gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017, 2020 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018, 2019 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
  14 ;;; Copyright © 2020 Mathieu Othacehe <m.othacehe@gmail.com>
  15 ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
  16 ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org>
  17 ;;; Copyright © 2020 Jesse Gibbons <jgibbons2357+guix@gmail.com>
  18 ;;; Copyright © 2020 Martin Becze <mjbecze@riseup.net>
  19 ;;;
  20 ;;; This file is part of GNU Guix.
  21 ;;;
  22 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  23 ;;; under the terms of the GNU General Public License as published by
  24 ;;; the Free Software Foundation; either version 3 of the License, or (at
  25 ;;; your option) any later version.
  26 ;;;
  27 ;;; GNU Guix is distributed in the hope that it will be useful, but
  28 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  29 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  30 ;;; GNU General Public License for more details.
  31 ;;;
  32 ;;; You should have received a copy of the GNU General Public License
  33 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  34
  35 (define-module (gnu packages package-management)
  36   #:use-module (gnu packages)
  37   #:use-module (gnu packages acl)
  38   #:use-module (gnu packages attr)
  39   #:use-module (gnu packages avahi)
  40   #:use-module (gnu packages autotools)
  41   #:use-module (gnu packages backup)
  42   #:use-module (gnu packages base)
  43   #:use-module (gnu packages bash)
  44   #:use-module (gnu packages bdw-gc)
  45   #:use-module (gnu packages bison)
  46   #:use-module (gnu packages boost)
  47   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  48   #:use-module (gnu packages check)
  49   #:use-module (gnu packages compression)
  50   #:use-module (gnu packages cpio)
  51   #:use-module (gnu packages crypto)
  52   #:use-module (gnu packages curl)
  53   #:use-module (gnu packages databases)
  54   #:use-module (gnu packages dbm)
  55   #:use-module (gnu packages docbook)
  56   #:use-module (gnu packages file)
  57   #:use-module (gnu packages gettext)
  58   #:use-module (gnu packages glib)
  59   #:use-module (gnu packages gnome)
  60   #:use-module (gnu packages gnupg)
  61   #:use-module (gnu packages graphviz)
  62   #:use-module (gnu packages gtk)
  63   #:use-module (gnu packages guile)
  64   #:use-module (gnu packages guile-xyz)
  65   #:use-module (gnu packages hurd)
  66   #:use-module (gnu packages libedit)
  67   #:use-module (gnu packages linux)
  68   #:use-module (gnu packages lisp)
  69   #:use-module (gnu packages man)
  70   #:use-module (gnu packages nettle)
  71   #:use-module (gnu packages networking)
  72   #:use-module (gnu packages nss)
  73   #:use-module (gnu packages patchutils)
  74   #:use-module (gnu packages perl)
  75   #:use-module (gnu packages perl-check)
  76   #:use-module (gnu packages pkg-config)
  77   #:use-module (gnu packages popt)
  78   #:use-module (gnu packages python)
  79   #:use-module (gnu packages python-web)
  80   #:use-module (gnu packages python-xyz)
  81   #:use-module (gnu packages serialization)
  82   #:use-module (gnu packages sqlite)
  83   #:use-module (gnu packages ssh)
  84   #:use-module (gnu packages texinfo)
  85   #:use-module (gnu packages time)
  86   #:use-module (gnu packages tls)
  87   #:use-module (gnu packages vim)
  88   #:use-module (gnu packages virtualization)
  89   #:use-module (gnu packages web)
  90   #:use-module (gnu packages xml)
  91   #:use-module (gnu packages xorg)
  92   #:use-module (guix build-system glib-or-gtk)
  93   #:use-module (guix build-system gnu)
  94   #:use-module (guix build-system meson)
  95   #:use-module (guix build-system python)
  96   #:use-module (guix download)
  97   #:use-module (guix gexp)
  98   #:use-module (guix git-download)
  99   #:use-module ((guix licenses) #:prefix license:)
 100   #:use-module (guix packages)
 101   #:use-module (guix utils)
 102   #:use-module (ice-9 match)
 103   #:use-module (srfi srfi-1))
 104
 105 (define (boot-guile-uri arch)
 106   "Return the URI for the bootstrap Guile tarball for ARCH."
 107   (cond ((string=? "armhf" arch)
 108          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 109                         arch "-linux"
 110                         "/20150101/guile-2.0.11.tar.xz"))
 111         ((string=? "aarch64" arch)
 112          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 113                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 114         (else
 115          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 116                         arch "-linux"
 117                         "/20131110/guile-2.0.9.tar.xz"))))
 118
 119 ;; NOTE: The commit IDs used here form a linked list threaded through the git
 120 ;; history. In a phenomenon known as boot-stripping, not only the head of this
 121 ;; list is used, but also a few older versions, when a guix from this package is
 122 ;; used to build something also depending on guix.
 123 ;;
 124 ;; Therefore, if, by accident, you set this package to a non-existent commit ID,
 125 ;; it is insufficient to simply correct it with the latest commit.
 126 ;; Instead, please push one commit that rolls back Guix to before the mistake,
 127 ;; and then another that points to the first one. That way, the faulty commit
 128 ;; won't appear on the linked list.
 129 (define-public guix
 130   ;; Latest version of Guix, which may or may not correspond to a release.
 131   ;; Note: the 'update-guix-package.scm' script expects this definition to
 132   ;; start precisely like this.
 133   (let ((version "1.1.0")
 134         (commit "1c6d98533153bc8e0e36236e7fbcf1eb5e178d26")
 135         (revision 31))
 136     (package
 137       (name "guix")
 138
 139       (version (if (zero? revision)
 140                    version
 141                    (string-append version "-"
 142                                   (number->string revision)
 143                                   "." (string-take commit 7))))
 144       (source (origin
 145                 (method git-fetch)
 146                 (uri (git-reference
 147                       (url "https://git.savannah.gnu.org/git/guix.git")
 148                       (commit commit)))
 149                 (sha256
 150                  (base32
 151                   "0cnc0fq0krdgh28k7spivy0jqv0k5vx59vxi3yxdsyqn8iznnqn1"))
 152                 (file-name (string-append "guix-" version "-checkout"))))
 153       (build-system gnu-build-system)
 154       (arguments
 155        `(#:configure-flags (list
 156                             "--localstatedir=/var"
 157                             "--sysconfdir=/etc"
 158                             (string-append "--with-bash-completion-dir="
 159                                            (assoc-ref %outputs "out")
 160                                            "/etc/bash_completion.d")
 161
 162                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 163                             ;; we don't keep a reference to Graphviz, whose
 164                             ;; closure is pretty big (too big for the Guix
 165                             ;; system installation image.)
 166                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 167
 168                             ;; To avoid problems with the length of shebangs,
 169                             ;; choose a fixed-width and short directory name
 170                             ;; for tests.
 171                             "ac_cv_guix_test_root=/tmp/guix-tests"
 172                             ,@(if (hurd-target?) '("--with-courage") '()))
 173          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 174
 175          #:modules ((guix build gnu-build-system)
 176                     (guix build utils)
 177                     (srfi srfi-26)
 178                     (ice-9 popen)
 179                     (ice-9 rdelim))
 180
 181          #:phases (modify-phases %standard-phases
 182                     (replace 'bootstrap
 183                       (lambda _
 184                         ;; Make sure 'msgmerge' can modify the PO files.
 185                         (for-each (lambda (po)
 186                                     (chmod po #o666))
 187                                   (find-files "." "\\.po$"))
 188
 189                         (patch-shebang "build-aux/git-version-gen")
 190
 191                         (call-with-output-file ".tarball-version"
 192                           (lambda (port)
 193                             (display ,version port)))
 194
 195                         ;; Install SysV init files to $(prefix)/etc rather
 196                         ;; than to /etc.
