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[jackhill/guix/guix.git] / gnu / packages / bioinformatics.scm

2017-08-31	Ben Woodcroft	gnu: metabat: Update to 2.11.3.	blob \| commitdiff \| raw
2017-08-30	Ricardo Wurmus	gnu: multiqc: Update to 1.2.	blob \| commitdiff \| raw \| diff to current
2017-08-26	Marius Bakke	Merge branch 'core-updates'	blob \| commitdiff \| raw \| diff to current
2017-08-21	Marius Bakke	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-20	Ricardo Wurmus	gnu: Add r-annotationfilter.	blob \| commitdiff \| raw \| diff to current
2017-08-17	Ricardo Wurmus	gnu: Add r-methylkit.	blob \| commitdiff \| raw \| diff to current
2017-08-17	Ricardo Wurmus	gnu: Add r-qvalue.	blob \| commitdiff \| raw \| diff to current
2017-08-17	Ricardo Wurmus	gnu: Add r-fastseg.	blob \| commitdiff \| raw \| diff to current
2017-08-17	Ricardo Wurmus	gnu: Add r-annotationhub.	blob \| commitdiff \| raw \| diff to current
2017-08-17	Ricardo Wurmus	gnu: Add r-interactivedisplaybase.	blob \| commitdiff \| raw \| diff to current
2017-08-16	Efraim Flashner	gnu: r-mzr: Fix building on aarch64 and armhf.	blob \| commitdiff \| raw \| diff to current
2017-08-15	Ben Woodcroft	gnu: diamond: Update to 0.9.10.	blob \| commitdiff \| raw \| diff to current
2017-08-15	Efraim Flashner	gnu: bcftools: Fix building on aarch64.	blob \| commitdiff \| raw \| diff to current
2017-08-15	Mark H Weaver	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-14	Ricardo Wurmus	gnu: Add bismark.	blob \| commitdiff \| raw \| diff to current
2017-08-14	Ricardo Wurmus	gnu: Add r-dexseq.	blob \| commitdiff \| raw \| diff to current
2017-08-11	Mark H Weaver	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-09	Marius Bakke	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-09	Mark H Weaver	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-09	Ricardo Wurmus	gnu: r-wgcna: Update to 1.61.	blob \| commitdiff \| raw \| diff to current
2017-08-09	Ricardo Wurmus	gnu: Add reference to (gnu packages graph).	blob \| commitdiff \| raw \| diff to current
2017-08-07	Mark H Weaver	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-06	Tobias Geerinckx...	gnu: r-bsgenome-hsapiens-ucsc-hg19: Restore original...	blob \| commitdiff \| raw \| diff to current
2017-08-06	Mark H Weaver	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-04	Ludovic Courtès	gnu: perl: Work around more "dotless @INC" build issues.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Efraim Flashner	gnu: bioinformatics.scm: Use (gnu packages cran) module.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ricardo Wurmus	gnu: r-seqminer: Update to 6.0.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ricardo Wurmus	gnu: r-wgcna: Update to 1.60.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ricardo Wurmus	gnu: r-qtl: Update to 1.41-6.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ricardo Wurmus	gnu: r-seqinr: Update to 3.4-5.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ricardo Wurmus	gnu: r-optparse: Update to 1.4.4.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ricardo Wurmus	gnu: r-bookdown: Update to 0.4.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ben Woodcroft	gnu: htseq: Use PyPI URI.	blob \| commitdiff \| raw \| diff to current
2017-08-03	Ben Woodcroft	gnu: htseq: Update to 0.9.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-deseq2: Update to 1.16.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-annotationforge: Update to 1.18.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-category: Update to 2.42.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-biocstyle: Update to 2.4.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-dnacopy: Update to 1.50.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-iranges: Update to 2.10.2.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-genomeinfodb: Update to 1.12.2.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-variantannotation: Update to 1.22.3.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-limma: Update to 3.32.5.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-biobase: Update to 2.36.2.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-annotationdbi: Update to 1.38.2.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-biomart: Update to 2.32.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-biocparallel: Update to 1.10.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-biostrings: Update to 2.44.2.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-delayedarray: Update to 0.2.7.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-summarizedexperiment: Update to 1.6.3.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-genomicalignments: Update to 1.12.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-rtracklayer: Update to 1.36.4.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-genomicfeatures: Update to 1.28.4.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-copywriter: Update to 2.8.1.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Roel Janssen	gnu: r-sva: Update to 3.24.4.	blob \| commitdiff \| raw \| diff to current
