gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017, 2020, 2021 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018, 2019 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
  14 ;;; Copyright © 2020 Mathieu Othacehe <m.othacehe@gmail.com>
  15 ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
  16 ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org>
  17 ;;; Copyright © 2020 Jesse Gibbons <jgibbons2357+guix@gmail.com>
  18 ;;; Copyright © 2020 Martin Becze <mjbecze@riseup.net>
  19 ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
  20 ;;;
  21 ;;; This file is part of GNU Guix.
  22 ;;;
  23 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  24 ;;; under the terms of the GNU General Public License as published by
  25 ;;; the Free Software Foundation; either version 3 of the License, or (at
  26 ;;; your option) any later version.
  27 ;;;
  28 ;;; GNU Guix is distributed in the hope that it will be useful, but
  29 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  30 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  31 ;;; GNU General Public License for more details.
  32 ;;;
  33 ;;; You should have received a copy of the GNU General Public License
  34 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  35
  36 (define-module (gnu packages package-management)
  37   #:use-module (gnu packages)
  38   #:use-module (gnu packages acl)
  39   #:use-module (gnu packages attr)
  40   #:use-module (gnu packages avahi)
  41   #:use-module (gnu packages autotools)
  42   #:use-module (gnu packages backup)
  43   #:use-module (gnu packages base)
  44   #:use-module (gnu packages bash)
  45   #:use-module (gnu packages bdw-gc)
  46   #:use-module (gnu packages bison)
  47   #:use-module (gnu packages boost)
  48   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  49   #:use-module (gnu packages check)
  50   #:use-module (gnu packages compression)
  51   #:use-module (gnu packages cpio)
  52   #:use-module (gnu packages crypto)
  53   #:use-module (gnu packages curl)
  54   #:use-module (gnu packages databases)
  55   #:use-module (gnu packages dbm)
  56   #:use-module (gnu packages docbook)
  57   #:use-module (gnu packages file)
  58   #:use-module (gnu packages gettext)
  59   #:use-module (gnu packages glib)
  60   #:use-module (gnu packages gnome)
  61   #:use-module (gnu packages gnupg)
  62   #:use-module (gnu packages graphviz)
  63   #:use-module (gnu packages gtk)
  64   #:use-module (gnu packages guile)
  65   #:use-module (gnu packages guile-xyz)
  66   #:use-module (gnu packages hurd)
  67   #:use-module (gnu packages libedit)
  68   #:use-module (gnu packages linux)
  69   #:use-module (gnu packages lisp)
  70   #:use-module (gnu packages man)
  71   #:use-module (gnu packages nettle)
  72   #:use-module (gnu packages networking)
  73   #:use-module (gnu packages nss)
  74   #:use-module (gnu packages patchutils)
  75   #:use-module (gnu packages perl)
  76   #:use-module (gnu packages perl-check)
  77   #:use-module (gnu packages pkg-config)
  78   #:use-module (gnu packages popt)
  79   #:use-module (gnu packages python)
  80   #:use-module (gnu packages python-web)
  81   #:use-module (gnu packages python-xyz)
  82   #:use-module (gnu packages serialization)
  83   #:use-module (gnu packages sqlite)
  84   #:use-module (gnu packages ssh)
  85   #:use-module (gnu packages texinfo)
  86   #:use-module (gnu packages time)
  87   #:use-module (gnu packages tls)
  88   #:use-module (gnu packages vim)
  89   #:use-module (gnu packages virtualization)
  90   #:use-module (gnu packages web)
  91   #:use-module (gnu packages xml)
  92   #:use-module (gnu packages xorg)
  93   #:use-module (guix build-system glib-or-gtk)
  94   #:use-module (guix build-system gnu)
  95   #:use-module (guix build-system meson)
  96   #:use-module (guix build-system python)
  97   #:use-module (guix download)
  98   #:use-module (guix gexp)
  99   #:use-module (guix git-download)
 100   #:use-module ((guix licenses) #:prefix license:)
 101   #:use-module (guix packages)
 102   #:use-module (guix utils)
 103   #:use-module (ice-9 match)
 104   #:use-module (srfi srfi-1))
 105
 106 (define (boot-guile-uri arch)
 107   "Return the URI for the bootstrap Guile tarball for ARCH."