 197                         (substitute* "nix/local.mk"
 198                           (("^sysvinitservicedir = .*$")
 199                            (string-append "sysvinitservicedir = \
 200 $(prefix)/etc/init.d\n")))
 201
 202                         ;; Install OpenRC init files to $(prefix)/etc rather
 203                         ;; than to /etc.
 204                         (substitute* "nix/local.mk"
 205                           (("^openrcservicedir = .*$")
 206                            (string-append "openrcservicedir = \
 207 $(prefix)/etc/init.d\n")))
 208
 209                         (invoke "sh" "bootstrap")))
 210                     (add-before 'build 'use-host-compressors
 211                       (lambda* (#:key inputs target #:allow-other-keys)
 212                         (when target
 213                           ;; Use host compressors.
 214                           (let ((bzip2 (assoc-ref inputs "bzip2"))
 215                                 (gzip (assoc-ref inputs "gzip"))
 216                                 (xz (assoc-ref inputs "xz")))
 217                             (substitute* "guix/config.scm"
 218                               (("\"[^\"]*/bin/bzip2")
 219                                (string-append "\"" bzip2 "/bin/bzip2"))
 220                               (("\"[^\"]*/bin/gzip") gzip
 221                                (string-append "\"" gzip "/bin/gzip"))
 222                               (("\"[^\"]*/bin//xz")
 223                                (string-append "\"" xz "/bin/xz")))))
 224                         #t))
 225                     (add-before 'check 'copy-bootstrap-guile
 226                       (lambda* (#:key system target inputs #:allow-other-keys)
 227                         ;; Copy the bootstrap guile tarball in the store
 228                         ;; used by the test suite.
 229                         (define (intern file recursive?)
 230                           ;; Note: don't use 'guix download' here because we
 231                           ;; need to set the 'recursive?' argument.
 232                           (define base
 233                             (strip-store-file-name file))
 234
 235                           (define code
 236                             `(begin
 237                                (use-modules (guix))
 238                                (with-store store
 239                                  (let* ((item (add-to-store store ,base
 240                                                             ,recursive?
 241                                                             "sha256" ,file))
 242                                         (root (string-append "/tmp/gc-root-"
 243                                                              (basename item))))
 244                                    ;; Register a root so that the GC tests
 245                                    ;; don't delete those.
 246                                    (symlink item root)
 247                                    (add-indirect-root store root)))))
 248
 249                           (invoke "./test-env" "guile" "-c"
 250                                   (object->string code)))
 251
 252                         (unless target
 253                           (intern (assoc-ref inputs "boot-guile") #f)
 254
 255                           ;; On x86_64 some tests need the i686 Guile.
 256                           ,@(if (and (not (%current-target-system))
 257                                      (string=? (%current-system)
 258                                                "x86_64-linux"))
 259                                 '((intern (assoc-ref inputs "boot-guile/i686") #f))
 260                                 '())
 261
 262                           ;; Copy the bootstrap executables.
 263                           (for-each (lambda (input)
 264                                       (intern (assoc-ref inputs input) #t))
 265                                     '("bootstrap/bash" "bootstrap/mkdir"
 266                                       "bootstrap/tar" "bootstrap/xz")))
 267                         #t))
 268                     (add-after 'unpack 'disable-failing-tests
 269                       ;; XXX FIXME: These tests fail within the build container.
 270                       (lambda _
 271                         (substitute* "tests/syscalls.scm"
 272                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 273                            (string-append "(test-skip 1)\n" all)))
 274                         (substitute* "tests/containers.scm"
 275                           (("^\\(test-(assert|equal)" all)
 276                            (string-append "(test-skip 1)\n" all)))
 277                         (when (file-exists? "tests/guix-environment-container.sh")
 278                           (substitute* "tests/guix-environment-container.sh"
 279                             (("guix environment --version")
 280                              "exit 77\n")))
 281                         #t))
 282                     (add-before 'check 'set-SHELL
 283                       (lambda _
 284                         ;; 'guix environment' tests rely on 'SHELL' having a
 285                         ;; correct value, so set it.
 286                         (setenv "SHELL" (which "sh"))
 287                         #t))
 288                     (add-after 'install 'wrap-program
 289                       (lambda* (#:key inputs native-inputs outputs target
 290                                 #:allow-other-keys)
 291                         ;; Make sure the 'guix' command finds GnuTLS,
 292                         ;; Guile-JSON, and Guile-Git automatically.
 293                         (let* ((out    (assoc-ref outputs "out"))
 294                                (guile  ,@(if (%current-target-system)
 295                                              '((assoc-ref native-inputs "guile"))
 296                                              '((assoc-ref inputs "guile"))))
 297                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 298                                (json   (assoc-ref inputs "guile-json"))
 299                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 300                                (zlib   (assoc-ref inputs "guile-zlib"))
 301                                (lzlib  (assoc-ref inputs "guile-lzlib"))
 302                                (git    (assoc-ref inputs "guile-git"))
 303                                (bs     (assoc-ref inputs
 304                                                   "guile-bytestructures"))
 305                                (ssh    (assoc-ref inputs "guile-ssh"))
 306                                (gnutls (assoc-ref inputs "gnutls"))
 307                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 308                                (deps   (list gcrypt json sqlite gnutls
 309                                              git bs ssh zlib lzlib))
 310                                (effective
 311                                 (read-line
 312                                  (open-pipe* OPEN_READ
 313                                              (string-append guile "/bin/guile")
 314                                              "-c" "(display (effective-version))")))
 315                                (path   (string-join
 316                                         (map (cut string-append <>
 317                                                   "/share/guile/site/"
 318                                                   effective)
 319                                              (delete #f deps))
 320                                         ":"))
 321                                (gopath (string-join
 322                                         (map (cut string-append <>
 323                                                   "/lib/guile/" effective
 324                                                   "/site-ccache")
 325                                              (delete #f deps))
 326                                         ":"))
 327                                (locpath (string-append locales "/lib/locale")))
 328
 329                           (wrap-program (string-append out "/bin/guix")
 330                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 331                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 332                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 333
 334                           (when target
 335                             ;; XXX Touching wrap-program rebuilds world
 336                             (let ((bash (assoc-ref inputs "bash")))
 337                               (substitute* (string-append out "/bin/guix")
 338                                 (("^#!.*/bash") (string-append "#! " bash "/bin/bash")))))
 339                           #t))))))
 340       (native-inputs `(("pkg-config" ,pkg-config)
 341
 342                        ;; Guile libraries are needed here for
 343                        ;; cross-compilation.
 344                        ("guile" ,guile-3.0-latest) ;for faster builds
 345                        ("gnutls" ,gnutls)
 346                        ("guile-gcrypt" ,guile-gcrypt)
 347                        ("guile-json" ,guile-json-4)
 348                        ("guile-sqlite3" ,guile-sqlite3)
 349                        ("guile-zlib" ,guile-zlib)
 350                        ("guile-lzlib" ,guile-lzlib)
 351                        ("guile-ssh" ,guile-ssh)
 352                        ("guile-git" ,guile-git)
 353
 354                        ;; XXX: Keep the development inputs here even though
 355                        ;; they're unnecessary, just so that 'guix environment
 356                        ;; guix' always contains them.
 357                        ("autoconf" ,autoconf-wrapper)
 358                        ("automake" ,automake)
 359                        ("gettext" ,gettext-minimal)
 360                        ("texinfo" ,texinfo)
 361                        ("graphviz" ,graphviz)
 362                        ("help2man" ,help2man)
 363                        ("po4a" ,po4a)))
 364       (inputs
 365        `(("bzip2" ,bzip2)
 366          ("gzip" ,gzip)
 367          ("sqlite" ,sqlite)
 368          ("libgcrypt" ,libgcrypt)
 369
 370          ("guile" ,guile-3.0-latest)
 371
 372          ;; Some of the tests use "unshare" when it is available.
