gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
  13 ;;;
  14 ;;; This file is part of GNU Guix.
  15 ;;;
  16 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  17 ;;; under the terms of the GNU General Public License as published by
  18 ;;; the Free Software Foundation; either version 3 of the License, or (at
  19 ;;; your option) any later version.
  20 ;;;
  21 ;;; GNU Guix is distributed in the hope that it will be useful, but
  22 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  23 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  24 ;;; GNU General Public License for more details.
  25 ;;;
  26 ;;; You should have received a copy of the GNU General Public License
  27 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  28
  29 (define-module (gnu packages package-management)
  30   #:use-module (gnu packages)
  31   #:use-module (gnu packages acl)
  32   #:use-module (gnu packages attr)
  33   #:use-module (gnu packages avahi)
  34   #:use-module (gnu packages autotools)
  35   #:use-module (gnu packages backup)
  36   #:use-module (gnu packages bdw-gc)
  37   #:use-module (gnu packages bison)
  38   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  39   #:use-module (gnu packages check)
  40   #:use-module (gnu packages compression)
  41   #:use-module (gnu packages cpio)
  42   #:use-module (gnu packages crypto)
  43   #:use-module (gnu packages curl)
  44   #:use-module (gnu packages dbm)
  45   #:use-module (gnu packages docbook)
  46   #:use-module (gnu packages file)
  47   #:use-module (gnu packages gettext)
  48   #:use-module (gnu packages glib)
  49   #:use-module (gnu packages gnome)
  50   #:use-module (gnu packages gnupg)
  51   #:use-module (gnu packages gnuzilla)
  52   #:use-module (gnu packages graphviz)
  53   #:use-module (gnu packages gtk)
  54   #:use-module (gnu packages guile)
  55   #:use-module (gnu packages linux)
  56   #:use-module (gnu packages lisp)
  57   #:use-module (gnu packages man)
  58   #:use-module (gnu packages nettle)
  59   #:use-module (gnu packages patchutils)
  60   #:use-module (gnu packages perl)
  61   #:use-module (gnu packages perl-check)
  62   #:use-module (gnu packages pkg-config)
  63   #:use-module (gnu packages popt)
  64   #:use-module (gnu packages python)
  65   #:use-module (gnu packages python-web)
  66   #:use-module (gnu packages python-xyz)
  67   #:use-module (gnu packages serialization)
  68   #:use-module (gnu packages sqlite)
  69   #:use-module (gnu packages ssh)
  70   #:use-module (gnu packages texinfo)
  71   #:use-module (gnu packages time)
  72   #:use-module (gnu packages tls)
  73   #:use-module (gnu packages vim)
  74   #:use-module (gnu packages virtualization)
  75   #:use-module (gnu packages web)
  76   #:use-module (gnu packages xml)
  77   #:use-module (gnu packages xorg)
  78   #:use-module (guix build-system gnu)
  79   #:use-module (guix build-system meson)
  80   #:use-module (guix build-system python)
  81   #:use-module (guix download)
  82   #:use-module (guix gexp)
  83   #:use-module (guix git-download)
  84   #:use-module ((guix licenses) #:prefix license:)
  85   #:use-module (guix packages)
  86   #:use-module (guix utils)
  87   #:use-module (ice-9 match)
  88   #:use-module (srfi srfi-1))
  89
  90 (define (boot-guile-uri arch)
  91   "Return the URI for the bootstrap Guile tarball for ARCH."
  92   (cond ((string=? "armhf" arch)
  93          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  94                         arch "-linux"
  95                         "/20150101/guile-2.0.11.tar.xz"))
  96         ((string=? "aarch64" arch)
  97          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  98                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
  99         (else
 100          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 101                         arch "-linux"
 102                         "/20131110/guile-2.0.9.tar.xz"))))
 103
 104 (define-public guix
 105   ;; Latest version of Guix, which may or may not correspond to a release.
 106   ;; Note: the 'update-guix-package.scm' script expects this definition to
 107   ;; start precisely like this.
 108   (let ((version "0.16.0")
 109         (commit "7ba2b27467a39956f10e2e11061d9569e4b7d632")
 110         (revision 8))
 111     (package
 112       (name "guix")
 113
 114       (version (if (zero? revision)
 115                    version
 116                    (string-append version "-"
 117                                   (number->string revision)
 118                                   "." (string-take commit 7))))
 119       (source (origin
 120                 (method git-fetch)
 121                 (uri (git-reference
 122                       (url "https://git.savannah.gnu.org/r/guix.git")
 123                       (commit commit)))
 124                 (sha256
 125                  (base32
 126                   "14srgkl0vyr6q7azv76nncp63gngmm71y18ybyj9f6l6s4shbcm4"))
 127                 (file-name (string-append "guix-" version "-checkout"))))
 128       (build-system gnu-build-system)
 129       (arguments
 130        `(#:configure-flags (list
 131                             "--localstatedir=/var"
 132                             "--sysconfdir=/etc"
 133                             (string-append "--with-bash-completion-dir="
 134                                            (assoc-ref %outputs "out")
 135                                            "/etc/bash_completion.d")
 136                             (string-append "--with-libgcrypt-prefix="
 137                                            (assoc-ref %build-inputs
 138                                                       "libgcrypt"))
 139
 140                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 141                             ;; we don't keep a reference to Graphviz, whose
 142                             ;; closure is pretty big (too big for the GuixSD
 143                             ;; installation image.)
