gnu/packages/maths.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
   3 ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
   4 ;;;
   5 ;;; This file is part of GNU Guix.
   6 ;;;
   7 ;;; GNU Guix is free software; you can redistribute it and/or modify it
   8 ;;; under the terms of the GNU General Public License as published by
   9 ;;; the Free Software Foundation; either version 3 of the License, or (at
  10 ;;; your option) any later version.
  11 ;;;
  12 ;;; GNU Guix is distributed in the hope that it will be useful, but
  13 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  14 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  15 ;;; GNU General Public License for more details.
  16 ;;;
  17 ;;; You should have received a copy of the GNU General Public License
  18 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  19
  20 (define-module (gnu packages maths)
  21   #:use-module (gnu packages)
  22   #:use-module ((guix licenses)
  23                 #:renamer (symbol-prefix-proc 'license:))
  24   #:use-module (guix packages)
  25   #:use-module (guix download)
  26   #:use-module (guix build-system cmake)
  27   #:use-module (guix build-system gnu)
  28   #:use-module (gnu packages compression)
  29   #:use-module (gnu packages fontutils)
  30   #:use-module ((gnu packages gettext)
  31                 #:renamer (symbol-prefix-proc 'gnu:))
  32   #:use-module (gnu packages gcc)
  33   #:use-module (gnu packages gtk)
  34   #:use-module (gnu packages multiprecision)
  35   #:use-module (gnu packages perl)
  36   #:use-module (gnu packages pkg-config)
  37   #:use-module (gnu packages python)
  38   #:use-module (gnu packages readline)
  39   #:use-module (gnu packages xml))
  40
  41 (define-public units
  42   (package
  43    (name "units")
  44    (version "2.02")
  45    (source (origin
  46             (method url-fetch)
  47             (uri (string-append "mirror://gnu/units/units-" version
  48                                 ".tar.gz"))
  49             (sha256 (base32
  50                      "16jfji9g1zc99agd5dcinajinhcxr4dgq2lrbc9md69ir5qgld1b"))))
  51    (build-system gnu-build-system)
  52    (synopsis "Conversion between thousands of scales")
  53    (description
  54     "Units is a program for converting measured quantities between units of
  55 measure.  It can handle scale changes through adaptive usage of standard
  56 scale prefixes (i.e. micro-, kilo-, etc.).  It can also handle nonlinear
  57 conversions such as Fahrenheit to Celcius.  Its interpreter is powerful
  58 enough to be used effectively as a scientific calculator.")
  59    (license license:gpl3+)
  60    (home-page "http://www.gnu.org/software/units/")))
  61
  62 (define-public gsl
  63   (package
  64     (name "gsl")
  65     (version "1.16")
  66     (source
  67      (origin
  68       (method url-fetch)
  69       (uri (string-append "mirror://gnu/gsl/gsl-"
  70                           version ".tar.gz"))
  71       (sha256
  72        (base32
  73         "0lrgipi0z6559jqh82yx8n4xgnxkhzj46v96dl77hahdp58jzg3k"))))
  74     (build-system gnu-build-system)
  75     (arguments
  76      `(#:parallel-tests? #f
  77        #:phases
  78         (alist-replace
  79          'configure
  80          (lambda* (#:key target system outputs #:allow-other-keys #:rest args)
  81            (let ((configure (assoc-ref %standard-phases 'configure)))
  82              ;; disable numerically unstable test on i686, see thread at
  83              ;; http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html
  84              (if (string=? (or target system) "i686-linux")
  85                  (substitute* "ode-initval2/Makefile.in"
  86                    (("TESTS = \\$\\(check_PROGRAMS\\)") "TESTS =")))
  87              (apply configure args)))
  88          %standard-phases)))
  89     (home-page "http://www.gnu.org/software/gsl/")
  90     (synopsis "Numerical library for C and C++")
  91     (description
  92      "The GNU Scientific Library is a library for numerical analysis in C
  93 and C++.  It includes a wide range of mathematical routines, with over 1000
  94 functions in total.  Subject areas covered by the library include:
  95 differential equations, linear algebra, Fast Fourier Transforms and random
  96 numbers.")