 373          ("util-linux" ,util-linux)
 374
 375          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 376          ;; have it here.
 377          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 378          ,@(if (and (not (%current-target-system))
 379                     (string=? (%current-system) "x86_64-linux"))
 380                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 381                '())
 382          ,@(if (%current-target-system)
 383                `(("bash" ,bash-minimal)
 384                  ("xz" ,xz))
 385                '())
 386
 387          ;; Tests also rely on these bootstrap executables.
 388          ("bootstrap/bash" ,(bootstrap-executable "bash" (%current-system)))
 389          ("bootstrap/mkdir" ,(bootstrap-executable "mkdir" (%current-system)))
 390          ("bootstrap/tar" ,(bootstrap-executable "tar" (%current-system)))
 391          ("bootstrap/xz" ,(bootstrap-executable "xz" (%current-system)))
 392
 393          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 394       (propagated-inputs
 395        `(("gnutls" ,(if (%current-target-system) gnutls-3.6.14 gnutls))
 396          ("guile-gcrypt" ,guile-gcrypt)
 397          ("guile-json" ,guile-json-4)
 398          ("guile-sqlite3" ,guile-sqlite3)
 399          ("guile-ssh" ,guile-ssh)
 400          ("guile-git" ,guile-git)
 401          ("guile-zlib" ,guile-zlib)
 402          ("guile-lzlib" ,guile-lzlib)))
 403
 404       (home-page "https://www.gnu.org/software/guix/")
 405       (synopsis "Functional package manager for installed software packages and versions")
 406       (description
 407        "GNU Guix is a functional package manager for the GNU system, and is
 408 also a distribution thereof.  It includes a virtual machine image.  Besides
 409 the usual package management features, it also supports transactional
 410 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 411 the Nix package manager.")
 412       (license license:gpl3+)
 413       (properties '((ftp-server . "alpha.gnu.org"))))))
 414
 415 (define-public guix-daemon
 416   ;; This package is for internal consumption: it allows us to quickly build
 417   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 418   ;; pull'.
 419   (package
 420     (inherit guix)
 421     (properties `((hidden? . #t)))
 422     (name "guix-daemon")
 423
 424     ;; Use a minimum set of dependencies.
 425     (native-inputs
 426      (fold alist-delete (package-native-inputs guix)
 427            '("po4a" "graphviz" "help2man")))
 428     (inputs
 429      `(("gnutls" ,gnutls)
 430        ("guile-git" ,guile-git)
 431        ("guile-json" ,guile-json-3)
 432        ("guile-gcrypt" ,guile-gcrypt)
 433        ,@(fold alist-delete (package-inputs guix)
 434                '("boot-guile" "boot-guile/i686" "util-linux"))))
 435
 436     (propagated-inputs '())
 437
 438     (arguments
 439      (substitute-keyword-arguments (package-arguments guix)
 440        ((#:configure-flags flags '())
 441         ;; Pretend we have those libraries; we don't actually need them.
 442         `(append ,flags
 443                  '("guix_cv_have_recent_guile_sqlite3=yes"
 444                    "guix_cv_have_recent_guile_ssh=yes")))
 445        ((#:tests? #f #f)
 446         #f)
 447        ((#:phases phases '%standard-phases)
 448         `(modify-phases ,phases
 449            (add-after 'unpack 'change-default-guix
 450              (lambda _
 451                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 452                ;; Here we use a questionable hack where we hard-code root's
 453                ;; current guix, which could be wrong (XXX).  Note that scripts
 454                ;; like 'guix perform-download' do not run as root so we assume
 455                ;; that they have access to /var/guix/profiles/per-user/root.
 456                (substitute* "nix/libstore/globals.cc"
 457                  (("guixProgram = (.*)nixBinDir + \"/guix\"" _ before)
 458                   (string-append "guixProgram = " before
 459                                  "/var/guix/profiles/per-user/root\
 460 /current-guix/bin/guix")))
 461                #t))
 462            (replace 'build
 463              (lambda _
 464                (invoke "make" "nix/libstore/schema.sql.hh")
 465                (invoke "make" "-j" (number->string
 466                                     (parallel-job-count))
 467                        "guix-daemon")))
 468            (delete 'copy-bootstrap-guile)
 469            (replace 'install
 470              (lambda* (#:key outputs #:allow-other-keys)
 471                (invoke "make" "install-binPROGRAMS")))
 472            (delete 'wrap-program)))))))
 473
 474
 475 (define-public guile2.2-guix
 476   (package
 477     (inherit guix)
 478     (name "guile2.2-guix")
 479     (native-inputs
 480      `(("guile" ,guile-2.2)
 481        ("gnutls" ,guile2.2-gnutls)
 482        ("guile-gcrypt" ,guile2.2-gcrypt)
 483        ("guile-json" ,guile2.2-json)
 484        ("guile-sqlite3" ,guile2.2-sqlite3)
 485        ("guile-ssh" ,guile2.2-ssh)
 486        ("guile-git" ,guile2.2-git)
 487        ,@(fold alist-delete (package-native-inputs guix)
 488                '("guile" "gnutls" "guile-gcrypt" "guile-json"
 489                  "guile-sqlite3" "guile-ssh" "guile-git"))))
 490     (inputs
 491      `(("guile" ,guile-2.2)
 492        ,@(alist-delete "guile" (package-inputs guix))))
 493     (propagated-inputs
 494      `(("gnutls" ,gnutls)
 495        ("guile-gcrypt" ,guile2.2-gcrypt)
 496        ("guile-json" ,guile2.2-json)
 497        ("guile-sqlite3" ,guile2.2-sqlite3)
 498        ("guile-ssh" ,guile2.2-ssh)
 499        ("guile-git" ,guile2.2-git)))))
 500
 501 (define-public guile3.0-guix
 502   (deprecated-package "guile3.0-guix" guix))
 503
 504 (define-public guix-minimal
 505   ;; A version of Guix which is built with the minimal set of dependencies, as
 506   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 507   ;; marked as hidden.
 508   (hidden-package
 509    (package
 510      (inherit guix)
 511      (name "guix-minimal")
 512      (native-inputs
 513       (fold alist-delete
 514             (package-native-inputs guix)
 515             '("guile-ssh")))
 516      (propagated-inputs
 517       (fold alist-delete
 518             (package-propagated-inputs guix)
 519             '("guile-ssh"))))))
 520
 521 (define (source-file? file stat)
 522   "Return true if FILE is likely a source file, false if it is a typical
 523 generated file."
 524   (define (wrong-extension? file)
 525     (or (string-suffix? "~" file)
 526         (member (file-extension file)
 527                 '("o" "a" "lo" "so" "go"))))
 528
 529   (match (basename file)
 530     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 531      #f)
 532     ((? wrong-extension?)
 533      #f)
 534     (_
 535      #t)))
 536
 537 (define-public current-guix-package
 538   ;; This parameter allows callers to override the package that 'current-guix'
 539   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 540   ;; for instance because it's not running from a source code checkout.
 541   (make-parameter #f))
 542
 543 (define-public current-guix
 544   (let* ((repository-root (delay (canonicalize-path
 545                                   (string-append (current-source-directory)
 546                                                  "/../.."))))
 547          (select? (delay (or (git-predicate (force repository-root))
 548                              source-file?))))
 549     (lambda ()
 550       "Return a package representing Guix built from the current source tree.
 551 This works by adding the current source tree to the store (after filtering it
 552 out) and returning a package that uses that as its 'source'."
 553       (or (current-guix-package)
 554           (package
 555             (inherit guix)
 556             (version (string-append (package-version guix) "+"))
 557             (source (local-file (force repository-root) "guix-current"
 558                                 #:recursive? #t
 559                                 #:select? (force select?))))))))
