1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
3 ;;; Copyright © 2017, 2018 Roel Janssen <roel@gnu.org>
4 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
5 ;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
6 ;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
7 ;;; Copyright © 2018 Sahithi Yarlagadda <sahi@swecha.net>
8 ;;; Copyright © 2018 Sandeep Subramanian <sandeepsubramanian94@gmail.com>
9 ;;; Copyright © 2018 Charlie Ritter <chewzeirta@posteo.net>
10 ;;; Copyright © 2018 Konrad Hinsen <konrad.hinsen@fastmail.net>
11 ;;; Copyright © 2018 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
12 ;;; Copyright © 2018 Laura Lazzati <laura.lazzati.15@gmail.com>
14 ;;; This file is part of GNU Guix.
16 ;;; GNU Guix is free software; you can redistribute it and/or modify it
17 ;;; under the terms of the GNU General Public License as published by
18 ;;; the Free Software Foundation; either version 3 of the License, or (at
19 ;;; your option) any later version.
21 ;;; GNU Guix is distributed in the hope that it will be useful, but
22 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
23 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
24 ;;; GNU General Public License for more details.
26 ;;; You should have received a copy of the GNU General Public License
27 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
29 (define-module (gnu packages cran)
30 #:use-module ((guix licenses) #:prefix license:)
31 #:use-module (guix packages)
32 #:use-module (guix download)
33 #:use-module (guix utils)
34 #:use-module (guix build-system r)
35 #:use-module (gnu packages base)
36 #:use-module (gnu packages compression)
37 #:use-module (gnu packages fontutils)
38 #:use-module (gnu packages gcc)
39 #:use-module (gnu packages gl)
40 #:use-module (gnu packages gnome)
41 #:use-module (gnu packages gtk)
42 #:use-module (gnu packages haskell)
43 #:use-module (gnu packages image)
44 #:use-module (gnu packages machine-learning)
45 #:use-module (gnu packages maths)
46 #:use-module (gnu packages mpi)
47 #:use-module (gnu packages perl)
48 #:use-module (gnu packages pkg-config)
49 #:use-module (gnu packages python)
50 #:use-module (gnu packages statistics)
51 #:use-module (gnu packages tls)
52 #:use-module (gnu packages web)
53 #:use-module (gnu packages xorg))
55 (define-public r-clipr
62 (uri (cran-uri "clipr" version))
65 "061x84ildc7g1p91yw5iyj8lpqdf4hqv36as85lw8c6qv9ywbsqv"))))
66 (build-system r-build-system)
67 (home-page "https://github.com/mdlincoln/clipr")
68 (synopsis "Read and write from the system clipboard")
70 "This package provides simple utility functions to read from and write to
71 the system clipboards.")
72 (license license:gpl3)))
74 (define-public r-tidyverse
81 (uri (cran-uri "tidyverse" version))
84 "0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd"))))
85 (build-system r-build-system)
87 `(("r-broom" ,r-broom)
89 ("r-crayon" ,r-crayon)
90 ("r-dbplyr" ,r-dbplyr)
92 ("r-forcats" ,r-forcats)
93 ("r-ggplot2" ,r-ggplot2)
97 ("r-jsonlite" ,r-jsonlite)
98 ("r-lubridate" ,r-lubridate)
99 ("r-magrittr" ,r-magrittr)
100 ("r-modelr" ,r-modelr)
103 ("r-readxl" ,r-readxl)
104 ("r-reprex" ,r-reprex)
106 ("r-rstudioapi" ,r-rstudioapi)
108 ("r-stringr" ,r-stringr)
109 ("r-tibble" ,r-tibble)
112 (home-page "https://tidyverse.tidyverse.org")
113 (synopsis "Install and load packages from the \"Tidyverse\"")
115 "The @code{tidyverse} is a set of packages that work in harmony because
116 they share common data representations and API design. This package is
117 designed to make it easy to install and load multiple tidyverse packages in a
119 (license license:gpl3)))
121 (define-public r-rvest
128 (uri (cran-uri "rvest" version))
131 "04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"))))
132 (build-system r-build-system)
135 ("r-magrittr" ,r-magrittr)
136 ("r-selectr" ,r-selectr)
138 (home-page "https://github.com/hadley/rvest")
139 (synopsis "Simple web scraping for R")
141 "@code{r-rvest} helps you scrape information from web pages. It is
142 designed to work with @code{magrittr} to make it easy to express common web
143 scraping tasks, inspired by libraries like @code{BeautifulSoup}.")
144 (license license:gpl3)))
146 (define-public r-selectr
153 (uri (cran-uri "selectr" version))
156 "1jp27rxks4w29l47k42869hp8hnkzq2rnvsqbr44wd19fqb2zm4b"))))
157 (build-system r-build-system)
159 `(("r-stringr" ,r-stringr)
161 (home-page "https://sjp.co.nz/projects/selectr/")
162 (synopsis "Translate CSS selectors to XPath expressions")
164 "@code{r-selectr} translates a CSS3 selector into an equivalent XPath
165 expression. This allows you to use CSS selectors when working with the XML
166 package as it can only evaluate XPath expressions. Also provided are
167 convenience functions useful for using CSS selectors on XML nodes. This
168 package is a port of the Python package @code{cssselect}.")
169 (license license:bsd-3)))
171 (define-public r-reprex
178 (uri (cran-uri "reprex" version))
181 "1ws5gds453xgfili87r35rz1wn2i7jbqissq98csbiddpkgls8sx"))))
182 (build-system r-build-system)
184 `(("r-callr" ,r-callr)
188 ("r-rmarkdown" ,r-rmarkdown)
189 ("r-whisker" ,r-whisker)
190 ("r-withr" ,r-withr)))
191 (home-page "https://github.com/tidyverse/reprex")
192 (synopsis "Prepare reproducible R code examples for sharing")
194 "This package provides a convenience wrapper that uses the
195 @code{rmarkdown} package to render small snippets of code to target formats
196 that include both code and output. The goal is to encourage the sharing of
197 small, reproducible, and runnable examples on code-oriented websites or email.
198 @code{reprex} also extracts clean, runnable R code from various common formats,
199 such as copy/paste from an R session.")
200 (license license:expat)))
202 (define-public r-callr
209 (uri (cran-uri "callr" version))
212 "1rxbxy6kn7dj90z9hpppr9cnpvnxzknba2dwrdp0lrk5dh462qz3"))))
213 (build-system r-build-system)
215 `(("r-base64enc" ,r-base64enc)
217 ("r-processx" ,r-processx)))
218 (home-page "https://github.com/r-lib/callr#readme")
219 (synopsis "Call R from R")
221 "It is sometimes useful to perform a computation in a separate R process,
222 without affecting the current R process at all. This packages does exactly
224 (license license:expat)))
226 (define-public r-readxl
233 (uri (cran-uri "readxl" version))
236 "05ii8knrg4jji6h7bv6bfpn279b6x52yrskdx5rv7b0hcpy22gdn"))))
237 (build-system r-build-system)
239 `(("r-cellranger" ,r-cellranger)
241 ("r-tibble" ,r-tibble)))
242 (home-page "https://readxl.tidyverse.org")
243 (synopsis "Read Excel files")
245 "This package lets you import Excel files into R. It supports
246 @file{.xls} via the embedded @code{libxls} C library and @file{.xlsx} via
247 the embedded @code{RapidXML} C++ library.")
248 ;; XXX: This package bundles a copy of 'libxsl' which is BSD-2 and
249 ;; 'rapidxml' which is Boost.
250 (license (list license:gpl3 license:bsd-2 license:boost1.0))))
252 (define-public r-modelr
259 (uri (cran-uri "modelr" version))
262 "09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a"))))
263 (build-system r-build-system)
265 `(("r-broom" ,r-broom)
267 ("r-lazyeval" ,r-lazyeval)
268 ("r-magrittr" ,r-magrittr)
270 ("r-tibble" ,r-tibble)
271 ("r-tidyr" ,r-tidyr)))
272 (home-page "https://github.com/tidyverse/modelr")
273 (synopsis "Helper functions for modelling in pipelines")
275 "Functions for modelling that help you seamlessly integrate modelling
276 into a pipeline of data manipulation and visualisation.")
277 (license license:gpl3)))
279 (define-public r-haven
286 (uri (cran-uri "haven" version))
289 "0pp8xjf5lzqg1wr8cwxj4njx99vxwlflwjrd7jvyzwlfpwh7n1qa"))))
290 (build-system r-build-system)
294 `(("r-forcats" ,r-forcats)
298 ("r-tibble" ,r-tibble)))
299 (home-page "https://haven.tidyverse.org")
300 (synopsis "Import and Export 'SPSS', 'Stata' and 'SAS' Files")
302 "This package lets you mport foreign statistical formats into R via the
303 embedded @url{https://github.com/WizardMac/ReadStat,ReadStat} C library.")
304 (license license:expat)))
306 (define-public r-amap
312 (uri (cran-uri "amap" version))
315 "1qnl2x98x64iaipkx5126rsddq2sx5ml43h75xyiyn30yvbmlxyk"))))
316 (build-system r-build-system)
318 `(("gfortran" ,gfortran)))
319 (home-page "http://mulcyber.toulouse.inra.fr/projects/amap/")
320 (synopsis "Another multidimensional analysis package")
321 (description "This package provides tools for clustering and principal
322 component analysis (with robust methods, and parallelized functions).")
323 (license license:gpl2+)))
332 (uri (cran-uri "ape" version))
335 "05b4yka5cirdgxd4d7iiaqvr428pk3j6n9q6dvg5j38kdj2h5sr7"))))
336 (build-system r-build-system)
338 `(("r-lattice" ,r-lattice)
341 (home-page "http://ape-package.ird.fr/")
342 (synopsis "Analyses of phylogenetics and evolution")
344 "This package provides functions for reading, writing, plotting, and
345 manipulating phylogenetic trees, analyses of comparative data in a
346 phylogenetic framework, ancestral character analyses, analyses of
347 diversification and macroevolution, computing distances from DNA sequences,
348 and several other tools.")
349 (license license:gpl2+)))
351 (define-public r-abbyyr
358 (uri (cran-uri "abbyyR" version))
361 "1jh1c1ad6mgw7brdh2isnza1qpjlfxnqr7jl76yd93axyfl76xjx"))))
362 (properties `((upstream-name . "abbyyR")))
363 (build-system r-build-system)
368 ("r-progress" ,r-progress)
371 (home-page "https://github.com/soodoku/abbyyR")
372 (synopsis "Access to Abbyy Optical Character Recognition (OCR) API")
374 "This package provides tools to get text from images of text using Abbyy
375 Cloud Optical Character Recognition (OCR) API. With abbyyyR, one can easily
376 OCR images, barcodes, forms, documents with machine readable zones, e.g.
377 passports and get the results in a variety of formats including plain text and
378 XML. To learn more about the Abbyy OCR API, see @url{http://ocrsdk.com/}.")
379 (license license:expat)))
381 (define-public r-colorspace
383 (name "r-colorspace")
388 (uri (cran-uri "colorspace" version))
390 (base32 "0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"))))
391 (build-system r-build-system)
392 (home-page "https://cran.r-project.org/web/packages/colorspace")
393 (synopsis "Color space manipulation")
395 "This package carries out a mapping between assorted color spaces
396 including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar
397 CIELAB. Qualitative, sequential, and diverging color palettes based on HCL
398 colors are provided.")
399 (license license:bsd-3)))
401 (define-public r-glue
408 (uri (cran-uri "glue" version))
411 "1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq"))))
412 (build-system r-build-system)
413 (home-page "https://github.com/tidyverse/glue")
414 (synopsis "Interpreted string literals")
416 "This package provides an implementation of interpreted string literals,
417 inspired by Python's Literal String Interpolation (PEP-0498) and
418 Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.")
419 (license license:expat)))
421 (define-public r-pastecs
427 (uri (cran-uri "pastecs" version))
430 "0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"))))
431 (build-system r-build-system)
433 `(("r-boot" ,r-boot)))
434 (home-page "http://www.sciviews.org/pastecs")
435 (synopsis "Analysis of space-time ecological series")
437 "This package provides functions for regulation, decomposition and analysis
438 of space-time series. The @code{pastecs} library is a PNEC-Art4 and IFREMER
439 initiative to bring PASSTEC 2000 functionalities to R.")
440 (license license:gpl2+)))
442 (define-public r-plogr
449 (uri (cran-uri "plogr" version))
452 "0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"))))
453 (build-system r-build-system)
454 (home-page "https://github.com/krlmlr/plogr")
455 (synopsis "R bindings for the plog C++ logging library")
457 "This package provides the header files for a stripped-down version of
458 the plog header-only C++ logging library, and a method to log to R's standard
460 (license license:expat)))
469 (uri (cran-uri "pls" version))
472 "0xaqqgmdvfh7g7v1m4bcwjqzph68b9cq3bn4kjisfsadl54i5p2x"))))
473 (build-system r-build-system)
474 (home-page "http://mevik.net/work/software/pls.html")
475 (synopsis "Partial Least Squares and Principal Component Regression")
477 "The pls package implements multivariate regression methods: Partial Least
478 Squares Regression (@dfn{PLSR}), Principal Component Regression (@dfn{PCR}), and
479 Canonical Powered Partial Least Squares (@dfn{CPPLS}). It supports:
482 @item several algorithms: the traditional orthogonal scores (@dfn{NIPALS}) PLS
483 algorithm, kernel PLS, wide kernel PLS, Simpls, and PCR through @code{svd}
484 @item multi-response models (or @dfn{PLS2})
485 @item flexible cross-validation
486 @item Jackknife variance estimates of regression coefficients
487 @item extensive and flexible plots: scores, loadings, predictions, coefficients,
488 (R)MSEP, R², and correlation loadings
489 @item formula interface, modelled after @code{lm()}, with methods for predict,
490 print, summary, plot, update, etc.
491 @item extraction functions for coefficients, scores, and loadings
492 @item MSEP, RMSEP, and R² estimates
493 @item multiplicative scatter correction (@dfn{MSC})
495 (license license:gpl2)))
504 (uri (cran-uri "ps" version))
506 (base32 "1zxylcb0nr4qb5v6j199mc2pfgf2bpf00jrw47jajmv59qb0fwmx"))))
507 (build-system r-build-system)
508 (home-page "http://ps.r-lib.org")
509 (synopsis "List, query, and manipulate system processes")
511 "The ps package implements an API to list, query, and manipulate system
512 processes. Most of its code is based on the @code{psutil} Python package.")
513 (license license:bsd-3)))
515 (define-public r-pkgbuild
522 (uri (cran-uri "pkgbuild" version))
525 "1i1rrax7x7r2bplig5cfc50lx85jc4n9a3qmvbdviaj22wr2lghs"))))
526 (build-system r-build-system)
528 `(("r-callr" ,r-callr)
530 ("r-crayon" ,r-crayon)
532 ("r-prettyunits" ,r-prettyunits)
534 ("r-rprojroot" ,r-rprojroot)
535 ("r-withr" ,r-withr)))
536 (home-page "https://github.com/r-pkgs/pkgbuild")
537 (synopsis "Find tools needed to build R packages")
539 "This package provides functions used to build R packages. It locates
540 compilers needed to build R packages on various platforms and ensures the PATH
541 is configured appropriately so R can use them.")
542 (license license:gpl3)))
544 (define-public r-pkgload
551 (uri (cran-uri "pkgload" version))
554 "0z7jvharafahi2gv5547mk1n499isjzw06kfwymmxc0gd575d1ii"))))
555 (build-system r-build-system)
558 ("r-pkgbuild" ,r-pkgbuild)
560 ("r-rprojroot" ,r-rprojroot)
561 ("r-rstudioapi" ,r-rstudioapi)
562 ("r-withr" ,r-withr)))
563 (home-page "https://github.com/r-lib/pkgload")
564 (synopsis "Simulate package installation and attach")
566 "This package simulates the process of installing a package and then
567 attaching it. This is a key part of the @code{devtools} package as it allows
568 you to rapidly iterate while developing a package.")
569 (license license:gpl3)))
571 (define-public r-rcpp
578 (uri (cran-uri "Rcpp" version))
580 (base32 "1hlbw4k79q9ich4w27b01gsvwrsnrflii8zjlcmgfzm1vpq8ndxp"))))
581 (build-system r-build-system)
583 `(("r-knitr" ,r-knitr))) ; for vignettes
584 (home-page "http://www.rcpp.org")
585 (synopsis "Seamless R and C++ integration")
587 "The Rcpp package provides R functions as well as C++ classes which offer
588 a seamless integration of R and C++. Many R data types and objects can be
589 mapped back and forth to C++ equivalents which facilitates both writing of new
590 code as well as easier integration of third-party libraries. Documentation
591 about Rcpp is provided by several vignettes included in this package, via the
592 'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel
593 and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
594 'citation(\"Rcpp\")' for details on these last two.")
595 (license license:gpl2+)))
597 (define-public r-bindr
604 (uri (cran-uri "bindr" version))
607 "1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"))))
608 (build-system r-build-system)
609 (home-page "https://github.com/krlmlr/bindr")
610 (synopsis "Parametrized active bindings")
612 "This package provides a simple interface for creating active bindings
613 where the bound function accepts additional arguments.")
614 (license license:expat)))
616 (define-public r-bindrcpp
623 (uri (cran-uri "bindrcpp" version))
626 "0rz4ibjdjsxl99ff3ha79z7cnjmilx4rx58fk9kk7ld9xc4hf4s8"))))
627 (build-system r-build-system)
629 `(("r-bindr" ,r-bindr)
632 (home-page "https://github.com/krlmlr/bindrcpp")
633 (synopsis "Rcpp interface to active bindings")
635 "This package provides an easy way to fill an environment with active
636 bindings that call a C++ function.")
637 (license license:expat)))
646 (uri (cran-uri "AUC" version))
649 "0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"))))
650 (properties `((upstream-name . "AUC")))
651 (build-system r-build-system)
652 (home-page "https://cran.r-project.org/web/packages/AUC")
653 (synopsis "Compute the area under the curve of selected measures")
655 "This package includes functions to compute the area under the curve of
656 selected measures: the area under the sensitivity curve (AUSEC), the area
657 under the specificity curve (AUSPC), the area under the accuracy
658 curve (AUACC), and the area under the receiver operating characteristic
659 curve (AUROC). The curves can also be visualized. Support for partial areas
661 (license license:gpl2+)))
663 (define-public r-calibrate
670 (uri (cran-uri "calibrate" version))
673 "010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"))))
674 (build-system r-build-system)
676 `(("r-mass" ,r-mass)))
677 (home-page "https://cran.r-project.org/web/packages/calibrate")
678 (synopsis "Calibration of scatterplot and biplot axes")
680 "This is a package for drawing calibrated scales with tick marks
681 on (non-orthogonal) variable vectors in scatterplots and biplots.")
682 (license license:gpl2)))
684 (define-public r-shape
691 (uri (cran-uri "shape" version))
694 "0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"))))
695 (build-system r-build-system)
696 (home-page "https://cran.r-project.org/web/packages/shape")
697 (synopsis "Functions for plotting graphical shapes")
699 "This package provides functions for plotting graphical shapes such as
700 ellipses, circles, cylinders, arrows, ...")
701 (license license:gpl3+)))
703 (define-public r-globaloptions
705 (name "r-globaloptions")
710 (uri (cran-uri "GlobalOptions" version))
713 "1wlyqz1yhmhjwslrd7q69jbd9vsbjkjfc01g60kl3cdpyr8hlyjn"))))
714 (properties `((upstream-name . "GlobalOptions")))
715 (build-system r-build-system)
716 (home-page "https://github.com/jokergoo/GlobalOptions")
717 (synopsis "Generate functions to get or set global options")
719 "This package provides more controls on the option values such as
720 validation and filtering on the values, making options invisible or private.")
721 (license license:gpl2+)))
723 (define-public r-circlize
730 (uri (cran-uri "circlize" version))
733 "1l28maiqi549z191srncxgabx5fnvf0lld7smzwfd3vr5cx8nqww"))))
734 (build-system r-build-system)
736 `(("r-colorspace" ,r-colorspace)
737 ("r-globaloptions" ,r-globaloptions)
738 ("r-shape" ,r-shape)))
739 (home-page "https://github.com/jokergoo/circlize")
740 (synopsis "Circular visualization")
742 "Circular layout is an efficient way to visualise huge amounts of
743 information. This package provides an implementation of circular layout
744 generation in R as well as an enhancement of available software. Its
745 flexibility is based on the usage of low-level graphics functions such that
746 self-defined high-level graphics can be easily implemented by users for
747 specific purposes. Together with the seamless connection between the powerful
748 computational and visual environment in R, it gives users more convenience and
749 freedom to design figures for better understanding complex patterns behind
750 multi-dimensional data.")
751 (license license:gpl2+)))
753 (define-public r-powerlaw
760 (uri (cran-uri "poweRlaw" version))
763 "04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"))))
764 (properties `((upstream-name . "poweRlaw")))
765 (build-system r-build-system)
767 `(("r-vgam" ,r-vgam)))
768 (home-page "https://github.com/csgillespie/poweRlaw")
769 (synopsis "Tools for the analysis of heavy tailed distributions")
771 "This package provides an implementation of maximum likelihood estimators
772 for a variety of heavy tailed distributions, including both the discrete and
773 continuous power law distributions. Additionally, a goodness-of-fit based
774 approach is used to estimate the lower cut-off for the scaling region.")
775 ;; Any of these GPL versions.
776 (license (list license:gpl2 license:gpl3))))
778 (define-public r-compare
785 (uri (cran-uri "compare" version))
788 "0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"))))
789 (build-system r-build-system)
790 (home-page "https://cran.r-project.org/web/packages/compare")
791 (synopsis "Comparing objects for differences")
793 "This package provides functions to compare a model object to a
794 comparison object. If the objects are not identical, the functions can be
795 instructed to explore various modifications of the objects (e.g., sorting
796 rows, dropping names) to see if the modified versions are identical.")
797 (license license:gpl2+)))
799 (define-public r-dendextend
801 (name "r-dendextend")
806 (uri (cran-uri "dendextend" version))
809 "1jiani6zwfajky2vafvay2hq158nh99rdrk3j00lycspds9v35fd"))))
810 (build-system r-build-system)
813 ("r-ggplot2" ,r-ggplot2)
814 ("r-magrittr" ,r-magrittr)
815 ("r-viridis" ,r-viridis)
816 ("r-whisker" ,r-whisker)))
817 (home-page "https://cran.r-project.org/web/packages/dendextend")
818 (synopsis "Extending 'dendrogram' functionality in R")
820 "This package offers a set of functions for extending @code{dendrogram}
821 objects in R, letting you visualize and compare trees of hierarchical
822 clusterings. You can adjust a tree's graphical parameters (the color, size,
823 type, etc of its branches, nodes and labels) and visually and statistically
824 compare different dendrograms to one another.")
825 ;; Any of these versions
826 (license (list license:gpl2 license:gpl3))))
828 (define-public r-getoptlong
830 (name "r-getoptlong")
835 (uri (cran-uri "GetoptLong" version))
838 "1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr"))))
839 (properties `((upstream-name . "GetoptLong")))
840 (build-system r-build-system)
844 `(("r-globaloptions" ,r-globaloptions)
845 ("r-rjson" ,r-rjson)))
846 (home-page "https://github.com/jokergoo/GetoptLong")
847 (synopsis "Parsing command-line arguments and variable interpolation")
849 "This is yet another command-line argument parser which wraps the
850 powerful Perl module @code{Getopt::Long} and with some adaptation for easier
851 use in R. It also provides a simple way for variable interpolation in R.")
852 (license license:gpl2+)))
854 (define-public r-fastmatch
861 (uri (cran-uri "fastmatch" version))
864 "0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"))))
865 (build-system r-build-system)
866 (home-page "http://www.rforge.net/fastmatch")
867 (synopsis "Fast match function")
869 "This package provides a fast @code{match} replacement for cases that
870 require repeated look-ups. It is slightly faster that R's built-in
871 @code{match} function on first match against a table, but extremely fast on
872 any subsequent lookup as it keeps the hash table in memory.")
873 (license license:gpl2)))
882 (uri (cran-uri "ff" version))
885 "1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw"))))
886 (build-system r-build-system)
887 (propagated-inputs `(("r-bit" ,r-bit)))
888 (home-page "http://ff.r-forge.r-project.org/")
889 (synopsis "Memory-efficient storage of large data on disk and access functions")
891 "This package provides data structures that are stored on disk but
892 behave (almost) as if they were in RAM by transparently mapping only a section
894 ;; error Architecture not supported.
895 (supported-systems (delete "aarch64-linux" %supported-systems))
896 (license license:gpl2)))
898 (define-public r-ffbase
905 (uri (cran-uri "ffbase" version))
908 "04kxx2f3f0743c5nvpb7x1x0pcd220dazpd5ag1pidxbz3xa85nw"))))
909 (build-system r-build-system)
912 ("r-fastmatch" ,r-fastmatch)
914 (home-page "http://github.com/edwindj/ffbase")
915 (synopsis "Basic statistical functions for package 'ff'")
917 "This package extends the out of memory vectors of @code{ff} with
918 statistical functions and other utilities to ease their usage.")
919 (license license:gpl3)))
921 (define-public r-prettyunits
923 (name "r-prettyunits")
928 (uri (cran-uri "prettyunits" version))
931 "0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"))))
932 (build-system r-build-system)
934 `(("r-assertthat" ,r-assertthat)
935 ("r-magrittr" ,r-magrittr)))
936 (home-page "https://github.com/gaborcsardi/prettyunits")
937 (synopsis "Pretty, human readable formatting of quantities")
939 "This package provides tools for pretty, human readable formatting of
941 (license license:expat)))
943 (define-public r-reshape
950 (uri (cran-uri "reshape" version))
953 "0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"))))
954 (build-system r-build-system)
958 (home-page "http://had.co.nz/reshape")
959 (synopsis "Flexibly reshape data")
961 "Flexibly restructure and aggregate data using just two functions:
962 @code{melt} and @code{cast}. This package provides them.")
963 (license license:expat)))
965 (define-public r-progress
972 (uri (cran-uri "progress" version))
975 "1rhwm0bdw30z3rvl0bn56xprjl3zrdy7150w4gl4bkvn2d6h9fav"))))
976 (build-system r-build-system)
978 `(("r-crayon" ,r-crayon)
980 ("r-prettyunits" ,r-prettyunits)
982 (home-page "https://github.com/gaborcsardi/progress")
983 (synopsis "Terminal progress bars")
985 "This package provides configurable progress bars. They may include
986 percentage, elapsed time, and/or the estimated completion time. They work in
987 terminals, in Emacs ESS, RStudio, Windows Rgui, and the macOS R.app. The
988 package also provides a C++ API, that works with or without Rcpp.")
989 (license license:expat)))
991 (define-public r-ggally
998 (uri (cran-uri "GGally" version))
1001 "1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"))))
1002 (properties `((upstream-name . "GGally")))
1003 (build-system r-build-system)
1005 `(("libressl" ,libressl)))
1007 `(("r-ggplot2" ,r-ggplot2)
1008 ("r-gtable" ,r-gtable)
1010 ("r-progress" ,r-progress)
1011 ("r-rcolorbrewer" ,r-rcolorbrewer)
1012 ("r-reshape" ,r-reshape)
1013 ("r-rlang" ,r-rlang)))
1014 (home-page "https://ggobi.github.io/ggally")
1015 (synopsis "Extension to ggplot2")
1017 "The R package ggplot2 is a plotting system based on the grammar of
1018 graphics. GGally extends ggplot2 by adding several functions to reduce the
1019 complexity of combining geometric objects with transformed data. Some of
1020 these functions include a pairwise plot matrix, a two group pairwise plot
1021 matrix, a parallel coordinates plot, a survival plot, and several functions to
1023 (license license:gpl2+)))
1025 (define-public r-proxy
1032 (uri (cran-uri "proxy" version))
1035 "0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma"))))
1036 (build-system r-build-system)
1037 (home-page "https://cran.r-project.org/web/packages/proxy")
1038 (synopsis "Distance and similarity measures")
1040 "This package provides an extensible framework for the efficient
1041 calculation of auto- and cross-proximities, along with implementations of the
1042 most popular ones.")
1043 (license license:gpl2)))
1052 (uri (cran-uri "sp" version))
1055 "17xm1ig80p9wc860hm3bgishz6lj9fxgwqidj7rkbk4ap99qp62p"))))
1056 (build-system r-build-system)
1058 `(("r-lattice" ,r-lattice)))
1059 (home-page "https://cran.r-project.org/web/packages/sp")
1060 (synopsis "Classes and methods for spatial data")
1062 "This package provides classes and methods for spatial data; the classes
1063 document where the spatial location information resides, for 2D or 3D data.