 144                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 145
 146                             ;; To avoid problems with the length of shebangs,
 147                             ;; choose a fixed-width and short directory name
 148                             ;; for tests.
 149                             "ac_cv_guix_test_root=/tmp/guix-tests")
 150          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 151
 152          #:modules ((guix build gnu-build-system)
 153                     (guix build utils)
 154                     (srfi srfi-26)
 155                     (ice-9 popen)
 156                     (ice-9 rdelim))
 157
 158          #:phases (modify-phases %standard-phases
 159                     (replace 'bootstrap
 160                       (lambda _
 161                         ;; Make sure 'msgmerge' can modify the PO files.
 162                         (for-each (lambda (po)
 163                                     (chmod po #o666))
 164                                   (find-files "." "\\.po$"))
 165
 166                         (patch-shebang "build-aux/git-version-gen")
 167
 168                         (call-with-output-file ".tarball-version"
 169                           (lambda (port)
 170                             (display ,version port)))
 171
 172                         (invoke "sh" "bootstrap")))
 173                     (add-before 'check 'copy-bootstrap-guile
 174                       (lambda* (#:key system inputs #:allow-other-keys)
 175                         ;; Copy the bootstrap guile tarball in the store used
 176                         ;; by the test suite.
 177                         (define (intern tarball)
 178                           (let ((base (strip-store-file-name tarball)))
 179                             (copy-file tarball base)
 180                             (invoke "./test-env" "guix" "download"
 181                                     (string-append "file://" (getcwd)
 182                                                    "/" base))
 183                             (delete-file base)))
 184
 185
 186                         (intern (assoc-ref inputs "boot-guile"))
 187
 188                         ;; On x86_64 some tests need the i686 Guile.
 189                         ,@(if (and (not (%current-target-system))
 190                                    (string=? (%current-system)
 191                                              "x86_64-linux"))
 192                               '((intern (assoc-ref inputs "boot-guile/i686")))
 193                               '())
 194                         #t))
 195                     (add-after 'unpack 'disable-failing-tests
 196                       ;; XXX FIXME: These tests fail within the build container.
 197                       (lambda _
 198                         (substitute* "tests/syscalls.scm"
 199                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 200                            (string-append "(test-skip 1)\n" all)))
 201                         (substitute* "tests/containers.scm"
 202                           (("^\\(test-(assert|equal)" all)
 203                            (string-append "(test-skip 1)\n" all)))
 204                         (when (file-exists? "tests/guix-environment-container.sh")
 205                           (substitute* "tests/guix-environment-container.sh"
 206                             (("guix environment --version")
 207                              "exit 77\n")))
 208                         #t))
 209                     (add-before 'check 'set-SHELL
 210                       (lambda _
 211                         ;; 'guix environment' tests rely on 'SHELL' having a
 212                         ;; correct value, so set it.
 213                         (setenv "SHELL" (which "sh"))
 214                         #t))
 215                     (add-after 'install 'wrap-program
 216                       (lambda* (#:key inputs outputs #:allow-other-keys)
 217                         ;; Make sure the 'guix' command finds GnuTLS,
 218                         ;; Guile-JSON, and Guile-Git automatically.
 219                         (let* ((out    (assoc-ref outputs "out"))
 220                                (guile  (assoc-ref inputs "guile"))
 221                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 222                                (json   (assoc-ref inputs "guile-json"))
 223                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 224                                (git    (assoc-ref inputs "guile-git"))
 225                                (bs     (assoc-ref inputs
 226                                                   "guile-bytestructures"))
 227                                (ssh    (assoc-ref inputs "guile-ssh"))
 228                                (gnutls (assoc-ref inputs "gnutls"))
 229                                (deps   (list gcrypt json sqlite gnutls
 230                                              git bs ssh))
 231                                (effective
 232                                 (read-line
 233                                  (open-pipe* OPEN_READ
 234                                              (string-append guile "/bin/guile")
 235                                              "-c" "(display (effective-version))")))
 236                                (path   (string-join
 237                                         (map (cut string-append <>
 238                                                   "/share/guile/site/"
 239                                                   effective)
 240                                              (delete #f deps))
 241                                         ":"))
 242                                (gopath (string-join
 243                                         (map (cut string-append <>
 244                                                   "/lib/guile/" effective
 245                                                   "/site-ccache")
 246                                              (delete #f deps))
 247                                         ":")))
 248
 249                           (wrap-program (string-append out "/bin/guix")
 250                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 251                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath)))
 252
 253                           #t))))))
 254       (native-inputs `(("pkg-config" ,pkg-config)
 255
 256                        ;; XXX: Keep the development inputs here even though
 257                        ;; they're unnecessary, just so that 'guix environment
 258                        ;; guix' always contains them.