 560
 561 \f
 562 ;;;
 563 ;;; Other tools.
 564 ;;;
 565
 566 (define-public nix
 567   (package
 568     (name "nix")
 569     (version "2.3.7")
 570     (source (origin
 571              (method url-fetch)
 572              (uri (string-append "http://nixos.org/releases/nix/nix-"
 573                                  version "/nix-" version ".tar.xz"))
 574              (sha256
 575               (base32
 576                "15p50jkss6szinisb7axhxybgfi29sm9grz7mxwair8ljj2553yx"))))
 577     (build-system gnu-build-system)
 578     (arguments
 579      `(#:configure-flags '("--sysconfdir=/etc" "--enable-gc")
 580        #:phases
 581        (modify-phases %standard-phases
 582          (replace 'install
 583            ;; Don't try & fail to create subdirectories in /etc, but keep them
 584            ;; in the output as examples.
 585            (lambda* (#:key (make-flags '()) outputs #:allow-other-keys)
 586              (let* ((out (assoc-ref outputs "out"))
 587                     (etc (string-append out "/etc")))
 588                (apply invoke "make" "install"
 589                       (string-append "sysconfdir=" etc)
 590                       (string-append "profiledir=" etc "/profile.d")
 591                       make-flags)))))))
 592     (native-inputs `(("pkg-config" ,pkg-config)))
 593     (inputs `(("boost" ,boost)
 594               ("brotli" ,brotli)
 595               ("bzip2" ,bzip2)
 596               ("curl" ,curl)
 597               ("editline" ,editline)
 598               ("libgc" ,libgc)
 599               ("libseccomp" ,libseccomp)
 600               ("libsodium" ,libsodium)
 601               ("openssl" ,openssl)
 602               ("sqlite" ,sqlite)
 603               ("xz" ,xz)))
 604     (home-page "https://nixos.org/nix/")
 605     (synopsis "The Nix package manager")
 606     (description
 607      "Nix is a purely functional package manager.  This means that it treats
 608 packages like values in purely functional programming languages such as
 609 Haskell—they are built by functions that don't have side-effects, and they
 610 never change after they have been built.  Nix stores packages in the Nix
 611 store, usually the directory /nix/store, where each package has its own unique
 612 sub-directory.")
 613     (license license:lgpl2.1+)))
 614
 615 (define-public stow
 616   (package
 617     (name "stow")
 618     (version "2.3.1")
 619     (source (origin
 620               (method url-fetch)
 621               (uri (string-append "mirror://gnu/stow/stow-"
 622                                   version ".tar.gz"))
 623               (sha256
 624                (base32
 625                 "0jrxy12ywn7smdzdnvwzjw77l6knx6jkj2rckgykg1dpf6bdkm89"))))
 626     (build-system gnu-build-system)
 627     (inputs
 628      `(("perl" ,perl)))
 629     (native-inputs
 630      `(("perl-test-simple" ,perl-test-simple)
 631        ("perl-test-output" ,perl-test-output)
 632        ("perl-capture-tiny" ,perl-capture-tiny)
 633        ("perl-io-stringy" ,perl-io-stringy)))
 634     (home-page "https://www.gnu.org/software/stow/")
 635     (synopsis "Managing installed software packages")
 636     (description
 637      "GNU Stow is a symlink manager.  It generates symlinks to directories
 638 of data and makes them appear to be merged into the same directory.  It is
 639 typically used for managing software packages installed from source, by
 640 letting you install them apart in distinct directories and then create
 641 symlinks to the files in a common directory such as /usr/local.")
 642     (license license:gpl3+)))
 643
 644 (define-public rpm
 645   (package
 646     (name "rpm")
 647     (version "4.14.2.1")
 648     (source (origin
 649               (method url-fetch)
 650               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 651                                   (version-major+minor version) ".x/rpm-"
 652                                   version ".tar.bz2"))
 653               (sha256
 654                (base32
 655                 "1nmck2fq9h85fgs3zhh6w1avlw5y16cbz5khd459ry3jfd5w4f8i"))))
 656     (build-system gnu-build-system)
 657     (arguments
 658      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 659                            "--enable-python"
 660                            "--without-lua")
 661        #:phases (modify-phases %standard-phases
 662                   (add-before 'configure 'set-nss-library-path
 663                     (lambda* (#:key inputs #:allow-other-keys)
 664                       (let ((nss (assoc-ref inputs "nss")))
 665                         (setenv "LIBRARY_PATH"
 666                                 (string-append (getenv "LIBRARY_PATH") ":"
 667                                                nss "/lib/nss"))
 668                         #t))))))
 669     (native-inputs
 670      `(("pkg-config" ,pkg-config)))
 671     (inputs
 672      `(("python" ,python)
 673        ("xz" ,xz)
 674        ("bdb" ,bdb)
 675        ("popt" ,popt)
 676        ("nss" ,nss)
 677        ("nspr" ,nspr)
 678        ("libarchive" ,libarchive)
 679        ("file" ,file)
 680        ("bzip2" ,bzip2)
 681        ("zlib" ,zlib)
 682        ("cpio" ,cpio)))
 683     (home-page "https://rpm.org/")
 684     (synopsis "The RPM Package Manager")
 685     (description
 686      "The RPM Package Manager (RPM) is a command-line driven package
 687 management system capable of installing, uninstalling, verifying, querying,
 688 and updating computer software packages.  Each software package consists of an
 689 archive of files along with information about the package like its version, a
 690 description.  There is also a library permitting developers to manage such
 691 transactions from C or Python.")
 692
 693     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 694     (license license:gpl2+)))
 695
 696 (define-public python-anaconda-client
 697   (package
 698     (name "python-anaconda-client")
 699     (version "1.6.3")
 700     (source
 701      (origin
 702        (method git-fetch)
 703        (uri (git-reference
 704               (url "https://github.com/Anaconda-Platform/anaconda-client")
 705               (commit version)))
 706        (file-name (git-file-name name version))
 707        (sha256
 708         (base32
 709          "0w1bfxnydjl9qp53r2gcvr6vlpdqqilcrzqxrll9sgg6vwdyiyyp"))))
 710     (build-system python-build-system)
 711     (propagated-inputs
 712      `(("python-pyyaml" ,python-pyyaml)
 713        ("python-requests" ,python-requests)
 714        ("python-clyent" ,python-clyent)))
 715     (native-inputs
 716      `(("python-pytz" ,python-pytz)
 717        ("python-dateutil" ,python-dateutil)
 718        ("python-mock" ,python-mock)
 719        ("python-coverage" ,python-coverage)
 720        ("python-pillow" ,python-pillow)))
 721     (arguments
 722      `(#:phases
 723        (modify-phases %standard-phases
 724          ;; This is needed for some tests.
 725          (add-before 'check 'set-up-home
 726            (lambda* _ (setenv "HOME" "/tmp") #t))
 727          (add-before 'check 'remove-network-tests
 728            (lambda* _
 729              ;; Remove tests requiring a network connection
 730              (let ((network-tests '("tests/test_upload.py"
 731                                     "tests/test_authorizations.py"
 732                                     "tests/test_login.py"
 733                                     "tests/test_whoami.py"
 734                                     "utils/notebook/tests/test_data_uri.py"
 735                                     "utils/notebook/tests/test_base.py"
 736                                     "utils/notebook/tests/test_downloader.py"
 737                                     "inspect_package/tests/test_conda.py")))
 738                (with-directory-excursion "binstar_client"
 739                  (for-each delete-file network-tests)))
 740              #t)))))
 741     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 742     (synopsis "Anaconda Cloud command line client library")
 743     (description
 744      "Anaconda Cloud command line client library provides an interface to
 745 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 746 environments.")