1064 Utility functions are provided, e.g. for plotting data as maps, spatial
1065 selection, as well as methods for retrieving coordinates, for subsetting,
1066 print, summary, etc.")
1067 (license license:gpl2+)))
1069 (define-public r-rmtstat
1076 (uri (cran-uri "RMTstat" version))
1079 "1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"))))
1080 (properties `((upstream-name . "RMTstat")))
1081 (build-system r-build-system)
1082 (home-page "https://cran.r-project.org/web/packages/RMTstat")
1083 (synopsis "Distributions, statistics and tests derived from random matrix theory")
1085 "This package provides functions for working with the Tracy-Widom laws
1086 and other distributions related to the eigenvalues of large Wishart
1088 (license license:bsd-3)))
1090 (define-public r-rmpi
1096 (uri (cran-uri "Rmpi" version))
1099 "1b62gs7w1xqadqd7ir41jnxlcf14gcqfxd0915kn9ckdlsdrh0sw"))))
1100 (properties `((upstream-name . "Rmpi")))
1101 (build-system r-build-system)
1103 `(#:configure-flags '("--configure-args=\"--with-Rmpi-type=OPENMPI\"")))
1105 `(("openmpi" ,openmpi)))
1107 `(("pkg-config" ,pkg-config)))
1108 (home-page "http://www.stats.uwo.ca/faculty/yu/Rmpi")
1109 (synopsis "R interface to message-passing interface (MPI)")
1111 "This package provides an interface (wrapper) to MPI APIs. It also
1112 provides an interactive R manager and worker environment.")
1113 (license license:gpl2+)))
1115 (define-public r-lmoments
1122 (uri (cran-uri "Lmoments" version))
1125 "13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"))))
1126 (properties `((upstream-name . "Lmoments")))
1127 (build-system r-build-system)
1128 (home-page "http://www.tilastotiede.fi/juha_karvanen.html")
1129 (synopsis "L-moments and quantile mixtures")
1131 "This package contains functions to estimate L-moments and trimmed
1132 L-moments from the data. It also contains functions to estimate the
1133 parameters of the normal polynomial quantile mixture and the Cauchy polynomial
1134 quantile mixture from L-moments and trimmed L-moments.")
1135 (license license:gpl2)))
1137 (define-public r-distillery
1139 (name "r-distillery")
1144 (uri (cran-uri "distillery" version))
1147 "1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"))))
1148 (build-system r-build-system)
1149 (home-page "http://www.ral.ucar.edu/staff/ericg")
1150 (synopsis "Functions for confidence intervals and object information")
1152 "This package provides some very simple method functions for confidence
1153 interval calculation and to distill pertinent information from a potentially
1154 complex object; primarily used in common with the packages extRemes and
1156 (license license:gpl2+)))
1158 (define-public r-extremes
1165 (uri (cran-uri "extRemes" version))
1168 "0cpvcajk9xyy7662nqkyx333vrxpwsc5nmv0bfnhsbgijz5y0hvm"))))
1169 (properties `((upstream-name . "extRemes")))
1170 (build-system r-build-system)
1173 ("r-distillery" ,r-distillery)
1174 ("r-lmoments" ,r-lmoments)))
1175 (home-page "http://www.assessment.ucar.edu/toolkit/")
1176 (synopsis "Extreme value analysis")
1178 "ExtRemes is a suite of functions for carrying out analyses on the
1179 extreme values of a process of interest; be they block maxima over long blocks
1180 or excesses over a high threshold.")
1181 (license license:gpl2+)))
1183 (define-public r-lmtest
1190 (uri (cran-uri "lmtest" version))
1193 "0sym9sm1vl6bbgq01jhz1plxqmgh8hrgrn7rw0mwvsalcn6id7xy"))))
1194 (build-system r-build-system)
1196 `(("r-zoo" ,r-zoo)))
1198 `(("gfortran" ,gfortran)))
1199 (home-page "https://cran.r-project.org/web/packages/lmtest")
1200 (synopsis "Testing linear regression models")
1202 "This package provides a collection of tests, data sets, and examples for
1203 diagnostic checking in linear regression models. Furthermore, some generic
1204 tools for inference in parametric models are provided.")
1205 ;; Either version is okay
1206 (license (list license:gpl2 license:gpl3))))
1208 (define-public r-idr
1214 (uri (cran-uri "idr" version))
1217 "05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"))))
1218 (build-system r-build-system)
1219 (home-page "https://cran.r-project.org/web/packages/idr/")
1220 (synopsis "Irreproducible discovery rate")
1222 "This is a package for estimating the copula mixture model and plotting
1223 correspondence curves in \"Measuring reproducibility of high-throughput
1224 experiments\" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779,
1225 by Li, Brown, Huang, and Bickel")
1226 (license license:gpl2+)))
1228 (define-public r-inline
1234 (uri (cran-uri "inline" version))
1237 "0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"))))
1238 (build-system r-build-system)
1239 (home-page "https://cran.r-project.org/web/packages/inline")
1240 (synopsis "Functions to inline C, C++, Fortran function calls from R")
1242 "This package provides functionality to dynamically define R functions
1243 and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and
1244 @code{.Call} calling conventions.")
1245 ;; Any version of the LGPL.
1246 (license license:lgpl3+)))
1248 (define-public r-bbmle
1255 (uri (cran-uri "bbmle" version))
1258 "1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc"))))
1259 (build-system r-build-system)
1261 `(("r-lattice" ,r-lattice)
1263 ("r-numderiv" ,r-numderiv)))
1264 (home-page "https://cran.r-project.org/web/packages/bbmle")
1265 (synopsis "Tools for General Maximum Likelihood Estimation")
1267 "This package provides methods and functions for fitting maximum
1268 likelihood models in R. This package modifies and extends the @code{mle}
1269 classes in the @code{stats4} package.")
1270 ;; Any version of the GPL
1271 (license license:gpl2+)))
1273 (define-public r-emdbook
1280 (uri (cran-uri "emdbook" version))
1283 "0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv"))))
1284 (build-system r-build-system)
1286 `(("r-bbmle" ,r-bbmle)
1288 ("r-lattice" ,r-lattice)
1291 ("r-rcpp" ,r-rcpp)))
1292 (home-page "http://www.math.mcmaster.ca/bolker/emdbook")
1293 (synopsis "Support functions and data for \"Ecological Models and Data\"")
1295 "This package provides auxiliary functions and data sets for \"Ecological
1296 Models and Data\", a book presenting maximum likelihood estimation and related
1297 topics for ecologists (ISBN 978-0-691-12522-0).")
1299 (license (list license:gpl2 license:gpl3))))
1301 (define-public r-lpsolve
1308 (uri (cran-uri "lpSolve" version))
1311 "13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"))))
1312 (properties `((upstream-name . "lpSolve")))
1313 (build-system r-build-system)
1314 (home-page "https://cran.r-project.org/web/packages/lpSolve")
1315 (synopsis "R interface to Lp_solve to solve linear/integer programs")
1317 "Lp_solve is software for solving linear, integer and mixed integer
1318 programs. This implementation supplies a \"wrapper\" function in C and some R
1319 functions that solve general linear/integer problems, assignment problems, and
1320 transportation problems.")
1321 (license license:lgpl2.0)))
1323 (define-public r-limsolve
1330 (uri (cran-uri "limSolve" version))
1333 "1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"))))
1334 (properties `((upstream-name . "limSolve")))
1335 (build-system r-build-system)
1337 `(("r-lpsolve" ,r-lpsolve)
1339 ("r-quadprog" ,r-quadprog)))
1340 (native-inputs `(("gfortran" ,gfortran)))
1341 (home-page "https://cran.r-project.org/web/packages/limSolve")
1342 (synopsis "Solving linear inverse models")
1344 "This package provides functions that:
1347 @item find the minimum/maximum of a linear or quadratic function,
1348 @item sample an underdetermined or overdetermined system,
1349 @item solve a linear system Ax=B for the unknown x.
1352 It includes banded and tridiagonal linear systems. The package calls Fortran
1353 functions from LINPACK.")
1355 (license (list license:gpl2+ license:gpl3+))))
1357 (define-public r-fitdistrplus
1359 (name "r-fitdistrplus")
1364 (uri (cran-uri "fitdistrplus" version))
1367 "12hckg3y5j3zh9q1gwxkc27q813p2r42iqp7wdfiq6nj55jrh6w6"))))
1368 (build-system r-build-system)
1370 `(("r-mass" ,r-mass)
1371 ("r-npsurv" ,r-npsurv)
1372 ("r-survival" ,r-survival)))
1373 (home-page "http://riskassessment.r-forge.r-project.org")
1374 (synopsis "Fitting a parametric distribution from data")
1376 "This package extends the @code{fitdistr} function of the MASS package
1377 with several functions to help the fit of a parametric distribution to
1378 non-censored or censored data. Censored data may contain left-censored,
1379 right-censored and interval-censored values, with several lower and upper
1380 bounds. In addition to @dfn{maximum likelihood estimation} (MLE), the package
1381 provides moment matching (MME), quantile matching (QME) and maximum
1382 goodness-of-fit estimation (MGE) methods (available only for non-censored
1383 data). Weighted versions of MLE, MME and QME are available.")
1384 (license license:gpl2+)))
1386 (define-public r-energy
1393 (uri (cran-uri "energy" version))
1396 "15k9dg0a82cs9ypm0wpcsff3il1hzhnnv86dv5ngby1r144czhi4"))))
1397 (build-system r-build-system)
1399 `(("r-boot" ,r-boot)
1400 ("r-rcpp" ,r-rcpp)))
1401 (home-page "https://cran.r-project.org/web/packages/energy")
1402 (synopsis "Multivariate inference via the energy of data")
1404 "This package provides e-statistics (energy) tests and statistics for
1405 multivariate and univariate inference, including distance correlation,
1406 one-sample, two-sample, and multi-sample tests for comparing multivariate
1407 distributions, are implemented. Measuring and testing multivariate
1408 independence based on distance correlation, partial distance correlation,
1409 multivariate goodness-of-fit tests, clustering based on energy distance,
1410 testing for multivariate normality, distance components (disco) for
1411 non-parametric analysis of structured data, and other energy
1412 statistics/methods are implemented.")
1413 (license license:gpl2+)))
1415 (define-public r-suppdists
1417 (name "r-suppdists")
1422 (uri (cran-uri "SuppDists" version))
1425 "1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"))))
1426 (properties `((upstream-name . "SuppDists")))
1427 (build-system r-build-system)
1428 (home-page "https://cran.r-project.org/web/packages/SuppDists")
1429 (synopsis "Supplementary distributions")
1431 "This package provides ten distributions supplementing those built into
1432 R. Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi squared,
1433 Spearman's rho, maximum F ratio, the Pearson product moment correlation
1434 coefficient, Johnson distributions, normal scores and generalized
1435 hypergeometric distributions. In addition two random number generators of
1436 George Marsaglia are included.")
1437 (license license:gpl2+)))
1439 (define-public r-ksamples
1446 (uri (cran-uri "kSamples" version))
1449 "15d5q5vpp4wx5rk5kjxjdxpwc8mkq5sbdz8gi07iscrvhzb5rzfr"))))
1450 (properties `((upstream-name . "kSamples")))
1451 (build-system r-build-system)
1453 `(("r-suppdists" ,r-suppdists)))
1454 (home-page "https://cran.r-project.org/web/packages/kSamples")
1455 (synopsis "K-Sample rank tests and their combinations")
1457 "This package provides tools to compares k samples using the
1458 Anderson-Darling test, Kruskal-Wallis type tests with different rank score
1459 criteria, Steel's multiple comparison test, and the Jonckheere-Terpstra (JT)
1460 test. It computes asymptotic, simulated or (limited) exact P-values, all
1461 valid under randomization, with or without ties, or conditionally under random
1462 sampling from populations, given the observed tie pattern. Except for Steel's
1463 test and the JT test it also combines these tests across several blocks of
1465 (license license:gpl2+)))
1467 (define-public r-cvst
1474 (uri (cran-uri "CVST" version))
1477 "05l3yzkfrbds09ah9cdwn2sn4ryhq78lz33ryzrgkv176jc8qjw5"))))
1478 (properties `((upstream-name . "CVST")))
1479 (build-system r-build-system)
1481 `(("r-kernlab" ,r-kernlab)
1482 ("r-matrix" ,r-matrix)))
1483 (home-page "https://cran.r-project.org/web/packages/CVST")
1484 (synopsis "Fast cross-validation via sequential testing")
1486 "This package implements the fast cross-validation via sequential
1487 testing (CVST) procedure. CVST is an improved cross-validation procedure
1488 which uses non-parametric testing coupled with sequential analysis to
1489 determine the best parameter set on linearly increasing subsets of the data.
1490 Additionally to the CVST the package contains an implementation of the
1491 ordinary k-fold cross-validation with a flexible and powerful set of helper
1492 objects and methods to handle the overall model selection process. The
1493 implementations of the Cochran's Q test with permutations and the sequential
1494 testing framework of Wald are generic and can therefore also be used in other
1496 (license license:gpl2+)))
1498 (define-public r-squarem
1501 (version "2017.10-1")
1505 (uri (cran-uri "SQUAREM" version))
1508 "10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"))))
1509 (properties `((upstream-name . "SQUAREM")))
1510 (build-system r-build-system)
1511 (home-page "http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html")
1512 (synopsis "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms")
1514 "This package provides algorithms for accelerating the convergence of
1515 slow, monotone sequences from smooth, contraction mapping such as the EM
1516 algorithm. It can be used to accelerate any smooth, linearly convergent
1517 acceleration scheme. A tutorial style introduction to this package is
1518 available in a vignette.")
1519 (license license:gpl2+)))
1521 (define-public r-lava
1528 (uri (cran-uri "lava" version))
1531 "0cayjspry3r2lcbvl77v5v52b2zarri3b8xsf87pw5a3jn9anxcf"))))
1532 (build-system r-build-system)
1534 `(("r-numderiv" ,r-numderiv)
1535 ("r-squarem" ,r-squarem)
1536 ("r-survival" ,r-survival)))
1537 (home-page "https://github.com/kkholst/lava")
1538 (synopsis "Latent variable models")
1540 "This package provides tools for the estimation and simulation of latent
1542 (license license:gpl3)))
1544 (define-public r-drr
1551 (uri (cran-uri "DRR" version))
1554 "1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"))))
1555 (properties `((upstream-name . "DRR")))
1556 (build-system r-build-system)
1558 `(("r-cvst" ,r-cvst)
1559 ("r-kernlab" ,r-kernlab)
1560 ("r-matrix" ,r-matrix)))
1561 (home-page "https://cran.r-project.org/web/packages/DRR")
1562 (synopsis "Dimensionality reduction via regression")
1564 "This package provides an implementation of dimensionality reduction via
1565 regression using Kernel Ridge Regression.")
1566 (license license:gpl3)))
1568 (define-public r-prodlim
1571 (version "2018.04.18")
1575 (uri (cran-uri "prodlim" version))
1578 "1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb"))))
1579 (build-system r-build-system)
1581 `(("r-kernsmooth" ,r-kernsmooth)
1584 ("r-survival" ,r-survival)))
1585 (home-page "https://cran.r-project.org/web/packages/prodlim")
1586 (synopsis "Product-limit estimation for censored event history analysis")
1588 "This package provides a fast and user-friendly implementation of
1589 nonparametric estimators for censored event history (survival) analysis with
1590 the Kaplan-Meier and Aalen-Johansen methods.")
1591 (license license:gpl2+)))
1593 (define-public r-dimred
1600 (uri (cran-uri "dimRed" version))
1603 "0ssy2qriiy6zdawriqcbl67qiq68ipml3frq7aqlq70r2fqyyw48"))))
1604 (properties `((upstream-name . "dimRed")))
1605 (build-system r-build-system)
1606 (propagated-inputs `(("r-drr" ,r-drr)))
1607 (home-page "https://github.com/gdkrmr/dimRed")
1608 (synopsis "Framework for dimensionality reduction")
1610 "This package provides a collection of dimensionality reduction
1611 techniques from R packages and provides a common interface for calling the
1613 (license license:gpl3)))
1615 (define-public r-timedate
1618 (version "3043.102")
1622 (uri (cran-uri "timeDate" version))
1625 "0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"))))
1626 (properties `((upstream-name . "timeDate")))
1627 (build-system r-build-system)
1628 (home-page "https://www.rmetrics.org")
1629 (synopsis "Chronological and calendar objects")
1631 "This package provides an environment for teaching \"Financial
1632 Engineering and Computational Finance\" and for managing chronological and
1634 (license license:gpl2+)))
1636 (define-public r-magic
1643 (uri (cran-uri "magic" version))
1646 "0snmdh6vk0p6ar1swsihisinxrx7l8371dri5lk0z24ysgr5w7gs"))))
1647 (build-system r-build-system)
1649 `(("r-abind" ,r-abind)))
1650 (home-page "https://github.com/RobinHankin/magic.git")
1651 (synopsis "Create and investigate magic squares")
1653 "This package provides a collection of efficient, vectorized algorithms
1654 for the creation and investigation of magic squares and hypercubes, including
1655 a variety of functions for the manipulation and analysis of arbitrarily
1656 dimensioned arrays.")
1657 (license license:gpl2)))
1659 (define-public r-geometry
1666 (uri (cran-uri "geometry" version))
1669 "0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"))))
1670 (build-system r-build-system)
1671 (propagated-inputs `(("r-magic" ,r-magic)))
1672 (home-page "http://geometry.r-forge.r-project.org/")
1673 (synopsis "Mesh generation and surface tesselation")
1675 "This package makes the qhull library available in R, in a similar manner
1676 as in Octave. Qhull computes convex hulls, Delaunay triangulations, halfspace
1677 intersections about a point, Voronoi diagrams, furthest-site Delaunay
1678 triangulations, and furthest-site Voronoi diagrams. It runs in 2-d, 3-d, 4-d,
1679 and higher dimensions. It implements the Quickhull algorithm for computing
1680 the convex hull. Qhull does not support constrained Delaunay triangulations,
1681 or mesh generation of non-convex objects, but the package does include some R
1682 functions that allow for this. Currently the package only gives access to
1683 Delaunay triangulation and convex hull computation.")
1684 ;; The Qhull sources are included and are distributed under a custom
1685 ;; non-copyleft license. The R sources are released under GPL version 2.
1686 (license (list license:gpl2
1687 (license:non-copyleft "http://www.qhull.org/COPYING.txt")))))
1689 (define-public r-ddalpha
1696 (uri (cran-uri "ddalpha" version))
1699 "16cn0bhbaz9l9k4y79sv2d4f7pvs7dyka273y89igs5jvr99kfj1"))))
1700 (build-system r-build-system)
1703 ("r-class" ,r-class)
1704 ("r-geometry" ,r-geometry)
1707 ("r-robustbase" ,r-robustbase)
1708 ("r-sfsmisc" ,r-sfsmisc)))
1710 `(("gfortran" ,gfortran)))
1711 (home-page "https://cran.r-project.org/web/packages/ddalpha")
1712 (synopsis "Depth-Based classification and calculation of data depth")
1714 "This package contains procedures for depth-based supervised learning,
1715 which are entirely non-parametric, in particular the DDalpha-procedure (Lange,
1716 Mosler and Mozharovskyi, 2014). The training data sample is transformed by a
1717 statistical depth function to a compact low-dimensional space, where the final
1718 classification is done. It also offers an extension to functional data and
1719 routines for calculating certain notions of statistical depth functions. 50
1720 multivariate and 5 functional classification problems are included.")
1721 (license license:gpl2)))
1723 (define-public r-gower
1730 (uri (cran-uri "gower" version))
1733 "1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"))))
1734 (build-system r-build-system)
1736 `(("r-knitr" ,r-knitr)))
1737 (home-page "https://github.com/markvanderloo/gower")
1738 (synopsis "Gower's distance")
1740 "This package provides tools to compute Gower's distance (or similarity)
1741 coefficient between records, and to compute the top-n matches between records.
1742 Core algorithms are executed in parallel on systems supporting OpenMP.")
1743 (license license:gpl3)))
1745 (define-public r-rcpproll
1752 (uri (cran-uri "RcppRoll" version))
1755 "0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"))))
1756 (properties `((upstream-name . "RcppRoll")))
1757 (build-system r-build-system)
1759 `(("r-rcpp" ,r-rcpp)))
1760 (home-page "https://cran.r-project.org/web/packages/RcppRoll")
1761 (synopsis "Efficient rolling and windowed operations")
1763 "This package provides fast and efficient routines for common rolling /
1764 windowed operations. Routines for the efficient computation of windowed mean,
1765 median, sum, product, minimum, maximum, standard deviation and variance are
1767 (license license:gpl2+)))
1769 (define-public r-ipred
1776 (uri (cran-uri "ipred" version))
1779 "01xcg3c121ndfpz9dirqxszknh4yb1p222p7f1wbwwhdrg1i27cw"))))
1780 (build-system r-build-system)
1782 `(("r-class" ,r-class)
1785 ("r-prodlim" ,r-prodlim)
1786 ("r-rpart" ,r-rpart)
1787 ("r-survival" ,r-survival)))
1788 (home-page "https://cran.r-project.org/web/packages/ipred")
1789 (synopsis "Improved predictors")
1791 "This package provides improved predictive models by indirect
1792 classification and bagging for classification, regression and survival
1793 problems as well as resampling based estimators of prediction error.")
1794 (license license:gpl2+)))
1796 (define-public r-psych
1803 (uri (cran-uri "psych" version))
1806 "0n3frgzsfmnan6cp3yyq5h6c28v5pd7q5a42pp6byaa7n7d1v478"))))
1807 (build-system r-build-system)
1809 `(("r-foreign" ,r-foreign)
1810 ("r-lattice" ,r-lattice)
1811 ("r-mnormt" ,r-mnormt)
1812 ("r-nlme" ,r-nlme)))
1813 (home-page "https://cran.r-project.org/web/packages/psych/")
1814 (synopsis "Procedures for psychological, psychometric, and personality research")
1816 "This package provides a general purpose toolbox for personality,
1817 psychometric theory and experimental psychology. Functions are primarily for
1818 multivariate analysis and scale construction using factor analysis, principal
1819 component analysis, cluster analysis and reliability analysis, although others
1820 provide basic descriptive statistics. Item Response Theory is done using
1821 factor analysis of tetrachoric and polychoric correlations. Functions for
1822 analyzing data at multiple levels include within and between group statistics,
1823 including correlations and factor analysis. Functions for simulating and
1824 testing particular item and test structures are included. Several functions
1825 serve as a useful front end for structural equation modeling. Graphical
1826 displays of path diagrams, factor analysis and structural equation models are
1827 created using basic graphics.")
1828 (license license:gpl2+)))
1830 (define-public r-broom
1837 (uri (cran-uri "broom" version))
1840 "1r3831vq0fd5sh5841xr844sghg88z7ws91hg4jgnzbbkxfjp4ag"))))
1841 (build-system r-build-system)
1843 `(("r-backports" ,r-backports)
1844 ("r-dplyr" ,r-dplyr)
1846 ("r-purrr" ,r-purrr)
1847 ("r-reshape2" ,r-reshape2)
1848 ("r-stringr" ,r-stringr)
1849 ("r-tibble" ,r-tibble)
1850 ("r-tidyr" ,r-tidyr)))
1851 (home-page "https://github.com/tidyverse/broom")
1852 (synopsis "Convert statistical analysis objects into tidy data frames")
1854 "This package provides tools to convert statistical analysis objects from
1855 R into tidy data frames, so that they can more easily be combined, reshaped
1856 and otherwise processed with tools like @code{dplyr}, @code{tidyr} and
1857 @code{ggplot2}. The package provides three S3 generics: @code{tidy}, which
1858 summarizes a model's statistical findings such as coefficients of a
1859 regression; @code{augment}, which adds columns to the original data such as
1860 predictions, residuals and cluster assignments; and @code{glance}, which
1861 provides a one-row summary of model-level statistics.")
1862 (license license:expat)))
1864 (define-public r-recipes
1871 (uri (cran-uri "recipes" version))
1874 "0bwijw4427v2k5z3qci2kyr5dyzql8b3lvf88rwy16p741jckjsn"))))
1875 (build-system r-build-system)
1877 `(("r-broom" ,r-broom)
1878 ("r-ddalpha" ,r-ddalpha)
1879 ("r-dimred" ,r-dimred)
1880 ("r-dplyr" ,r-dplyr)
1881 ("r-gower" ,r-gower)
1882 ("r-ipred" ,r-ipred)
1883 ("r-lubridate" ,r-lubridate)
1884 ("r-magrittr" ,r-magrittr)
1885 ("r-matrix" ,r-matrix)
1887 ("r-purrr" ,r-purrr)
1888 ("r-rcpproll" ,r-rcpproll)
1889 ("r-rlang" ,r-rlang)
1890 ("r-tibble" ,r-tibble)
1891 ("r-tidyselect" ,r-tidyselect)
1892 ("r-timedate" ,r-timedate)))
1893 (home-page "https://github.com/topepo/recipes")
1894 (synopsis "Preprocessing tools to create design matrices")
1896 "Recipes is an extensible framework to create and preprocess design
1897 matrices. Recipes consist of one or more data manipulation and analysis
1898 \"steps\". Statistical parameters for the steps can be estimated from an
1899 initial data set and then applied to other data sets. The resulting design
1900 matrices can then be used as inputs into statistical or machine learning
1902 (license license:gpl2)))
1904 (define-public r-pdist
1911 (uri (cran-uri "pdist" version))
1914 "18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"))))
1915 (build-system r-build-system)
1916 (home-page "https://github.com/jeffwong/pdist")
1917 (synopsis "Partitioned distance function")
1919 "Pdist computes the euclidean distance between rows of a matrix X and
1920 rows of another matrix Y. Previously, this could be done by binding the two
1921 matrices together and calling @code{dist}, but this creates unnecessary
1922 computation by computing the distances between a row of X and another row of
1923 X, and likewise for Y. Pdist strictly computes distances across the two
1924 matrices, not within the same matrix, making computations significantly faster
1925 for certain use cases.")
1926 (license license:gpl3+)))
1928 (define-public r-ggrepel
1935 (uri (cran-uri "ggrepel" version))
1938 "1m3p84d6nh9mzzvxb82vgig3ngcvkz86rjwzl9a66ckdf5p611k3"))))
1939 (build-system r-build-system)
1941 `(("r-ggplot2" ,r-ggplot2)
1943 ("r-scales" ,r-scales)))
1944 (home-page "http://github.com/slowkow/ggrepel")
1945 (synopsis "Repulsive text and label geometries for ggplot2")
1947 "This package provides text and label geometries for ggplot2 that help to
1948 avoid overlapping text labels. Labels repel away from each other and away
1949 from the data points.")
1950 (license license:gpl3)))
1952 (define-public r-corrplot
1959 (uri (cran-uri "corrplot" version))
1962 "1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"))))
1963 (build-system r-build-system)
1964 (home-page "https://github.com/taiyun/corrplot")
1965 (synopsis "Visualization of a correlation matrix")
1967 "This package provides a graphical display of a correlation matrix or
1968 general matrix. It also contains some algorithms to do matrix reordering. In
1969 addition, corrplot is good at details, including choosing color, text labels,
1970 color labels, layout, etc.")
1971 ;; Any version of the GPL
1972 (license license:gpl2+)))
1974 (define-public r-stringdist
1976 (name "r-stringdist")
1981 (uri (cran-uri "stringdist" version))
1984 "0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa"))))
1985 (build-system r-build-system)
1986 (home-page "https://github.com/markvanderloo/stringdist")
1987 (synopsis "Approximate string matching and string distance functions")
1989 "This package implements an approximate string matching version of R's
1990 native @code{match} function. It can calculate various string distances based
1991 on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment),
1992 qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro,
1993 Jaro-Winkler). An implementation of soundex is provided as well. Distances
1994 can be computed between character vectors while taking proper care of encoding
1995 or between integer vectors representing generic sequences.")
1996 (license license:gpl3+)))
1998 (define-public r-ucminf
2005 (uri (cran-uri "ucminf" version))
2008 "01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"))))
2009 (build-system r-build-system)
2010 (native-inputs `(("gfortran" ,gfortran)))
2011 (home-page "https://cran.r-project.org/web/packages/ucminf/")
2012 (synopsis "General-purpose unconstrained non-linear optimization")
2014 "This package provides an implementation of an algorithm for
2015 general-purpose unconstrained non-linear optimization. The algorithm is of
2016 quasi-Newton type with BFGS updating of the inverse Hessian and soft line
2017 search with a trust region type monitoring of the input to the line search
2018 algorithm. The interface of @code{ucminf} is designed for easy interchange
2019 with the package @code{optim}.")