 259                        ("autoconf" ,autoconf-wrapper)
 260                        ("automake" ,automake)
 261                        ("gettext" ,gettext-minimal)
 262                        ("texinfo" ,texinfo)
 263                        ("graphviz" ,graphviz)
 264                        ("help2man" ,help2man)
 265                        ("po4a" ,po4a)))
 266       (inputs
 267        `(("bzip2" ,bzip2)
 268          ("gzip" ,gzip)
 269          ("zlib" ,zlib)                           ;for 'guix publish'
 270
 271          ("sqlite" ,sqlite)
 272          ("libgcrypt" ,libgcrypt)
 273
 274          ("guile" ,guile-2.2)
 275
 276          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 277          ;; have it here.
 278          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 279          ;; Some of the tests use "unshare" when it is available.
 280          ("util-linux" ,util-linux)
 281          ,@(if (and (not (%current-target-system))
 282                     (string=? (%current-system) "x86_64-linux"))
 283                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 284                '())))
 285       (propagated-inputs
 286        `(("gnutls" ,gnutls)
 287          ("guile-gcrypt" ,guile-gcrypt)
 288          ("guile-json" ,guile-json)
 289          ("guile-sqlite3" ,guile-sqlite3)
 290          ("guile-ssh" ,guile-ssh)
 291          ("guile-git" ,guile-git)))
 292
 293       (home-page "https://www.gnu.org/software/guix/")
 294       (synopsis "Functional package manager for installed software packages and versions")
 295       (description
 296        "GNU Guix is a functional package manager for the GNU system, and is
 297 also a distribution thereof.  It includes a virtual machine image.  Besides
 298 the usual package management features, it also supports transactional
 299 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 300 the Nix package manager.")
 301       (license license:gpl3+)
 302       (properties '((ftp-server . "alpha.gnu.org"))))))
 303
 304 ;; Alias for backward compatibility.
 305 (define-public guix-devel guix)
 306
 307 (define-public guix-daemon
 308   ;; This package is for internal consumption: it allows us to quickly build
 309   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 310   ;; pull'.
 311   (package
 312     (inherit guix)
 313     (properties `((hidden? . #t)))
 314     (name "guix-daemon")
 315
 316     ;; Use a minimum set of dependencies.
 317     (native-inputs
 318      (fold alist-delete (package-native-inputs guix)
 319            '("po4a" "graphviz" "help2man")))
 320     (inputs
 321      `(("gnutls" ,gnutls)
 322        ("guile-git" ,guile-git)
 323        ("guile-json" ,guile-json)
 324        ("guile-gcrypt" ,guile-gcrypt)
 325        ,@(fold alist-delete (package-inputs guix)
 326                '("boot-guile" "boot-guile/i686" "util-linux"))))
 327
 328     (propagated-inputs '())
 329
 330     (arguments
 331      (substitute-keyword-arguments (package-arguments guix)
 332        ((#:configure-flags flags '())
 333         ;; Pretend we have those libraries; we don't actually need them.
 334         `(append ,flags
 335                  '("guix_cv_have_recent_guile_sqlite3=yes"
 336                    "guix_cv_have_recent_guile_ssh=yes")))
 337        ((#:tests? #f #f)
 338         #f)
 339        ((#:phases phases '%standard-phases)
 340         `(modify-phases ,phases
 341            (replace 'build
 342              (lambda _
 343                (invoke "make" "nix/libstore/schema.sql.hh")
 344                (invoke "make" "-j" (number->string
 345                                     (parallel-job-count))
 346                        "guix-daemon")))
 347            (delete 'copy-bootstrap-guile)
 348            (replace 'install
 349              (lambda* (#:key outputs #:allow-other-keys)
 350                (invoke "make" "install-binPROGRAMS"
 351                        "install-nodist_pkglibexecSCRIPTS")
 352
 353                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 354                ;; Here we use a questionable hack where we hard-code root's
 355                ;; current guix, which could be wrong (XXX).  Note that scripts
 356                ;; like 'guix perform-download' do not run as root so we assume
 357                ;; that they have access to /var/guix/profiles/per-user/root.
 358                (let ((out (assoc-ref outputs "out")))
 359                  (substitute* (find-files (string-append out "/libexec"))
 360                    (("exec \".*/bin/guix\"")
 361                     "exec /var/guix/profiles/per-user/root/current-guix/bin/guix"))
 362                  #t)))
 363            (delete 'wrap-program)))))))
 364
 365 (define-public guile2.0-guix
 366   (deprecated-package "guile2.0-guix" guix))
 367
 368 (define-public guix-minimal
 369   ;; A version of Guix which is built with the minimal set of dependencies, as
 370   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 371   ;; marked as hidden.
 372   (hidden-package
 373    (package
 374      (inherit guix)
 375      (name "guix-minimal")
 376      (inputs
 377       `(("guile" ,guile-2.2)
 378         ,@(alist-delete "guile" (package-inputs guix))))
 379      (propagated-inputs
 380       (fold alist-delete
 381             (package-propagated-inputs guix)
 382             '("guile-ssh"))))))
 383
 384 (define (source-file? file stat)
 385   "Return true if FILE is likely a source file, false if it is a typical
 386 generated file."
 387   (define (wrong-extension? file)
 388     (or (string-suffix? "~" file)
 389         (member (file-extension file)
 390                 '("o" "a" "lo" "so" "go"))))
 391
 392   (match (basename file)
 393     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 394      #f)
 395     ((? wrong-extension?)