 747     (license license:bsd-3)))
 748
 749 (define-public python2-anaconda-client
 750   (package-with-python2 python-anaconda-client))
 751
 752 (define-public python-conda-package-handling
 753   (package
 754     (name "python-conda-package-handling")
 755     (version "1.6.0")
 756     (source
 757      (origin
 758        (method git-fetch)
 759        (uri (git-reference
 760              (url "https://github.com/conda/conda-package-handling/")
 761              (commit version)))
 762        (file-name (git-file-name name version))
 763        (sha256
 764         (base32
 765          "0bqbs6a8jbjmbn47n5n1p529cx7pf4vgfnhqca9mflgidfb5i0jf"))))
 766     (build-system python-build-system)
 767     (arguments
 768      `(#:phases
 769        (modify-phases %standard-phases
 770          (add-after 'unpack 'use-unmodified-libarchive
 771            (lambda _
 772              (substitute* "setup.py"
 773                (("archive_and_deps") "archive"))
 774              #t))
 775          (replace 'check
 776            (lambda* (#:key inputs outputs #:allow-other-keys)
 777              (add-installed-pythonpath inputs outputs)
 778              (invoke "pytest" "-vv" "tests"
 779                      "-k"
 780                      (string-append
 781                       ;; TODO: these three fail because the mocker fixture
 782                       ;; cannot be found
 783                       "not test_rename_to_trash"
 784                       " and not test_api_extract_tarball_with_libarchive_import_error"
 785                       " and not test_delete_trash"
 786                       ;; TODO: this one does not raise an exception when it
 787                       ;; should.
 788                       " and not test_secure_refusal_to_extract_abs_paths")))))))
 789     (propagated-inputs
 790      `(("python-six" ,python-six)
 791        ("python-tqdm" ,python-tqdm)))
 792     (inputs
 793      `(("libarchive" ,libarchive)))
 794     (native-inputs
 795      `(("python-cython" ,python-cython)
 796        ("python-pytest" ,python-pytest)
 797        ("python-pytest-cov" ,python-pytest-cov)
 798        ("python-mock" ,python-mock)))
 799     (home-page "https://conda.io")
 800     (synopsis "Create and extract conda packages of various formats")
 801     (description
 802      "This library is an abstraction of Conda package handling and a tool for
 803 extracting, creating, and converting between formats.")
 804     (license license:bsd-3)))
 805
 806 (define-public conda
 807   (package
 808     (name "conda")
 809     (version "4.8.3")
 810     (source
 811      (origin
 812        (method git-fetch)
 813        (uri (git-reference
 814               (url "https://github.com/conda/conda")
 815               (commit version)))
 816        (file-name (git-file-name name version))
 817        (sha256
 818         (base32
 819          "0iv1qzk21jsk6vdp3106xvpvl68zgfdqb3kyzpya87jhkl204l7r"))))
 820     (build-system python-build-system)
 821     (arguments
 822      `(#:phases
 823        (modify-phases %standard-phases
 824          (add-after 'unpack 'fix-permissions
 825            (lambda _
 826              ;; This file is no longer writable after downloading with
 827              ;; 'git-fetch'
 828              (make-file-writable
 829               "tests/conda_env/support/saved-env/environment.yml")
 830              #t))
 831          (add-after 'unpack 'correct-python-executable-name
 832            (lambda* (#:key inputs #:allow-other-keys)
 833              (let ((python (assoc-ref inputs "python-wrapper")))
 834                #;
 835                (substitute* "conda/common/path.py"
 836                  (("python_version or ''")
 837                   "python_version or '3'"))
 838                (substitute* "conda/core/initialize.py"
 839                  (("python_exe = join")
 840                   (format #f "python_exe = \"~a/bin/python\" #"
 841                           python))))
 842              #t))
 843          (add-after 'unpack 'do-not-use-python-root-as-prefix
 844            (lambda* (#:key inputs outputs #:allow-other-keys)
 845              (let ((out (assoc-ref outputs "out"))
 846                    (python (assoc-ref inputs "python-wrapper")))
 847                (substitute* "tests/core/test_initialize.py"
 848                  (("\"\"\"\\) % conda_prefix")
 849                   (format #f "\"\"\") % \"~a\"" python))
 850                  (("CONDA_PYTHON_EXE \"%s\"' % join\\(conda_prefix")
 851                   (format #f "CONDA_PYTHON_EXE \"%s\"' % join(\"~a\""
 852                           python))
 853                  (("conda_prefix = abspath\\(sys.prefix\\)")
 854                   (format #f "conda_prefix = abspath(\"~a\")" out)))
 855                (substitute* "conda/base/context.py"
 856                  (("os.chdir\\(sys.prefix\\)")
 857                   (format #f "os.chdir(\"~a\")" out))
 858                  (("sys.prefix, '.condarc'")
 859                   (format #f "\"~a\", '.condarc'" out))
 860                  (("return abspath\\(sys.prefix\\)")
 861                   (format #f "return abspath(\"~a\")" out))
 862                  (("os.path.join\\(sys.prefix, bin_dir, exe\\)")
 863                   (format #f "\"~a/bin/conda\"" out))
 864                  (("'CONDA_EXE', sys.executable")
 865                   (format #f "'CONDA_EXE', \"~a/bin/conda\"" out))))
 866              #t))
 867          (add-before 'build 'create-version-file
 868            (lambda _
 869              (with-output-to-file "conda/.version"
 870                (lambda () (display ,version)))
 871              #t))
 872          (replace 'check
 873            (lambda _
 874              (setenv "HOME" "/tmp")
 875              (invoke "py.test" "-vv"
 876                      "-k"
 877                      (string-append
 878                       "not integration"
 879                       ;; This one reports a newer version of conda than
 880                       ;; expected.
 881                       " and not test_auto_update_conda"
 882                       ;; This fails because the output directory is not a
 883                       ;; Conda environment.
 884                       " and not test_list"
 885                       ;; This fails because we patched the default root
 886                       ;; prefix.
 887                       " and not test_default_target_is_root_prefix"
 888                       ;; TODO: I don't understand what this failure means
 889                       " and not test_PrefixData_return_value_contract"
 890                       ;; TODO: same here
 891                       " and not test_install_1"
 892                       ;; Not sure if this is really wrong.  This fails because
 893                       ;; /gnu/store/...python-conda-4.8.3/bin/python
 894                       ;; is not /gnu/store/...python-wrapper-3.8.2/bin/python
 895                       " and not test_make_entry_point"))))
 896          (add-after 'install 'init
 897            ;; This writes a whole bunch of shell initialization files to the
 898            ;; prefix directory.  Many features of conda can only be used after
 899            ;; running "conda init".
 900            (lambda* (#:key inputs outputs #:allow-other-keys)
 901              (add-installed-pythonpath inputs outputs)
 902              (setenv "HOME" "/tmp")
 903
 904              ;; "conda init" insists on using sudo, because it is hell-bent on
 905              ;; modifying system files.
 906              (mkdir-p "/tmp/fake-sudo")
 907              (with-output-to-file "/tmp/fake-sudo/sudo"
 908                (lambda () (format #t "#!~/bin/sh~%exec $@" (which "sh"))))
 909              (chmod "/tmp/fake-sudo/sudo" #o700)
 910              (setenv "PATH" (string-append "/tmp/fake-sudo:"
 911                                            (getenv "PATH")))
 912
 913              (invoke (string-append (assoc-ref outputs "out")
 914                                     "/bin/conda")
 915                      "init"))))))
 916     (inputs
 917      `(("python-wrapper" ,python-wrapper)))
 918     (propagated-inputs
 919      `(("python-anaconda-client" ,python-anaconda-client)
 920        ("python-conda-package-handling" ,python-conda-package-handling)
 921        ("python-cytoolz" ,python-cytoolz)
 922        ("python-pycosat" ,python-pycosat)
 923        ("python-pytest" ,python-pytest)
 924        ("python-pyyaml" ,python-pyyaml)
 925        ("python-requests" ,python-requests)
 926        ("python-responses" ,python-responses)
 927        ("python-ruamel.yaml" ,python-ruamel.yaml)
 928        ("python-tqdm" ,python-tqdm)
 929        ;; XXX: This is dragged in by libarchive and is needed at runtime.