2020 (license license:gpl2+)))
2022 (define-public r-ordinal
2025 (version "2018.8-25")
2029 (uri (cran-uri "ordinal" version))
2032 "03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h"))))
2033 (build-system r-build-system)
2035 `(("r-mass" ,r-mass)
2036 ("r-matrix" ,r-matrix)
2037 ("r-numderiv" ,r-numderiv)
2038 ("r-ucminf" ,r-ucminf)))
2039 (home-page "https://github.com/runehaubo/ordinal")
2040 (synopsis "Regression models for ordinal data")
2042 "This package provides an implementation of cumulative link (mixed)
2043 models also known as ordered regression models, proportional odds models,
2044 proportional hazards models for grouped survival times and ordered models.
2045 Estimation is via maximum likelihood and mixed models are fitted with the
2046 Laplace approximation and adaptive Gauss-Hermite quadrature.")
2047 (license license:gpl2+)))
2049 (define-public r-jomo
2056 (uri (cran-uri "jomo" version))
2059 "109q5m69clrvvialxdxznd0wdb54ajhx84nj8slx8bf909a427mj"))))
2060 (build-system r-build-system)
2062 `(("r-lme4" ,r-lme4)
2064 ("r-ordinal" ,r-ordinal)
2065 ("r-survival" ,r-survival)))
2066 (home-page "https://cran.r-project.org/web/packages/jomo/")
2067 (synopsis "Multilevel Joint Modelling Multiple Imputation")
2069 "Similarly to Schafer's package pan, jomo is a package for multilevel
2070 joint modelling multiple imputation @url{Carpenter and Kenward (2013),
2071 http://doi.org/10.1002/9781119942283}. Novel aspects of jomo are the
2072 possibility of handling binary and categorical data through latent normal
2073 variables, the option to use cluster-specific covariance matrices and to
2074 impute compatibly with the substantive model.")
2075 (license license:gpl2)))
2077 (define-public r-pan
2084 (uri (cran-uri "pan" version))
2087 "1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"))))
2088 (build-system r-build-system)
2089 (native-inputs `(("gfortran" ,gfortran)))
2090 (home-page "https://cran.r-project.org/web/packages/pan/")
2091 (synopsis "Multiple imputation for multivariate panel or clustered data")
2093 "This package implements multiple imputation for multivariate panel or
2095 (license license:gpl3)))
2097 (define-public r-mitml
2104 (uri (cran-uri "mitml" version))
2107 "1pkqv4qazih3byws5z6629pp232n8ra56lip7502727b0b4bsndw"))))
2108 (build-system r-build-system)
2110 `(("r-haven" ,r-haven)
2113 (home-page "https://cran.r-project.org/web/packages/mitml/")
2114 (synopsis "Tools for multiple imputation in multilevel modeling")
2116 "This package provides tools for multiple imputation of missing data in
2117 multilevel modeling. It includes a user-friendly interface to the packages
2118 pan and jomo, and several functions for visualization, data management and the
2119 analysis of multiply imputed data sets.")
2120 (license license:gpl2+)))
2122 (define-public r-mice
2129 (uri (cran-uri "mice" version))
2132 "1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx"))))
2133 (build-system r-build-system)
2135 `(("r-broom" ,r-broom)
2136 ("r-dplyr" ,r-dplyr)
2137 ("r-lattice" ,r-lattice)
2139 ("r-mitml" ,r-mitml)
2142 ("r-rlang" ,r-rlang)
2143 ("r-rpart" ,r-rpart)
2144 ("r-survival" ,r-survival)))
2145 (home-page "https://cran.r-project.org/web/packages/mice/")
2146 (synopsis "Multivariate imputation by chained equations")
2148 "Multiple imputation using @dfn{Fully Conditional Specification} (FCS)
2149 implemented by the MICE algorithm as described in @url{Van Buuren and
2150 Groothuis-Oudshoorn (2011), http://doi.org/10.18637/jss.v045.i03}. Each
2151 variable has its own imputation model. Built-in imputation models are
2152 provided for continuous data (predictive mean matching, normal), binary
2153 data (logistic regression), unordered categorical data (polytomous logistic
2154 regression) and ordered categorical data (proportional odds). MICE can also
2155 impute continuous two-level data (normal model, pan, second-level variables).
2156 Passive imputation can be used to maintain consistency between variables.
2157 Various diagnostic plots are available to inspect the quality of the
2159 ;; Any of these two versions.
2160 (license (list license:gpl2 license:gpl3))))
2162 (define-public r-truncnorm
2164 (name "r-truncnorm")
2169 (uri (cran-uri "truncnorm" version))
2172 "0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9"))))
2173 (build-system r-build-system)
2174 (home-page "https://cran.r-project.org/web/packages/truncnorm/")
2175 (synopsis "Truncated normal distribution")
2176 (description "This package provides functions for the truncated normal
2177 distribution with mean equal to @code{mean} and standard deviation equal to
2178 @code{sd}. It includes density, distribution, quantile, and expected value
2179 functions, as well as a random generation function.")
2180 (license license:gpl2)))
2182 (define-public r-rsolnp
2189 (uri (cran-uri "Rsolnp" version))
2192 "0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"))))
2193 (properties `((upstream-name . "Rsolnp")))
2194 (build-system r-build-system)
2196 `(("r-truncnorm" ,r-truncnorm)))
2197 (home-page "https://cran.r-project.org/web/packages/Rsolnp/")
2198 (synopsis "General non-linear optimization")
2199 (description "The Rsolnp package implements a general non-linear augmented
2200 Lagrange multiplier method solver, a @dfn{sequential quadratic
2201 programming} (SQP) based solver).")
2202 ;; Any version of the GPL.
2203 (license license:gpl2+)))
2205 (define-public r-hardyweinberg
2207 (name "r-hardyweinberg")
2212 (uri (cran-uri "HardyWeinberg" version))
2215 "16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz"))))
2216 (properties `((upstream-name . "HardyWeinberg")))
2217 (build-system r-build-system)
2219 `(("r-mice" ,r-mice)
2221 ("r-rsolnp" ,r-rsolnp)))
2222 (home-page "https://cran.r-project.org/package=HardyWeinberg")
2223 (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
2225 "This package contains tools for exploring Hardy-Weinberg equilibrium for
2226 diallelic genetic marker data. All classical tests (chi-square, exact,
2227 likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
2228 included in the package, as well as functions for power computation and for
2229 the simulation of marker data under equilibrium and disequilibrium. Routines
2230 for dealing with markers on the X-chromosome are included. Functions for
2231 testing equilibrium in the presence of missing data by using multiple
2232 imputation are also provided. Implements several graphics for exploring the
2233 equilibrium status of a large set of diallelic markers: ternary plots with
2234 acceptance regions, log-ratio plots and Q-Q plots.")
2235 (license license:gpl2+)))
2244 (uri (cran-uri "sm" version))
2247 "0c4whcx879gb4lwvqnzxl5n9xgpcqh2c54ip9ami3mwfprzcv45q"))))
2248 (build-system r-build-system)
2249 (native-inputs `(("gfortran" ,gfortran)))
2250 (home-page "http://www.stats.gla.ac.uk/~adrian/sm/")
2251 (synopsis "Smoothing methods for nonparametric regression and density estimation")
2253 "This is software accompanying the book 'Applied Smoothing Techniques for
2254 Data Analysis---The Kernel Approach with S-Plus Illustrations', Oxford
2255 University Press. It provides smoothing methods for nonparametric regression
2256 and density estimation")
2257 (license license:gpl2+)))
2259 (define-public r-venndiagram
2261 (name "r-venndiagram")
2265 (uri (cran-uri "VennDiagram" version))
2268 "1ic1jaxzw98si2p4n1fl4n3myhd7fpw0njb634cwhviwybzv6775"))))
2269 (properties `((upstream-name . "VennDiagram")))
2270 (build-system r-build-system)
2272 `(("r-futile-logger" ,r-futile-logger)))
2273 (home-page "https://cran.r-project.org/web/packages/VennDiagram/")
2274 (synopsis "Generate High-Resolution Venn and Euler Plots")
2276 "This package provides a set of functions to generate high-resolution
2277 Venn and Euler plots. It includes handling for several special cases,
2278 including two-case scaling, and extensive customization of plot shape and
2280 (license license:gpl2+)))
2282 (define-public r-vioplot
2289 (uri (cran-uri "vioplot" version))
2292 "16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"))))
2293 (build-system r-build-system)
2294 (propagated-inputs `(("r-sm" ,r-sm)))
2295 (home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler")
2296 (synopsis "Violin plot")
2298 "This package provides a violin plot, which is a combination of a box
2299 plot and a kernel density plot.")
2300 (license license:bsd-3)))
2302 (define-public r-rsofia
2308 ;; This package has been removed from CRAN, so we can
2309 ;; only fetch it from the archives.
2310 (uri (string-append "https://cran.r-project.org/src/"
2311 "contrib/Archive/RSofia/RSofia_"
2315 "0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"))))
2316 (properties `((upstream-name . "RSofia")))
2317 (build-system r-build-system)
2319 `(("r-rcpp" ,r-rcpp)))
2320 (home-page "https://cran.r-project.org/src/contrib/Archive/RSofia")
2321 (synopsis "Port of sofia-ml to R")
2322 (description "This package is a port of sofia-ml to R. Sofia-ml is a
2323 suite of fast incremental algorithms for machine learning that can be used for
2324 training models for classification or ranking.")
2325 (license license:asl2.0)))
2327 (define-public r-xts
2334 (uri (cran-uri "xts" version))
2337 "1f0kxrvn13py3hk2gh2m56cqm39x3bqp1i350r5viddacrm2yxqj"))))
2338 (build-system r-build-system)
2339 (propagated-inputs `(("r-zoo" ,r-zoo)))
2340 (home-page "https://github.com/joshuaulrich/xts")
2341 (synopsis "Extensible time series")
2343 "This package provides for uniform handling of R's different time-based
2344 data classes by extending @code{zoo}, maximizing native format information
2345 preservation and allowing for user-level customization and extension, while
2346 simplifying cross-class interoperability.")
2347 (license license:gpl2+)))
2349 (define-public r-performanceanalytics
2351 (name "r-performanceanalytics")
2356 (uri (cran-uri "PerformanceAnalytics" version))
2359 "01bgm57z079g6r505w3bj293zkbd49fwa8sg55z87vizwavipml6"))))
2361 `((upstream-name . "PerformanceAnalytics")))
2362 (build-system r-build-system)
2364 `(("r-quadprog" ,r-quadprog)
2367 (home-page "https://r-forge.r-project.org/projects/returnanalytics/")
2368 (synopsis "Econometric tools for performance and risk analysis")
2369 (description "This is a collection of econometric functions for
2370 performance and risk analysis. This package aims to aid practitioners and
2371 researchers in utilizing the latest research in analysis of non-normal return
2372 streams. In general, it is most tested on return (rather than price) data on
2373 a regular scale, but most functions will work with irregular return data as
2374 well, and increasing numbers of functions will work with P&L or price data
2376 ;; Either version may be picked.
2377 (license (list license:gpl2 license:gpl3))))
2379 (define-public r-laeken
2386 (uri (cran-uri "laeken" version))
2389 "1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"))))
2390 (build-system r-build-system)
2392 `(("r-boot" ,r-boot)
2393 ("r-mass" ,r-mass)))
2394 (home-page "https://cran.r-project.org/web/packages/laeken/")
2395 (synopsis "Estimation of indicators on social exclusion and poverty")
2396 (description "This package provides tools for the estimation of indicators
2397 on social exclusion and poverty, as well as an implementation of Pareto tail
2398 modeling for empirical income distributions.")
2399 (license license:gpl2+)))
2401 (define-public r-vcd
2408 (uri (cran-uri "vcd" version))
2411 "1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5"))))
2412 (build-system r-build-system)
2414 `(("r-colorspace" ,r-colorspace)
2415 ("r-lmtest" ,r-lmtest)
2416 ("r-mass" ,r-mass)))
2417 (home-page "https://cran.r-project.org/web/packages/vcd/")
2418 (synopsis "Visualizing categorical data")
2419 (description "This package provides visualization techniques, data sets,
2420 summary and inference procedures aimed particularly at categorical data.
2421 Special emphasis is given to highly extensible grid graphics. The package was
2422 originally inspired by the book \"Visualizing Categorical Data\" by Michael
2423 Friendly and is now the main support package for a new book, \"Discrete Data
2424 Analysis with R\" by Michael Friendly and David Meyer (2015).")
2425 (license license:gpl2)))
2427 (define-public r-ica
2434 (uri (cran-uri "ica" version))
2437 "0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7"))))
2438 (build-system r-build-system)
2439 (home-page "https://cran.r-project.org/web/packages/ica/")
2440 (synopsis "Independent component analysis")
2441 (description "This package provides tools for @dfn{Independent Component
2442 Analysis} (ICA) using various algorithms: FastICA,
2443 Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization
2444 of Eigenmatrices} (JADE).")
2445 (license license:gpl2+)))
2447 (define-public r-dtw
2454 (uri (cran-uri "dtw" version))
2457 "1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"))))
2458 (build-system r-build-system)
2459 (propagated-inputs `(("r-proxy" ,r-proxy)))
2460 (home-page "http://dtw.r-forge.r-project.org/")
2461 (synopsis "Dynamic Time Warping Algorithms")
2462 (description "This package provides a comprehensive implementation of
2463 @dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the
2464 optimal (least cumulative distance) alignment between points of two time
2465 series. Common DTW variants covered include local (slope) and global (window)
2466 constraints, subsequence matches, arbitrary distance definitions,
2467 normalizations, minimum variance matching, and so on.")
2468 (license license:gpl2+)))
2470 (define-public r-sdmtools
2477 (uri (cran-uri "SDMTools" version))
2480 "1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"))))
2481 (properties `((upstream-name . "SDMTools")))
2482 (build-system r-build-system)
2483 (propagated-inputs `(("r-r-utils" ,r-r-utils)))
2484 (home-page "http://www.rforge.net/SDMTools/")
2485 (synopsis "Species distribution modelling tools")
2486 (description "This packages provides a set of tools for post processing
2487 the outcomes of species distribution modeling exercises. It includes novel
2488 methods for comparing models and tracking changes in distributions through
2489 time. It further includes methods for visualizing outcomes, selecting
2490 thresholds, calculating measures of accuracy and landscape fragmentation
2492 (license license:gpl3+)))
2494 (define-public r-scatterplot3d
2496 (name "r-scatterplot3d")
2501 (uri (cran-uri "scatterplot3d" version))
2504 "152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"))))
2505 (build-system r-build-system)
2506 (home-page "https://cran.r-project.org/web/packages/scatterplot3d/")
2507 (synopsis "3D scatter plot")
2508 (description "This package provides an implementation of scatter plots for
2509 plotting. a three dimensional point cloud.")
2510 (license license:gpl2)))
2512 (define-public r-ggridges
2519 (uri (cran-uri "ggridges" version))
2522 "0dhwcpy785ac2ny5bjp284595nnybi3554wd0yffsli0vzf7ry01"))))
2523 (build-system r-build-system)
2525 `(("r-ggplot2" ,r-ggplot2)
2527 ("r-scales" ,r-scales)
2528 ("r-withr" ,r-withr)))
2529 (home-page "https://github.com/clauswilke/ggridges")
2530 (synopsis "Ridgeline plots in ggplot2")
2532 "Ridgeline plots provide a convenient way of visualizing changes in
2533 distributions over time or space. This package enables the creation of such
2534 plots in @code{ggplot2}.")
2535 (license license:gpl2)))
2537 (define-public r-ggjoy
2544 (uri (cran-uri "ggjoy" version))
2547 "012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"))))
2548 (build-system r-build-system)
2550 `(("r-ggplot2" ,r-ggplot2)
2551 ("r-ggridges" ,r-ggridges)))
2552 (home-page "https://github.com/clauswilke/ggjoy")
2553 (synopsis "Joyplots in ggplot2")
2554 (description "Joyplots provide a convenient way of visualizing changes in
2555 distributions over time or space. This package enables the creation of such
2556 plots in @code{ggplot2}.")
2557 (license license:gpl2)))
2559 (define-public r-cli
2566 (uri (cran-uri "cli" version))
2569 "1r2yih4c0bdmbx0qrarlf0m1p5z30sri755zmdazsq2pw76zp07g"))))
2570 (build-system r-build-system)
2572 `(("r-assertthat" ,r-assertthat)
2573 ("r-crayon" ,r-crayon)))
2574 (home-page "https://github.com/r-lib/cli#readme")
2575 (synopsis "Helpers for developing command line interfaces")
2576 (description "This package provides a suite of tools designed to build
2577 attractive command line interfaces (CLIs). It includes tools for drawing
2578 rules, boxes, trees, and Unicode symbols with ASCII alternatives.")
2579 (license license:expat)))
2581 (define-public r-argparser
2583 (name "r-argparser")
2588 (uri (cran-uri "argparser" version))
2591 "0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"))))
2592 (build-system r-build-system)
2593 (home-page "https://bitbucket.org/djhshih/argparser")
2594 (synopsis "Command-line argument parser")
2596 "This package provides a cross-platform command-line argument parser
2597 written purely in R with no external dependencies. It is useful with the
2598 Rscript front-end and facilitates turning an R script into an executable
2600 (license license:gpl3+)))
2602 (define-public r-debugme
2609 (uri (cran-uri "debugme" version))
2612 "1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"))))
2613 (build-system r-build-system)
2614 (propagated-inputs `(("r-crayon" ,r-crayon)))
2615 (home-page "https://github.com/r-lib/debugme#readme")
2616 (synopsis "Debug R packages")
2618 "This package allows the user to specify debug messages as special string
2619 constants, and control debugging of packages via environment variables.")
2620 (license license:expat)))
2622 (define-public r-processx
2629 (uri (cran-uri "processx" version))
2632 "1pzx4ap4xa07gf9zkd6hacdsnb9sp3kb60a7v7ljl0ywrcpn1fn4"))))
2633 (build-system r-build-system)
2635 `(("r-assertthat" ,r-assertthat)
2636 ("r-crayon" ,r-crayon)
2639 ("r-testthat" ,r-testthat)))
2640 (home-page "https://github.com/r-lib/processx3")
2641 (synopsis "Execute and control system processes")
2643 "This package provides portable tools to run system processes in the
2644 background. It can check if a background process is running; wait on a
2645 background process to finish; get the exit status of finished processes; kill
2646 background processes and their children; restart processes. It can read the
2647 standard output and error of the processes, using non-blocking connections.
2648 @code{processx} can poll a process for standard output or error, with a
2649 timeout. It can also poll several processes at once.")
2650 (license license:expat)))
2652 (define-public r-tsp
2659 (uri (cran-uri "TSP" version))
2662 "1ym97xl2icjpfkrici0wig29w06bb704hp51v7h5liygjlwpkhlc"))))
2663 (properties `((upstream-name . "TSP")))
2664 (build-system r-build-system)
2665 (propagated-inputs `(("r-foreach" ,r-foreach)))
2666 (home-page "https://cran.r-project.org/web/packages/TSP/")
2667 (synopsis "Traveling salesperson problem (TSP)")
2668 (description "This package provides basic infrastructure and some
2669 algorithms for the @dfn{traveling salesperson problem}(TSP) (also known as the
2670 traveling salesman problem).")
2671 (license license:gpl3)))
2673 (define-public r-qap
2680 (uri (cran-uri "qap" version))
2683 "0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"))))
2684 (build-system r-build-system)
2685 (native-inputs `(("gfortran" ,gfortran)))
2686 (home-page "https://cran.r-project.org/web/packages/qap/")
2687 (synopsis "Heuristics for the quadratic assignment problem (QAP)")
2688 (description "This package implements heuristics for the @dfn{quadratic
2689 assignment problem} (QAP). Currently only a simulated annealing heuristic is
2691 (license license:gpl3)))
2693 (define-public r-gclus
2700 (uri (cran-uri "gclus" version))
2703 "02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"))))
2704 (build-system r-build-system)
2705 (propagated-inputs `(("r-cluster" ,r-cluster)))
2706 (home-page "https://cran.r-project.org/web/packages/gclus/")
2707 (synopsis "Clustering graphics")
2708 (description "This package orders panels in scatterplot matrices and
2709 parallel coordinate displays by some merit index. It contains various indices
2710 of merit, ordering functions, and enhanced versions of @code{pairs} and
2711 @code{parcoord} which color panels according to their merit level.")
2712 (license license:gpl2+)))
2714 (define-public r-webshot
2721 (uri (cran-uri "webshot" version))
2724 "08sb1xi376pfy1vwilk2d68zljsg9yiv04n2dkqz383gdhh0sxdr"))))
2725 (build-system r-build-system)
2727 `(("r-callr" ,r-callr)
2728 ("r-jsonlite" ,r-jsonlite)
2729 ("r-magrittr" ,r-magrittr)))
2730 (home-page "https://github.com/wch/webshot/")
2731 (synopsis "Take screenshots of web pages")
2733 "Webshot makes it easy to take screenshots of web pages from within R.
2734 It can also run Shiny applications locally and take screenshots of the
2735 application; and it can render and screenshot static as well as interactive R
2736 Markdown documents.")
2737 (license license:gpl2)))
2739 (define-public r-seriation
2741 (name "r-seriation")
2746 (uri (cran-uri "seriation" version))
2749 "1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92"))))
2750 (build-system r-build-system)
2752 `(("r-cluster" ,r-cluster)
2753 ("r-colorspace" ,r-colorspace)
2754 ("r-dendextend" ,r-dendextend)
2755 ("r-gclus" ,r-gclus)
2756 ("r-gplots" ,r-gplots)
2759 ("r-registry" ,r-registry)
2761 (native-inputs `(("gfortran" ,gfortran)))
2762 (home-page "http://s2.smu.edu/IDA/seriation/")
2763 (synopsis "Infrastructure for ordering objects using seriation")
2765 "This package provides infrastructure for seriation with an
2766 implementation of several seriation/sequencing techniques to reorder matrices,
2767 dissimilarity matrices, and dendrograms. It also provides (optimally)
2768 reordered heatmaps, color images and clustering visualizations like
2769 dissimilarity plots, and visual assessment of cluster tendency plots (VAT and
2771 (license license:gpl3)))
2773 (define-public r-xfun
2780 (uri (cran-uri "xfun" version))
2783 "0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv"))))
2784 (build-system r-build-system)
2785 (home-page "https://github.com/yihui/xfun")
2786 (synopsis "Miscellaneous functions")
2788 "This package provides miscellaneous functions commonly used in other
2789 packages maintained by Yihui Xie.")
2790 (license license:expat)))
2792 (define-public r-utf8
2799 (uri (cran-uri "utf8" version))
2802 "0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"))))
2803 (build-system r-build-system)
2804 (home-page "https://github.com/patperry/r-utf8")
2805 (synopsis "Unicode text processing")
2807 "This package provides tools to process and print UTF-8 encoded
2808 international text (Unicode). Input, validate, normalize, encode, format, and
2810 (license license:asl2.0)))
2812 (define-public r-pillar
2819 (uri (cran-uri "pillar" version))
2822 "1q6arybmfqxhp5zqj1fri5pb8v7ywcv7bmgf81rrmgl892p4bn5f"))))
2823 (build-system r-build-system)
2826 ("r-crayon" ,r-crayon)
2827 ("r-fansi" ,r-fansi)
2828 ("r-rlang" ,r-rlang)
2829 ("r-utf8" ,r-utf8)))
2830 (home-page "https://github.com/r-lib/pillar")
2831 (synopsis "Coloured formatting for columns")
2833 "This package provides a @code{pillar} generic designed for formatting
2834 columns of data using the full range of colours provided by modern
2836 (license license:gpl3)))
2838 (define-public r-uuid
2845 (uri (cran-uri "uuid" version))
2848 "1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"))))
2849 (build-system r-build-system)
2850 (home-page "http://www.rforge.net/uuid")
2851 (synopsis "Tools for generating and handling of UUIDs")
2853 "This package provides tools for generating and handling of
2854 @dfn{Universally Unique Identifiers} (UUIDs).")
2855 (license license:expat)))
2857 (define-public r-tinytex
2864 (uri (cran-uri "tinytex" version))
2867 "08w5hyq3ysh631d5whgcfv1bb007cdc0bjhb83vwmhazs6rgvyjy"))))
2868 (build-system r-build-system)
2870 `(("r-xfun" ,r-xfun)))
2871 (home-page "https://github.com/yihui/tinytex")
2872 (synopsis "Helper functions for TeX Live and compiling LaTeX documents")
2874 "This package provides helper functions to install and maintain the LaTeX
2875 distribution named TinyTeX, a lightweight, cross-platform, portable, and
2876 easy-to-maintain version of TeX Live. This package also contains helper
2877 functions to compile LaTeX documents, and install missing LaTeX packages
2879 (license license:expat)))
2881 (define-public r-metap
2888 (uri (cran-uri "metap" version))
2891 "18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h"))))
2892 (build-system r-build-system)
2894 `(("r-lattice" ,r-lattice)
2895 ("r-rdpack" ,r-rdpack)))
2896 (home-page "http://www.dewey.myzen.co.uk/meta/meta.html")
2897 (synopsis "Meta-analysis of significance values")
2899 "The canonical way to perform meta-analysis involves using effect sizes.
2900 When they are not available this package provides a number of methods for
2901 meta-analysis of significance values including the methods of Edgington,
2902 Fisher, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate
2903 published results; and a routine for graphical display.")
2904 (license license:gpl2)))
2906 (define-public r-network
2909 (version "1.13.0.1")
2913 (uri (cran-uri "network" version))
2916 "1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0"))))
2917 (build-system r-build-system)
2918 (home-page "https://statnet.org/")
2919 (synopsis "Classes for relational data")
2921 "This package provides tools to create and modify network objects. The
2922 @code{network} class can represent a range of relational data types, and
2923 supports arbitrary vertex/edge/graph attributes.")
2924 (license license:gpl2+)))
2926 (define-public r-statnet-common
2928 (name "r-statnet-common")
2933 (uri (cran-uri "statnet.common" version))
2936 "14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic"))))
2938 `((upstream-name . "statnet.common")))
2939 (build-system r-build-system)
2941 `(("r-coda" ,r-coda)))
2942 (home-page "https://statnet.org")
2943 (synopsis "R scripts and utilities used by the Statnet software")
2944 (description "This package provides non-statistical utilities used by the
2945 software developed by the Statnet Project.")
2946 (license license:gpl3)))
2948 (define-public r-sna
2955 (uri (cran-uri "sna" version))
2958 "1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"))))
2959 (build-system r-build-system)
2961 `(("r-network" ,r-network)
2962 ("r-statnet-common" ,r-statnet-common)))
2963 (home-page "https://statnet.org")
2964 (synopsis "Tools for social network analysis")
2966 "This package provides a range of tools for social network analysis,
2967 including node and graph-level indices, structural distance and covariance
2968 methods, structural equivalence detection, network regression, random graph
2969 generation, and 2D/3D network visualization.")
2970 (license license:gpl2+)))
2972 (define-public r-ttr
2979 (uri (cran-uri "TTR" version))
2982 "18mzyv6cmxmqyqsfwlx2b2k055887mfgc2jgj8xkn8c6m56n05zb"))))
2983 (properties `((upstream-name . "TTR")))
2984 (build-system r-build-system)
2986 `(("r-curl" ,r-curl)
2989 (native-inputs `(("gfortran" ,gfortran)))
2990 (home-page "https://github.com/joshuaulrich/TTR")
2991 (synopsis "Technical trading rules")
2993 "This package provides functions and data to construct technical trading
2995 (license license:gpl2)))
2997 (define-public r-leaps
3004 (uri (cran-uri "leaps" version))
3007 "11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"))))
3008 (build-system r-build-system)
3009 (native-inputs `(("gfortran" ,gfortran)))
3010 (home-page "https://cran.r-project.org/web/packages/leaps/")
3011 (synopsis "Regression subset selection")
3013 "This package provides tools for regression subset selection, including
3014 exhaustive search.")
3015 (license license:gpl2+)))
3017 (define-public r-splus2r
3024 (uri (cran-uri "splus2R" version))
3027 "0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"))))
3028 (properties `((upstream-name . "splus2R")))
3029 (build-system r-build-system)
3030 (native-inputs `(("gfortran" ,gfortran)))
3031 (home-page "https://cran.r-project.org/web/packages/splus2R/")
3032 (synopsis "Supplemental S-PLUS functionality in R")
3034 "Currently there are many functions in S-PLUS that are missing in R. To
3035 facilitate the conversion of S-PLUS packages to R packages, this package
3036 provides some missing S-PLUS functionality in R.")