 396      #f)
 397     (_
 398      #t)))
 399
 400 (define-public current-guix-package
 401   ;; This parameter allows callers to override the package that 'current-guix'
 402   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 403   ;; for instance because it's not running from a source code checkout.
 404   (make-parameter #f))
 405
 406 (define-public current-guix
 407   (let* ((repository-root (canonicalize-path
 408                            (string-append (current-source-directory)
 409                                           "/../..")))
 410          (select? (delay (or (git-predicate repository-root)
 411                              source-file?))))
 412     (lambda ()
 413       "Return a package representing Guix built from the current source tree.
 414 This works by adding the current source tree to the store (after filtering it
 415 out) and returning a package that uses that as its 'source'."
 416       (or (current-guix-package)
 417           (package
 418             (inherit guix)
 419             (version (string-append (package-version guix) "+"))
 420             (source (local-file repository-root "guix-current"
 421                                 #:recursive? #t
 422                                 #:select? (force select?))))))))
 423
 424 \f
 425 ;;;
 426 ;;; Other tools.
 427 ;;;
 428
 429 (define-public nix
 430   (package
 431     (name "nix")
 432     (version "2.0.4")
 433     (source (origin
 434              (method url-fetch)
 435              (uri (string-append "http://nixos.org/releases/nix/nix-"
 436                                  version "/nix-" version ".tar.xz"))
 437              (sha256
 438               (base32
 439                "0ss9svxlh1pvrdmnqjvjyqjmbqmrdbyfarvbb14i9d4bggzl0r8n"))))
 440     (build-system gnu-build-system)
 441     (native-inputs `(("pkg-config" ,pkg-config)))
 442     (inputs `(("curl" ,curl)
 443               ("bzip2" ,bzip2)
 444               ("libgc" ,libgc)
 445               ("libseccomp" ,libseccomp)
 446               ("libsodium" ,libsodium)
 447               ("openssl" ,openssl)
 448               ("sqlite" ,sqlite)
 449               ("xz" ,xz)))
 450     (home-page "https://nixos.org/nix/")
 451     (synopsis "The Nix package manager")
 452     (description
 453      "Nix is a purely functional package manager.  This means that it treats
 454 packages like values in purely functional programming languages such as
 455 Haskell—they are built by functions that don't have side-effects, and they
 456 never change after they have been built.  Nix stores packages in the Nix
 457 store, usually the directory /nix/store, where each package has its own unique
 458 sub-directory.")
 459     (license license:lgpl2.1+)))
 460
 461 (define-public stow
 462   (package
 463     (name "stow")
 464     (version "2.2.2")
 465     (source (origin
 466               (method url-fetch)
 467               (uri (string-append "mirror://gnu/stow/stow-"
 468                                   version ".tar.gz"))
 469               (sha256
 470                (base32
 471                 "1pvky9fayms4r6fhns8jd0vavszd7d979w62vfd5n88v614pdxz2"))))
 472     (build-system gnu-build-system)
 473     (inputs
 474      `(("perl" ,perl)))
 475     (native-inputs
 476      `(("perl-test-simple" ,perl-test-simple)
 477        ("perl-test-output" ,perl-test-output)
 478        ("perl-capture-tiny" ,perl-capture-tiny)
 479        ("perl-io-stringy" ,perl-io-stringy)))
 480     (home-page "https://www.gnu.org/software/stow/")
 481     (synopsis "Managing installed software packages")
 482     (description
 483      "GNU Stow is a symlink manager.  It generates symlinks to directories
 484 of data and makes them appear to be merged into the same directory.  It is
 485 typically used for managing software packages installed from source, by
 486 letting you install them apart in distinct directories and then create
 487 symlinks to the files in a common directory such as /usr/local.")
 488     (license license:gpl2+)))
 489
 490 (define-public rpm
 491   (package
 492     (name "rpm")
 493     (version "4.14.2")
 494     (source (origin
 495               (method url-fetch)
 496               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 497                                   (version-major+minor version) ".x/rpm-"
 498                                   version ".tar.bz2"))
 499               (sha256
 500                (base32
 501                 "0armd7dqr8bl0isx8l4xlylm7dikasmxhhcbz336fkp2x30w5jw0"))))
 502     (build-system gnu-build-system)
 503     (arguments
 504      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 505                            "--enable-python"
 506                            "--without-lua")
 507        #:phases (modify-phases %standard-phases
 508                   (add-before 'configure 'set-nss-library-path
 509                     (lambda* (#:key inputs #:allow-other-keys)
 510                       (let ((nss (assoc-ref inputs "nss")))
 511                         (setenv "LIBRARY_PATH"
 512                                 (string-append (getenv "LIBRARY_PATH") ":"
 513                                                nss "/lib/nss"))
 514                         #t))))))
 515     (native-inputs
 516      `(("pkg-config" ,pkg-config)))
 517     (inputs
 518      `(("python" ,python-2)
 519        ("xz" ,xz)
 520        ("bdb" ,bdb)
 521        ("popt" ,popt)
 522        ("nss" ,nss)
 523        ("nspr" ,nspr)
 524        ("libarchive" ,libarchive)
 525        ("nettle" ,nettle)            ;XXX: actually a dependency of libarchive
 526        ("file" ,file)
 527        ("bzip2" ,bzip2)
 528        ("zlib" ,zlib)
 529        ("cpio" ,cpio)))
 530     (home-page "http://rpm.org/")
 531     (synopsis "The RPM Package Manager")
 532     (description
 533      "The RPM Package Manager (RPM) is a command-line driven package
 534 management system capable of installing, uninstalling, verifying, querying,
 535 and updating computer software packages.  Each software package consists of an
 536 archive of files along with information about the package like its version, a
 537 description.  There is also a library permitting developers to manage such
 538 transactions from C or Python.")