 930        ("zstd" ,zstd)))
 931     (home-page "https://github.com/conda/conda")
 932     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 933     (description
 934      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 935 is the package manager used by Anaconda installations, but it may be used for
 936 other systems as well.  Conda makes environments first-class citizens, making
 937 it easy to create independent environments even for C libraries.  Conda is
 938 written entirely in Python.")
 939     (license license:bsd-3)))
 940
 941 (define-public python-conda
 942   (deprecated-package "python-conda" conda))
 943
 944 (define-public gwl
 945   (package
 946     (name "gwl")
 947     (version "0.2.1")
 948     (source (origin
 949               (method url-fetch)
 950               (uri (string-append "mirror://gnu/gwl/gwl-" version ".tar.gz"))
 951               (sha256
 952                (base32
 953                 "1ji5jvzni8aml9fmimlr11g3k8isrnlvnbzhmwgdjh72hils0alc"))))
 954     (build-system gnu-build-system)
 955     (arguments
 956      `(#:phases
 957        (modify-phases %standard-phases
 958          (add-before 'build 'fix-tests
 959            (lambda _
 960              ;; Avoid cross-device link.
 961              (substitute* "tests/cache.scm"
 962                (("/tmp/gwl-test-input-XXXXXX")
 963                 (string-append (getcwd) "/gwl-test-input-XXXXXX")))
 964              #t)))))
 965     (native-inputs
 966      `(("autoconf" ,autoconf)
 967        ("automake" ,automake)
 968        ("pkg-config" ,pkg-config)
 969        ("texinfo" ,texinfo)
 970        ("graphviz" ,graphviz)))
 971     (inputs
 972      `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
 973     (propagated-inputs
 974      `(("guix" ,guix)
 975        ("guile-commonmark" ,guile-commonmark)
 976        ("guile-gcrypt" ,guile-gcrypt)
 977        ("guile-pfds" ,guile-pfds)
 978        ("guile-syntax-highlight" ,guile-syntax-highlight)
 979        ("guile-wisp" ,guile-wisp)))
 980     (home-page "https://workflows.guix.info")
 981     (synopsis "Workflow management extension for GNU Guix")
 982     (description "The @dfn{Guix Workflow Language} (GWL) provides an
 983 extension to GNU Guix's declarative language for package management to
 984 automate the execution of programs in scientific workflows.  The GWL
 985 can use process engines to integrate with various computing
 986 environments.")
 987     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 988     ;; the web interface modules in gwl/ are licensed AGPL3+,
 989     ;; and the fonts included in this package are licensed OFL1.1.
 990     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 991
 992 (define-public guix-build-coordinator
 993   (let ((commit "d38698d85174b4594e6dc2f9be50083a50786026")
 994         (revision "4"))
 995     (package
 996       (name "guix-build-coordinator")
 997       (version (git-version "0" revision commit))
 998       (source (origin
 999                 (method git-fetch)
1000                 (uri (git-reference
1001                       (url "https://git.cbaines.net/git/guix/build-coordinator")
1002                       (commit commit)))
1003                 (sha256
1004                  (base32
1005                   "1jb36p8bbhiav6nb1qpi90j03qjbvr8akn53am3xbz32ps0hf34j"))
1006                 (file-name (string-append name "-" version "-checkout"))))
1007       (build-system gnu-build-system)
1008       (arguments
1009        `(#:modules (((guix build guile-build-system)
1010                      #:select (target-guile-effective-version))
1011                     ,@%gnu-build-system-modules)
1012          #:imported-modules ((guix build guile-build-system)
1013                              ,@%gnu-build-system-modules)
1014          #:phases
1015          (modify-phases %standard-phases
1016            (add-before 'build 'set-GUILE_AUTO_COMPILE
1017              (lambda _
1018                ;; To avoid warnings relating to 'guild'.
1019                (setenv "GUILE_AUTO_COMPILE" "0")
1020                #t))
1021            (add-after 'install 'wrap-executable
1022              (lambda* (#:key inputs outputs #:allow-other-keys)
1023                (let* ((out (assoc-ref outputs "out"))
1024                       (bin (string-append out "/bin"))
1025                       (guile (assoc-ref inputs "guile"))
1026                       (version (target-guile-effective-version))
1027                       (scm (string-append out "/share/guile/site/" version))
1028                       (go  (string-append out "/lib/guile/" version "/site-ccache")))
1029                  (for-each
1030                   (lambda (file)
1031                     (simple-format (current-error-port) "wrapping: ~A\n" file)
1032                     (wrap-program file
1033                       `("PATH" ":" prefix
1034                         (,bin
1035                          ;; Support building without sqitch as an input, as it
1036                          ;; can't be cross-compiled yet
1037                          ,@(or (and=> (assoc-ref inputs "sqitch")
1038                                       list)
1039                                '())))
1040                       `("GUILE_LOAD_PATH" ":" prefix
1041                         (,scm ,(getenv "GUILE_LOAD_PATH")))
1042                       `("GUILE_LOAD_COMPILED_PATH" ":" prefix
1043                         (,go ,(getenv "GUILE_LOAD_COMPILED_PATH")))))
1044                   (find-files bin)))
1045                #t))
1046            (delete 'strip))))             ; As the .go files aren't compatible
1047       (native-inputs
1048        `(("pkg-config" ,pkg-config)
1049          ("autoconf" ,autoconf)
1050          ("automake" ,automake)
1051          ("gnutls" ,gnutls)
1052
1053          ;; Guile libraries are needed here for cross-compilation.
1054          ("guile-json" ,guile-json-3)
1055          ("guile-gcrypt" ,guile-gcrypt)
1056          ("guix" ,guix)
1057          ("guile-prometheus" ,guile-prometheus)
1058          ("guile-fibers" ,guile-fibers)
1059          ("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
1060       (inputs
1061        `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))
1062          ("sqlite" ,sqlite)
1063          ("sqitch" ,sqitch)))
1064       (propagated-inputs
1065        `(("guile-fibers" ,guile-fibers)
1066          ("guile-prometheus" ,guile-prometheus)
1067          ("guile-gcrypt" ,guile-gcrypt)
1068          ("guile-json" ,guile-json-4)
1069          ("guile-lzlib" ,guile-lzlib)
1070          ("guile-zlib" ,guile-zlib)
1071          ("guile-sqlite3" ,guile-sqlite3)
1072          ("guix" ,guix)
1073          ("gnutls" ,gnutls)))
1074       (home-page "https://git.cbaines.net/guix/build-coordinator/")
1075       (synopsis "Tool to help build derivations")
1076       (description
1077        "The Guix Build Coordinator helps with performing lots of builds across
1078 potentially many machines, and with doing something with the results and
1079 outputs of those builds.")
1080       (license license:gpl3+))))
1081
1082 (define-public guix-jupyter
1083   (package
1084     (name "guix-jupyter")
1085     (version "0.1.0")
1086     (home-page "https://gitlab.inria.fr/guix-hpc/guix-kernel")
1087     (source (origin
1088               (method git-fetch)
1089               (uri (git-reference (url home-page)
1090                                   (commit (string-append "v" version))))
1091               (sha256
1092                (base32
1093                 "01z7jjkc7r7lj6637rcgpz40v8xqqyfp6871h94yvcnwm7zy9h1n"))
1094               (modules '((guix build utils)))
1095               (snippet
1096                '(begin
1097                   ;; Allow builds with Guile 3.0.
