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[jackhill/guix/guix.git] / gnu / packages / bioinformatics.scm

2021-04-16	Roel Janssen	gnu: Update blast+ to 2.11.0.	blob \| commitdiff \| raw
2021-04-14	Arun Isaac	gnu: cwltool: Update to 3.0.20210319143721.	blob \| commitdiff \| raw \| diff to current
2021-04-14	Arun Isaac	gnu: python-schema-salad: Update to 7.1.20210316164414.	blob \| commitdiff \| raw \| diff to current
2021-04-10	Tobias Geerinckx...	gnu: sortmerna: Mark up description.	blob \| commitdiff \| raw \| diff to current
2021-04-08	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.42.3.	blob \| commitdiff \| raw \| diff to current
2021-03-31	zimoun	Revert "Revert some commits that caused `guix pull...	blob \| commitdiff \| raw \| diff to current
2021-03-31	Efraim Flashner	gnu: plink-ng: Build prettify binary.	blob \| commitdiff \| raw \| diff to current
2021-03-31	Efraim Flashner	gnu: plink-ng: Remove custom install phase.	blob \| commitdiff \| raw \| diff to current
2021-03-31	Efraim Flashner	gnu: plink-ng: Sort inputs alphabetically.	blob \| commitdiff \| raw \| diff to current
2021-03-31	Efraim Flashner	gnu: plink-ng: Update to 2.00a2.3.	blob \| commitdiff \| raw \| diff to current
2021-03-22	Hong Li	gnu: Add r-signac.	blob \| commitdiff \| raw \| diff to current
2021-03-17	Mark H Weaver	gnu: Use PACKAGE/INHERIT in more places.	blob \| commitdiff \| raw \| diff to current
2021-03-16	Ricardo Wurmus	gnu: hisat2: Update to 2.2.1.	blob \| commitdiff \| raw \| diff to current
2021-03-15	Leo Famulari	Revert some commits that caused `guix pull` to fail.	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-delayedarray: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-rsamtools: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-biostrings: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-biocparallel: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-biomart: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-annotationdbi: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-biobase: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-genomicranges: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-xvector: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-limma: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	Ricardo Wurmus	gnu: r-genomicfeatures: Update to 1.42.2.	blob \| commitdiff \| raw \| diff to current
2021-03-15	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.16.2.	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-variantannotation: Move to (gnu packages biocond...	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-edger: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-genomeinfodb: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-genomeinfodbdata: Move to (gnu packages biocondu...	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-iranges: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-s4vectors: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-bioccheck: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-grohmm: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-biocstyle: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	zimoun	gnu: r-biocviews: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-15	Ricardo Wurmus	gnu: Add instrain.	blob \| commitdiff \| raw \| diff to current
2021-03-15	Ricardo Wurmus	gnu: Add python-drep.	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-systempiper: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-shortread: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-gostats: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-category: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-gseabase: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-rbgl: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-annotationforge: Move to (gnu packages bioconduc...	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-dexseq: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-deseq2: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-12	zimoun	gnu: r-genefilter: Move to (gnu packages bioconductor).	blob \| commitdiff \| raw \| diff to current
2021-03-11	Efraim Flashner	gnu: Add bandage.	blob \| commitdiff \| raw \| diff to current
2021-03-09	Ricardo Wurmus	gnu: trim-galore: Update to 0.6.6.	blob \| commitdiff \| raw \| diff to current
2021-03-09	Ricardo Wurmus	gnu: bbmap: Update to 38.90.	blob \| commitdiff \| raw \| diff to current
2021-03-06	Nicolas Goaziou	gnu: seqan-1: Use HTTPS source URI.	blob \| commitdiff \| raw \| diff to current
2021-03-06	Nicolas Goaziou	gnu: seqan: Use HTTPS home page URI.	blob \| commitdiff \| raw \| diff to current
2021-03-05	Ricardo Wurmus	gnu: Add r-cellchat.	blob \| commitdiff \| raw \| diff to current