 539
 540     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 541     (license license:gpl2+)))
 542
 543 (define-public diffoscope
 544   (package
 545     (name "diffoscope")
 546     (version "106")
 547     (source (origin
 548               (method url-fetch)
 549               (uri (pypi-uri name version))
 550               (sha256
 551                (base32
 552                 "0qrfp7nha2n2s9h5ibcf7rqji1amh4cqbcf80m6anim6p3ik26da"))))
 553     (build-system python-build-system)
 554     (arguments
 555      `(#:phases (modify-phases %standard-phases
 556                   ;; setup.py mistakenly requires python-magic from PyPi, even
 557                   ;; though the Python bindings of `file` are sufficient.
 558                   ;; https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815844
 559                   (add-after 'unpack 'dependency-on-python-magic
 560                     (lambda _
 561                       (substitute* "setup.py"
 562                         (("'python-magic',") ""))))
 563                   ;; This test is broken because our `file` package has a
 564                   ;; bug in berkeley-db file type detection.
 565                   (add-after 'unpack 'remove-berkeley-test
 566                     (lambda _
 567                       (delete-file "tests/comparators/test_berkeley_db.py")
 568                       #t))
 569                   (add-after 'unpack 'embed-tool-references
 570                     (lambda* (#:key inputs #:allow-other-keys)
 571                       (substitute* "diffoscope/comparators/utils/compare.py"
 572                         (("\\['xxd',")
 573                          (string-append "['" (which "xxd") "',")))
 574                       (substitute* "diffoscope/comparators/elf.py"
 575                         (("@tool_required\\('readelf'\\)") "")
 576                         (("get_tool_name\\('readelf'\\)")
 577                          (string-append "'" (which "readelf") "'")))
 578                       (substitute* "diffoscope/comparators/directory.py"
 579                         (("@tool_required\\('stat'\\)") "")
 580                         (("@tool_required\\('getfacl'\\)") "")
 581                         (("\\['stat',")
 582                          (string-append "['" (which "stat") "',"))
 583                         (("\\['getfacl',")
 584                          (string-append "['" (which "getfacl") "',")))
 585                       #t))
 586                   (add-before 'check 'delete-failing-test
 587                     (lambda _
 588                       (delete-file "tests/test_tools.py") ;this requires /sbin to be on the path
 589                       #t)))))
 590     (inputs `(("rpm" ,rpm)                        ;for rpm-python
 591               ("python-file" ,python-file)
 592               ("python-debian" ,python-debian)
 593               ("python-libarchive-c" ,python-libarchive-c)
 594               ("python-tlsh" ,python-tlsh)
 595               ("acl" ,acl)                        ;for getfacl
 596               ("colordiff" ,colordiff)
 597               ("xxd" ,xxd)
 598
 599               ;; Below are modules used for tests.
 600               ("python-pytest" ,python-pytest)
 601               ("python-chardet" ,python-chardet)))
 602     (home-page "https://diffoscope.org/")
 603     (synopsis "Compare files, archives, and directories in depth")
 604     (description
 605      "Diffoscope tries to get to the bottom of what makes files or directories
 606 different.  It recursively unpacks archives of many kinds and transforms
 607 various binary formats into more human readable forms to compare them.  It can
 608 compare two tarballs, ISO images, or PDFs just as easily.")
 609     (license license:gpl3+)))
 610
 611 (define-public python-anaconda-client
 612   (package
 613     (name "python-anaconda-client")
 614     (version "1.6.3")
 615     (source
 616      (origin
 617        (method url-fetch)
 618        (uri (string-append "https://github.com/Anaconda-Platform/"
 619                            "anaconda-client/archive/" version ".tar.gz"))
 620        (file-name (string-append name "-" version ".tar.gz"))
 621        (sha256
 622         (base32
 623          "1wv4wi6k5jz7rlwfgvgfdizv77x3cr1wa2aj0k1595g7fbhkjhz2"))))
 624     (build-system python-build-system)
 625     (propagated-inputs
 626      `(("python-pyyaml" ,python-pyyaml)
 627        ("python-requests" ,python-requests)
 628        ("python-clyent" ,python-clyent)))
 629     (native-inputs
 630      `(("python-pytz" ,python-pytz)
 631        ("python-dateutil" ,python-dateutil)
 632        ("python-mock" ,python-mock)
 633        ("python-coverage" ,python-coverage)
 634        ("python-pillow" ,python-pillow)))
 635     (arguments
 636      `(#:phases
 637        (modify-phases %standard-phases
 638          ;; This is needed for some tests.