2017-08-01	Marius Bakke	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-08-01	Efraim Flashner	gnu: metabat: Limit to x86_64 and i686 only.	blob \| commitdiff \| raw \| diff to current
2017-07-29	Ben Woodcroft	gnu: metabat: Update to 2.11.2.	blob \| commitdiff \| raw \| diff to current
2017-07-27	Marius Bakke	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-07-23	Leo Famulari	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: metabat: Fix boost-related compilation issue.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Leo Famulari	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: metabat: Update to 2.11.1.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: python-plastid: Update to 0.4.8.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: bcftools: Update to 1.5.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: samtools: Update to 1.5.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: htslib: Update to 1.5.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: python-pysam: Update to 0.11.2.2.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: bamm: Use htslib-1.3.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: bcftools: Update to 1.4.1.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: samtools: Update to 1.4.1.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: htslib: Update to 1.4.1.	blob \| commitdiff \| raw \| diff to current
2017-07-23	Ben Woodcroft	gnu: samtools: Use "modify-phases" syntax.	blob \| commitdiff \| raw \| diff to current
2017-07-22	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.14.3.	blob \| commitdiff \| raw \| diff to current
2017-07-22	Ricardo Wurmus	gnu: r-genomicranges: Update to 1.28.4.	blob \| commitdiff \| raw \| diff to current
2017-07-19	Ricardo Wurmus	gnu: r-bsgenome-hsapiens-ucsc-hg19: Update hash.	blob \| commitdiff \| raw \| diff to current
2017-07-19	Efraim Flashner	gnu: sortmerna: Limit support to x86_64 and i686 only.	blob \| commitdiff \| raw \| diff to current
2017-07-18	Efraim Flashner	gnu: raxml: Limit to x86_64 and i686 only.	blob \| commitdiff \| raw \| diff to current
2017-07-14	Ben Woodcroft	gnu: bowtie: Use 'modify-phases'.	blob \| commitdiff \| raw \| diff to current
2017-07-14	Ben Woodcroft	gnu: bowtie: Update to 2.3.2.	blob \| commitdiff \| raw \| diff to current
2017-07-10	Leo Famulari	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-07-09	Ricardo Wurmus	gnu: deeptools: Update to 2.5.1.	blob \| commitdiff \| raw \| diff to current
2017-07-09	Ricardo Wurmus	gnu: Add python-py2bit.	blob \| commitdiff \| raw \| diff to current
2017-07-08	Ben Woodcroft	gnu: blast+: Update to 2.6.0.	blob \| commitdiff \| raw \| diff to current
2017-07-06	Leo Famulari	Revert "gnu: blast+: Update to 2.6.0."	blob \| commitdiff \| raw \| diff to current
2017-07-04	Efraim Flashner	gnu: gemma: Fix building on non-Intel architectures.	blob \| commitdiff \| raw \| diff to current
2017-07-04	Ben J Woodcroft	gnu: diamond: Update to 0.9.9.	blob \| commitdiff \| raw \| diff to current
2017-07-04	Ben Woodcroft	gnu: blast+: Update to 2.6.0.	blob \| commitdiff \| raw \| diff to current
2017-07-01	Ben Woodcroft	gnu: cd-hit: Update to 4.6.8.	blob \| commitdiff \| raw \| diff to current
2017-06-30	Ben Woodcroft	gnu: bwa: Update to 0.7.15.	blob \| commitdiff \| raw \| diff to current
2017-06-26	Mark H Weaver	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-06-25	Ricardo Wurmus	gnu: Add f-seq.	blob \| commitdiff \| raw \| diff to current
2017-06-24	Ben Woodcroft	gnu: orfm: Update to 0.7.1.	blob \| commitdiff \| raw \| diff to current
2017-06-23	Ben Woodcroft	gnu: orfm: Update to 0.7.0.	blob \| commitdiff \| raw \| diff to current
2017-06-23	Ricardo Wurmus	gnu: Add kentutils.	blob \| commitdiff \| raw \| diff to current
2017-06-22	Ricardo Wurmus	gnu: python2-bx-python: Update to 0.7.3.	blob \| commitdiff \| raw \| diff to current
2017-06-20	Arun Isaac	gnu: Move contents of zip module into compression module.	blob \| commitdiff \| raw \| diff to current
2017-06-18	Mark H Weaver	Merge branch 'master' into core-updates	blob \| commitdiff \| raw \| diff to current
2017-06-17	Ben Woodcroft	gnu: diamond: Update to 0.9.8.	blob \| commitdiff \| raw \| diff to current
2017-06-15	Tobias Geerinckx...	gnu: tadbit: Fix typo in description.	blob \| commitdiff \| raw \| diff to current
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jackhill's copy of GNU Guix: https://guix.gnu.org/

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