1098                   (substitute* "configure.ac"
1099                     (("^GUILE_PKG.*")
1100                      "GUILE_PKG([3.0 2.2])\n"))
1101
1102                   ;; Avoid name clash and build failure now that
1103                   ;; 'define-json-mapping' is also provided by Guile-JSON, as
1104                   ;; of version 4.3.
1105                   (substitute* (find-files "." "\\.scm$")
1106                     (("define-json-mapping")
1107                      "define-json-mapping*")
1108                     (("<=>")
1109                      "<->"))
1110                   #t))
1111               (file-name (string-append "guix-jupyter-" version "-checkout"))))
1112     (build-system gnu-build-system)
1113     (arguments
1114      `(#:modules ((srfi srfi-26)
1115                   (ice-9 match)
1116                   (ice-9 popen)
1117                   (ice-9 rdelim)
1118                   (guix build utils)
1119                   (guix build gnu-build-system))
1120        #:phases
1121        (modify-phases %standard-phases
1122          (add-after 'install 'sed-kernel-json
1123            (lambda* (#:key inputs outputs #:allow-other-keys)
1124              (let* ((out   (assoc-ref outputs "out"))
1125                     (guix  (assoc-ref inputs  "guix"))
1126                     (guile (assoc-ref inputs  "guile"))
1127                     (json  (assoc-ref inputs  "guile-json"))
1128                     (git   (assoc-ref inputs  "guile-git"))
1129                     (bs    (assoc-ref inputs  "guile-bytestructures"))
1130                     (s-zmq (assoc-ref inputs  "guile-simple-zmq"))
1131                     (gcrypt (assoc-ref inputs  "guile-gcrypt"))
1132                     (deps  (list out s-zmq guix json git bs gcrypt))
1133                     (effective
1134                      (read-line
1135                       (open-pipe* OPEN_READ
1136                                   (string-append guile "/bin/guile")
1137                                   "-c" "(display (effective-version))")))
1138                     (path (map (cut string-append "-L\", \"" <>
1139                                     "/share/guile/site/"
1140                                     effective)
1141                                deps))
1142                     (gopath (map (cut string-append "-C\", \"" <>
1143                                       "/lib/guile/" effective
1144                                       "/site-ccache")
1145                                  deps))
1146                     (kernel-dir (string-append out "/share/jupyter/kernels/guix/")))
1147                (substitute* (string-append kernel-dir "kernel.json")
1148                  (("-s")
1149                   (string-join
1150                    (list (string-join path "\",\n\t\t\"")
1151                          (string-join gopath "\",\n\t\t\"")
1152                          "-s")
1153                    "\",\n\t\t\""))
1154                  (("guix-jupyter-kernel.scm")
1155                   (string-append out "/share/guile/site/3.0/"
1156                                  "guix-jupyter-kernel.scm")))
1157                #t))))))
1158     (native-inputs
1159      `(("autoconf" ,autoconf)
1160        ("automake" ,automake)
1161        ("pkg-config" ,pkg-config)
1162
1163        ;; For testing.
1164        ("jupyter" ,jupyter)
1165        ("python-ipython" ,python-ipython)
1166        ("python-ipykernel" ,python-ipykernel)))
1167     (inputs
1168      `(("guix" ,guix)
1169        ("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
1170     (propagated-inputs
1171      `(("guile-json" ,guile-json-4)
1172        ("guile-simple-zmq" ,guile-simple-zmq)
1173        ("guile-gcrypt" ,guile-gcrypt)))
1174     (synopsis "Guix kernel for Jupyter")
1175     (description
1176      "Guix-Jupyter is a Jupyter kernel.  It allows you to annotate notebooks
1177 with information about their software dependencies, such that code is executed
1178 in the right software environment.  Guix-Jupyter spawns the actual kernels
1179 such as @code{python-ipykernel} on behalf of the notebook user and runs them
1180 in an isolated environment, in separate namespaces.")
1181     (license license:gpl3+)))
1182
1183 (define-public gcab
1184   (package
1185     (name "gcab")
1186     (version "1.4")
1187     (source (origin
1188               (method url-fetch)
1189               (uri (string-append "mirror://gnome/sources/gcab/"
1190                                   version "/gcab-" version ".tar.xz"))
1191               (sha256
1192                (base32
1193                 "13q43iqld4l50yra45lhvkd376pn6qpk7rkx374zn8y9wsdzm9b7"))))
1194     (build-system meson-build-system)
1195     (native-inputs
1196      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
1197        ("intltool" ,intltool)
1198        ("pkg-config" ,pkg-config)
1199        ("vala" ,vala)))
1200     (inputs
1201      `(("glib" ,glib)
1202        ("zlib" ,zlib)))
1203     (arguments
1204      `(#:configure-flags
1205        ;; XXX This ‘documentation’ is for developers, and fails informatively:
1206        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
1207        (list "-Ddocs=false"
1208              "-Dintrospection=false")))
1209     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
1210     (synopsis "Microsoft Cabinet file manipulation library")
1211     (description
1212      "The libgcab library provides GObject functions to read, write, and modify
1213 Microsoft cabinet (.@dfn{CAB}) files.")
1214     (license (list license:gpl2+        ; tests/testsuite.at
1215                    license:lgpl2.1+)))) ; the rest
1216
1217 (define-public msitools
1218   (package
1219     (name "msitools")
1220     (version "0.100")
1221     (source (origin
1222               (method url-fetch)
1223               (uri (string-append "mirror://gnome/sources/msitools/"
1224                                   version "/msitools-" version ".tar.xz"))
1225               (sha256
1226                (base32
1227                 "1skq17qr2ic4qr3779j49byfm8rncwbsq9rj1a33ncn2m7isdwdv"))))
1228     (build-system gnu-build-system)
1229     (native-inputs
1230      `(("bison" ,bison)
1231        ("pkg-config" ,pkg-config)))
1232     (inputs
1233      `(("gcab" ,gcab)
1234        ("glib" ,glib)
1235        ("libgsf" ,libgsf)
1236        ("libxml2" ,libxml2)
1237        ("uuid" ,util-linux "lib")))
1238     (home-page "https://wiki.gnome.org/msitools")
1239     (synopsis "Windows Installer file manipulation tool")
1240     (description
1241      "msitools is a collection of command-line tools to inspect, extract, build,
1242 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
1243 for packaging and deployment of cross-compiled Windows applications.")
1244     (license license:lgpl2.1+)))
1245
1246 (define-public libostree
1247   (package
1248     (name "libostree")
1249     (version "2020.7")
1250     (source
1251      (origin
1252        (method url-fetch)
1253        (uri (string-append
1254              "https://github.com/ostreedev/ostree/releases/download/v"
1255              (version-major+minor version) "/libostree-" version ".tar.xz"))
1256        (sha256
1257         (base32 "0clriq2ypz1fycd6mpjyrhzid44svzpzw0amnank593h69b216ax"))))
1258     (build-system gnu-build-system)
1259     (arguments
1260      '(#:phases
1261        (modify-phases %standard-phases
1262          (add-before 'check 'pre-check
1263            (lambda _
1264              ;; Don't try to use the non-existing '/var/tmp' as test
1265              ;; directory.