 639          (add-before 'check 'set-up-home
 640            (lambda* _ (setenv "HOME" "/tmp") #t))
 641          (add-before 'check 'remove-network-tests
 642            (lambda* _
 643              ;; Remove tests requiring a network connection
 644              (let ((network-tests '("tests/test_upload.py"
 645                                     "tests/test_authorizations.py"
 646                                     "tests/test_login.py"
 647                                     "tests/test_whoami.py"
 648                                     "utils/notebook/tests/test_data_uri.py"
 649                                     "utils/notebook/tests/test_base.py"
 650                                     "utils/notebook/tests/test_downloader.py"
 651                                     "inspect_package/tests/test_conda.py")))
 652                (with-directory-excursion "binstar_client"
 653                  (for-each delete-file network-tests)))
 654              #t)))))
 655     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 656     (synopsis "Anaconda Cloud command line client library")
 657     (description
 658      "Anaconda Cloud command line client library provides an interface to
 659 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 660 environments.")
 661     (license license:bsd-3)))
 662
 663 (define-public python2-anaconda-client
 664   (package-with-python2 python-anaconda-client))
 665
 666 (define-public python-conda
 667   (package
 668     (name "python-conda")
 669     (version "4.3.16")
 670     (source
 671      (origin
 672        (method url-fetch)
 673        (uri (string-append "https://github.com/conda/conda/archive/"
 674                            version ".tar.gz"))
 675        (file-name (string-append name "-" version ".tar.gz"))
 676        (sha256
 677         (base32
 678          "1jq8hyrc5npb5sf4vw6s6by4602yj8f79vzpbwdfgpkn02nfk1dv"))))
 679     (build-system python-build-system)
 680     (arguments
 681      `(#:phases
 682        (modify-phases %standard-phases
 683          (add-before 'build 'create-version-file
 684            (lambda _
 685              (with-output-to-file "conda/.version"
 686                (lambda () (display ,version)))
 687              #t))
 688          (add-before 'check 'remove-failing-tests
 689            (lambda _
 690              ;; These tests require internet/network access
 691              (let ((network-tests '("test_cli.py"
 692                                     "test_create.py"
 693                                     "test_export.py"
 694                                     "test_fetch.py"
 695                                     "test_history.py"
 696                                     "test_info.py"
 697                                     "test_install.py"
 698                                     "test_priority.py"
 699                                     "conda_env/test_cli.py"
 700                                     "conda_env/test_create.py"
 701                                     "conda_env/specs/test_notebook.py"
 702                                     "conda_env/utils/test_notebooks.py"
 703                                     "core/test_index.py"
 704                                     "core/test_repodata.py")))
 705                (with-directory-excursion "tests"
 706                  (for-each delete-file network-tests)
 707
 708                  ;; FIXME: This test creates a file, then deletes it and tests
 709                  ;; that the file was deleted.  For some reason it fails when
 710                  ;; building with guix, but does not when you run it in the
 711                  ;; directory left when you build with the --keep-failed
 712                  ;; option
 713                  (delete-file "gateways/disk/test_delete.py")
 714                  #t))))
 715          (replace 'check
 716            (lambda _
 717              (setenv "HOME" "/tmp")
 718              (invoke "py.test"))))))
 719     (native-inputs
 720      `(("python-cytoolz" ,python-cytoolz)
 721        ("python-ruamel.yaml" ,python-ruamel.yaml)
 722        ("python-requests" ,python-requests)
 723        ("python-pycosat" ,python-pycosat)
 724        ("python-pytest" ,python-pytest)
 725        ("python-responses" ,python-responses)
 726        ("python-pyyaml" ,python-pyyaml)
 727        ("python-anaconda-client" ,python-anaconda-client)))
 728     (home-page "https://github.com/conda/conda")
 729     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 730     (description
 731      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 732 is the package manager used by Anaconda installations, but it may be used for
 733 other systems as well.  Conda makes environments first-class citizens, making
 734 it easy to create independent environments even for C libraries.  Conda is
 735 written entirely in Python.
 736
 737 This package provides Conda as a library.")
 738     (license license:bsd-3)))
 739
 740 (define-public python2-conda
 741   (let ((base (package-with-python2
 742                (strip-python2-variant python-conda))))
 743     (package (inherit base)
 744              (native-inputs
 745               `(("python2-enum34" ,python2-enum34)
 746                 ,@(package-native-inputs base))))))
 747
 748 (define-public conda
 749   (package (inherit python-conda)
 750     (name "conda")
 751     (arguments
 752      (substitute-keyword-arguments (package-arguments python-conda)
 753        ((#:phases phases)
 754         `(modify-phases ,phases
 755            (replace 'build
 756              (lambda* (#:key outputs #:allow-other-keys)
 757                ;; This test fails when run before installation.
 758                (delete-file "tests/test_activate.py")
 759
 760                ;; Fix broken defaults
 761                (substitute* "conda/base/context.py"
 762                  (("return sys.prefix")
 763                   (string-append "return \"" (assoc-ref outputs "out") "\""))
 764                  (("return (prefix_is_writable\\(self.root_prefix\\))" _ match)
 765                   (string-append "return False if self.root_prefix == self.conda_prefix else "
 766                                  match)))
 767
 768                ;; The util/setup-testing.py is used to build conda in
 769                ;; application form, rather than the default, library form.
