.2.	blob \| commitdiff \| raw \| diff to current
2020-02-27	Ricardo Wurmus	gnu: rseqc: Update to 3.0.1.	blob \| commitdiff \| raw \| diff to current
2020-02-26	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-02-26	Ricardo Wurmus	gnu: proteinortho: Update to 6.0.14.	blob \| commitdiff \| raw \| diff to current
2020-02-26	Ricardo Wurmus	gnu: diamond: Update to 0.9.30.	blob \| commitdiff \| raw \| diff to current
2020-02-26	Ricardo Wurmus	gnu: crossmap: Update to 0.3.8.	blob \| commitdiff \| raw \| diff to current
2020-02-26	Ricardo Wurmus	gnu: macs: Update to 2.2.6.	blob \| commitdiff \| raw \| diff to current
2020-02-26	Ricardo Wurmus	gnu: Remove python-loompy-for-pigx-scrnaseq.	blob \| commitdiff \| raw \| diff to current
2020-02-26	Ricardo Wurmus	gnu: pigx-scrnaseq: Update to 1.1.3.	blob \| commitdiff \| raw \| diff to current
2020-02-25	Ricardo Wurmus	gnu: jamm: Update to 1.0.7.6.	blob \| commitdiff \| raw \| diff to current
2020-02-24	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-scran: Update to 1.14.6.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-hdf5array: Update to 1.14.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-gviz: Update to 1.30.3.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-rhtslib: Update to 1.18.1.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.38.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-rsamtools: Update to 2.2.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-limma: Update to 3.42.2.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-shortread: Update to 1.44.3.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-seurat: Update to 3.1.3.	blob \| commitdiff \| raw \| diff to current
2020-02-19	Ricardo Wurmus	gnu: r-qtl: Update to 1.45-11.	blob \| commitdiff \| raw \| diff to current
2020-02-18	Efraim Flashner	gn: edirect: Update to 12.1.20190829.	blob \| commitdiff \| raw \| diff to current
2020-02-13	Marius Bakke	gnu: python2-pbcore: Remove python2-sphinx dependency.	blob \| commitdiff \| raw \| diff to current
2020-01-29	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-gviz: Update to 1.30.1.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.38.1.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.24.3.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Ricardo Wurmus	gnu: r-diversitree: Update to 0.9-13.	blob \| commitdiff \| raw \| diff to current
2020-01-27	Julien Lepiller	gnu: ocaml: Switch to ocaml 4.09 by default.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: Use HTTPS for (gnu packages bioinformatics) home...	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: r-gage: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: sra-tools: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: raxml: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: prodigal: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: miso: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: grit: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: express-beta-diversity: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-21	Tobias Geerinckx...	gnu: dendropy: Update home page.	blob \| commitdiff \| raw \| diff to current
2020-01-20	Tobias Geerinckx...	gnu: Use HTTPS for bioconductor.org.	blob \| commitdiff \| raw \| diff to current
2020-01-19	Tobias Geerinckx...	gnu: edirect: Use HTTPS home page.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Marius Bakke	gnu: kentutils: Build with OpenSSL 1.0.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.12.2.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-iranges: Update to 2.20.2.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.24.2.	blob \| commitdiff \| raw \| diff to current
2020-01-16	Ricardo Wurmus	gnu: r-biocstyle: Update to 2.14.4.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: smithwaterman: Update to 0.0.0-2.2610e25.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: vcflib: Update to 1.0.1.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: fastahack: Update to 1.0.0.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: Add intervaltree.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: tabixpp: Update to 1.1.0.	blob \| commitdiff \| raw \| diff to current
2020-01-09	Efraim Flashner	gnu: bwa: Install static library.	blob \| commitdiff \| raw \| diff to current
2020-01-03	Marius Bakke	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
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jackhill's copy of GNU Guix: https://guix.gnu.org/

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