3037 (license license:gpl2)))
3039 (define-public r-ifultools
3041 (name "r-ifultools")
3046 (uri (cran-uri "ifultools" version))
3049 "0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"))))
3050 (build-system r-build-system)
3052 `(("r-mass" ,r-mass)
3053 ("r-splus2r" ,r-splus2r)))
3054 (home-page "https://cran.r-project.org/web/packages/ifultools/")
3055 (synopsis "Insightful research tools")
3056 (description "This package provides C code used by the wmtsa, fractal, and
3058 (license license:gpl2)))
3060 (define-public r-sapa
3067 (uri (cran-uri "sapa" version))
3070 "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"))))
3071 (build-system r-build-system)
3073 `(("r-ifultools" ,r-ifultools)
3074 ("r-splus2r" ,r-splus2r)))
3075 (home-page "https://cran.r-project.org/web/packages/sapa/")
3076 (synopsis "Spectral analysis for physical applications")
3077 (description "This package provides software for the book Spectral
3078 Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden,
3079 Cambridge University Press, 1993.")
3080 (license license:gpl2)))
3082 (define-public r-aggregation
3084 (name "r-aggregation")
3089 (uri (cran-uri "aggregation" version))
3092 "0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"))))
3093 (build-system r-build-system)
3094 (home-page "https://cran.r-project.org/web/packages/aggregation/")
3095 (synopsis "Methods for p-value aggregation")
3097 "This package contains functionality for performing the following methods
3098 of p-value aggregation: Fisher's method, the Lancaster method (weighted
3099 Fisher's method), and Sidak correction.")
3100 (license license:gpl3)))
3102 (define-public r-quantmod
3109 (uri (cran-uri "quantmod" version))
3112 "16aldg96z7amp5mr90nb8127yy04gxsihfr26km5p3cx3j117yv0"))))
3113 (build-system r-build-system)
3115 `(("r-curl" ,r-curl)
3119 (home-page "https://cran.r-project.org/web/packages/quantmod/")
3120 (synopsis "Quantitative financial modelling framework")
3121 (description "This package provides a quantitative financial modelling
3122 framework to allow users to specify, build, trade, and analyse quantitative
3123 financial trading strategies.")
3124 (license license:gpl3)))
3126 (define-public r-tseries
3133 (uri (cran-uri "tseries" version))
3136 "14s1glh5zzdvdl05a2z7ymhgf962svxf8xircghg5sc649lb33n0"))))
3137 (build-system r-build-system)
3139 `(("r-quadprog" ,r-quadprog)
3140 ("r-quantmod" ,r-quantmod)
3143 `(("gfortran" ,gfortran)))
3144 (home-page "https://cran.r-project.org/web/packages/tseries/")
3145 (synopsis "Time series analysis and computational finance")
3147 "This package provides functions relating to time series analysis and
3148 computational finance.")
3149 (license license:gpl2)))
3151 (define-public r-wmtsa
3158 (uri (cran-uri "wmtsa" version))
3161 "1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6"))))
3162 (build-system r-build-system)
3164 `(("r-ifultools" ,r-ifultools)
3166 ("r-splus2r" ,r-splus2r)))
3167 (home-page "https://cran.r-project.org/web/packages/wmtsa/")
3168 (synopsis "Wavelet methods for time series analysis")
3170 "This package provides software to accompany the book \"Wavelet Methods
3171 for Time Series Analysis\", Donald B. Percival and Andrew T. Walden, Cambridge
3172 University Press, 2000.")
3173 (license license:gpl2)))
3175 (define-public r-tsa
3182 (uri (cran-uri "TSA" version))
3185 "0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q"))))
3186 (properties `((upstream-name . "TSA")))
3187 (build-system r-build-system)
3189 `(("r-leaps" ,r-leaps)
3190 ("r-locfit" ,r-locfit)
3191 ("r-mgcv" ,r-mgcv)))
3192 (home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm")
3193 (synopsis "Time series analysis")
3195 "This package contains R functions and datasets detailed in the book
3196 \"Time Series Analysis with Applications in R (second edition)\" by Jonathan
3197 Cryer and Kung-Sik Chan.")
3198 (license license:gpl2+)))
3200 (define-public r-extradistr
3202 (name "r-extradistr")
3207 (uri (cran-uri "extraDistr" version))
3210 "00lvqp5bb3iak5myiz4rqm887bkq9sdh7aybmz84mmfni6q01m28"))))
3211 (properties `((upstream-name . "extraDistr")))
3212 (build-system r-build-system)
3214 `(("r-rcpp" ,r-rcpp)))
3215 (home-page "https://github.com/twolodzko/extraDistr")
3216 (synopsis "Additional univariate and multivariate distributions")
3218 "This package implements density, distribution functions, quantile
3219 functions and random generation functions for a large number of univariate and
3220 multivariate distributions.")
3221 (license license:gpl2)))
3223 (define-public r-fractal
3230 (uri (cran-uri "fractal" version))
3233 "18lr9z0gslvfc3z8vyj3krqj3bfhg60zv1fzinrwwkc4cpk1w7mp"))))
3234 (build-system r-build-system)
3236 `(("r-ifultools" ,r-ifultools)
3239 ("r-scatterplot3d" ,r-scatterplot3d)
3240 ("r-splus2r" ,r-splus2r)
3241 ("r-wmtsa" ,r-wmtsa)))
3242 (home-page "https://cran.r-project.org/web/packages/fractal/")
3243 (synopsis "Fractal time series modeling and analysis")
3245 "This package provides tools for stochastic fractal and deterministic
3246 chaotic time series analysis.")
3247 (license license:gpl2)))
3249 (define-public r-urca
3256 (uri (cran-uri "urca" version))
3259 "1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"))))
3260 (build-system r-build-system)
3261 (propagated-inputs `(("r-nlme" ,r-nlme)))
3262 (native-inputs `(("gfortran" ,gfortran)))
3263 (home-page "https://cran.r-project.org/web/packages/urca/")
3264 (synopsis "Unit root and cointegration tests for time series data")
3266 "This package provides unit root and cointegration tests encountered in
3267 applied econometric analysis.")
3268 (license license:gpl2+)))
3270 (define-public r-cubature
3277 (uri (cran-uri "cubature" version))
3280 "10jl5l3xnigiq95829ssq69xbim97k851187dghc30awszcx4clh"))))
3281 (build-system r-build-system)
3283 `(("r-rcpp" ,r-rcpp)))
3284 (home-page "https://github.com/bnaras/cubature")
3285 (synopsis "Adaptive multivariate integration over hypercubes")
3287 "This package is an R wrapper around the cubature C library for adaptive
3288 multivariate integration over hypercubes. This version provides both
3289 @code{hcubature} and @code{pcubature} routines in addition to a vector
3291 ;; The included cubature C library is released under GPLv2+, but the
3292 ;; wrapper declares the license to be GPLv3+.
3293 (license (list license:gpl2+ license:gpl3+))))
3295 (define-public r-trend
3302 (uri (cran-uri "trend" version))
3305 "1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q"))))
3306 (build-system r-build-system)
3308 `(("r-extradistr" ,r-extradistr)))
3310 `(("gfortran" ,gfortran)))
3311 (home-page "https://cran.r-project.org/web/packages/trend/")
3312 (synopsis "Non-parametric trend tests and change-point detection")
3314 "The analysis of environmental data often requires the detection of
3315 trends and change-points. This package includes tests for trend
3316 detection (Cox-Stuart Trend Test, Mann-Kendall Trend Test, (correlated)
3317 Hirsch-Slack Test, partial Mann-Kendall Trend Test, multivariate (multisite)
3318 Mann-Kendall Trend Test, (Seasonal) Sen's slope, partial Pearson and Spearman
3319 correlation trend test), change-point detection (Lanzante's test procedures,
3320 Pettitt's test, Buishand Range Test, Buishand U Test, Standard Normal
3321 Homogeinity Test), detection of non-randomness (Wallis-Moore Phase Frequency
3322 Test, Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test) and the two
3323 sample Robust Rank-Order Distributional Test.")
3324 (license license:gpl3)))
3326 (define-public r-expm
3333 (uri (cran-uri "expm" version))
3336 "04k4a6g071jkjc0d30ncmf713dj16brcs9m6pj43hnycc1caq6si"))))
3337 (build-system r-build-system)
3338 (propagated-inputs `(("r-matrix" ,r-matrix)))
3339 (native-inputs `(("gfortran" ,gfortran)))
3340 (home-page "https://r-forge.r-project.org/projects/expm/")
3341 (synopsis "Tools for matrix exponentials and related quantities")
3343 "This package provides tools for the computation of the matrix
3344 exponential, logarithm, square root, and related quantities.")
3345 (license license:gpl2+)))
3347 (define-public r-complexplus
3349 (name "r-complexplus")
3354 (uri (cran-uri "complexplus" version))
3357 "16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"))))
3358 (build-system r-build-system)
3360 `(("r-expm" ,r-expm)
3361 ("r-matrix" ,r-matrix)))
3362 (home-page "https://cran.r-project.org/web/packages/complexplus/")
3363 (synopsis "Functions of complex or real variables")
3365 "This package extends several functions to the complex domain, including
3366 the matrix exponential and logarithm, and the determinant.")
3367 (license license:gpl2)))
3369 (define-public r-phontools
3371 (name "r-phontools")
3376 (uri (cran-uri "phonTools" version))
3379 "01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"))))
3380 (properties `((upstream-name . "phonTools")))
3381 (build-system r-build-system)
3382 (home-page "http://www.santiagobarreda.com/rscripts.html")
3383 (synopsis "Tools for phonetic and acoustic analyses")
3385 "This package contains tools for the organization, display, and analysis
3386 of the sorts of data frequently encountered in phonetics research and
3387 experimentation, including the easy creation of IPA vowel plots, and the
3388 creation and manipulation of WAVE audio files.")
3389 (license license:bsd-2)))
3398 (uri (cran-uri "np" version))
3401 "1z4jcpx8bbgwslv42wrphfd1qfq965qjn0kmfxm5f6hbbycahcgy"))))
3402 (build-system r-build-system)
3404 `(("r-boot" ,r-boot)
3405 ("r-cubature" ,r-cubature)
3406 ("r-quadprog" ,r-quadprog)
3407 ("r-quantreg" ,r-quantreg)))
3408 (home-page "https://github.com/JeffreyRacine/R-Package-np")
3409 (synopsis "Non-parametric kernel smoothing methods for mixed data types")
3410 (description "This package provides non-parametric (and semi-parametric)
3411 kernel methods that seamlessly handle a mix of continuous, unordered, and
3412 ordered factor data types.")
3413 ;; Any version of the GPL.
3414 (license license:gpl3+)))
3416 (define-public r-powerplus
3418 (name "r-powerplus")
3423 (uri (cran-uri "powerplus" version))
3426 "0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"))))
3427 (build-system r-build-system)
3429 `(("r-complexplus" ,r-complexplus)
3432 ("r-matrix" ,r-matrix)
3433 ("r-phontools" ,r-phontools)))
3434 (home-page "https://cran.r-project.org/web/packages/powerplus/")
3435 (synopsis "Exponentiation operations")
3437 "This package provides tools for the computation of matrix and scalar
3439 (license license:gpl2)))
3441 (define-public r-heatmaply
3443 (name "r-heatmaply")
3448 (uri (cran-uri "heatmaply" version))
3451 "0h8s5djzj4mrmaswlcaap6jbwxrkbzc43bbqik3qf8vrqz335w04"))))
3452 (build-system r-build-system)
3454 `(("r-assertthat" ,r-assertthat)
3455 ("r-colorspace" ,r-colorspace)
3456 ("r-dendextend" ,r-dendextend)
3457 ("r-ggplot2" ,r-ggplot2)
3458 ("r-gplots" ,r-gplots)
3459 ("r-htmlwidgets" ,r-htmlwidgets)
3460 ("r-knitr" ,r-knitr) ; needed for vignettes
3461 ("r-magrittr" ,r-magrittr)
3462 ("r-plotly" ,r-plotly)
3463 ("r-rcolorbrewer" ,r-rcolorbrewer)
3464 ("r-reshape2" ,r-reshape2)
3465 ("r-scales" ,r-scales)
3466 ("r-seriation" ,r-seriation)
3467 ("r-viridis" ,r-viridis)
3468 ("r-webshot" ,r-webshot)))
3469 (home-page "https://cran.r-project.org/package=heatmaply")
3470 (synopsis "Interactive cluster heat maps using plotly")
3472 "This package enables you to create interactive cluster heatmaps that can
3473 be saved as a stand-alone HTML file, embedded in R Markdown documents or in a
3474 Shiny app, and made available in the RStudio viewer pane. Hover the mouse
3475 pointer over a cell to show details or drag a rectangle to zoom. A heatmap is
3476 a popular graphical method for visualizing high-dimensional data, in which a
3477 table of numbers is encoded as a grid of colored cells. The rows and columns
3478 of the matrix are ordered to highlight patterns and are often accompanied by
3480 ;; Either version of the license.
3481 (license (list license:gpl2 license:gpl3))))
3490 (uri (cran-uri "h5" version))
3493 "14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx"))))
3494 (build-system r-build-system)
3499 `(("which" ,which)))
3501 `(("r-rcpp" ,r-rcpp)))
3502 (home-page "https://github.com/mannau/h5")
3503 (synopsis "Interface to the HDF5 Library")
3505 "This package provides an S4 interface to the HDF5 library supporting
3506 fast storage and retrieval of R-objects like vectors, matrices and arrays to
3507 binary files in a language independent format. The HDF5 format can therefore
3508 be used as an alternative to R's save/load mechanism. Since h5 is able to
3509 access only subsets of stored data it can also handle data sets which do not
3511 (license license:bsd-2)))
3513 (define-public r-cgdsr
3520 (uri (cran-uri "cgdsr" version))
3523 "1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23"))))
3524 (build-system r-build-system)
3526 `(("r-r-methodss3" ,r-r-methodss3)
3527 ("r-r-oo" ,r-r-oo)))
3528 (home-page "https://github.com/cBioPortal/cgdsr")
3529 (synopsis "R-based API for accessing the MSKCC Cancer Genomics Data Server")
3531 "This package provides a basic set of R functions for querying the Cancer
3532 Genomics Data Server (CGDS), hosted by the Computational Biology Center at
3533 Memorial-Sloan-Kettering Cancer Center (MSKCC).")
3534 (license license:lgpl3)))
3536 (define-public r-import
3543 (uri (cran-uri "import" version))
3546 "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"))))
3547 (build-system r-build-system)
3548 (home-page "https://github.com/smbache/import")
3549 (synopsis "Import mechanism for R")
3551 "This is an alternative mechanism for importing objects from packages.
3552 The syntax allows for importing multiple objects from a package with a single
3553 command in an expressive way. The import package bridges some of the gap
3554 between using @code{library} (or @code{require}) and direct (single-object)
3555 imports. Furthermore the imported objects are not placed in the current
3556 environment. It is also possible to import objects from stand-alone @code{.R}
3558 (license license:expat)))
3560 (define-public r-shinyace
3567 (uri (cran-uri "shinyAce" version))
3570 "1fbk5i6w6cpam8s3acf4bgdp8hajn4digjjix3i6i4q3p2rvn6zx"))))
3571 (properties `((upstream-name . "shinyAce")))
3572 (build-system r-build-system)
3574 `(("r-shiny" ,r-shiny)
3575 ("r-jsonlite" ,r-jsonlite)))
3576 (home-page "http://cran.r-project.org/web/packages/shinyAce")
3577 (synopsis "Ace editor bindings for Shiny")
3579 "This package provides Ace editor bindings to enable a rich text editing
3580 environment within Shiny.")
3581 (license license:expat)))
3583 (define-public r-radiant-data
3585 (name "r-radiant-data")
3590 (uri (cran-uri "radiant.data" version))
3593 "1f98ahki0kyb27gl55a859zb0lsvk9gddd9f54y767xfs6h89cgk"))
3594 (modules '((guix build utils)))
3597 ;; Delete files that are under CC-NC-SA.
3598 (delete-file-recursively "inst/app/tools/help")
3600 (properties `((upstream-name . "radiant.data")))
3601 (build-system r-build-system)
3603 `(("r-base64enc" ,r-base64enc)
3604 ("r-broom" ,r-broom)
3607 ("r-dplyr" ,r-dplyr)
3610 ("r-ggplot2" ,r-ggplot2)
3611 ("r-gridextra" ,r-gridextra)
3612 ("r-import" ,r-import)
3613 ("r-jsonlite" ,r-jsonlite)
3614 ("r-knitr" ,r-knitr)
3615 ("r-lubridate" ,r-lubridate)
3616 ("r-magrittr" ,r-magrittr)
3617 ("r-markdown" ,r-markdown)
3618 ("r-plotly" ,r-plotly)
3619 ("r-psych" ,r-psych)
3620 ("r-readr" ,r-readr)
3621 ("r-readxl" ,r-readxl)
3622 ("r-rlang" ,r-rlang)
3623 ("r-rmarkdown" ,r-rmarkdown)
3624 ("r-rstudioapi" ,r-rstudioapi)
3625 ("r-scales" ,r-scales)
3626 ("r-shiny" ,r-shiny)
3627 ("r-shinyfiles" ,r-shinyfiles)
3628 ("r-shinyace" ,r-shinyace)
3629 ("r-summarytools" ,r-summarytools)
3630 ("r-tibble" ,r-tibble)
3631 ("r-tidyr" ,r-tidyr)
3632 ("r-writexl" ,r-writexl)))
3633 (home-page "https://github.com/radiant-rstats/radiant.data")
3634 (synopsis "Data menu for Radiant: business analytics using R and Shiny")
3636 "The Radiant Data menu includes interfaces for loading, saving, viewing,
3637 visualizing, summarizing, transforming, and combining data. It also contains
3638 functionality to generate reproducible reports of the analyses conducted in
3640 (license license:agpl3)))
3642 (define-public r-algdesign
3644 (name "r-algdesign")
3649 (uri (cran-uri "AlgDesign" version))
3652 "0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"))))
3653 (properties `((upstream-name . "AlgDesign")))
3654 (build-system r-build-system)
3655 (home-page "https://github.com/jvbraun/AlgDesign")
3656 (synopsis "Algorithmic experimental design")
3658 "This package provides tools to calculate exact and approximate theory
3659 experimental designs for D, A, and I criteria. Very large designs may be
3660 created. Experimental designs may be blocked or blocked designs created from
3661 a candidate list, using several criteria. The blocking can be done when whole
3662 and within plot factors interact.")
3663 (license license:gpl2+)))
3665 (define-public r-signal
3672 (uri (cran-uri "signal" version))
3675 "1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"))))
3676 (build-system r-build-system)
3677 (propagated-inputs `(("r-mass" ,r-mass)))
3678 (native-inputs `(("gfortran" ,gfortran)))
3679 (home-page "https://cran.r-project.org/web/packages/signal/")
3680 (synopsis "Signal processing")
3682 "This package provides a set of signal processing functions originally
3683 written for Matlab and GNU Octave. It includes filter generation utilities,
3684 filtering functions, resampling routines, and visualization of filter models.
3685 It also includes interpolation functions.")
3686 (license license:gpl2)))
3688 (define-public r-gsubfn
3695 (uri (cran-uri "gsubfn" version))
3698 "00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"))))
3699 (build-system r-build-system)
3700 (propagated-inputs `(("r-proto" ,r-proto)))
3701 (home-page "http://gsubfn.googlecode.com")
3702 (synopsis "Utilities for strings and function arguments.")
3704 "This package provides @code{gsubfn} which is like @code{gsub} but can
3705 take a replacement function or certain other objects instead of the
3706 replacement string. Matches and back references are input to the replacement
3707 function and replaced by the function output. @code{gsubfn} can be used to
3708 split strings based on content rather than delimiters and for quasi-perl-style
3709 string interpolation. The package also has facilities for translating
3710 formulas to functions and allowing such formulas in function calls instead of
3712 (license license:gpl2+)))
3714 (define-public r-sqldf
3721 (uri (cran-uri "sqldf" version))
3724 "0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"))))
3725 (build-system r-build-system)
3727 `(("r-chron" ,r-chron)
3729 ("r-gsubfn" ,r-gsubfn)
3730 ("r-proto" ,r-proto)
3731 ("r-rsqlite" ,r-rsqlite)))
3732 (home-page "https://github.com/ggrothendieck/sqldf")
3733 (synopsis "Manipulate R data frames using SQL")
3735 "The @code{sqldf} function is typically passed a single argument which is
3736 an SQL select statement where the table names are ordinary R data frame names.
3737 @code{sqldf} transparently sets up a database, imports the data frames into
3738 that database, performs the SQL statement and returns the result using a
3739 heuristic to determine which class to assign to each column of the returned
3740 data frame. The @code{sqldf} or @code{read.csv.sql} functions can also be
3741 used to read filtered files into R even if the original files are larger than
3742 R itself can handle.")
3743 (license license:gpl2)))
3745 (define-public r-abind
3752 (uri (cran-uri "abind" version))
3755 "0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"))))
3756 (build-system r-build-system)
3757 (home-page "https://cran.r-project.org/web/packages/abind/")
3758 (synopsis "Combine multidimensional arrays")
3760 "This package provides tools to combine multidimensional arrays into a
3761 single array. This is a generalization of @code{cbind} and @code{rbind}. It
3762 works with vectors, matrices, and higher-dimensional arrays. It also provides
3763 the functions @code{adrop}, @code{asub}, and @code{afill} for manipulating,
3764 extracting and replacing data in arrays.")
3765 (license license:lgpl2.0+)))
3767 (define-public r-prroc
3774 (uri (cran-uri "PRROC" version))
3777 "1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"))))
3778 (properties `((upstream-name . "PRROC")))
3779 (build-system r-build-system)
3780 (home-page "https://cran.r-project.org/web/packages/PRROC/")
3781 (synopsis "Precision-Recall and ROC curves for weighted and unweighted data")
3783 "This package computes the areas under the @dfn{precision-recall} (PR)
3784 and ROC curve for weighted (e.g. soft-labeled) and unweighted data. In
3785 contrast to other implementations, the interpolation between points of the PR
3786 curve is done by a non-linear piecewise function. In addition to the areas
3787 under the curves, the curves themselves can also be computed and plotted by a
3788 specific S3-method.")
3789 (license license:gpl3)))
3791 (define-public r-vim
3798 (uri (cran-uri "VIM" version))
3801 "1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd"))))
3802 (properties `((upstream-name . "VIM")))
3803 (build-system r-build-system)
3806 ("r-colorspace" ,r-colorspace)
3807 ("r-data-table" ,r-data-table)
3808 ("r-e1071" ,r-e1071)
3809 ("r-laeken" ,r-laeken)
3813 ("r-robustbase" ,r-robustbase)
3816 (home-page "https://github.com/alexkowa/VIM")
3817 (synopsis "Visualization and imputation of missing values")
3819 "This package provides tools for the visualization of missing and/or
3820 imputed values are introduced, which can be used for exploring the data and
3821 the structure of the missing and/or imputed values. Depending on this
3822 structure of the missing values, the corresponding methods may help to
3823 identify the mechanism generating the missing values and allows to explore the
3824 data including missing values. In addition, the quality of imputation can be
3825 visually explored using various univariate, bivariate, multiple and
3826 multivariate plot methods.")
3827 (license license:gpl2+)))
3829 (define-public r-fnn
3836 (uri (cran-uri "FNN" version))
3839 "1n61jrcmakqif8f827x4qnlhm2jqpj5fgjj65c4p0kdd8lzw8pqp"))))
3840 (properties `((upstream-name . "FNN")))
3841 (build-system r-build-system)
3842 (home-page "https://cran.r-project.org/web/packages/FNN")
3843 (synopsis "Fast nearest neighbor search algorithms and applications")
3845 "This package provides cover-tree and kd-tree fast k-nearest neighbor
3846 search algorithms. Related applications including KNN classification,
3847 regression and information measures are implemented.")
3848 ;; The DESCRIPTION file erroneously states that GPL version 2.1 or
3849 ;; later can be used.
3850 (license license:gpl2+)))
3852 (define-public r-smoother
3859 (uri (cran-uri "smoother" version))
3862 "0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"))))
3863 (build-system r-build-system)
3865 `(("r-ttr" ,r-ttr)))
3866 (home-page "http://cran.r-project.org/web/packages/smoother")
3867 (synopsis "Functions relating to the smoothing of numerical data")
3869 "This package provides a collection of methods for smoothing numerical
3870 data, commencing with a port of the Matlab gaussian window smoothing function.
3871 In addition, several functions typically used in smoothing of financial data
3873 (license license:gpl2)))
3875 (define-public r-riverplot
3877 (name "r-riverplot")
3882 (uri (cran-uri "riverplot" version))
3885 "0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z"))))
3886 (build-system r-build-system)
3887 (home-page "https://logfc.wordpress.com")
3888 (synopsis "Sankey or ribbon plots")
3890 "Sankey plots are a type of diagram that is convenient to illustrate how
3891 flow of information, resources etc. separates and joins, much like observing
3892 how rivers split and merge. For example, they can be used to compare
3893 different clusterings. This package provides an implementation of Sankey
3895 (license license:gpl2+)))
3897 (define-public r-dyn
3904 (uri (cran-uri "dyn" version))
3907 "16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"))))
3908 (build-system r-build-system)
3910 `(("r-zoo" ,r-zoo)))
3911 (home-page "https://cran.r-project.org/web/packages/dyn")
3912 (synopsis "Time series regression")
3914 "This package provides the dyn class interfaces @code{ts}, @code{irts},
3915 @code{zoo} and @code{zooreg} time series classes to @code{lm}, @code{glm},
3916 @code{loess}, @code{quantreg::rq}, @code{MASS::rlm},
3917 @code{MCMCpack::MCMCregress()}, @code{quantreg::rq()},
3918 @code{randomForest::randomForest()} and other regression functions, allowing
3919 those functions to be used with time series including specifications that may
3920 contain lags, diffs and missing values.")
3922 (license license:gpl2+)))
3924 (define-public r-catdap
3931 (uri (cran-uri "catdap" version))
3934 "0i877l61f6c75pczi235rzci67w29zv1d7z5zn5p5ymndclvlpl2"))))
3935 (build-system r-build-system)
3937 `(("gfortran" ,gfortran)))
3938 (home-page "https://cran.r-project.org/web/packages/catdap/")
3939 (synopsis "Tools for categorical data analysis")
3941 "This package provides functions for analyzing multivariate data.
3942 Dependencies of the distribution of the specified variable (response
3943 variable) to other variables (explanatory variables) are derived and
3944 evaluated by the @dfn{Akaike Information Criterion} (AIC).")
3945 (license license:gpl2+)))
3947 (define-public r-arules
3954 (uri (cran-uri "arules" version))
3957 "0glfqgxr87900kigmkby2ff7qrjvd6aq595q85y056i5ckjcp615"))))
3958 (build-system r-build-system)
3960 `(("r-matrix" ,r-matrix)))
3961 (home-page "https://github.com/mhahsler/arules")
3962 (synopsis "Mining association rules and frequent itemsets")
3964 "This package provides an infrastructure for representing, manipulating
3965 and analyzing transaction data and patterns (frequent itemsets and association rules).
3966 It also provides C implementations of the association mining algorithms Apriori
3968 (license license:gpl3)))
3970 (define-public r-parsedate
3972 (name "r-parsedate")
3977 (uri (cran-uri "parsedate" version))
3980 "0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002"))))
3981 (build-system r-build-system)
3982 (home-page "https://github.com/gaborcsardi/parsedate")
3984 "Recognize and parse dates in various formats")
3986 "This package provides three functions for dealing with dates:
3987 @code{parse_iso_8601} recognizes and parses all valid ISO 8601 date and
3988 time formats, @code{parse_date} parses dates in unspecified formats,
3989 and @code{format_iso_8601} formats a date in ISO 8601 format.")
3990 (license license:gpl2)))
3992 (define-public r-abc-data
3999 (uri (cran-uri "abc.data" version))
4002 "1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"))))
4003 (properties `((upstream-name . "abc.data")))
4004 (build-system r-build-system)
4005 (home-page "https://cran.r-project.org/web/packages/abc.data/")
4006 (synopsis "Data for Approximate Bayesian Computation (ABC) package")
4008 "This package contains data which are used by functions of the abc
4009 package which implements several @dfn{Approximate Bayesian Computation} (ABC)
4010 algorithms for performing parameter estimation, model selection, and
4012 (license license:gpl3+)))
4014 (define-public r-abc
4021 (uri (cran-uri "abc" version))
4024 "0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"))))
4025 (build-system r-build-system)
4027 `(("r-abc-data" ,r-abc-data)
4028 ("r-locfit" ,r-locfit)
4031 ("r-quantreg" ,r-quantreg)))
4032 (home-page "https://cran.r-project.org/web/packages/abc/")
4033 (synopsis "Tools for Approximate Bayesian Computation (ABC)")
4035 "This package implements several @dfn{Approximate Bayesian
4036 Computation} (ABC) algorithms for performing parameter estimation, model
4037 selection, and goodness-of-fit. Cross-validation tools are also available for
4038 measuring the accuracy of ABC estimates, and to calculate the
4039 misclassification probabilities of different models.")