 770                ;; With this, we are able to run commands like `conda --help`
 771                ;; directly on the command line
 772                (invoke "python" "utils/setup-testing.py" "build_py")))
 773            (replace 'install
 774              (lambda* (#:key inputs outputs #:allow-other-keys)
 775                (let* ((out (assoc-ref outputs "out"))
 776                       (target (string-append out "/lib/python"
 777                                              ((@@ (guix build python-build-system)
 778                                                   get-python-version)
 779                                               (assoc-ref inputs "python"))
 780                                              "/site-packages/")))
 781                  ;; The installer aborts if the target directory is not on
 782                  ;; PYTHONPATH.
 783                  (setenv "PYTHONPATH"
 784                          (string-append target ":" (getenv "PYTHONPATH")))
 785
 786                  ;; And it aborts if the directory doesn't exist.
 787                  (mkdir-p target)
 788                  (invoke "python" "utils/setup-testing.py" "install"
 789                          (string-append "--prefix=" out)))))
 790            ;; The "activate" and "deactivate" scripts don't need wrapping.
 791            ;; They also break when they are renamed.
 792            (add-after 'wrap 'undo-wrap
 793              (lambda* (#:key outputs #:allow-other-keys)
 794                (with-directory-excursion (string-append (assoc-ref outputs "out") "/bin/")
 795                  (delete-file "deactivate")
 796                  (rename-file ".deactivate-real" "deactivate")
 797                  (delete-file "activate")
 798                  (rename-file ".activate-real" "activate")
 799                  #t)))))))
 800     (description
 801      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 802 is the package manager used by Anaconda installations, but it may be used for
 803 other systems as well.  Conda makes environments first-class citizens, making
 804 it easy to create independent environments even for C libraries.  Conda is
 805 written entirely in Python.")))
 806
 807 (define-public gwl
 808   (package
 809     (name "gwl")
 810     (version "0.1.1")
 811     (source (origin
 812               (method url-fetch)
 813               (uri (string-append "https://www.guixwl.org/releases/gwl-"
 814                                   version ".tar.gz"))
 815               (sha256
 816                (base32
 817                 "06pm967mq1wyggx7l0nfapw5s0k5qc5r9lawk2v3db868br779a7"))))
 818     (build-system gnu-build-system)
 819     (native-inputs
 820      `(("autoconf" ,autoconf)
 821        ("automake" ,automake)
 822        ("pkg-config" ,pkg-config)))
 823     (inputs
 824      `(("guile" ,guile-2.2)))
 825     (propagated-inputs
 826      `(("guix" ,guix)
 827        ("guile-commonmark" ,guile-commonmark)))
 828     (home-page "https://www.guixwl.org")
 829     (synopsis "Workflow management extension for GNU Guix")
 830     (description "This project provides two subcommands to GNU Guix and
 831 introduces two record types that provide a workflow management extension built
 832 on top of GNU Guix.")
 833     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 834     ;; the web interface modules in gwl/ are licensed AGPL3+,
 835     ;; and the fonts included in this package are licensed OFL1.1.
 836     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 837
 838 (define-public gcab
 839   (package
 840     (name "gcab")
 841     (version "1.1")
 842     (source (origin
 843               (method url-fetch)
 844               (uri (string-append "mirror://gnome/sources/" name "/"
 845                                   version "/" name "-" version ".tar.xz"))
 846               (sha256
 847                (base32
 848                 "0l19sr6pg0cfcddmi5n79d08mjjbhn427ip5jlsy9zddq9r24aqr"))
 849               ;; gcab 1.1 has a hard dependency on git — even when building
 850               ;; from a tarball.  Remove it early so ‘guix environment gcab’
 851               ;; can actually build what ‘guix build --source gcab’ returns.
 852               (modules '((guix build utils)))
 853               (snippet
 854                '(begin
 855                   (substitute* "meson.build"
 856                     (("git_version = .*$") "git_version = []\n"))
 857                   #t))))
 858     (build-system meson-build-system)
 859     (native-inputs
 860      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
 861        ("intltool" ,intltool)
 862        ("pkg-config" ,pkg-config)
 863        ("vala" ,vala)))
 864     (inputs
 865      `(("glib" ,glib)
 866        ("zlib" ,zlib)))
 867     (arguments
 868      `(#:configure-flags
 869        ;; XXX This ‘documentation’ is for developers, and fails informatively:
 870        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
 871        (list "-Ddocs=false"
 872              "-Dintrospection=false")))
 873     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
 874     (synopsis "Microsoft Cabinet file manipulation library")
 875     (description
 876      "The libgcab library provides GObject functions to read, write, and modify
 877 Microsoft cabinet (.@dfn{CAB}) files.")
 878     (license (list license:gpl2+        ; tests/testsuite.at
 879                    license:lgpl2.1+)))) ; the rest
 880
 881 (define-public msitools
 882   (package
 883     (name "msitools")
 884     (version "0.98")
 885     (source (origin
 886               (method url-fetch)
 887               (uri (string-append "mirror://gnome/sources/" name "/"
 888                                   version "/" name "-" version ".tar.xz"))
 889               (sha256
 890                (base32
 891                 "19wb3n3nwkpc6bjr0q3f1znaxsfaqgjbdxxnbx8ic8bb5b49hwac"))))
 892     (build-system gnu-build-system)
 893     (native-inputs
 894      `(("pkg-config" ,pkg-config)))
 895     (inputs
 896      `(("gcab" ,gcab)
 897        ("glib" ,glib)
 898        ("libgsf" ,libgsf)
 899        ("libxml2" ,libxml2)
 900        ("uuid" ,util-linux)))
 901     (home-page "https://wiki.gnome.org/msitools")
 902     (synopsis "Windows Installer file manipulation tool")
 903     (description
 904      "msitools is a collection of command-line tools to inspect, extract, build,
 905 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
 906 for packaging and deployment of cross-compiled Windows applications.")
