gnu: metabat: Update to 2.11.3.

[jackhill/guix/guix.git] / gnu / packages / bioinformatics.scm

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c515704..e372953 100644 (file)
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3475,19 +3475,19 @@ form of assemblies or reads.")
 (define-public metabat
   (package
     (name "metabat")
-    (version "2.11.2")
+    (version "2.11.3")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "https://bitbucket.org/berkeleylab/metabat/get/v"
-                           version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://bitbucket.org/berkeleylab/metabat.git")
+             (commit "d0ad65367ffc8e08d1a9dd1388d6170daa047e5c")))
+       (file-name (string-append name "-" version "-checkout"))
        (sha256
         (base32
-         "0rws9r1ziv6way8cf49jg8bzj7x2131kfqkhj8byf0z5hnrq3bwv"))
+         "1rlsrkz8iq8xah65222p055kzv5i3szz8bwysnvnh0pv72wvv6ww"))
        (patches (search-patches "metabat-remove-compilation-date.patch"
-                                "metabat-fix-compilation.patch"
-                                "metabat-fix-boost-issue.patch"))))
+                                "metabat-fix-compilation.patch"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -8575,25 +8575,24 @@ replacement for strverscmp.")
 (define-public multiqc
   (package
     (name "multiqc")
-    (version "0.9")
+    (version "1.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "multiqc" version))
        (sha256
         (base32
-         "12gs1jw2jrxrij529rnl5kaqxfcqn15yzcsggxkfhdx634ml0cny"))
-       (patches (search-patches "multiqc-fix-git-subprocess-error.patch"))))
+         "032svgym67k2ds7wp0cxzv79gi30yrdl45zbqn74lni3dk04qm33"))))
     (build-system python-build-system)
-    (arguments
-     ;; Tests are to be introduced in the next version, see
-     ;; https://github.com/ewels/MultiQC/issues/376
-     `(#:tests? #f))
     (propagated-inputs
      `(("python-jinja2" ,python-jinja2)
        ("python-simplejson" ,python-simplejson)
        ("python-pyyaml" ,python-pyyaml)
        ("python-click" ,python-click)
+       ("python-spectra" ,python-spectra)
+       ("python-requests" ,python-requests)
+       ("python-markdown" ,python-markdown)
+       ("python-lzstring" ,python-lzstring)
        ("python-matplotlib" ,python-matplotlib)
        ("python-numpy" ,python-numpy)
        ;; MultQC checks for the presence of nose at runtime.