2021-03-03	Tim Howes	gnu: infernal: Update to 1.1.4.	blob \| commitdiff \| raw \| diff to current
2021-03-03	Tim Howes	gnu: hmmer: Update to 3.3.2.	blob \| commitdiff \| raw \| diff to current
2021-03-02	Ricardo Wurmus	gnu: kallisto: Update to 0.46.2.	blob \| commitdiff \| raw \| diff to current
2021-03-02	Ricardo Wurmus	gnu: kallisto: Use older htslib.	blob \| commitdiff \| raw \| diff to current
2021-02-28	Nicolas Goaziou	gnu: f-seq: Use HTTPS home page URI.	blob \| commitdiff \| raw \| diff to current
2021-02-23	Ricardo Wurmus	gnu: Add star-for-pigx.	blob \| commitdiff \| raw \| diff to current
2021-02-22	Ricardo Wurmus	gnu: star: Update to 2.7.8a.	blob \| commitdiff \| raw \| diff to current
2021-02-19	Ricardo Wurmus	gnu: nanopolish: Fix script wrapping.	blob \| commitdiff \| raw \| diff to current
2021-02-19	Ricardo Wurmus	gnu: Add prinseq.	blob \| commitdiff \| raw \| diff to current
2021-02-19	Ricardo Wurmus	gnu: Add ngshmmalign.	blob \| commitdiff \| raw \| diff to current
2021-02-18	Ricardo Wurmus	gnu: Add r-archr.	blob \| commitdiff \| raw \| diff to current
2021-02-15	Ricardo Wurmus	gnu: Add indelfixer.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Mădălin Ionel Patrașcu	gnu: bowtie1: Update to 1.3.0.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-gage: Update to 2.40.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-msnbase: Update to 2.16.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-methylkit: Update to 1.16.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-delayedarray: Update to 0.16.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-biomart: Update to 2.46.3.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-edger: Update to 3.32.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-iranges: Update to 2.24.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-s4vectors: Update to 0.28.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-systempiper: Update to 1.24.3.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-gseabase: Update to 1.52.1.	blob \| commitdiff \| raw \| diff to current
2021-02-11	Ricardo Wurmus	gnu: r-genefilter: Update to 1.72.1.	blob \| commitdiff \| raw \| diff to current
2021-02-05	Ricardo Wurmus	gnu: rsem: Link with shared libhts library.	blob \| commitdiff \| raw \| diff to current
2021-02-01	Leo Famulari	Merge branch 'staging'	blob \| commitdiff \| raw \| diff to current
2021-02-01	Efraim Flashner	gnu: vcflib: Fix generated pkg-config file.	blob \| commitdiff \| raw \| diff to current
2021-01-29	Maxim Cournoyer	gnu: grocsvs: Remove package.	blob \| commitdiff \| raw \| diff to current
2021-01-28	Ricardo Wurmus	gnu: Add r-demultiplex.	blob \| commitdiff \| raw \| diff to current
2021-01-28	Ricardo Wurmus	gnu: Add repeat-masker.	blob \| commitdiff \| raw \| diff to current
2021-01-28	Ricardo Wurmus	gnu: Add trf.	blob \| commitdiff \| raw \| diff to current
2021-01-25	Leo Famulari	Merge branch 'master' into staging	blob \| commitdiff \| raw \| diff to current
2021-01-19	Efraim Flashner	gnu: freebayes: Update source, home-page URIs.	blob \| commitdiff \| raw \| diff to current
2021-01-19	Efraim Flashner	gnu: freebayes: Don't include vcflib sources.	blob \| commitdiff \| raw \| diff to current
2021-01-19	Efraim Flashner	gnu: vcflib: Add pkg-config file.	blob \| commitdiff \| raw \| diff to current
2021-01-19	Efraim Flashner	gnu: vcflib: Build a shared library.	blob \| commitdiff \| raw \| diff to current
2021-01-19	Efraim Flashner	gnu: freebayes: Extend test timeout on slower architect...	blob \| commitdiff \| raw \| diff to current
2021-01-18	Mădălin Ionel Patrașcu	gnu: Add r-snapatac.	blob \| commitdiff \| raw \| diff to current
2021-01-18	Mădălin Ionel Patrașcu	gnu: mafft: Update to 7.475.	blob \| commitdiff \| raw \| diff to current
2021-01-18	Efraim Flashner	gnu: ruby-bio-vcf: Rename to bio-vcf.	blob \| commitdiff \| raw \| diff to current
2021-01-18	Efraim Flashner	gnu: Add ruby-bio-vcf.	blob \| commitdiff \| raw \| diff to current
2021-01-17	Efraim Flashner	gnu: freebayes: Update to 1.3.3.	blob \| commitdiff \| raw \| diff to current
2021-01-17	Efraim Flashner	gnu: multichoose: Install header files.	blob \| commitdiff \| raw \| diff to current
2021-01-17	Efraim Flashner	gnu: filevercmp: Install header files.	blob \| commitdiff \| raw \| diff to current
2021-01-14	Efraim Flashner	gnu: vcflib: Update to 1.0.2.	blob \| commitdiff \| raw \| diff to current
2021-01-14	Efraim Flashner	gnu: sambamba Update to 0.8.0.	blob \| commitdiff \| raw \| diff to current
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jackhill's copy of GNU Guix: https://guix.gnu.org/

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