 907     (license license:lgpl2.1+)))
 908
 909 (define-public libostree
 910   (package
 911     (name "libostree")
 912     (version "2018.9.1")
 913     (source (origin
 914               (method url-fetch)
 915               (uri (string-append
 916                     "https://github.com/ostreedev/ostree/releases/download/v"
 917                     (version-major+minor version) "/libostree-" version ".tar.xz"))
 918               (sha256
 919                (base32
 920                 "01mygpkbl9sk2vr3hjbpih6qlg8lwx0q5lklm09f7jfwfpnwyqzj"))))
 921     (build-system gnu-build-system)
 922     (arguments
 923      '(#:phases
 924        (modify-phases %standard-phases
 925          (add-before 'check 'pre-check
 926            (lambda _
 927              ;; Don't try to use the non-existing '/var/tmp' as test
 928              ;; directory.
 929              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
 930              #t)))
 931        ;; XXX: fails with:
 932        ;;     tap-driver.sh: internal error getting exit status
 933        ;;     tap-driver.sh: fatal: I/O or internal error
 934        #:tests? #f))
 935     (native-inputs
 936      `(("attr" ,attr)                   ; for tests
 937        ("bison" ,bison)
 938        ("glib:bin" ,glib "bin")          ; for 'glib-mkenums'
 939        ("gobject-introspection" ,gobject-introspection)
 940        ("pkg-config" ,pkg-config)
 941        ("xsltproc" ,libxslt)))
 942     (inputs
 943      `(("avahi" ,avahi)
 944        ("docbook-xml" ,docbook-xml-4.2)
 945        ("docbook-xsl" ,docbook-xsl)
 946        ("e2fsprogs" ,e2fsprogs)
 947        ("fuse" ,fuse)
 948        ("glib" ,glib)
 949        ("gpgme" ,gpgme)
 950        ("libarchive" ,libarchive)
 951        ("libsoup" ,libsoup)
 952        ("nettle" ,nettle)               ; required by 'libarchive.la'
 953        ("util-linux" ,util-linux)))
 954     (home-page "https://ostree.readthedocs.io/en/latest/")
 955     (synopsis "Operating system and container binary deployment and upgrades")
 956     (description
 957      "@code{libostree} is both a shared library and suite of command line
 958 tools that combines a \"git-like\" model for committing and downloading
 959 bootable filesystem trees, along with a layer for deploying them and managing
 960 the bootloader configuration.")
 961     (license license:lgpl2.0+)))
 962
 963 (define-public flatpak
 964   (package
 965    (name "flatpak")
 966    (version "1.1.0")
 967    (source
 968     (origin
 969      (method url-fetch)
 970      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
 971                          version "/flatpak-" version ".tar.xz"))
 972      (sha256
 973       (base32
 974        "0bkjwh49kajyd78vdh0g9arb352a7rccaifas9zxa78phhja2v2p"))))
 975    (build-system gnu-build-system)
 976    (arguments
 977     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
 978       #:configure-flags (list
 979                          "--enable-documentation=no" ;; FIXME
 980                          "--enable-system-helper=no"
 981                          "--localstatedir=/var"
 982                          (string-append "--with-system-bubblewrap="
 983                                         (assoc-ref %build-inputs "bubblewrap")
 984                                         "/bin/bwrap"))))
 985    (native-inputs `(("bison" ,bison)
 986                     ("gettext" ,gnu-gettext)
 987                     ("glib:bin" ,glib "bin") ; for glib-mkenums + gdbus-codegen
 988                     ("gobject-introspection" ,gobject-introspection)
 989                     ("libcap" ,libcap)
 990                     ("pkg-config" ,pkg-config)))
 991    (inputs `(("appstream-glib" ,appstream-glib)
 992              ("bubblewrap" ,bubblewrap)
 993              ("gdk-pixbuf" ,gdk-pixbuf)
 994              ("gpgme" ,gpgme)
 995              ("json-glib" ,json-glib)
 996              ("libarchive" ,libarchive)
 997              ("libostree" ,libostree)
 998              ("libseccomp" ,libseccomp)
 999              ("libsoup" ,libsoup)
1000              ("libxau" ,libxau)
1001              ("libxml2" ,libxml2)
1002              ("nettle" ,nettle)
1003              ("util-linux" ,util-linux)))
1004    (home-page "https://flatpak.org")
1005    (synopsis "System for building, distributing, and running sandboxed desktop
1006 applications")
1007    (description "Flatpak is a system for building, distributing, and running
1008 sandboxed desktop applications on GNU/Linux.")
1009    (license license:lgpl2.1+)))