4040 (license license:gpl3+)))
4042 (define-public r-zip
4049 (uri (cran-uri "zip" version))
4052 "0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg"))))
4053 (build-system r-build-system)
4054 (home-page "https://github.com/gaborcsardi/zip")
4055 (synopsis "Cross-platform Zip compression")
4057 "This package provides a cross-platform Zip compression library for R.
4058 It is a replacement for the @code{zip} function, that does not require any
4059 additional external tools on any platform.")
4060 (license license:cc0)))
4062 (define-public r-openxlsx
4069 (uri (cran-uri "openxlsx" version))
4072 "1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb"))))
4073 (build-system r-build-system)
4075 `(("r-rcpp" ,r-rcpp)
4077 (home-page "https://github.com/awalker89/openxlsx")
4078 (synopsis "Read, write and edit XLSX files")
4080 "This package simplifies the creation of Excel @code{.xlsx} files by
4081 providing a high level interface to writing, styling and editing worksheets.
4082 Through the use of Rcpp, read/write times are comparable to the @code{xlsx}
4083 and @code{XLConnect} packages with the added benefit of removing the
4084 dependency on Java.")
4085 (license license:gpl3)))
4087 (define-public r-rio
4094 (uri (cran-uri "rio" version))
4097 "158xg3vj0glk3fslwi6fywwmfym2b6kn3fdmjligdfy5lf68khix"))))
4098 (build-system r-build-system)
4100 `(("r-curl" ,r-curl)
4101 ("r-data-table" ,r-data-table)
4102 ("r-foreign" ,r-foreign)
4103 ("r-haven" ,r-haven)
4104 ("r-openxlsx" ,r-openxlsx)
4105 ("r-readxl" ,r-readxl)
4106 ("r-tibble" ,r-tibble)))
4107 (home-page "https://github.com/leeper/rio")
4108 (synopsis "Swiss-army knife for data I/O")
4110 "This package provides streamlined data import and export infrastructure
4111 by making assumptions that the user is probably willing to make: @code{import}
4112 and @code{export} determine the data structure from the file extension,
4113 reasonable defaults are used for data import and export (e.g.,
4114 @code{stringsAsFactors=FALSE}), web-based import is natively
4115 supported (including from SSL/HTTPS), compressed files can be read directly
4116 without explicit decompression, and fast import packages are used where
4117 appropriate. An additional convenience function, @code{convert}, provides a
4118 simple method for converting between file types.")
4119 (license license:gpl2)))
4121 (define-public r-maptools
4128 (uri (cran-uri "maptools" version))
4131 "1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k"))))
4132 (build-system r-build-system)
4134 `(("r-foreign" ,r-foreign)
4135 ("r-lattice" ,r-lattice)
4137 (home-page "http://r-forge.r-project.org/projects/maptools/")
4138 (synopsis "Tools for reading and handling spatial objects")
4140 "This package provides a set of tools for manipulating and reading
4141 geographic data, in particular ESRI Shapefiles. It includes binary access to
4142 GSHHG shoreline files. The package also provides interface wrappers for
4143 exchanging spatial objects with other R packages.")
4144 ;; The C source files from shapelib are released under the Expat license.
4145 ;; The R code is released under GPL version 2 or later.
4146 (license (list license:gpl2+
4149 (define-public r-later
4156 (uri (cran-uri "later" version))
4159 "0xhwn37makzm85zb6w5acc7svzibxcnz69rks0kxw22vapkxwz1i"))))
4160 (build-system r-build-system)
4164 ("r-rlang" ,r-rlang)))
4165 (home-page "https://github.com/r-lib/later")
4166 (synopsis "Utilities for delaying function execution")
4168 "This package provides tools to execute arbitrary R or C functions some
4169 time after the current time, after the R execution stack has emptied.")
4170 (license license:gpl2+)))
4172 (define-public r-promises
4179 (uri (cran-uri "promises" version))
4182 "0n2mlv6bvfb4yhgcml696l9vkbw21pz0smqylivr606z99rwgny2"))))
4183 (build-system r-build-system)
4185 `(("r-later" ,r-later)
4186 ("r-magrittr" ,r-magrittr)
4189 ("r-rlang" ,r-rlang)))
4190 (home-page "https://rstudio.github.io/promises")
4191 (synopsis "Abstractions for promise-based asynchronous programming")
4193 "This package provides fundamental abstractions for doing asynchronous
4194 programming in R using promises. Asynchronous programming is useful for
4195 allowing a single R process to orchestrate multiple tasks in the background
4196 while also attending to something else. Semantics are similar to JavaScript
4197 promises, but with a syntax that is idiomatic R.")
4198 (license license:expat)))
4200 (define-public r-dosnow
4207 (uri (cran-uri "doSNOW" version))
4210 "13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n"))))
4211 (properties `((upstream-name . "doSNOW")))
4212 (build-system r-build-system)
4214 `(("r-foreach" ,r-foreach)
4215 ("r-iterators" ,r-iterators)
4216 ("r-snow" ,r-snow)))
4217 (home-page "https://cran.r-project.org/web/packages/doSNOW")
4218 (synopsis "Foreach parallel adaptor for the snow package")
4220 "This package provides a parallel backend for the @code{%dopar%} function
4221 using the @code{snow} package.")
4222 (license license:gpl2)))
4224 (define-public r-snowfall
4227 (version "1.84-6.1")
4230 (uri (cran-uri "snowfall" version))
4232 (base32 "13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"))))
4233 (build-system r-build-system)
4235 `(("r-snow" ,r-snow)))
4236 (home-page "http://cran.r-project.org/web/packages/snowfall/")
4237 (synopsis "Easier cluster computing")
4238 (description "This package is a usability wrapper around snow for easier
4239 development of parallel R programs. This package offers e.g. extended error
4240 checks, and additional functions. All functions work in sequential mode, too,
4241 if no cluster is present or wished. The package is also designed as connector
4242 to the cluster management tool @code{sfCluster}, but can also used without
4244 (license license:gpl2+)))
4246 (define-public r-rappdirs
4253 (uri (cran-uri "rappdirs" version))
4256 "0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"))))
4257 (build-system r-build-system)
4258 (home-page "https://cran.r-project.org/web/packages/rappdirs/")
4259 (synopsis "Determine where to save data, caches, and logs")
4261 "This package provides an easy way to determine which directories on the
4262 user's computer should be used to save data, caches and logs. It is a port of
4263 Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
4264 (license license:expat)))
4266 (define-public r-learnr
4273 (uri (cran-uri "learnr" version))
4276 "0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5"))))
4277 (build-system r-build-system)
4279 `(("r-evaluate" ,r-evaluate)
4280 ("r-htmltools" ,r-htmltools)
4281 ("r-htmlwidgets" ,r-htmlwidgets)
4282 ("r-jsonlite" ,r-jsonlite)
4283 ("r-knitr" ,r-knitr)
4284 ("r-markdown" ,r-markdown)
4285 ("r-rappdirs" ,r-rappdirs)
4286 ("r-rmarkdown" ,r-rmarkdown)
4287 ("r-rprojroot" ,r-rprojroot)
4288 ("r-shiny" ,r-shiny)
4289 ("r-withr" ,r-withr)))
4290 (home-page "https://rstudio.github.io/learnr/")
4291 (synopsis "Interactive tutorials for R")
4293 "This package provides tools to create interactive tutorials using R
4294 Markdown. Use a combination of narrative, figures, videos, exercises, and
4295 quizzes to create self-paced tutorials for learning about R and R packages.")
4296 (license license:asl2.0)))
4298 (define-public r-analytics
4300 (name "r-analytics")
4305 (uri (cran-uri "analytics" version))
4308 "0js3c8lwj3knccb55nq03cbjlf4w390p9aid2mi5x80l3ayd9in1"))))
4309 (build-system r-build-system)
4312 ("r-cluster" ,r-cluster)
4313 ("r-fractal" ,r-fractal)
4314 ("r-lmtest" ,r-lmtest)
4317 ("r-powerplus" ,r-powerplus)
4318 ("r-robust" ,r-robust)
4319 ("r-trend" ,r-trend)
4323 (home-page "https://cran.r-project.org/web/packages/analytics/")
4324 (synopsis "Collection of data analysis tools")
4326 "This package is a collection of data analysis tools. It includes tools
4327 for regression outlier detection in a fitted linear model, stationary
4328 bootstrap using a truncated geometric distribution, a comprehensive test for
4329 weak stationarity, column means by group, weighted biplots, and a heuristic to
4330 obtain a better initial configuration in non-metric MDS.")
4331 (license license:gpl2)))
4333 (define-public r-reticulate
4335 (name "r-reticulate")
4340 (uri (cran-uri "reticulate" version))
4343 "0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq"))))
4344 (build-system r-build-system)
4345 (inputs `(("python" ,python)))
4347 `(("r-jsonlite" ,r-jsonlite)
4348 ("r-matrix" ,r-matrix)
4349 ("r-rcpp" ,r-rcpp)))
4350 (home-page "https://github.com/rstudio/reticulate")
4351 (synopsis "R interface to Python")
4353 "This package provides an interface from R to Python modules, classes,
4354 and functions. When calling into Python, R data types are automatically
4355 converted to their equivalent Python types. When values are returned from
4356 Python to R they are converted back to R types.")
4357 (license license:asl2.0)))
4359 (define-public r-bibtex
4366 (uri (cran-uri "bibtex" version))
4369 "0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"))))
4370 (build-system r-build-system)
4371 (propagated-inputs `(("r-stringr" ,r-stringr)))
4372 (home-page "https://github.com/romainfrancois/bibtex")
4373 (synopsis "Bibtex parser")
4374 (description "This package provides a utility for R to parse a bibtex
4376 (license license:gpl2+)))
4378 (define-public r-ggseqlogo
4380 (name "r-ggseqlogo")
4385 (uri (cran-uri "ggseqlogo" version))
4388 "13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"))))
4389 (build-system r-build-system)
4390 (propagated-inputs `(("r-ggplot2" ,r-ggplot2)))
4391 (home-page "https://github.com/omarwagih/ggseqlogo")
4392 (synopsis "ggplot2 extension for drawing genetic sequence logos")
4394 "The range of functions provided by this package makes it possible to
4395 draw highly versatile genomic sequence logos. Features include, but are not
4396 limited to, modifying colour schemes and fonts used to draw the logo,
4397 generating multiple logo plots, and aiding the visualisation with annotations.
4398 Sequence logos can easily be combined with other ggplot2 plots.")
4399 ;; Unspecified version of the LGPL.
4400 (license license:lgpl3+)))
4402 (define-public r-ggsci
4409 (uri (cran-uri "ggsci" version))
4412 "0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"))))
4413 (build-system r-build-system)
4415 `(("r-ggplot2" ,r-ggplot2)
4416 ("r-scales" ,r-scales)))
4417 (home-page "https://nanx.me/ggsci/")
4418 (synopsis "Scientific journal and sci-fi themed color palettes for ggplot2")
4420 "This package provides a collection of ggplot2 color palettes inspired by
4421 plots in scientific journals, data visualization libraries, science fiction
4422 movies, and TV shows.")
4423 (license license:gpl3)))
4425 (define-public r-ggsignif
4432 (uri (cran-uri "ggsignif" version))
4435 "1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"))))
4436 (build-system r-build-system)
4438 `(("r-ggplot2" ,r-ggplot2)))
4439 (home-page "https://github.com/const-ae/ggsignif")
4440 (synopsis "Significance brackets for ggplot2")
4442 "Enrich your ggplots with group-wise comparisons. This package provides
4443 an easy way to indicate if two groups are significantly different. Commonly
4444 this is shown by a bracket on top connecting the groups of interest which
4445 itself is annotated with the level of significance. The package provides a
4446 single layer that takes the groups for comparison and the test as arguments
4447 and adds the annotation to the plot.")
4448 (license license:gpl3)))
4450 (define-public r-ggpubr
4457 (uri (cran-uri "ggpubr" version))
4460 "0rkpcjb1x7lvhj68aam5airbi534jqyiq12x5xk40a25iifhghq6"))))
4461 (build-system r-build-system)
4463 `(("r-cowplot" ,r-cowplot)
4464 ("r-dplyr" ,r-dplyr)
4465 ("r-ggplot2" ,r-ggplot2)
4466 ("r-ggrepel" ,r-ggrepel)
4467 ("r-ggsci" ,r-ggsci)
4468 ("r-ggsignif" ,r-ggsignif)
4470 ("r-gridextra" ,r-gridextra)
4471 ("r-magrittr" ,r-magrittr)
4472 ("r-polynom" ,r-polynom)
4473 ("r-purrr" ,r-purrr)
4474 ("r-scales" ,r-scales)
4475 ("r-tidyr" ,r-tidyr)))
4476 (home-page "http://www.sthda.com/english/rpkgs/ggpubr")
4477 (synopsis "ggplot2-based publication-ready plots")
4479 "The ggplot2 package is an excellent and flexible package for elegant
4480 data visualization in R. However the default generated plots require some
4481 formatting before we can send them for publication. The ggpubr package
4482 provides some easy-to-use functions for creating and customizing ggplot2-based
4483 publication-ready plots.")
4484 (license license:gpl2)))
4486 (define-public r-ellipse
4493 (uri (cran-uri "ellipse" version))
4496 "0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"))))
4497 (build-system r-build-system)
4498 (home-page "https://cran.r-project.org/web/packages/ellipse/")
4499 (synopsis "Functions for drawing ellipses and ellipse-like confidence regions")
4501 "This package contains various routines for drawing ellipses and
4502 ellipse-like confidence regions, implementing the plots described in Murdoch
4503 and Chow (1996), A graphical display of large correlation matrices, The
4504 American Statistician 50, 178-180. There are also routines implementing the
4505 profile plots described in Bates and Watts (1988), Nonlinear Regression
4506 Analysis and its Applications.")
4507 (license license:gpl2+)))
4509 (define-public r-flashclust
4511 (name "r-flashclust")
4516 (uri (cran-uri "flashClust" version))
4519 "0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"))))
4520 (properties `((upstream-name . "flashClust")))
4521 (build-system r-build-system)
4522 (native-inputs `(("gfortran" ,gfortran)))
4523 (home-page "https://cran.r-project.org/web/packages/flashClust/")
4524 (synopsis "Implementation of optimal hierarchical clustering")
4526 "This package provides a fast implementation of hierarchical
4528 (license license:gpl2+)))
4530 (define-public r-factominer
4532 (name "r-factominer")
4537 (uri (cran-uri "FactoMineR" version))
4540 "1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"))))
4541 (properties `((upstream-name . "FactoMineR")))
4542 (build-system r-build-system)
4545 ("r-cluster" ,r-cluster)
4546 ("r-ellipse" ,r-ellipse)
4547 ("r-flashclust" ,r-flashclust)
4548 ("r-lattice" ,r-lattice)
4549 ("r-leaps" ,r-leaps)
4551 ("r-scatterplot3d" ,r-scatterplot3d)))
4552 (home-page "http://factominer.free.fr")
4553 (synopsis "Multivariate exploratory data analysis and data mining")
4555 "This package provides exploratory data analysis methods to summarize,
4556 visualize and describe datasets. The main principal component methods are
4557 available, those with the largest potential in terms of applications:
4558 principal component analysis (PCA) when variables are quantitative,
4559 correspondence analysis (CA) and multiple correspondence analysis (MCA) when
4560 variables are categorical, Multiple Factor Analysis when variables are
4561 structured in groups, etc. and hierarchical cluster analysis.")
4562 (license license:gpl2+)))
4564 (define-public r-factoextra
4566 (name "r-factoextra")
4571 (uri (cran-uri "factoextra" version))
4574 "1l6m8k7qhdw8ndar8nhmym0lfyd1i2iszl1cicjax0vq23ss6xw1"))))
4575 (build-system r-build-system)
4577 `(("r-abind" ,r-abind)
4578 ("r-cluster" ,r-cluster)
4579 ("r-dendextend" ,r-dendextend)
4580 ("r-factominer" ,r-factominer)
4581 ("r-ggplot2" ,r-ggplot2)
4582 ("r-ggpubr" ,r-ggpubr)
4583 ("r-ggrepel" ,r-ggrepel)
4584 ("r-reshape2" ,r-reshape2)
4585 ("r-tidyr" ,r-tidyr)))
4586 (home-page "http://www.sthda.com/english/rpkgs/factoextra")
4587 (synopsis "Extract and visualize the results of multivariate data analyses")
4589 "This package provides some easy-to-use functions to extract and
4590 visualize the output of multivariate data analyses, including
4591 @code{PCA} (Principal Component Analysis), @code{CA} (Correspondence
4592 Analysis), @code{MCA} (Multiple Correspondence Analysis), @code{FAMD} (Factor
4593 Analysis of Mixed Data), @code{MFA} (Multiple Factor Analysis) and
4594 @code{HMFA} (Hierarchical Multiple Factor Analysis) functions from different R
4595 packages. It contains also functions for simplifying some clustering analysis
4596 steps and provides ggplot2-based elegant data visualization.")
4597 (license license:gpl2)))
4599 (define-public r-fansi
4606 (uri (cran-uri "fansi" version))
4609 "02f2rx7v7wz6w97m2slwky2i5y8f9iafycmkyr3siy3z3k8fj171"))))
4610 (build-system r-build-system)
4612 `(("r-knitr" ,r-knitr))) ; for vignettes
4613 (home-page "https://github.com/brodieG/fansi")
4614 (synopsis "ANSI control sequence aware string functions")
4616 "This package provides counterparts to R string manipulation functions
4617 that account for the effects of ANSI text formatting control sequences.")
4618 (license license:gpl2+)))
4620 (define-public r-nbclust
4627 (uri (cran-uri "NbClust" version))
4630 "1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"))))
4631 (properties `((upstream-name . "NbClust")))
4632 (build-system r-build-system)
4633 (home-page "https://sites.google.com/site/malikacharrad/research/nbclust-package")
4634 (synopsis "Determine the best number of clusters in a data set")
4636 "NbClust provides 30 indexes for determining the optimal number of
4637 clusters in a data set and offers the best clustering scheme from different
4638 results to the user.")
4639 (license license:gpl2)))
4641 (define-public r-hdf5r
4648 (uri (cran-uri "hdf5r" version))
4651 "0h222q80li8rs3cv4c5lvv3g91ygd51w43ay6fwyk9q9d315vwrj"))))
4652 (build-system r-build-system)
4657 `(("r-bit64" ,r-bit64)
4659 (home-page "https://hhoeflin.github.io/hdf5r")
4660 (synopsis "Interface to the HDF5 binary data format")
4662 "HDF5 is a data model, library and file format for storing and managing
4663 large amounts of data. This package provides a nearly feature complete,
4664 object oriented wrapper for the HDF5 API using R6 classes. Additionally,
4665 functionality is added so that HDF5 objects behave very similar to their
4666 corresponding R counterparts.")
4667 (license license:asl2.0)))
4669 (define-public r-itertools
4671 (name "r-itertools")
4676 (uri (cran-uri "itertools" version))
4679 "1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"))))
4680 (build-system r-build-system)
4682 `(("r-iterators" ,r-iterators)))
4683 (home-page "https://cran.r-project.org/web/packages/itertools/")
4684 (synopsis "Iterator tools")
4686 "This package provides various tools for creating iterators, many
4687 patterned after functions in the Python @code{itertools} module, and others
4688 patterned after functions in the snow package.")
4689 (license license:gpl2)))
4691 (define-public r-polynom
4698 (uri (cran-uri "polynom" version))
4701 "1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk"))))
4702 (build-system r-build-system)
4703 (home-page "https://cran.r-project.org/web/packages/polynom/")
4704 (synopsis "Functions for univariate polynomial manipulations")
4706 "This package provides a collection of functions to implement a class for
4707 univariate polynomial manipulations.")
4708 (license license:gpl2)))
4710 (define-public r-gbrd
4717 (uri (cran-uri "gbRd" version))
4720 "06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"))))
4721 (properties `((upstream-name . "gbRd")))
4722 (build-system r-build-system)
4723 (home-page "https://cran.r-project.org/web/packages/gbRd/")
4724 (synopsis "Utilities for processing Rd objects and files")
4726 "This package provides utilities for processing Rd objects and files.
4727 Extract argument descriptions and other parts of the help pages of
4729 (license license:gpl2+)))
4731 (define-public r-rjags
4738 (uri (cran-uri "rjags" version))
4741 "17xmjksj69f9wk4x71jxk4cgiqhaf2fj6bjm0mgzp4qln5x84a8m"))))
4742 (build-system r-build-system)
4744 `(("r-coda" ,r-coda)))
4748 `(("pkg-config" ,pkg-config)))
4749 (home-page "http://mcmc-jags.sourceforge.net")
4750 (synopsis "Bayesian graphical models using MCMC")
4752 "This package provides an R interface to the JAGS MCMC library. JAGS is
4753 Just Another Gibbs Sampler. It is a program for analysis of Bayesian
4754 hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.")
4755 (license license:gpl2)))
4757 (define-public r-rdpack
4764 (uri (cran-uri "Rdpack" version))
4767 "0bbjnw88h54v40hzim00i8yd3p4rk9i84zfdmgcbnylscwvsf0av"))))
4768 (properties `((upstream-name . "Rdpack")))
4769 (build-system r-build-system)
4771 `(("r-bibtex" ,r-bibtex)
4772 ("r-gbrd" ,r-gbrd)))
4773 (home-page "https://github.com/GeoBosh/Rdpack")
4774 (synopsis "Update and manipulate Rd documentation objects")
4776 "This package provides functions for manipulation of R documentation
4777 objects, including functions @code{reprompt()} and @code{ereprompt()} for
4778 updating Rd documentation for functions, methods and classes; it also includes
4779 Rd macros for citations and import of references from bibtex files for use in
4780 Rd files and roxygen2 comments, as well as many functions for manipulation of
4781 references and Rd files.")
4782 (license license:gpl2+)))
4784 (define-public r-officer
4791 (uri (cran-uri "officer" version))
4794 "14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i"))))
4795 (build-system r-build-system)
4797 `(("r-base64enc" ,r-base64enc)
4798 ("r-digest" ,r-digest)
4799 ("r-htmltools" ,r-htmltools)
4800 ("r-magrittr" ,r-magrittr)
4806 (home-page "https://davidgohel.github.io/officer")
4807 (synopsis "Manipulation of Word and PowerPoint documents")
4809 "This package provides tools to access and manipulate Word and PowerPoint
4810 documents from R. The package focuses on tabular and graphical reporting from
4811 R; it also provides two functions that let users get document content into
4812 data objects. A set of functions lets add and remove images, tables and
4813 paragraphs of text in new or existing documents. When working with PowerPoint
4814 presentations, slides can be added or removed; shapes inside slides can also
4815 be added or removed. When working with Word documents, a cursor can be used
4816 to help insert or delete content at a specific location in the document.")
4817 (license license:gpl3)))
4819 (define-public r-abn
4826 (uri (cran-uri "abn" version))
4829 "00k0razgdb5y5f62622fm7rxkcxrxg470nyyb02dvpfp60254kvs"))))
4830 (build-system r-build-system)
4834 `(("r-cairo" ,r-cairo)
4839 ("r-rcpparmadillo" ,r-rcpparmadillo)
4840 ("r-rjags" ,r-rjags)))
4841 (home-page "http://www.r-bayesian-networks.org")
4842 (synopsis "Modelling multivariate data with additive bayesian networks")
4844 "Bayesian network analysis is a form of probabilistic graphical models
4845 which derives from empirical data a directed acyclic graph, DAG, describing
4846 the dependency structure between random variables. An additive Bayesian
4847 network model consists of a form of a DAG where each node comprises a
4848 @dfn{generalized linear model} (GLM). Additive Bayesian network models are
4849 equivalent to Bayesian multivariate regression using graphical modelling, they
4850 generalises the usual multivariable regression, GLM, to multiple dependent
4851 variables. This package provides routines to help determine optimal Bayesian
4852 network models for a given data set, where these models are used to identify
4853 statistical dependencies in messy, complex data.")
4854 (license license:gpl2+)))
4856 (define-public r-acd
4863 (uri (cran-uri "ACD" version))
4866 "1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"))))
4867 (properties `((upstream-name . "ACD")))
4868 (build-system r-build-system)
4869 (home-page "https://cran.r-project.org/web/packages/ACD/")
4870 (synopsis "Categorical data analysis with complete or missing responses")
4872 "This package provides tools for categorical data analysis with complete
4873 or missing responses.")
4874 (license license:gpl2+)))
4876 (define-public r-acdm
4883 (uri (cran-uri "ACDm" version))
4886 "0b4f02ga5ra66mbrm79g0bnlzmii82rks9kmxixxqgf18yhlyjil"))))
4887 (properties `((upstream-name . "ACDm")))
4888 (build-system r-build-system)
4890 `(("r-dplyr" ,r-dplyr)
4891 ("r-ggplot2" ,r-ggplot2)
4893 ("r-rsolnp" ,r-rsolnp)
4895 (home-page "https://cran.r-project.org/web/packages/ACDm/")
4896 (synopsis "Tools for Autoregressive Conditional Duration Models")
4898 "ACDm is a package for Autoregressive Conditional Duration (ACD, Engle
4899 and Russell, 1998) models. It creates trade, price or volume durations from
4900 transactions (tic) data, performs diurnal adjustments, fits various ACD models
4902 (license license:gpl2+)))
4904 (define-public r-overlap
4911 (uri (cran-uri "overlap" version))
4914 "1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy"))))
4915 (build-system r-build-system)
4916 (home-page "https://cran.r-project.org/web/packages/overlap/")
4917 (synopsis "Estimates of coefficient of overlapping for animal activity patterns")
4919 "This package provides functions to fit kernel density functions to data
4920 on temporal activity patterns of animals; estimate coefficients of overlapping
4921 of densities for two species; and calculate bootstrap estimates of confidence
4923 (license license:gpl3+)))
4925 (define-public r-snakecase
4927 (name "r-snakecase")
4932 (uri (cran-uri "snakecase" version))
4935 "1g6xai53dl24ws0mwhqrkcv583ziaq505cv3z8v5dhjgy98kilyj"))))
4936 (build-system r-build-system)
4938 `(("r-stringi" ,r-stringi)
4939 ("r-stringr" ,r-stringr)))
4940 (home-page "https://github.com/Tazinho/snakecase")
4941 (synopsis "Convert strings into any case")
4943 "This package provides a consistent, flexible and easy to use tool to
4944 parse and convert strings into cases like snake or camel among others.")
4945 (license license:gpl3)))
4947 (define-public r-prediction
4949 (name "r-prediction")
4954 (uri (cran-uri "prediction" version))
4957 "19d7312f5lkqfglfvlgssnvyw7gl161s0xradcry44r1i6qp05j1"))))
4958 (build-system r-build-system)
4960 `(("r-data-table" ,r-data-table)))
4961 (home-page "https://github.com/leeper/prediction")
4962 (synopsis "Tidy, type-safe prediction methods")
4964 "This package provides the @code{prediction()} function, a type-safe
4965 alternative to @code{predict()} that always returns a data frame. The package
4966 currently supports common model types (e.g., @code{\"lm\"}, @code{\"glm\"})
4967 from the @code{stats} package, as well as numerous other model classes from
4968 other add-on packages.")
4969 (license license:expat)))
4971 (define-public r-sjlabelled
4973 (name "r-sjlabelled")
4978 (uri (cran-uri "sjlabelled" version))
4981 "0ayfzhm9bwjfaarq5z0gvn9kapjwj3532azgin97nr5fnjdhvgaw"))))
4982 (build-system r-build-system)
4984 `(("r-broom" ,r-broom)
4985 ("r-dplyr" ,r-dplyr)
4986 ("r-haven" ,r-haven)
4987 ("r-magrittr" ,r-magrittr)
4988 ("r-prediction" ,r-prediction)
4989 ("r-purrr" ,r-purrr)
4990 ("r-rlang" ,r-rlang)
4991 ("r-snakecase" ,r-snakecase)
4992 ("r-tibble" ,r-tibble)
4993 ("r-tidyselect" ,r-tidyselect)))
4994 (home-page "https://github.com/strengejacke/sjlabelled")
4995 (synopsis "Labelled data utility functions")
4997 "This package provides a collection of functions dealing with labelled
4998 data, like reading and writing data between R and other statistical software
4999 packages. This includes easy ways to get, set or change value and variable
5000 label attributes, to convert labelled vectors into factors or numeric (and
5001 vice versa), or to deal with multiple declared missing values.")