  97     (license license:gpl3+)))
  98
  99 (define-public glpk
 100   (package
 101     (name "glpk")
 102     (version "4.52.1")
 103     (source
 104      (origin
 105       (method url-fetch)
 106       (uri (string-append "mirror://gnu/glpk/glpk-"
 107                           version ".tar.gz"))
 108       (sha256
 109        (base32
 110         "0nz9ngmx23c8gbjr8l8ygnfaanxj2mwbl8awpg630bgrkxdnhc9j"))))
 111     (build-system gnu-build-system)
 112     (inputs
 113      `(("gmp" ,gmp)))
 114     (arguments
 115      `(#:configure-flags '("--with-gmp")))
 116     (home-page "http://www.gnu.org/software/glpk/")
 117     (synopsis "NU Linear Programming Kit, supporting the MathProg language")
 118     (description
 119      "GLPK is a C library for solving large-scale linear programming (LP),
 120 mixed integer programming (MIP), and other related problems.  It supports the
 121 GNU MathProg modeling language, a subset of the AMPL language, and features a
 122 translator for the language.  In addition to the C library, a stand-alone
 123 LP/MIP solver is included in the package.")
 124     (license license:gpl3+)))
 125
 126 (define-public pspp
 127   (package
 128     (name "pspp")
 129     (version "0.8.1")
 130     (source
 131      (origin
 132       (method url-fetch)
 133       (uri (string-append "mirror://gnu/pspp/pspp-"
 134                           version ".tar.gz"))
 135       (sha256
 136        (base32
 137         "0qhxsdbwxd3cn1shc13wxvx2lg32lp4z6sz24kv3jz7p5xfi8j7x"))
 138       (patches (list (search-patch "pspp-tests.patch")))))
 139     (build-system gnu-build-system)
 140     (inputs
 141      `(("cairo" ,cairo)
 142        ("fontconfig" ,fontconfig)
 143        ("gettext" ,gnu:gettext)
 144        ("gsl" ,gsl)
 145        ("libxml2" ,libxml2)
 146        ("pango" ,pango)
 147        ("readline" ,readline)
 148        ("zlib" ,zlib)))
 149     (native-inputs
 150      `(("perl" ,perl)
 151        ("pkg-config" ,pkg-config)))
 152     (arguments
 153      `(#:configure-flags
 154        `("--without-gui"))) ; FIXME: package missing dependencies
 155     (home-page "http://www.gnu.org/software/pspp/")
 156     (synopsis "Statistical analysis")
 157     (description
 158      "PSPP is a statistical analysis program.  It can perform descriptive
 159 statistics, T-tests, linear regression and non-parametric tests.  It features
 160 both a graphical interface as well as command-line input. PSPP is designed to
 161 interoperate with Gnumeric, LibreOffice and OpenOffice.  Data can be imported
 162 from spreadsheets, text files and database sources and it can be output in
 163 text, Postscript, PDF or HTML.")
 164     (license license:gpl3+)))
 165
 166 (define-public lapack
 167   (package
 168     (name "lapack")
 169     (version "3.4.2")
 170     (source
 171      (origin
 172       (method url-fetch)
 173       (uri (string-append "http://www.netlib.org/lapack/lapack-"
 174                           version ".tgz"))
 175       (sha256
 176        (base32
 177         "1w7sf8888m7fi2kyx1fzgbm22193l8c2d53m8q1ibhvfy6m5v9k0"))
 178       (snippet
 179        ;; Remove non-free files.
 180        ;; See <http://icl.cs.utk.edu/lapack-forum/archives/lapack/msg01383.html>.
 181        '(for-each (lambda (file)
 182                     (format #t "removing '~a'~%" file)
 183                     (delete-file file))
 184                   '("lapacke/example/example_DGESV_rowmajor.c"
 185                     "lapacke/example/example_ZGESV_rowmajor.c"
 186                     "DOCS/psfig.tex")))))
 187     (build-system cmake-build-system)
 188     (home-page "http://www.netlib.org/lapack/")
 189     (inputs `(("fortran" ,gfortran-4.8)
 190               ("python" ,python-2)))
 191     (arguments
 192      `(#:modules ((guix build cmake-build-system)
 193                   (guix build utils)
 194                   (srfi srfi-1))
 195        #:phases (alist-cons-before
 196                  'check 'patch-python
 197                  (lambda* (#:key inputs #:allow-other-keys)
 198                    (let ((python (assoc-ref inputs "python")))
 199                      (substitute* "lapack_testing.py"
 200                        (("/usr/bin/env python") python))))
 201                  %standard-phases)))
 202     (synopsis "Library for numerical linear algebra")
 203     (description
 204      "LAPACK is a Fortran 90 library for solving the most commonly occurring
 205 problems in numerical linear algebra.")
 206     (license (license:bsd-style "file://LICENSE"
 207                                 "See LICENSE in the distribution."))))