1266              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
1267              #t)))
1268        ;; XXX: fails with:
1269        ;;     tap-driver.sh: missing test plan
1270        ;;     tap-driver.sh: internal error getting exit status
1271        ;;     tap-driver.sh: fatal: I/O or internal error
1272        #:tests? #f))
1273     (native-inputs
1274      `(("attr" ,attr)                   ; for tests
1275        ("bison" ,bison)
1276        ("glib:bin" ,glib "bin")         ; for 'glib-mkenums'
1277        ("gobject-introspection" ,gobject-introspection)
1278        ("pkg-config" ,pkg-config)
1279        ("xsltproc" ,libxslt)))
1280     (inputs
1281      `(("avahi" ,avahi)
1282        ("docbook-xml" ,docbook-xml-4.2)
1283        ("docbook-xsl" ,docbook-xsl)
1284        ("e2fsprogs" ,e2fsprogs)
1285        ("fuse" ,fuse)
1286        ("glib" ,glib)
1287        ("gpgme" ,gpgme)
1288        ("libarchive" ,libarchive)
1289        ("libsoup" ,libsoup)
1290        ("util-linux" ,util-linux)))
1291     (home-page "https://ostree.readthedocs.io/en/latest/")
1292     (synopsis "Operating system and container binary deployment and upgrades")
1293     (description
1294      "@code{libostree} is both a shared library and suite of command line
1295 tools that combines a \"git-like\" model for committing and downloading
1296 bootable file system trees, along with a layer for deploying them and managing
1297 the boot loader configuration.")
1298     (license license:lgpl2.0+)))
1299
1300 (define-public flatpak
1301   (package
1302    (name "flatpak")
1303    (version "1.8.2")
1304    (source
1305     (origin
1306      (method url-fetch)
1307      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1308                          version "/flatpak-" version ".tar.xz"))
1309      (sha256
1310       (base32 "1c45a0k7wx685n5b3ihv7dk0mm2kmwbw7cx8w5g2la62yxfn49kr"))))
1311
1312    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1313    ;; find the TLS backend in glib-networking.
1314    (build-system glib-or-gtk-build-system)
1315
1316    (arguments
1317     '(#:configure-flags
1318       (list
1319        "--enable-documentation=no" ;; FIXME
1320        "--enable-system-helper=no"
1321        "--localstatedir=/var"
1322        (string-append "--with-system-bubblewrap="
1323                       (assoc-ref %build-inputs "bubblewrap")
1324                       "/bin/bwrap")
1325        (string-append "--with-system-dbus-proxy="
1326                       (assoc-ref %build-inputs "xdg-dbus-proxy")
1327                       "/bin/xdg-dbus-proxy"))
1328       #:phases
1329       (modify-phases %standard-phases
1330         (add-after 'unpack 'fix-tests
1331           (lambda* (#:key inputs #:allow-other-keys)
1332             (copy-recursively
1333              (string-append (assoc-ref inputs "glibc-utf8-locales")
1334                             "/lib/locale/") "/tmp/locale")
1335             (for-each make-file-writable (find-files "/tmp"))
1336             (substitute* "tests/make-test-runtime.sh"
1337               (("cp `which.*") "echo guix\n")
1338               (("cp -r /usr/lib/locale/C\\.\\*")
1339                (string-append "mkdir ${DIR}/usr/lib/locale/en_US; \
1340 cp -r /tmp/locale/*/en_US.*")))
1341             (substitute* "tests/libtest.sh"
1342               (("/bin/kill") (which "kill"))
1343               (("/usr/bin/python3") (which "python3")))
1344             #t))
1345         ;; Many tests fail for unknown reasons, so we just run a few basic
1346         ;; tests.
1347         (replace 'check
1348           (lambda _
1349             (setenv "HOME" "/tmp")
1350             (invoke "make" "check"
1351                     "TESTS=tests/test-basic.sh tests/test-config.sh testcommon"))))))
1352     (native-inputs
1353     `(("bison" ,bison)
1354       ("dbus" ,dbus) ; for dbus-daemon
1355       ("gettext" ,gettext-minimal)
1356       ("glib:bin" ,glib "bin")          ; for glib-mkenums + gdbus-codegen
1357       ("glibc-utf8-locales" ,glibc-utf8-locales)
1358       ("gobject-introspection" ,gobject-introspection)
1359       ("libcap" ,libcap)
1360       ("pkg-config" ,pkg-config)
1361       ("python" ,python)
1362       ("python-pyparsing" ,python-pyparsing)
1363       ("socat" ,socat)
1364       ("which" ,which)))
1365    (propagated-inputs `(("glib-networking" ,glib-networking)
1366                         ("gnupg" ,gnupg)
1367                         ("gsettings-desktop-schemas"
1368                          ,gsettings-desktop-schemas)))
1369    (inputs
1370     `(("appstream-glib" ,appstream-glib)
1371       ("bubblewrap" ,bubblewrap)
1372       ("dconf" ,dconf)
1373       ("fuse" ,fuse)
1374       ("gdk-pixbuf" ,gdk-pixbuf)
1375       ("gpgme" ,gpgme)
1376       ("json-glib" ,json-glib)
1377       ("libarchive" ,libarchive)
1378       ("libostree" ,libostree)
1379       ("libseccomp" ,libseccomp)
1380       ("libsoup" ,libsoup)
1381       ("libxau" ,libxau)
1382       ("libxml2" ,libxml2)
1383       ("util-linux" ,util-linux)
1384       ("xdg-dbus-proxy" ,xdg-dbus-proxy)))
1385    (home-page "https://flatpak.org")
1386    (synopsis "System for building, distributing, and running sandboxed desktop
1387 applications")
1388    (description "Flatpak is a system for building, distributing, and running
1389 sandboxed desktop applications on GNU/Linux.")
1390    (license license:lgpl2.1+)))
1391
1392 (define-public akku
1393   (package
1394     (name "akku")
1395     (version "1.0.1")
1396     (source (origin
1397               (method git-fetch)
1398               (uri (git-reference
1399                     (url "https://gitlab.com/akkuscm/akku.git")
1400                     (commit (string-append "v" version))))
1401               (file-name (git-file-name name version))
1402               (sha256 (base32 "1dm32ws3nshnnscd7k75zswxxs1pp25y2q4k8j5ms241hz47by3c"))))
1403     (build-system gnu-build-system)
1404     (arguments
1405      '(#:phases (modify-phases %standard-phases
1406                   (replace 'bootstrap
1407                     (lambda* (#:key outputs #:allow-other-keys)
1408                       (for-each patch-shebang
1409                                 '("bootstrap"
1410                                   ".akku/env"))
1411                       (let* ((home "/tmp")
1412                              (datadir (string-append home "/.local/share/akku/")))
1413                         (mkdir-p datadir)
1414                         (invoke "touch" (string-append datadir "index.db"))
1415                         (setenv "HOME" home))
1416                       (invoke "./bootstrap")
1417                       #t))
1418                   (add-after 'install 'wrap-executables
1419                     (lambda* (#:key outputs inputs #:allow-other-keys)
1420                       (let ((out (assoc-ref outputs "out"))
1421                             (curl (assoc-ref inputs "curl")))
1422                         (wrap-program (string-append out "/bin/akku")
1423                           `("LD_LIBRARY_PATH" ":" prefix (,(string-append curl "/lib"))))
1424                         #t))))))
1425     (native-inputs
1426      `(("which" ,which)
1427        ("autoconf" ,autoconf)
1428        ("automake" ,automake)
1429        ("pkg-config" ,pkg-config)))
1430     (inputs
1431      `(("guile" ,guile-3.0)
1432        ("curl" ,curl)))
1433     (home-page "https://akkuscm.org/")
1434     (synopsis "Language package manager for Scheme")
1435     (description
1436      "Akku.scm is a project-based language package manager for R6RS and R7RS Scheme.
1437 It is mainly meant for programmers who develop portable programs or libraries in Scheme,
1438 but could potentially work for end-users of those programs.  It also has a translator
1439 from R7RS, which allows most R7RS code to run on R6RS implementations.")
1440     (license license:gpl3+)))