5002 (license license:gpl3)))
5004 (define-public r-sjmisc
5011 (uri (cran-uri "sjmisc" version))
5014 "1jhrigikjpkdar3jxvi7qhqsg6lgjkjqhqll9vaay98b88rfc2im"))))
5015 (build-system r-build-system)
5017 `(("r-broom" ,r-broom)
5018 ("r-crayon" ,r-crayon)
5019 ("r-dplyr" ,r-dplyr)
5020 ("r-haven" ,r-haven)
5021 ("r-magrittr" ,r-magrittr)
5022 ("r-purrr" ,r-purrr)
5023 ("r-rlang" ,r-rlang)
5024 ("r-sjlabelled" ,r-sjlabelled)
5025 ("r-stringdist" ,r-stringdist)
5026 ("r-stringr" ,r-stringr)
5027 ("r-tidyr" ,r-tidyr)))
5028 (home-page "https://github.com/strengejacke/sjmisc")
5029 (synopsis "Data and variable transformation functions")
5031 "This package is a collection of miscellaneous utility functions,
5032 supporting data transformation tasks like recoding, dichotomizing or grouping
5033 variables, setting and replacing missing values. The data transformation
5034 functions also support labelled data, and all integrate seamlessly into a
5035 tidyverse workflow.")
5036 (license license:gpl3)))
5038 (define-public r-nortest
5045 (uri (cran-uri "nortest" version))
5048 "17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"))))
5049 (build-system r-build-system)
5050 (home-page "https://cran.r-project.org/web/packages/nortest/")
5051 (synopsis "Tests for normality")
5053 "This package provides five omnibus tests for testing the composite
5054 hypothesis of normality.")
5055 (license license:gpl2+)))
5057 (define-public r-moonbook
5064 (uri (cran-uri "moonBook" version))
5067 "0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6"))))
5068 (properties `((upstream-name . "moonBook")))
5069 (build-system r-build-system)
5071 `(("r-magrittr" ,r-magrittr)
5072 ("r-nortest" ,r-nortest)
5073 ("r-purrr" ,r-purrr)
5074 ("r-sjmisc" ,r-sjmisc)
5075 ("r-stringr" ,r-stringr)
5076 ("r-survival" ,r-survival)))
5077 (home-page "https://github.com/cardiomoon/moonBook")
5078 (synopsis "Functions and datasets for the book by Keon-Woong Moon")
5080 "This package provides several analysis-related functions for the book
5081 entitled \"R statistics and graph for medical articles\" (written in Korean),
5082 version 1, by Keon-Woong Moon with Korean demographic data with several plot
5084 (license license:gpl2)))
5086 (define-public r-flextable
5088 (name "r-flextable")
5093 (uri (cran-uri "flextable" version))
5096 "0fa42dvf0wyl91w4v0rywm3xgw9n03cfyl28ficrv8iabz4k4382"))))
5097 (build-system r-build-system)
5099 `(("r-gdtools" ,r-gdtools)
5100 ("r-htmltools" ,r-htmltools)
5101 ("r-knitr" ,r-knitr)
5102 ("r-officer" ,r-officer)
5104 ("r-rmarkdown" ,r-rmarkdown)
5105 ("r-stringr" ,r-stringr)
5106 ("r-xml2" ,r-xml2)))
5107 (home-page "https://davidgohel.github.io/flextable")
5108 (synopsis "Functions for tabular reporting")
5110 "This package provides tools to create pretty tables for HTML documents
5111 and other formats. Functions are provided to let users create tables, modify
5112 and format their content. It extends the @code{officer} package and can be
5113 used within R markdown documents when rendering to HTML and to Word
5115 (license license:gpl3)))
5117 (define-public r-writexl
5124 (uri (cran-uri "writexl" version))
5127 "0r2v12dc4zqmr1agp6vbw0fc48i278018684x84psjjqfmnv14cf"))))
5128 (build-system r-build-system)
5129 (inputs `(("zlib" ,zlib)))
5130 (home-page "https://github.com/ropensci/writexl")
5131 (synopsis "Export data frames to xlsx format")
5133 "This package provides a data frame to xlsx exporter based on
5135 (license license:bsd-2)))
5137 (define-public r-biasedurn
5139 (name "r-biasedurn")
5144 (uri (cran-uri "BiasedUrn" version))
5147 "13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"))))
5148 (properties `((upstream-name . "BiasedUrn")))
5149 (build-system r-build-system)
5150 (home-page "https://cran.r-project.org/web/packages/BiasedUrn/")
5151 (synopsis "Biased Urn model distributions")
5153 "This package provides statistical models of biased sampling in the form
5154 of univariate and multivariate noncentral hypergeometric distributions,
5155 including Wallenius' noncentral hypergeometric distribution and Fisher's
5156 noncentral hypergeometric distribution (also called extended hypergeometric
5158 (license license:gpl3)))
5160 (define-public r-goplot
5167 (uri (cran-uri "GOplot" version))
5170 "1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"))))
5171 (properties `((upstream-name . "GOplot")))
5172 (build-system r-build-system)
5174 `(("r-ggdendro" ,r-ggdendro)
5175 ("r-ggplot2" ,r-ggplot2)
5176 ("r-gridextra" ,r-gridextra)
5177 ("r-rcolorbrewer" ,r-rcolorbrewer)))
5178 (home-page "https://github.com/wencke/wencke.github.io")
5179 (synopsis "Visualization of functional analysis data")
5181 "This package provides an implementation of multilayered visualizations
5182 for enhanced graphical representation of functional analysis data. It
5183 combines and integrates omics data derived from expression and functional
5184 annotation enrichment analyses. Its plotting functions have been developed
5185 with an hierarchical structure in mind: starting from a general overview to
5186 identify the most enriched categories (modified bar plot, bubble plot) to a
5187 more detailed one displaying different types of relevant information for the
5188 molecules in a given set of categories (circle plot, chord plot, cluster plot,
5189 Venn diagram, heatmap).")
5190 (license license:gpl2)))
5192 (define-public r-getopt
5199 (uri (cran-uri "getopt" version))
5202 "13p35lbpy7i578752fa71sbfvcsqw5qfa9p6kf8b5m3c5p9i4v1x"))))
5203 (build-system r-build-system)
5204 (home-page "https://github.com/trevorld/getopt")
5205 (synopsis "Command-line option processor for R")
5207 "This package is designed to be used with Rscript to write shebang
5208 scripts that accept short and long options. Many users will prefer to
5209 use the packages @code{optparse} or @code{argparse} which add extra
5210 features like automatically generated help options and usage texts,
5211 support for default values, positional argument support, etc.")
5212 (license license:gpl2+)))
5214 (define-public r-findpython
5216 (name "r-findpython")
5221 (uri (cran-uri "findpython" version))
5224 "1y08jk2ffmkf9zpwiz2xymjhfwqvls9vzsnq62v278ghw9d571jl"))))
5225 (build-system r-build-system)
5226 (home-page "https://github.com/trevorld/findpython")
5227 (synopsis "Functions to find an acceptable Python binary")
5229 "This package was designed to find an acceptable Python binary that
5230 matches version and feature constraints.")
5231 (license license:expat)))
5233 ;; This in not the same as "r-argparser"
5234 (define-public r-argparse
5241 (uri (cran-uri "argparse" version))
5244 "0fzrbj87b274vf96azdnsjxk2nf45d5wy58vzmlah4b4h7q4j524"))))
5245 (build-system r-build-system)
5246 (inputs `(("python" ,python)))
5248 `(("r-findpython" ,r-findpython)
5249 ("r-getopt" ,r-getopt)
5250 ("r-jsonlite" ,r-jsonlite)
5251 ("r-proto" ,r-proto)))
5252 (home-page "https://github.com/trevorld/argparse")
5253 (synopsis "Command line optional and positional argument parser")
5255 "This package provides a command line parser to be used with Rscript to
5256 write shebang scripts that gracefully accept positional and optional arguments
5257 and automatically generate usage notices.")
5258 (license license:gpl2+)))
5260 (define-public r-hash
5267 (uri (cran-uri "hash" version))
5270 "0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"))))
5271 (build-system r-build-system)
5272 (home-page "https://cran.r-project.org/web/packages/hash/")
5273 (synopsis "Implementation of hash/associated arrays/dictionaries")
5275 "This package implements a data structure similar to hashes in Perl and
5276 dictionaries in Python but with a purposefully R flavor. For objects of
5277 appreciable size, access using hashes outperforms native named lists and
5279 (license license:gpl2+)))
5281 (define-public r-orddom
5288 (uri (cran-uri "orddom" version))
5291 "165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh"))))
5292 (build-system r-build-system)
5293 (propagated-inputs `(("r-psych" ,r-psych)))
5294 (home-page "https://cran.r-project.org/web/packages/orddom/")
5295 (synopsis "Ordinal dominance statistics")
5297 "This package provides tools to compute ordinal, statistics and effect
5298 sizes as an alternative to mean comparison: Cliff's delta or success rate
5299 difference (SRD), Vargha and Delaney's A or the Area Under a Receiver
5300 Operating Characteristic Curve (AUC), the discrete type of McGraw & Wong's
5301 Common Language Effect Size (CLES) or Grissom & Kim's Probability of
5302 Superiority (PS), and the Number needed to treat (NNT) effect size. Moreover,
5303 comparisons to Cohen's d are offered based on Huberty & Lowman's Percentage of
5304 Group (Non-)Overlap considerations.")
5305 (license license:gpl2)))
5307 (define-public r-doby
5314 (uri (cran-uri "doBy" version))
5317 "02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb"))))
5318 (properties `((upstream-name . "doBy")))
5319 (build-system r-build-system)
5321 `(("r-dplyr" ,r-dplyr)
5322 ("r-magrittr" ,r-magrittr)
5324 ("r-matrix" ,r-matrix)
5325 ("r-plyr" ,r-plyr)))
5326 (home-page "http://people.math.aau.dk/~sorenh/software/doBy/")
5327 (synopsis "Groupwise statistics, LSmeans, linear contrasts, and utilities")
5329 "This package contains:
5332 @item facilities for working with grouped data: @code{do}
5333 something to data stratified @code{by} some variables.
5334 @item implementations of least-squares means, general linear contrasts, and
5335 @item miscellaneous other utilities.
5337 (license license:gpl2+)))
5339 (define-public r-refgenome
5341 (name "r-refgenome")
5346 (uri (cran-uri "refGenome" version))
5349 "15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"))))
5350 (properties `((upstream-name . "refGenome")))
5351 (build-system r-build-system)
5355 ("r-rsqlite" ,r-rsqlite)))
5356 (home-page "https://cran.r-project.org/web/packages/refGenome/")
5358 "Gene and splice site annotation using annotation data from Ensembl and UCSC")
5360 "This package contains functionality for importing and managing of
5361 downloaded genome annotation data from the Ensembl genome browser (European
5362 Bioinformatics Institute) and from the UCSC genome browser (University of
5363 California, Santa Cruz) and annotation routines for genomic positions and
5364 splice site positions.")
5365 (license license:gpl2)))
5367 (define-public r-basix
5374 (uri (cran-uri "BASIX" version))
5377 "18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"))))
5378 (properties `((upstream-name . "BASIX")))
5379 (build-system r-build-system)
5380 (home-page "https://cran.r-project.org/web/packages/BASIX/")
5381 (synopsis "Efficient C/C++ toolset for R")
5383 "BASIX provides some efficient C/C++ implementations of native R
5384 procedures to speed up calculations in R.")
5385 (license license:gpl2)))
5387 (define-public r-blockfest
5389 (name "r-blockfest")
5394 (uri (cran-uri "BlockFeST" version))
5397 "0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5"))))
5398 (properties `((upstream-name . "BlockFeST")))
5399 (build-system r-build-system)
5400 (propagated-inputs `(("r-basix" ,r-basix)))
5401 (home-page "https://cran.r-project.org/web/packages/BlockFeST/")
5402 (synopsis "Bayesian calculation of region-specific fixation index")
5404 "This package provides an R implementation of an extension of the
5405 BayeScan software for codominant markers, adding the option to group
5406 individual SNPs into pre-defined blocks. A typical application of this new
5407 approach is the identification of genomic regions, genes, or gene sets
5408 containing one or more SNPs that evolved under directional selection.")
5409 (license license:gpl2)))
5411 (define-public r-proc
5418 (uri (cran-uri "pROC" version))
5421 "0ain17clympkx09ym7gydylcd93096dxzqx1qzci310yq2l7fknm"))))
5422 (properties `((upstream-name . "pROC")))
5423 (build-system r-build-system)
5425 `(("r-ggplot2" ,r-ggplot2)
5427 ("r-rcpp" ,r-rcpp)))
5428 (home-page "http://expasy.org/tools/pROC/")
5429 (synopsis "Display and analyze ROC curves")
5431 "This package provides tools for visualizing, smoothing and comparing
5432 receiver operating characteristic (ROC curves). The area under the
5433 curve (AUC) can be compared with statistical tests based on U-statistics or
5434 bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.")
5435 (license license:gpl3+)))
5437 (define-public r-rootsolve
5439 (name "r-rootsolve")
5444 (uri (cran-uri "rootSolve" version))
5447 "08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8"))))
5448 (properties `((upstream-name . "rootSolve")))
5449 (build-system r-build-system)
5450 (native-inputs `(("gfortran" ,gfortran)))
5451 (home-page "https://cran.r-project.org/web/packages/rootSolve/")
5452 (synopsis "Tools for the analysis of ordinary differential equations")
5454 "This package provides routines to find the root of nonlinear functions,
5455 and to perform steady-state and equilibrium analysis of @dfn{ordinary
5456 differential equations} (ODE). It includes routines that:
5459 @item generate gradient and jacobian matrices (full and banded),
5460 @item find roots of non-linear equations by the Newton-Raphson method,
5461 @item estimate steady-state conditions of a system of (differential) equations
5462 in full, banded or sparse form, using the Newton-Raphson method, or by
5463 dynamically running,
5464 @item solve the steady-state conditions for uni- and multicomponent 1-D, 2-D,
5465 and 3-D partial differential equations, that have been converted to ordinary
5466 differential equations by numerical differencing (using the method-of-lines
5469 (license license:gpl2+)))
5471 (define-public r-abcanalysis
5473 (name "r-abcanalysis")
5478 (uri (cran-uri "ABCanalysis" version))
5480 (base32 "0wac1ksmnxa36v99ca4hv8k0rsh3igwpcllmlv9wf7i9kgqviqwi"))))
5481 (properties `((upstream-name . "ABCanalysis")))
5482 (build-system r-build-system)
5483 (propagated-inputs `(("r-plotrix" ,r-plotrix)))
5484 (home-page "https://www.uni-marburg.de/fb12/arbeitsgruppen/datenbionik/software-en/")
5485 (synopsis "Computed ABC Analysis")
5487 "Multivariate data sets often differ in several factors or derived statistical
5488 parameters, which have to be selected for a valid interpretation. Basing this
5489 selection on traditional statistical limits leads occasionally to the perception
5490 of losing information from a data set. This package provides tools to calculate
5491 these limits on the basis of the mathematical properties of the distribution of
5492 the analyzed items.")
5493 (license license:gpl3)))
5495 (define-public r-slam
5502 (uri (cran-uri "slam" version))
5504 (base32 "0hy4qzngcgafxxr6ld7n9a9wy979ji998gpcc32vidwyab66dj5h"))))
5505 (build-system r-build-system)
5506 (home-page "https://cran.r-project.org/web/packages/slam/")
5507 (synopsis "Sparse lightweight arrays and matrices")
5509 "This package contains data structures and algorithms for sparse arrays and matrices,
5510 based on index arrays and simple triplet representations, respectively.")
5511 (license license:gpl2)))
5513 (define-public r-manipulatewidget
5515 (name "r-manipulatewidget")
5520 (uri (cran-uri "manipulateWidget" version))
5522 (base32 "1zagrbwkn2d50zzw8i2vyb1hsq4cydmfsqiy1a2qlp6zrv8a6q9x"))))
5524 `((upstream-name . "manipulateWidget")))
5525 (build-system r-build-system)
5527 `(("r-base64enc" ,r-base64enc)
5528 ("r-codetools" ,r-codetools)
5529 ("r-htmltools" ,r-htmltools)
5530 ("r-htmlwidgets" ,r-htmlwidgets)
5531 ("r-knitr" ,r-knitr)
5532 ("r-miniui" ,r-miniui)
5533 ("r-shiny" ,r-shiny)
5534 ("r-webshot" ,r-webshot)))
5535 (home-page "https://github.com/rte-antares-rpackage/manipulateWidget/")
5536 (synopsis "Add even more interactivity to interactive charts")
5538 "This package lets you create in just a few lines of R code a nice user interface to
5539 modify the data or the graphical parameters of one or multiple interactive
5540 charts. It is useful to quickly explore visually some data or for package
5541 developers to generate user interfaces easy to maintain.")
5542 (license license:gpl2+)))
5551 (uri (cran-uri "A3" version))
5553 (base32 "017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"))))
5554 (properties `((upstream-name . "A3")))
5555 (build-system r-build-system)
5557 `(("r-pbapply" ,r-pbapply)
5558 ("r-xtable" ,r-xtable)))
5559 (home-page "https://cran.r-project.org/web/packages/A3/")
5560 (synopsis "Error metrics for predictive models")
5562 "This package supplies tools for tabulating and analyzing the results of predictive
5563 models. The methods employed are applicable to virtually any predictive model
5564 and make comparisons between different methodologies straightforward.")
5565 (license license:gpl2+)))
5567 (define-public r-infotheo
5574 (uri (cran-uri "infotheo" version))
5577 "18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv"))))
5578 (build-system r-build-system)
5579 (home-page "http://homepage.meyerp.com/software")
5580 (synopsis "Information-theoretic measures")
5582 "This package implements various measures of information theory based on
5583 several entropy estimators.")
5584 (license license:gpl3+)))
5586 (define-public r-abcoptim
5593 (uri (cran-uri "ABCoptim" version))
5595 (base32 "1ih0xk88qhsmpvnxf56041wx5sk8as2f4f2gdnpnwdym9mbr9n4b"))))
5596 (properties `((upstream-name . "ABCoptim")))
5597 (build-system r-build-system)
5598 (propagated-inputs `(("r-rcpp" ,r-rcpp)))
5599 (home-page "https://github.com/gvegayon/ABCoptim/")
5600 (synopsis "Optimization of Artificial Bee Colony algorithm")
5602 "Artificial Bee Colony (ABC) is one of the most recently defined algorithms by Dervis
5603 Karaboga in 2005, motivated by the intelligent behavior of honey bees. It is as
5604 simple as Particle Swarm Optimization (PSO) and Differential Evolution (DE)
5605 algorithms, and uses only common control parameters such as colony size and
5606 maximum cycle number. The @code{r-abcoptim} implements the Artificial bee
5607 colony optimization algorithm @url{http://mf.erciyes.edu.tr/abc/pub/tr06_2005.pdf}.
5608 This version is a work-in-progress and is written in R code.")
5609 (license license:expat)))
5611 (define-public r-abcp2
5618 (uri (cran-uri "ABCp2" version))
5620 (base32 "1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx"))))
5621 (properties `((upstream-name . "ABCp2")))
5622 (build-system r-build-system)
5623 (propagated-inputs `(("r-mass" ,r-mass)))
5624 (home-page "https://cran.r-project.org/web/packages/ABCp2/")
5625 (synopsis "Approximate Bayesian Computational Model for Estimating P2")
5627 "This package tests the goodness of fit of a distribution of offspring to the Normal,
5628 Poisson, and Gamma distribution and estimates the proportional paternity of the
5629 second male (P2) based on the best fit distribution.")
5630 (license license:gpl2)))
5632 (define-public r-abcrf
5639 (uri (cran-uri "abcrf" version))
5641 (base32 "06vy3inikrr9hv36q4djhrgzi9zizdfnhz17wpra8kadmr7qj441"))))
5642 (build-system r-build-system)
5644 `(("r-mass" ,r-mass)
5645 ("r-matrixstats" ,r-matrixstats)
5646 ("r-ranger" ,r-ranger)
5648 ("r-rcpparmadillo" ,r-rcpparmadillo)
5649 ("r-readr" ,r-readr)
5650 ("r-stringr" ,r-stringr)))
5651 (home-page "https://cran.r-project.org/web/packages/abcrf/")
5652 (synopsis "Approximate bayesian computation via random forests")
5654 "This package performs approximate bayesian computation (ABC) model choice and
5655 parameter inference via random forests. This machine learning tool named random
5656 forests (RF) can conduct selection among the highly complex models covered by
5658 (license license:gpl2+)))
5660 (define-public r-abctools
5667 (uri (cran-uri "abctools" version))
5669 (base32 "07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"))))
5670 (build-system r-build-system)
5673 ("r-abind" ,r-abind)
5674 ("r-hmisc" ,r-hmisc)
5675 ("r-plyr" ,r-plyr)))
5676 (home-page "https://github.com/dennisprangle/abctools/")
5677 (synopsis "Tools for ABC analyses")
5679 "This @code{r-abctools} package provides tools for approximate Bayesian computation
5680 including summary statistic selection and assessing coverage. This includes
5681 recent dimension reduction algorithms to tune the choice of summary statistics,
5682 and coverage methods to tune the choice of threshold.")
5683 (license license:gpl2+)))
5685 (define-public r-ggstance
5692 (uri (cran-uri "ggstance" version))
5694 (base32 "0v7f3xdaaridw6d4jvnsfwxmpjrasvx5vl555wsrn50aah17fkvh"))))
5695 (build-system r-build-system)
5697 `(("r-ggplot2" ,r-ggplot2)
5699 ("r-rlang" ,r-rlang)
5700 ("r-withr" ,r-withr)))
5701 (home-page "https://cran.r-project.org/web/packages/ggstance/")
5702 (synopsis "Horizontal and vertical versions of @code{r-ggplot2}")
5704 "This package is a @code{r-ggplot2} extension that provides flipped components:
5706 @item horizontal versions of @code{r-ggplot2} stats and @code{r-ggplot2} geoms;
5707 @item vertical versions of @code{r-ggplot2} positions.
5709 (license license:gpl3)))
5711 (define-public r-mosaiccore
5713 (name "r-mosaiccore")
5718 (uri (cran-uri "mosaicCore" version))
5720 (base32 "1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z"))))
5721 (properties `((upstream-name . "mosaicCore")))
5722 (build-system r-build-system)
5724 `(("r-dplyr" ,r-dplyr)
5725 ("r-lazyeval" ,r-lazyeval)
5727 ("r-rlang" ,r-rlang)
5728 ("r-tidyr" ,r-tidyr)))
5729 (home-page "https://github.com/ProjectMOSAIC/mosaicCore/")
5730 (synopsis "Common utilities for mosaic family packages")
5732 "Common utilities used in other Mosaic family packages are collected here.")
5733 (license license:gpl2+)))
5735 (define-public r-ggformula
5737 (name "r-ggformula")
5742 (uri (cran-uri "ggformula" version))
5744 (base32 "1pmpdfjfbrc6kcpq70cr1kbj2qy711hw940g2aiis6l443z706kh"))))
5745 (build-system r-build-system)
5747 `(("r-ggplot2" ,r-ggplot2)
5748 ("r-ggstance" ,r-ggstance)
5749 ("r-magrittr" ,r-magrittr)
5750 ("r-mosaiccore" ,r-mosaiccore)
5751 ("r-rlang" ,r-rlang)
5752 ("r-stringr" ,r-stringr)
5753 ("r-tibble" ,r-tibble)
5754 ("r-tidyr" ,r-tidyr)))
5755 (home-page "https://github.com/ProjectMOSAIC/ggformula/")
5756 (synopsis "Formula interface for the @code{r-ggplot2}")
5758 "The @code{r-ggformula} introduces a family of graphics functions, gf_point(),
5759 gf_density(), and so on, bring the formula interface to ggplot(). This captures
5760 and extends the excellent simplicity of the lattice-graphics formula interface,
5761 while providing the intuitive capabilities of @code{r-ggplot2}.")
5762 (license license:expat)))
5764 (define-public r-mosaicdata
5766 (name "r-mosaicdata")
5771 (uri (cran-uri "mosaicData" version))
5773 (base32 "04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9"))))
5774 (properties `((upstream-name . "mosaicData")))
5775 (build-system r-build-system)
5776 (home-page "https://cran.r-project.org/web/packages/mosaicData/")
5777 (synopsis "Data sets for project Mosaic")
5779 "This package provides data sets from project Mosaic @url{http://mosaic-web.org}
5780 used to teach mathematics, statistics, computation and modeling.")
5781 (license license:gpl2+)))
5783 (define-public r-mosaic
5790 (uri (cran-uri "mosaic" version))
5792 (base32 "10jbrg8kli00kfgbh2f67bymm5cnlancc9dplb1j7fl552yjddn2"))))
5793 (build-system r-build-system)
5795 `(("r-broom" ,r-broom)
5796 ("r-dplyr" ,r-dplyr)
5797 ("r-ggdendro" ,r-ggdendro)
5798 ("r-ggformula" ,r-ggformula)
5799 ("r-ggplot2" ,r-ggplot2)
5800 ("r-ggrepel" ,r-ggrepel)
5802 ("r-gridextra" ,r-gridextra)
5803 ("r-lattice" ,r-lattice)
5804 ("r-latticeextra" ,r-latticeextra)
5805 ("r-lazyeval" ,r-lazyeval)
5807 ("r-matrix" ,r-matrix)
5808 ("r-mosaiccore" ,r-mosaiccore)
5809 ("r-mosaicdata" ,r-mosaicdata)
5810 ("r-readr" ,r-readr)
5811 ("r-tidyr" ,r-tidyr)))
5812 (home-page "https://github.com/ProjectMOSAIC/mosaic/")
5813 (synopsis "Mathematics, statistics, and computation teaching utilities")
5815 "This package contain data sets and utilities from
5816 @url{http://mosaic-web.org, Project MOSAIC} used to teach mathematics,
5817 statistics, computation and modeling. Project MOSAIC is a community of
5818 educators working to tie together aspects of quantitative work that students
5819 in science, technology, engineering and mathematics will need in their
5820 professional lives, but which are usually taught in isolation, if at all.")
5821 (license license:gpl2+)))
5823 (define-public r-abd
5830 (uri (cran-uri "abd" version))
5832 (base32 "191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"))))
5833 (build-system r-build-system)
5835 `(("r-lattice" ,r-lattice)
5836 ("r-mosaic" ,r-mosaic)
5837 ("r-nlme" ,r-nlme)))
5838 (home-page "https://cran.r-project.org/web/packages/abd/")
5839 (synopsis "Analysis of biological data")
5841 "The @code{r-abd} package contains data sets and sample code for the Analysis of
5842 biological data by Michael Whitlock and Dolph Schluter.")
5843 (license license:gpl2)))
5845 (define-public r-svgui
5852 (uri (cran-uri "svGUI" version))
5854 (base32 "1r7ab0p4yr8q03gj02hmj7k1ghksgkg4nx750c0ajfs2q9y1dxfc"))))
5855 (properties `((upstream-name . "svGUI")))
5856 (build-system r-build-system)
5857 (home-page "https://github.com/SciViews/svGUI/")
5858 (synopsis "Functions for managing GUI clients in R")
5860 "The SciViews @code{svGUI} package eases the management of Graphical User
5861 Interfaces (GUI) in R. It is independent from any particular GUI widgets. It
5862 centralizes info about GUI elements currently used, and it dispatches GUI
5863 calls to the particular toolkits in use in function of the context.")
5864 (license license:gpl2)))
5866 (define-public r-svdialogs
5868 (name "r-svdialogs")
5873 (uri (cran-uri "svDialogs" version))
5875 (base32 "0xqppydfawnwk84kb5qiybwbcmv38vn4imgz01mz2pnq4xb80p97"))))
5876 (properties `((upstream-name . "svDialogs")))
5877 (build-system r-build-system)
5880 ("zenity" ,zenity)))
5882 `(("r-rstudioapi" ,r-rstudioapi)
5883 ("r-svgui" ,r-svgui)))
5884 (home-page "https://github.com/SciViews/svDialogs/")
5885 (synopsis "Portable dialog boxes")
5887 "This package helps to construct standard dialog boxes for your GUI, including
5888 message boxes, input boxes, list, file or directory selection, and others. In
5889 case R cannot display GUI dialog boxes, a simpler command line version of these
5890 interactive elements is also provided as a fallback solution.")
5891 (license license:gpl2)))
5893 (define-public r-abe
5900 (uri (cran-uri "abe" version))
5903 "1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"))))
5904 (build-system r-build-system)
5905 (home-page "https://cran.r-project.org/web/packages/abe/")
5906 (synopsis "Augmented backward elimination")
5908 "This package performs augmented backward elimination and checks the
5909 stability of the obtained model. Augmented backward elimination combines
5910 significance or information based criteria with the change in estimate to
5911 either select the optimal model for prediction purposes or to serve as a tool
5912 to obtain a practically sound, highly interpretable model.")
5913 (license license:gpl2+)))
5915 (define-public r-abf2
5922 (uri (cran-uri "abf2" version))
5924 (base32 "0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"))))
5925 (build-system r-build-system)
5926 (home-page "https://cran.r-project.org/web/packages/abf2/")
5927 (synopsis "Load gap-free axon @code{r-abf2} files")
5929 "This package loads electrophysiology data from ABF2 files, as created by
5930 Axon Instruments/Molecular Devices software. Only files recorded in gap-free
5931 mode are currently supported.")
5932 (license license:artistic2.0)))
5934 (define-public r-abhgenotyper
5936 (name "r-abhgenotyper")
5941 (uri (cran-uri "ABHgenotypeR" version))
5943 (base32 "08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"))))
5944 (properties `((upstream-name . "ABHgenotypeR")))
5945 (build-system r-build-system)
5947 `(("r-ggplot2" ,r-ggplot2)
5948 ("r-reshape2" ,r-reshape2)))
5949 (home-page "https://github.com/StefanReuscher/ABHgenotypeR/")
5950 (synopsis "Visualize and manipulate ABH genotypes")
5952 "The @code{r-abhgenotyper} package provides simple imputation,
5953 error-correction and plotting capacities for genotype data. The package is
5954 supposed to serve as an intermediate but independent analysis tool between the
5955 TASSEL GBS pipeline and the @code{r-qtl} package. It provides functionalities
5956 not found in either TASSEL or @code{r-qtl} in addition to visualization of
5957 genotypes as \"graphical genotypes\".")
5958 (license license:gpl3)))
5960 (define-public r-abjutils
5967 (uri (cran-uri "abjutils" version))
5969 (base32 "0qrsc4if7aif73qp95lw6b5986c2r0jn7m39123zij8k15vc935b"))))
5970 (build-system r-build-system)
5972 `(("r-devtools" ,r-devtools)
5973 ("r-dplyr" ,r-dplyr)
5976 ("r-magrittr" ,r-magrittr)
5978 ("r-progress" ,r-progress)
5979 ("r-purrr" ,r-purrr)
5980 ("r-rstudioapi" ,r-rstudioapi)
5981 ("r-scales" ,r-scales)
5982 ("r-stringi" ,r-stringi)
5983 ("r-stringr" ,r-stringr)
5984 ("r-tibble" ,r-tibble)
5985 ("r-tidyr" ,r-tidyr)))
5986 (home-page "https://github.com/abjur/abjutils/")
5987 (synopsis "Collection of tools for jurimetrical analysis")
5989 "This package implements general purpose tools, such as functions for
5990 sampling and basic manipulation of Brazilian lawsuits identification number.
5991 It also implements functions for text cleaning, such as accentuation
5993 (license license:expat)))
5995 (define-public r-abnormality
5997 (name "r-abnormality")
6002 (uri (cran-uri "abnormality" version))
6004 (base32 "1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"))))
6005 (build-system r-build-system)
6007 `(("r-mass" ,r-mass)
6008 ("r-matrix" ,r-matrix)))
6009 (home-page "https://cran.r-project.org/web/packages/abnormality/")
6010 (synopsis "Measure a subject's abnormality with respect to a reference population")
6012 "This package contains functions to implement the methodology and
6013 considerations laid out by Marks et al. in the article \"Measuring abnormality
6014 in high dimensional spaces: applications in biomechanical gait analysis\".
6015 Using high-dimensional datasets to measure a subject's overall level of
6016 abnormality as compared to a reference population is often needed in outcomes
6018 (license license:expat)))
6020 (define-public r-abodoutlier
6022 (name "r-abodoutlier")
6027 (uri (cran-uri "abodOutlier" version))
6029 (base32 "1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"))))
6030 (properties `((upstream-name . "abodOutlier")))
6031 (build-system r-build-system)
6033 `(("r-cluster" ,r-cluster)))
6034 (home-page "https://cran.r-project.org/web/packages/abodOutlier/")
6035 (synopsis "Angle-based outlier detection")
6037 "This package performs angle-based outlier detection on a given data
6038 frame. It offers three methods to process data:
6040 @item full but slow implementation using all the data that has cubic
6042 @item a fully randomized method;
6043 @item a method using k-nearest neighbours.
6045 These algorithms are well suited for high dimensional data outlier
6047 (license license:expat)))
6049 (define-public r-abps
6056 (uri (cran-uri "ABPS" version))
6058 (base32 "0n3f66nmfi5v94il1mxy026mi84w01ph2aljk60vn3mrz8kwf2ll"))))
6059 (properties `((upstream-name . "ABPS")))
6060 (build-system r-build-system)
6061 (propagated-inputs `(("r-kernlab" ,r-kernlab)))
6062 (home-page "https://cran.r-project.org/web/packages/ABPS/")
6063 (synopsis "Abnormal blood profile score to detect blood doping")
6065 "This package offers an implementation of the @dfn{Abnormal blood profile score} (ABPS).
6066 The ABPS is a part of the Athlete biological passport program of the World
6067 anti-doping agency, which combines several blood parameters into a single
6068 score in order to detect blood doping. The package also contains functions to
6069 calculate other scores used in anti-doping programs, such as the ratio of
6070 hemoglobin to reticulocytes (OFF-score), as well as example data.")
6071 (license license:gpl2+)))
6073 (define-public r-parmigene
6075 (name "r-parmigene")
6080 (uri (cran-uri "parmigene" version))
6083 "1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"))))
6084 (build-system r-build-system)
6085 (home-page "https://cran.r-project.org/web/packages/parmigene/")
6086 (synopsis "Mutual information estimation for gene network reconstruction")
6088 "This package provides a parallel estimation of the mutual information
6089 based on entropy estimates from k-nearest neighbors distances and algorithms
6090 for the reconstruction of gene regulatory networks.")
6091 (license license:agpl3+)))
6093 (define-public r-pscl
6100 (uri (cran-uri "pscl" version))
6102 (base32 "1phf3awsfr4ncqfqzin5m1pz0g7y1zhbcm2sz7358ssw914fd7rc"))))
6103 (build-system r-build-system)
6105 `(("r-mass" ,r-mass)))
6106 (home-page "https://github.com/atahk/pscl/")
6107 (synopsis "Political science computational laboratory")
6109 "The @code{pscl} is an R package providing classes and methods for:
6111 @item Bayesian analysis of roll call data (item-response models);
6112 @item elementary Bayesian statistics;
6113 @item maximum likelihood estimation of zero-inflated and hurdle models for count
6115 @item utility functions.
6117 (license license:gpl2)))
6119 (define-public r-accelmissing
6121 (name "r-accelmissing")
6126 (uri (cran-uri "accelmissing" version))
6128 (base32 "1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"))))
6129 (build-system r-build-system)
6131 `(("r-mice" ,r-mice)
6132 ("r-pscl" ,r-pscl)))
6133 (home-page "https://cran.r-project.org/web/packages/accelmissing/")
6134 (synopsis "Missing value imputation for accelerometer data")
6136 "This package provides a statistical method to impute the missing values in
6137 accelerometer data. The methodology includes both parametric and
6138 semi-parametric multiple imputations under the zero-inflated Poisson lognormal
6139 model. It also provides multiple functions to preprocess the accelerometer data
6140 previous to the missing data imputation. These include detecting the wearing
6141 and the non-wearing time, selecting valid days and subjects, and creating plots.")
6142 (license license:gpl2+)))
6144 (define-public r-mhsmm
6151 (uri (cran-uri "mhsmm" version))
6153 (base32 "009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"))))
6154 (build-system r-build-system)
6155 (propagated-inputs `(("r-mvtnorm" ,r-mvtnorm)))
6156 (home-page "https://github.com/jaredo/mhsmm/")
6157 (synopsis "Inference for hidden Markov and semi-Markov models")
6159 "The @code{r-mhsmm} package implements estimation and prediction methods for
6160 hidden Markov and semi-Markov models for multiple observation sequences. Such
6161 techniques are of interest when observed data is thought to be dependent on some
6162 unobserved (or hidden) state. Also, this package is suitable for equidistant
6163 time series data, with multivariate and/or missing data. Allows user defined
6164 emission distributions.")
6165 (license license:gpl2+)))
6167 (define-public r-nleqslv
6174 (uri (cran-uri "nleqslv" version))
6176 (base32 "1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"))))
6177 (build-system r-build-system)
6178 (native-inputs `(("gfortran" ,gfortran)))
6179 (home-page "https://cran.r-project.org/web/packages/nleqslv/")
6180 (synopsis "Solve systems of nonlinear equations")
6182 "The @code{r-nleqslv} package solves a system of nonlinear equations using a
6183 Broyden or a Newton method with a choice of global strategies such as line
6184 search and trust region. There are options for using a numerical or user
6185 supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a
6186 singular or ill-conditioned Jacobian.")
6187 (license license:gpl2+)))
6189 (define-public r-physicalactivity
6191 (name "r-physicalactivity")
6196 (uri (cran-uri "PhysicalActivity" version))
6198 (base32 "14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln"))))
6200 `((upstream-name . "PhysicalActivity")))
6201 (build-system r-build-system)
6202 (home-page "https://cran.r-project.org/web/packages/PhysicalActivity/")
6203 (synopsis "Procesing accelerometer data for physical activity measurement")
6205 "This @code{r-physicalactivity} package provides a function @code{wearingMarking}
6206 for classification of monitor wear and nonwear time intervals in accelerometer
6207 data collected to assess physical activity. The package also contains functions
6208 for making plots of accelerometer data and obtaining the summary of various
6209 information including daily monitor wear time and the mean monitor wear time
6210 during valid days. The revised package version 0.2-1 improved the functions
6211 regarding speed, robustness and add better support for time zones and daylight
6212 saving. In addition, several functions were added:
6214 @item the @code{markDelivery} can classify days for ActiGraph delivery by mail;
6215 @item the @code{markPAI} can categorize physical activity intensity level based
6216 on user-defined cut-points of accelerometer counts.
6218 It also supports importing ActiGraph (AGD) files with @code{readActigraph} and
6219 @code{queryActigraph} functions.")
6220 (license license:gpl3+)))
6222 (define-public r-acc
6229 (uri (cran-uri "acc" version))
6231 (base32 "1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"))))
6232 (build-system r-build-system)
6234 `(("r-circlize" ,r-circlize)
6236 ("r-ggplot2" ,r-ggplot2)
6237 ("r-iterators" ,r-iterators)
6238 ("r-mhsmm" ,r-mhsmm)
6239 ("r-nleqslv" ,r-nleqslv)
6240 ("r-physicalactivity" ,r-physicalactivity)
6242 ("r-r-utils" ,r-r-utils)
6244 ("r-rcpparmadillo" ,r-rcpparmadillo)
6245 ("r-rsqlite" ,r-rsqlite)
6247 (home-page "https://cran.r-project.org/web/packages/acc/")
6248 (synopsis "Exploring accelerometer data")
6250 "This package processes accelerometer data from uni-axial and tri-axial devices
6251 and generates data summaries. Also, includes functions to plot, analyze, and
6252 simulate accelerometer data.")
6253 (license license:gpl2+)))
6255 (define-public r-rbenchmark
6257 (name "r-rbenchmark")
6262 (uri (cran-uri "rbenchmark" version))
6264 (base32 "010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"))))
6265 (build-system r-build-system)
6266 (home-page "https://cran.r-project.org/web/packages/rbenchmark/")
6267 (synopsis "Benchmarking routine for R")
6269 "This @code{r-rbenchmark} package is inspired by the Perl module Benchmark,
6270 and is intended to facilitate benchmarking of arbitrary R code. The library
6271 consists of just one function, benchmark, which is a simple wrapper around
6272 system.time. Given a specification of the benchmarking process (counts of
6273 replications, evaluation environment) and an arbitrary number of expressions,
6274 benchmark evaluates each of the expressions in the specified environment,
6275 replicating the evaluation as many times as specified, and returning the results
6276 conveniently wrapped into a data frame.")
6277 (license license:gpl2+)))
6279 (define-public r-dvmisc
6286 (uri (cran-uri "dvmisc" version))
6288 (base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"))))
6289 (build-system r-build-system)
6291 `(("r-mass" ,r-mass)
6292 ("r-rbenchmark" ,r-rbenchmark)
6293 ("r-rcpp" ,r-rcpp)))
6294 (home-page "https://cran.r-project.org/web/packages/dvmisc/")
6295 (synopsis "Faster computation of common statistics and miscellaneous functions")
6297 "This package implements faster versions of base R functions (e.g. mean, standard
6298 deviation, covariance, weighted mean), mostly written in C++, along with
6299 miscellaneous functions for various purposes (e.g. create the histogram with
6300 fitted probability density function or probability mass function curve, create
6301 the body mass index groups, assess the linearity assumption in logistic
6303 (license license:gpl2)))
6305 (define-public r-accelerometry
6307 (name "r-accelerometry")
6312 (uri (cran-uri "accelerometry" version))
6314 (base32 "13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"))))
6315 (build-system r-build-system)
6317 `(("r-dvmisc" ,r-dvmisc)
6318 ("r-rcpp" ,r-rcpp)))
6319 (home-page "https://cran.r-project.org/web/packages/accelerometry/")
6320 (synopsis "Functions for processing accelerometer data")
6322 "This package provides a collection of functions that perform operations on
6323 time-series accelerometer data, such as identify the non-wear time, flag minutes
6324 that are part of an activity bout, and find the maximum 10-minute average count
6325 value. The functions are generally very flexible, allowing for a variety of
6326 algorithms to be implemented.")
6327 (license license:gpl3)))
6329 (define-public r-absim
6336 (uri (cran-uri "AbSim" version))
6338 (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"))))
6339 (properties `((upstream-name . "AbSim")))
6340 (build-system r-build-system)
6343 ("r-powerlaw" ,r-powerlaw)))
6344 (home-page "https://cran.r-project.org/web/packages/AbSim/")
6345 (synopsis "Time resolved simulations of antibody repertoires")
6347 "This package provides simulation methods for the evolution of antibody repertoires.
6348 The heavy and light chain variable region of both human and C57BL/6 mice can
6349 be simulated in a time-dependent fashion. Both single lineages using one set of
6350 V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins
6351 with an initial V-D-J recombination event, starting the first phylogenetic tree.
6352 Upon completion, the main loop of the algorithm begins, with each iteration
6353 representing one simulated time step. Various mutation events are possible at
6354 each time step, contributing to a diverse final repertoire.")
6355 (license license:gpl2)))
6357 (define-public r-quic
6364 (uri (cran-uri "QUIC" version))
6366 (base32 "021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"))))
6367 (properties `((upstream-name . "QUIC")))
6368 (build-system r-build-system)
6369 (home-page "https://www.cs.utexas.edu/users/sustik/QUIC/")
6370 (synopsis "Regularized sparse inverse covariance matrix estimation")
6372 "This package implements the regularized Gaussian maximum likelihood
6373 estimation of the inverse of a covariance matrix. It uses Newton's method and
6374 coordinate descent to solve the regularized inverse covariance matrix
6375 estimation problem.")
6376 ;; The project home page states that the release is under GPLv3 or later.
6377 ;; The CRAN page only says GPL-3.
6378 (license license:gpl3+)))
6380 (define-public r-abundant
6387 (uri (cran-uri "abundant" version))
6389 (base32 "1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"))))
6390 (build-system r-build-system)
6392 `(("r-quic" ,r-quic)))
6393 (home-page "https://cran.r-project.org/web/packages/abundant/")
6394 (synopsis "Abundant regression and high-dimensional principal fitted components")
6396 "This package provides tools to fit and predict with the high-dimensional
6397 principal fitted components model. This model is described by Cook, Forzani,
6398 and Rothman (2012) @url{doi:10.1214/11-AOS962}.")
6399 ;; The DESCRIPTION file states GPL-2, but since it directly depends on a
6400 ;; GPLv3+ package (QUIC) this likely means GPLv2+.
6401 (license license:gpl2+)))
6403 (define-public r-ac3net
6410 (uri (cran-uri "Ac3net" version))
6412 (base32 "1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"))))
6413 (properties `((upstream-name . "Ac3net")))
6414 (build-system r-build-system)
6416 `(("r-data-table" ,r-data-table)))
6417 (home-page "https://cran.r-project.org/web/packages/Ac3net/")
6418 (synopsis "Inferring directional conservative causal core gene networks")
6419 (description "This package infers directional Conservative causal core
6420 (gene) networks (C3NET). This is a version of the algorithm C3NET with
6421 directional network.")
6422 (license license:gpl3+)))
6424 (define-public r-aca
6431 (uri (cran-uri "ACA" version))
6433 (base32 "1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"))))
6434 (properties `((upstream-name . "ACA")))
6435 (build-system r-build-system)
6436 (home-page "https://cran.r-project.org/web/packages/ACA/")
6437 (synopsis "Abrupt change-point or aberration detection in point series")
6439 "This package offers an interactive function for the detection of breakpoints in
6441 ;; Any version of the GPL
6442 (license (list license:gpl2+ license:gpl3+))))
6444 (define-public r-acceptancesampling
6446 (name "r-acceptancesampling")
6451 (uri (cran-uri "AcceptanceSampling" version))
6453 (base32 "18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"))))
6455 `((upstream-name . "AcceptanceSampling")))
6456 (build-system r-build-system)
6457 (home-page "https://cran.r-project.org/web/packages/AcceptanceSampling/")
6458 (synopsis "Creation and evaluation of acceptance sampling plans")
6460 "This @code{r-acceptancesampling} provides functionality for creating and evaluating
6461 acceptance sampling plans. Acceptance sampling is a methodology commonly used
6462 in quality control and improvement. International standards of acceptance
6463 sampling provide sampling plans for specific circumstances. The aim of this
6464 package is to provide an easy-to-use interface to visualize single, double or
6465 multiple sampling plans. In addition, methods have been provided to enable the
6466 user to assess sampling plans against pre-specified levels of performance, as
6467 measured by the probability of acceptance for a given level of quality in the
6469 (license license:gpl3+)))
6471 (define-public r-acclma
6478 (uri (cran-uri "ACCLMA" version))
6480 (base32 "1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"))))
6481 (properties `((upstream-name . "ACCLMA")))
6482 (build-system r-build-system)
6483 (home-page "https://cran.r-project.org/web/packages/ACCLMA/")
6484 (synopsis "ACC & LMA graph plotting")
6486 "This package contains a function that imports data from a @acronym{CSV,
6487 Comma-Separated Values} file, or uses manually entered data from the format (x,
6488 y, weight) and plots the appropriate @acronym{ACC, Absolute Concentration
6489 Curve} vs @acronym{LOI, Line of Independence} graph and
6490 @acronym{LMA, @acronym{LOI} Minus @acronym{ACC}} graph. The main
6491 function is @code{plotLMA} (source file, header) that takes a data set and plots the
6492 appropriate @acronym{LMA} and @acronym{ACC} graphs. If no source file (a
6493 string) was passed, a manual data entry window is opened. The header parameter
6494 indicates by TRUE/FALSE (false by default) if the source @acronym{CSV} file has
6495 a header row or not. The dataset should contain only one independent variable
6496 (x) and one dependent variable (y) and can contain a weight for each
6498 (license license:gpl2)))
6500 (define-public r-aspi
6507 (uri (cran-uri "aspi" version))
6509 (base32 "0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"))))
6510 (build-system r-build-system)
6512 "https://cran.r-project.org/web/packages/aspi/")
6514 "Analysis of symmetry of parasitic infections")
6516 "This package provides tools for the analysis and visualization of bilateral
6517 asymmetry in parasitic infections.")
6518 (license license:gpl3+)))
6520 (define-public r-sandwich
6527 (uri (cran-uri "sandwich" version))
6530 "168kq5kk34xbhfsxsanard9zriyp6cw0s09ralzb57kk42pl9hbc"))))
6531 (build-system r-build-system)
6533 `(("r-zoo" ,r-zoo)))
6534 (home-page "https://cran.r-project.org/web/packages/sandwich/")
6535 (synopsis "Robust Covariance Matrix Estimators")
6537 "This package provides model-robust standard error estimators for
6538 cross-sectional, time series, clustered, panel, and longitudinal data.")
6539 ;; Either version of the license.
6540 (license (list license:gpl2 license:gpl3))))
6542 (define-public r-th-data
6549 (uri (cran-uri "TH.data" version))
6552 "03xfvww0krw0fn76qmmvrj7dx4shin57qafwhkrggfg25hbqlcfq"))))
6553 (properties `((upstream-name . "TH.data")))
6554 (build-system r-build-system)
6556 `(("r-mass" ,r-mass)
6557 ("r-survival" ,r-survival)))
6558 (home-page "https://cran.r-project.org/web/packages/TH.data/")
6559 (synopsis "Shared data sets")
6561 "This package contains supporting data sets that are used in other
6562 packages maintained by Torsten Hothorn.")
6563 (license license:gpl3)))
6565 (define-public r-multcomp
6572 (uri (cran-uri "multcomp" version))
6575 "0fm78g4zjc6ank316qfw977864shmy890znn4fahwc8jjdhpc252"))))
6576 (build-system r-build-system)
6578 `(("r-codetools" ,r-codetools)
6579 ("r-mvtnorm" ,r-mvtnorm)
6580 ("r-sandwich" ,r-sandwich)
6581 ("r-survival" ,r-survival)
6582 ("r-th-data" ,r-th-data)))
6583 (home-page "https://cran.r-project.org/web/packages/multcomp/")
6584 (synopsis "Simultaneous inference in general parametric models")
6586 "Simultaneous tests and confidence intervals for general linear
6587 hypotheses in parametric models, including linear, generalized linear, linear
6588 mixed effects, and survival models. The package includes demos reproducing
6589 analyzes presented in the book \"Multiple Comparisons Using R\" (Bretz,
6590 Hothorn, Westfall, 2010, CRC Press).")
6591 (license license:gpl2)))
6593 (define-public r-emmeans
6600 (uri (cran-uri "emmeans" version))
6603 "0kdyy4qp332c4yyvp1cnh48h6ks6ffir5rjcv0py0vm3m8c3hh61"))))
6604 (build-system r-build-system)
6606 `(("r-estimability" ,r-estimability)
6607 ("r-mvtnorm" ,r-mvtnorm)
6609 ("r-xtable" ,r-xtable)))
6610 (home-page "https://github.com/rvlenth/emmeans")
6611 (synopsis "Estimated marginal means, aka least-squares means")
6613 "This package provides tools to obtain @dfn{estimated marginal
6614 means} (EMMs) for many linear, generalized linear, and mixed models. It can
6615 be used to compute contrasts or linear functions of EMMs, trends, and
6616 comparisons of slopes.")
6617 ;; Either version of the license.
6618 (license (list license:gpl2 license:gpl3))))
6620 (define-public r-pwr
6627 (uri (cran-uri "pwr" version))
6630 "0r5g781lr677vp3zyhgmi7r68c87l8gd05l1s3ffnxgn5wf043sm"))))
6631 (build-system r-build-system)
6633 `(("r-knitr" ,r-knitr)))
6634 (home-page "https://github.com/heliosdrm/pwr")
6635 (synopsis "Basic functions for power analysis")
6637 "This package provides power analysis functions along the lines of
6639 (license license:gpl3+)))
6641 (define-public r-coin
6648 (uri (cran-uri "coin" version))
6651 "1fq58793bymzig1syjg2lvn6hsxfwkhh00jfrchh3c0y7rfhc66m"))))
6652 (build-system r-build-system)
6654 `(("r-modeltools" ,r-modeltools)
6655 ("r-multcomp" ,r-multcomp)
6656 ("r-mvtnorm" ,r-mvtnorm)
6657 ("r-survival" ,r-survival)))
6658 (home-page "http://coin.r-forge.r-project.org")
6659 (synopsis "Conditional inference procedures in a permutation test framework")
6661 "This package provides conditional inference procedures for the general
6662 independence problem including two-sample, K-sample (non-parametric ANOVA),
6663 correlation, censored, ordered and multivariate problems.")
6664 (license license:gpl2)))
6666 (define-public r-bayesplot
6668 (name "r-bayesplot")
6673 (uri (cran-uri "bayesplot" version))
6676 "0in9cq2ybpa7njrwqx4l6nc8i01cjswsvzwlyiw465pi74aapr57"))))
6677 (build-system r-build-system)
6679 `(("pandoc" ,ghc-pandoc)
6680 ("pandoc-citeproc" ,ghc-pandoc-citeproc)))
6682 `(("r-dplyr" ,r-dplyr)
6683 ("r-ggplot2" ,r-ggplot2)
6684 ("r-ggridges" ,r-ggridges)
6685 ("r-reshape2" ,r-reshape2)
6686 ("r-rlang" ,r-rlang)))
6687 (home-page "http://mc-stan.org/bayesplot")
6688 (synopsis "Plotting for Bayesian models")
6690 "This package provides plotting functions for posterior analysis, model
6691 checking, and MCMC diagnostics. The package is designed not only to provide
6692 convenient functionality for users, but also a common set of functions that
6693 can be easily used by developers working on a variety of R packages for
6694 Bayesian modeling.")
6695 (license license:gpl3+)))
6697 (define-public r-tmb
6704 (uri (cran-uri "TMB" version))
6707 "1r2d8c5iazihba42sn33yarv0dcfiy989sx64zcf14zr8k6cgjzs"))))
6708 (properties `((upstream-name . "TMB")))
6709 (build-system r-build-system)
6711 `(("r-matrix" ,r-matrix)
6712 ("r-rcppeigen" ,r-rcppeigen)))
6713 (home-page "http://tmb-project.org")
6714 (synopsis "Template model builder: a general random effect tool")
6716 "With this tool, a user should be able to quickly implement complex
6717 random effect models through simple C++ templates. The package combines
6718 @code{CppAD} (C++ automatic differentiation), @code{Eigen} (templated
6719 matrix-vector library) and @code{CHOLMOD} (sparse matrix routines available
6720 from R) to obtain an efficient implementation of the applied Laplace
6721 approximation with exact derivatives. Key features are: Automatic sparseness
6722 detection, parallelism through BLAS and parallel user templates.")
6723 (license license:gpl2)))
6725 (define-public r-sjstats
6732 (uri (cran-uri "sjstats" version))
6735 "0c7g35vn7r9rylhp0gj1yfslg7jybwrhpqpp7vdcd90xfccih24r"))))
6736 (build-system r-build-system)
6738 `(("r-bayesplot" ,r-bayesplot)
6739 ("r-broom" ,r-broom)
6741 ("r-crayon" ,r-crayon)
6742 ("r-dplyr" ,r-dplyr)
6743 ("r-emmeans" ,r-emmeans)
6744 ("r-glmmtmb" ,r-glmmtmb)
6746 ("r-magrittr" ,r-magrittr)
6748 ("r-matrix" ,r-matrix)
6749 ("r-modelr" ,r-modelr)
6751 ("r-purrr" ,r-purrr)
6753 ("r-rlang" ,r-rlang)
6754 ("r-sjlabelled" ,r-sjlabelled)
6755 ("r-sjmisc" ,r-sjmisc)
6756 ("r-tidyr" ,r-tidyr)))
6757 (home-page "https://github.com/strengejacke/sjstats")
6758 (synopsis "Functions for common statistical computations")
6760 "This package provides a collection of convenient functions for common
6761 statistical computations, which are not directly provided by R's @code{base}
6762 or @code{stats} packages. This package aims at providing, first, shortcuts
6763 for statistical measures, which otherwise could only be calculated with
6764 additional effort. Second, these shortcut functions are generic, and can be
6765 applied not only to vectors, but also to other objects as well. The focus of
6766 most functions lies on summary statistics or fit measures for regression
6767 models, including generalized linear models, mixed effects models and Bayesian
6769 (license license:gpl3)))
6771 (define-public r-glmmtmb
6778 (uri (cran-uri "glmmTMB" version))
6781 "1clpkjlmsjmn3m1z5jqv8cgw6bvpqsy4nx6k947r0jya017ny5y5"))))
6782 (properties `((upstream-name . "glmmTMB")))
6783 (build-system r-build-system)
6785 `(("r-lme4" ,r-lme4)
6786 ("r-matrix" ,r-matrix)
6788 ("r-rcppeigen" ,r-rcppeigen)
6791 `(("r-knitr" ,r-knitr)))
6792 (home-page "https://github.com/glmmTMB")
6793 (synopsis "Generalized linear mixed models")
6795 "Fit linear and generalized linear mixed models with various extensions,
6796 including zero-inflation. The models are fitted using maximum likelihood
6797 estimation via the Template Model Builder. Random effects are assumed to be
6798 Gaussian on the scale of the linear predictor and are integrated out using the
6799 Laplace approximation. Gradients are calculated using automatic
6801 (license license:agpl3+)))
6803 (define-public r-ggeffects
6805 (name "r-ggeffects")
6810 (uri (cran-uri "ggeffects" version))
6813 "070c3fxmzajq2fy816s5pfqdyjlnzkabj97z7fcsva4h5rnqi9d6"))))
6814 (build-system r-build-system)
6816 `(("r-crayon" ,r-crayon)
6817 ("r-dplyr" ,r-dplyr)
6818 ("r-ggplot2" ,r-ggplot2)
6820 ("r-magrittr" ,r-magrittr)
6822 ("r-prediction" ,r-prediction)
6823 ("r-purrr" ,r-purrr)
6824 ("r-rlang" ,r-rlang)
6825 ("r-scales" ,r-scales)
6826 ("r-sjlabelled" ,r-sjlabelled)
6827 ("r-sjmisc" ,r-sjmisc)
6828 ("r-sjstats" ,r-sjstats)
6829 ("r-tidyr" ,r-tidyr)))
6830 (home-page "https://github.com/strengejacke/ggeffects")
6831 (synopsis "Create tidy data frames of marginal effects for ggplot")
6833 "This package provides tools to compute marginal effects from statistical
6834 models and return the result as tidy data frames. These data frames are ready
6835 to use with the @code{ggplot2} package. Marginal effects can be calculated
6836 for many different models. Interaction terms, splines and polynomial terms
6837 are also supported. The two main functions are @code{ggpredict()} and
6838 @code{ggeffect()}. There is a generic @code{plot()} method to plot the
6839 results using @code{ggplot2}.")
6840 (license license:gpl3)))
6842 (define-public r-sjplot
6849 (uri (cran-uri "sjPlot" version))
6852 "13qvw2s3r96qfi8kfsn76m050ccnmckl31a9qv94xws8da99v2fk"))))
6853 (properties `((upstream-name . "sjPlot")))
6854 (build-system r-build-system)
6856 `(("r-broom" ,r-broom)
6857 ("r-dplyr" ,r-dplyr)
6858 ("r-forcats" ,r-forcats)
6859 ("r-ggeffects" ,r-ggeffects)
6860 ("r-ggplot2" ,r-ggplot2)
6861 ("r-glmmtmb" ,r-glmmtmb)
6862 ("r-knitr" ,r-knitr)
6864 ("r-magrittr" ,r-magrittr)
6866 ("r-modelr" ,r-modelr)
6868 ("r-psych" ,r-psych)
6869 ("r-purrr" ,r-purrr)
6870 ("r-rlang" ,r-rlang)
6871 ("r-scales" ,r-scales)
6872 ("r-sjlabelled" ,r-sjlabelled)
6873 ("r-sjmisc" ,r-sjmisc)
6874 ("r-sjstats" ,r-sjstats)
6875 ("r-tidyr" ,r-tidyr)))
6876 (home-page "https://strengejacke.github.io/sjPlot/")
6877 (synopsis "Data visualization for statistics in social science")
6879 "This package represents a collection of plotting and table output
6880 functions for data visualization. Results of various statistical
6881 analyses (that are commonly used in social sciences) can be visualized using
6882 this package, including simple and cross tabulated frequencies, histograms,
6883 box plots, (generalized) linear models, mixed effects models, principal
6884 component analysis and correlation matrices, cluster analyses, scatter plots,
6885 stacked scales, effects plots of regression models (including interaction
6886 terms) and much more. This package supports labelled data.")
6887 (license license:gpl3)))
6889 (define-public r-ini
6896 (uri (cran-uri "ini" version))
6899 "04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"))))
6900 (build-system r-build-system)
6901 (home-page "https://github.com/dvdscripter/ini")
6902 (synopsis "Read and write configuration files")
6904 "This package provides tools to parse simple @code{.ini} configuration
6905 files to an structured list. Users can manipulate this resulting list with
6906 @code{lapply()} functions. This same structured list can be used to write
6907 back to file after modifications.")
6908 (license license:gpl3)))
6917 (uri (cran-uri "gh" version))
6920 "1llinfajb0g7006jd2w1hpskxpmkjhnqarcjb71r1qvsccb2ph7k"))))
6921 (build-system r-build-system)
6923 `(("r-httr" ,r-httr)
6925 ("r-jsonlite" ,r-jsonlite)))
6926 (home-page "https://github.com/r-lib/gh#readme")
6927 (synopsis "Access the GitHub API via R")
6929 "This package provides a minimal R client to access the GitHub API.")
6930 (license license:expat)))
6939 (uri (cran-uri "fs" version))
6942 "0kqqaqqml8x3r1mdld40iwns0ylj2f52qsdh1vcn39f7w7c2ka8j"))))
6943 (build-system r-build-system)
6945 `(("r-rcpp" ,r-rcpp)))
6947 `(("pkg-config" ,pkg-config)))
6948 (home-page "http://fs.r-lib.org")
6949 (synopsis "Cross-platform file system operations based on libuv")
6951 "This package provides a cross-platform interface to file system
6952 operations, built on top of the libuv C library.")
6953 (license license:gpl3)))
6955 (define-public r-clisymbols
6957 (name "r-clisymbols")
6962 (uri (cran-uri "clisymbols" version))
6965 "1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"))))
6966 (build-system r-build-system)
6967 (home-page "https://github.com/gaborcsardi/clisymbols")
6968 (synopsis "Unicode symbols at the R prompt")
6970 "This package provides a small subset of Unicode symbols, that are useful
6971 when building command line applications. They fall back to alternatives on
6972 terminals that do not support Unicode.")
6973 (license license:expat)))
6975 (define-public r-usethis
6982 (uri (cran-uri "usethis" version))
6985 "1gadckx3sxz9gxvpkprj9x7zcgg2nz5m4q0vi76ya9li1v03rwwn"))))
6986 (build-system r-build-system)
6988 `(("r-clipr" ,r-clipr)
6989 ("r-clisymbols" ,r-clisymbols)
6990 ("r-crayon" ,r-crayon)
6995 ("r-git2r" ,r-git2r)
6997 ("r-rlang" ,r-rlang)
6998 ("r-rprojroot" ,r-rprojroot)
6999 ("r-rstudioapi" ,r-rstudioapi)
7000 ("r-whisker" ,r-whisker)))
7001 (home-page "https://github.com/r-lib/usethis")
7002 (synopsis "Automate R package and project setup")
7004 "This package helps you to automate R package and project setup tasks
7005 that are otherwise performed manually. This includes setting up unit testing,
7006 test coverage, continuous integration, Git, GitHub integration, licenses,
7007 Rcpp, RStudio projects, and more.")
7008 (license license:gpl3)))
7010 (define-public r-sessioninfo
7012 (name "r-sessioninfo")
7017 (uri (cran-uri "sessioninfo" version))
7020 "0j5f3l58fynxx3v0w62vqpii7miabszgljpja36xx9s8hikh8sqn"))))
7021 (build-system r-build-system)
7024 ("r-withr" ,r-withr)))
7025 (home-page "https://github.com/r-lib/sessioninfo#readme")
7026 (synopsis "R session information")
7028 "This package provides tools to query and print information about the
7029 current R session. It is similar to @code{utils::sessionInfo()}, but includes
7030 more information about packages, and where they were installed from.")
7031 (license license:gpl2)))
7033 (define-public r-remotes
7040 (uri (cran-uri "remotes" version))
7043 "0rsjxmhwpr51ilsdjfqn06mj8yr2d7nckcn3arv1ljn23qfkpcxa"))))
7044 (build-system r-build-system)
7045 (home-page "https://github.com/r-lib/remotes#readme")
7046 (synopsis "R package installation from remote repositories")
7048 "Download and install R packages stored in GitHub, BitBucket, or plain
7049 subversion or git repositories. This package is a lightweight replacement of
7050 the @code{install_*} functions in the @code{devtools} package. Indeed most of
7051 the code was copied over from @code{devtools}.")
7052 (license license:gpl2+)))
7054 (define-public r-xopen
7061 (uri (cran-uri "xopen" version))
7064 "1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"))))
7065 (build-system r-build-system)
7067 `(("r-processx" ,r-processx)))
7068 (home-page "https://github.com/r-lib/xopen#readme")
7069 (synopsis "Open system files, URLs, anything")
7071 "This package provides a cross-platform solution to open files,
7072 directories or URLs with their associated programs.")
7073 (license license:expat)))
7075 (define-public r-rcmdcheck
7077 (name "r-rcmdcheck")
7082 (uri (cran-uri "rcmdcheck" version))
7085 "0ys1nd7690mhwzslyzg8fq1wxr28nz8g6av5iykkrshb8lkxg7ly"))))
7086 (build-system r-build-system)
7088 `(("r-callr" ,r-callr)
7090 ("r-crayon" ,r-crayon)
7092 ("r-digest" ,r-digest)
7093 ("r-pkgbuild" ,r-pkgbuild)
7094 ("r-prettyunits" ,r-prettyunits)
7096 ("r-rprojroot" ,r-rprojroot)
7097 ("r-sessioninfo" ,r-sessioninfo)
7098 ("r-withr" ,r-withr)
7099 ("r-xopen" ,r-xopen)))
7100 (home-page "https://github.com/r-Lib/rcmdcheck#readme")
7101 (synopsis "Run R CMD check from R and capture results")
7103 "Run @code{R CMD check} from R programmatically, and capture the results
7104 of the individual checks.")
7105 (license license:expat)))
7107 (define-public r-rapportools
7109 (name "r-rapportools")
7114 (uri (cran-uri "rapportools" version))
7117 "1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"))))
7118 (build-system r-build-system)
7120 `(("r-pander" ,r-pander)
7122 ("r-reshape" ,r-reshape)))
7123 (home-page "https://cran.r-project.org/web/packages/rapportools/")
7124 (synopsis "Miscellaneous helper functions with sane defaults for reporting")
7126 "This package provides helper functions that act as wrappers to more
7127 advanced statistical methods with the advantage of having sane defaults for
7129 (license license:agpl3+)))
7131 (define-public r-pander
7138 (uri (cran-uri "pander" version))
7141 "1bd9sdghlsppmff18k5fg3i0visq9f4wc82rlhwq5m82bmgdgnyi"))))
7142 (build-system r-build-system)
7144 `(("r-digest" ,r-digest)
7145 ("r-rcpp" ,r-rcpp)))
7146 (home-page "https://rapporter.github.io/pander")
7147 (synopsis "Render R objects into Pandoc's markdown")
7149 "The main aim of the pander R package is to provide a minimal and easy
7150 tool for rendering R objects into Pandoc's markdown. The package is also
7151 capable of exporting/converting complex Pandoc documents (reports) in various
7153 ;; This package is licensed under either the AGPLv3+ or the very rarely
7155 (license license:agpl3+)))
7157 (define-public r-summarytools
7159 (name "r-summarytools")
7164 (uri (cran-uri "summarytools" version))
7167 "0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb"))))
7168 (build-system r-build-system)
7170 `(("r-htmltools" ,r-htmltools)
7171 ("r-lubridate" ,r-lubridate)
7172 ("r-matrixstats" ,r-matrixstats)
7173 ("r-pander" ,r-pander)
7175 ("r-rapportools" ,r-rapportools)
7176 ("r-rcurl" ,r-rcurl)))
7177 (home-page "https://github.com/dcomtois/summarytools")
7178 (synopsis "Tools to quickly and neatly summarize data")
7180 "This package provides tools for data frame summaries, cross-tabulations,
7181 weight-enabled frequency tables and common univariate statistics in concise
7182 tables available in a variety of formats (plain ASCII, Markdown and HTML). A
7183 good point-of-entry for exploring data, both for experienced and new R
7185 (license license:gpl2)))
7187 (define-public r-lsei
7194 (uri (cran-uri "lsei" version))
7197 "1xl06fb3is744pxlh42wx5hn1h0ab1k31wnmsmh0524kxzcyp0a7"))))
7198 (build-system r-build-system)
7200 `(("gfortran" ,gfortran)))
7201 (home-page "https://www.stat.auckland.ac.nz/~yongwang")
7202 (synopsis "Solve regression problems under equality/inequality constraints")
7204 "It contains functions that solve least squares linear regression
7205 problems under linear equality/inequality constraints. Functions for solving
7206 quadratic programming problems are also available, which transform such
7207 problems into least squares ones first.")
7208 (license license:gpl2+)))
7210 (define-public r-npsurv
7217 (uri (cran-uri "npsurv" version))
7220 "1wq4c9yfha5azjhrn40iiqkshmvh611sa90jp3lh82n4bl9zfk20"))))
7221 (build-system r-build-system)
7223 `(("r-lsei" ,r-lsei)))
7224 (home-page "https://www.stat.auckland.ac.nz/~yongwang")
7225 (synopsis "Nonparametric survival analysis")
7227 "This package contains functions for non-parametric survival analysis of
7228 exact and interval-censored observations.")
7229 (license license:gpl2+)))
7231 (define-public r-clusteval
7233 (name "r-clusteval")
7238 (uri (cran-uri "clusteval" version))
7241 "1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"))))
7242 (build-system r-build-system)
7244 `(("r-mvtnorm" ,r-mvtnorm)
7245 ("r-rcpp" ,r-rcpp)))
7246 (home-page "https://cran.r-project.org/web/packages/clusteval/")
7247 (synopsis "Evaluation of clustering algorithms")
7249 "This R package provides a suite of tools to evaluate clustering
7250 algorithms, clusterings, and individual clusters.")
7251 (license license:expat)))
7253 (define-public r-tweedie
7260 (uri (cran-uri "tweedie" version))
7263 "10fv998qjxsyx0h94fi0xbh6xbf24nwgh254n9zfnmix9vk2cqls"))))
7264 (build-system r-build-system)
7265 (native-inputs `(("gfortran" ,gfortran)))
7266 (home-page "https://cran.r-project.org/web/packages/tweedie/")
7267 (synopsis "Evaluation of Tweedie exponential family models")
7269 "Maximum likelihood computations for Tweedie families, including the
7270 series expansion (Dunn and Smyth, 2005; <doi10.1007/s11222-005-4070-y>) and
7271 the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>),
7272 and related methods.")
7273 (license license:gpl2+)))
7275 (define-public r-rcppgsl
7282 (uri (cran-uri "RcppGSL" version))
7285 "16pdapq31729db53agnb48jkvdm97167n3bigy5zazc3q3isis1m"))))
7286 (properties `((upstream-name . "RcppGSL")))
7287 (build-system r-build-system)
7289 `(("r-rcpp" ,r-rcpp)
7292 `(("r-knitr" ,r-knitr))) ; for vignettes
7293 (home-page "https://cran.r-project.org/web/packages/RcppGSL/")
7294 (synopsis "Rcpp integration for GSL vectors and matrices")
7296 "The GNU Scientific Library (or GSL) is a collection of numerical
7297 routines for scientific computing. It is particularly useful for C and C++
7298 programs as it provides a standard C interface to a wide range of mathematical
7299 routines. There are over 1000 functions in total with an extensive test
7300 suite. The RcppGSL package provides an easy-to-use interface between GSL data
7301 structures and R using concepts from Rcpp which is itself a package that eases
7302 the interfaces between R and C++.")
7303 (license license:gpl2+)))
7305 (define-public r-mvabund
7312 (uri (cran-uri "mvabund" version))
7315 "1z8bj9zbc8h7w1xki9sc2p2rq6lv8gbcmiy9819z54d7lx1i9cnj"))))
7316 (build-system r-build-system)
7318 `(("r-mass" ,r-mass)
7320 ("r-rcppgsl" ,r-rcppgsl)
7321 ("r-statmod" ,r-statmod)
7322 ("r-tweedie" ,r-tweedie)))
7323 (home-page "https://cran.r-project.org/web/packages/mvabund/")
7324 (synopsis "Statistical methods for analysing multivariate abundance data")
7326 "This package provides a set of tools for displaying, modeling and
7327 analysing multivariate abundance data in community ecology.")
7328 (license license:lgpl2.1+)))
7330 (define-public r-afex
7337 (uri (cran-uri "afex" version))
7340 "065wbxljl77zqvc2c4gpfpfyc6mbnnrf24q399q9bxmrz3sapj8n"))))
7341 (build-system r-build-system)
7345 ("r-lmertest" ,r-lmertest)
7346 ("r-pbkrtest" ,r-pbkrtest)
7347 ("r-reshape2" ,r-reshape2)))
7348 (home-page "https://afex.singmann.science/")
7349 (synopsis "Analysis of factorial experiments")
7351 "This package provides convenience functions for analyzing factorial
7352 experiments using ANOVA or mixed models.")
7353 (license license:gpl2+)))
7355 (define-public r-lmertest
7362 (uri (cran-uri "lmerTest" version))
7365 "0pia69sc8bn37mkiprdf91iilziqb865f94k6x6c26i33fg7rq4m"))))
7366 (properties `((upstream-name . "lmerTest")))
7367 (build-system r-build-system)
7369 `(("r-ggplot2" ,r-ggplot2)
7372 ("r-numderiv" ,r-numderiv)))
7373 (home-page "https://github.com/runehaubo/lmerTestR")
7374 (synopsis "Tests in linear mixed effects models")
7376 "This package provides p-values in type I, II or III anova and summary
7377 tables for @code{lmer} model fits via Satterthwaite's degrees of freedom
7378 method. A Kenward-Roger method is also available via the @code{pbkrtest}
7379 package. Model selection methods include step, drop1 and anova-like tables
7380 for random effects (ranova). Methods for Least-Square means (LS-means) and
7381 tests of linear contrasts of fixed effects are also available.")
7382 (license license:gpl2+)))
7384 (define-public r-r2glmm
7391 (uri (cran-uri "r2glmm" version))
7394 "0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"))))
7395 (build-system r-build-system)
7397 `(("r-afex" ,r-afex)
7398 ("r-data-table" ,r-data-table)
7399 ("r-dplyr" ,r-dplyr)
7400 ("r-ggplot2" ,r-ggplot2)
7401 ("r-gridextra" ,r-gridextra)
7402 ("r-lmertest" ,r-lmertest)
7404 ("r-matrix" ,r-matrix)
7406 ("r-pbkrtest" ,r-pbkrtest)))
7407 (home-page "https://github.com/bcjaeger/r2glmm")
7408 (synopsis "Compute R squared for mixed (multilevel) models")
7410 "This package computes model and semi partial R squared with confidence
7411 limits for the linear and generalized linear mixed model (LMM and GLMM). The
7412 R squared measure from L. J. Edwards et al. (2008) is extended to the GLMM
7413 using @dfn{penalized quasi-likelihood} (PQL) estimation (see Jaeger et
7415 (license license:gpl2)))
7417 (define-public r-weights
7424 (uri (cran-uri "weights" version))
7427 "0186bfpkhxngrshac6bpg37alp6slwhwd43inrm8hqg0vhpfgc4c"))))
7428 (build-system r-build-system)
7430 `(("r-gdata" ,r-gdata)
7431 ("r-hmisc" ,r-hmisc)
7432 ("r-mice" ,r-mice)))
7434 "https://cran.r-project.org/web/packages/weights/")
7435 (synopsis "Weighting and weighted statistics")
7436 (description "This package Provides a variety of functions for producing
7437 simple weighted statistics, such as weighted Pearson's correlations, partial
7438 correlations, Chi-Squared statistics, histograms, and t-tests. Also now
7439 includes some software for quickly recoding survey data and plotting point
7440 estimates from interaction terms in regressions (and multiply imputed
7441 regressions). NOTE: Weighted partial correlation calculations pulled to
7443 (license license:gpl2+)))
7445 (define-public r-rcppannoy
7447 (name "r-rcppannoy")
7452 (uri (cran-uri "RcppAnnoy" version))
7455 "1ik50ancfgcvh03n4jsqwjk8lf056rbgd70q4l4didmvh5kcyjd1"))))
7456 (properties `((upstream-name . "RcppAnnoy")))
7457 (build-system r-build-system)
7459 `(("r-rcpp" ,r-rcpp)))
7461 `(("r-knitr" ,r-knitr))) ; for vignettes
7462 (home-page "https://cran.r-project.org/web/packages/RcppAnnoy/")
7463 (synopsis "Rcpp bindings for Annoy, a library for Approximate Nearest Neighbors")
7465 "Annoy is a small C++ library for Approximate Nearest Neighbors written
7466 for efficient memory usage as well an ability to load from and save to disk.
7467 This package provides an R interface.")
7468 ;; Annoy is released under ASL 2.0, but this wrapper is released under
7470 (license (list license:gpl2+ license:asl2.0))))
7472 (define-public r-ncdf4
7479 (uri (cran-uri "ncdf4" version))
7482 "0lwjjis0b83c4l3xvqai4ckzrskd6mychck1iwxcxgjvh0d77mgd"))))
7483 (build-system r-build-system)
7485 `(("netcdf" ,netcdf)
7487 (home-page "https://cran.r-project.org/web/packages/ncdf4/index.html")
7488 (synopsis "R interface to Unidata netCDF format data files")
7490 "This package provides a high-level R interface to data files written
7491 using Unidata's netCDF library (version 4 or earlier), which are binary data
7492 files that are portable across platforms and include metadata information in
7493 addition to the data sets. Using this package, netCDF files can be opened and
7494 data sets read in easily. It is also easy to create new netCDF dimensions,
7495 variables, and files, in either version 3 or 4 format, and manipulate existing
7497 (license license:gpl3+)))
7499 (define-public r-biocmanager
7501 (name "r-biocmanager")
7506 (uri (cran-uri "BiocManager" version))
7509 "0kxs76pixk1d2lpvkyrq6nnvv1rqf55ph5f7igkadyyqirf3y2ah"))))
7510 (properties `((upstream-name . "BiocManager")))
7511 (build-system r-build-system)
7512 (home-page "https://cran.r-project.org/web/packages/BiocManager/")
7513 (synopsis "Access the Bioconductor project package repository")
7515 "This package provides a convenient tool to install and update
7516 Bioconductor packages.")
7517 (license license:artistic2.0)))
7519 (define-public r-rgl
7526 (uri (cran-uri "rgl" version))
7529 "0q8sg8fr0140ilssqhscaxkjc29w1rpp6f4k50amw3zzs9g58ak9"))))
7530 (build-system r-build-system)
7532 `(("pkg-config" ,pkg-config)))
7534 `(("freetype" ,freetype)
7538 ("ghc-pandoc" ,ghc-pandoc)
7541 `(("r-crosstalk" ,r-crosstalk)
7542 ("r-htmltools" ,r-htmltools)
7543 ("r-htmlwidgets" ,r-htmlwidgets)
7544 ("r-jsonlite" ,r-jsonlite)
7545 ("r-knitr" ,r-knitr)
7546 ("r-magrittr" ,r-magrittr)
7547 ("r-manipulatewidget" ,r-manipulatewidget)
7548 ("r-shiny" ,r-shiny)))
7549 (home-page "https://r-forge.r-project.org/projects/rgl/")
7550 (synopsis "3D visualization using OpenGL")
7552 "This package provides medium to high level functions for 3D interactive graphics,
7553 including functions modelled on base graphics (@code{plot3d()}, etc.) as well
7554 as functions for constructing representations of geometric
7555 objects (@code{cube3d()}, etc.). Output may be on screen using OpenGL, or to
7556 various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D
7557 image formats, including PNG, Postscript, SVG, PGF.")
7558 ;; Any version of the GPL.
7559 (license (list license:gpl2+ license:gpl3+))))
7561 (define-public r-multicool
7563 (name "r-multicool")
7568 (uri (cran-uri "multicool" version))
7571 "1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v"))))
7572 (build-system r-build-system)
7573 (propagated-inputs `(("r-rcpp" ,r-rcpp)))
7574 (home-page "https://cran.r-project.org/web/packages/multicool/")
7575 (synopsis "Permutations of multisets in cool-lex order")
7577 "This package provides a set of tools to permute multisets without loops
7578 or hash tables and to generate integer partitions. Cool-lex order is similar
7579 to colexicographical order.")
7580 (license license:gpl2)))
7582 (define-public r-misc3d
7589 (uri (cran-uri "misc3d" version))
7592 "0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"))))
7593 (build-system r-build-system)
7594 (home-page "https://cran.r-project.org/web/packages/misc3d/")
7595 (synopsis "Miscellaneous 3D Plots")
7597 "This package provides a collection of miscellaneous 3d plots, including
7599 ;; Any version of the GPL.
7600 (license (list license:gpl2+ license:gpl3+))))
7609 (uri (cran-uri "ks" version))
7612 "0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d"))))
7613 (build-system r-build-system)
7616 ("r-kernlab" ,r-kernlab)
7617 ("r-kernsmooth" ,r-kernsmooth)
7618 ("r-matrix" ,r-matrix)
7619 ("r-mclust" ,r-mclust)
7621 ("r-misc3d" ,r-misc3d)
7622 ("r-multicool" ,r-multicool)
7623 ("r-mvtnorm" ,r-mvtnorm)))
7624 (home-page "http://www.mvstat.net/tduong/")
7625 (synopsis "Kernel smoothing")
7627 "This package provides kernel smoothers for univariate and multivariate
7628 data, including density functions, density derivatives, cumulative
7629 distributions, modal clustering, discriminant analysis, and two-sample
7630 hypothesis testing.")
7631 ;; Either version of the GPL.
7632 (license (list license:gpl2 license:gpl3))))
7634 (define-public r-feature
7641 (uri (cran-uri "feature" version))
7644 "07hkw0bv38naj2hdsx4xxrm2dngi6w3rbvgr7s50bjic8hlgy1ra"))))
7645 (build-system r-build-system)
7648 ("r-misc3d" ,r-misc3d)
7650 (home-page "http://www.mvstat.net/tduong/")
7651 (synopsis "Inferential feature significance for kernel density estimation")
7653 "The feature package contains functions to display and compute kernel
7654 density estimates, significant gradient and significant curvature regions.
7655 Significant gradient and/or curvature regions often correspond to significant
7656 features (e.g. local modes).")
7657 ;; Either version of the GPL.
7658 (license (list license:gpl2 license:gpl3))))
7660 (define-public r-arm
7667 (uri (cran-uri "arm" version))
7670 "0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg"))))
7671 (build-system r-build-system)
7673 `(("r-abind" ,r-abind)
7677 ("r-matrix" ,r-matrix)
7678 ("r-nlme" ,r-nlme)))
7679 (home-page "https://cran.r-project.org/web/packages/arm/")
7680 (synopsis "Data analysis using regression and multilevel/hierarchical models")
7682 "This package provides functions to accompany A. Gelman and J. Hill,
7683 Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge
7684 University Press, 2007.")
7685 (license license:gpl3+)))
7687 (define-public r-circular
7694 (uri (cran-uri "circular" version))
7697 "0hki85rs8wc5950pjaw28q54rly2napfbcrx3pchlfap6wwy5kkn"))))
7698 (build-system r-build-system)
7700 `(("r-boot" ,r-boot)
7701 ("r-mvtnorm" ,r-mvtnorm)))
7703 `(("gfortran" ,gfortran)))
7704 (home-page "https://cran.r-project.org/web/packages/circular/")
7705 (synopsis "Circular statistics")
7707 "This package provides tools for circular statistics, from \"Topics in
7708 circular Statistics\" (2001) S. Rao Jammalamadaka and A. SenGupta, World
7710 (license license:gpl2+)))
7712 (define-public r-activity
7719 (uri (cran-uri "activity" version))
7722 "1lqajgxfps2h6amz1791vp3f52rs9ghmanq1nqfxqd2jmk3idkrx"))))
7723 (build-system r-build-system)
7725 `(("r-circular" ,r-circular)
7726 ("r-overlap" ,r-overlap)
7727 ("r-pbapply" ,r-pbapply)))
7728 (home-page "https://cran.r-project.org/web/packages/activity/")
7729 (synopsis "Animal activity statistics")
7731 "This package provides functions to fit kernel density functions to
7732 animal activity time data; plot activity distributions; quantify overall
7733 levels of activity; statistically compare activity metrics through
7734 bootstrapping; and evaluate variation in linear variables with time (or other
7735 circular variables).")
7736 (license license:gpl3)))
7738 (define-public r-ouch
7745 (uri (cran-uri "ouch" version))
7748 "0xkwwi62vdahlcg3k32zb1nfwsx87zdssk79mvcxgfsw9bw4gahx"))))
7749 (build-system r-build-system)
7750 (propagated-inputs `(("r-subplex" ,r-subplex)))
7751 (home-page "http://kingaa.github.io/ouch/")
7752 (synopsis "Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses")
7754 "This package provides tools to fit and compare Ornstein-Uhlenbeck models
7755 for evolution along a phylogenetic tree.")
7756 (license license:gpl2+)))