 108   (cond ((string=? "armhf" arch)
 109          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 110                         arch "-linux"
 111                         "/20150101/guile-2.0.11.tar.xz"))
 112         ((string=? "aarch64" arch)
 113          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 114                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 115         (else
 116          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 117                         arch "-linux"
 118                         "/20131110/guile-2.0.9.tar.xz"))))
 119
 120 ;; NOTE: The commit IDs used here form a linked list threaded through the git
 121 ;; history. In a phenomenon known as boot-stripping, not only the head of this
 122 ;; list is used, but also a few older versions, when a guix from this package is
 123 ;; used to build something also depending on guix.
 124 ;;
 125 ;; Therefore, if, by accident, you set this package to a non-existent commit ID,
 126 ;; it is insufficient to simply correct it with the latest commit.
 127 ;; Instead, please push one commit that rolls back Guix to before the mistake,
 128 ;; and then another that points to the first one. That way, the faulty commit
 129 ;; won't appear on the linked list.
 130 (define-public guix
 131   ;; Latest version of Guix, which may or may not correspond to a release.
 132   ;; Note: the 'update-guix-package.scm' script expects this definition to
 133   ;; start precisely like this.
 134   (let ((version "1.3.0")
 135         (commit "50dfbbf8ef52111067071c788e19fc21d54c40d6")
 136         (revision 3))
 137     (package
 138       (name "guix")
 139
 140       (version (if (zero? revision)
 141                    version
 142                    (string-append version "-"
 143                                   (number->string revision)
 144                                   "." (string-take commit 7))))
 145       (source (origin
 146                 (method git-fetch)
 147                 (uri (git-reference
 148                       (url "https://git.savannah.gnu.org/git/guix.git")
 149                       (commit commit)))
 150                 (sha256
 151                  (base32
 152                   "128608qyza3p769h7awp183c2mi9gdx2b1xidvmjilfkphlg1lyi"))
 153                 (file-name (string-append "guix-" version "-checkout"))))
 154       (build-system gnu-build-system)
 155       (arguments
 156        `(#:configure-flags (list
 157
 158                             ;; Provide channel metadata for 'guix describe'.
 159                             ;; Don't pass '--with-channel-url' and
 160                             ;; '--with-channel-introduction' and instead use
 161                             ;; the defaults.
 162                             ,(string-append "--with-channel-commit=" commit)
 163
 164                             "--localstatedir=/var"
 165                             "--sysconfdir=/etc"
 166                             (string-append "--with-bash-completion-dir="
 167                                            (assoc-ref %outputs "out")
 168                                            "/etc/bash_completion.d")
 169
 170                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 171                             ;; we don't keep a reference to Graphviz, whose
 172                             ;; closure is pretty big (too big for the Guix
 173                             ;; system installation image.)
 174                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 175
 176                             ;; To avoid problems with the length of shebangs,
 177                             ;; choose a fixed-width and short directory name
 178                             ;; for tests.
 179                             "ac_cv_guix_test_root=/tmp/guix-tests"
 180                             ,@(if (hurd-target?) '("--with-courage") '()))
 181          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 182
 183          #:modules ((guix build gnu-build-system)
 184                     (guix build utils)
 185                     (srfi srfi-26)
 186                     (ice-9 popen)
 187                     (ice-9 rdelim))
 188
 189          #:phases (modify-phases %standard-phases
 190                     (replace 'bootstrap
 191                       (lambda _
 192                         ;; Make sure 'msgmerge' can modify the PO files.
 193                         (for-each (lambda (po)
 194                                     (chmod po #o666))
 195                                   (find-files "." "\\.po$"))
 196
 197                         (patch-shebang "build-aux/git-version-gen")
 198
 199                         (call-with-output-file ".tarball-version"
 200                           (lambda (port)
 201                             (display ,version port)))
 202
 203                         ;; Install SysV init files to $(prefix)/etc rather
 204                         ;; than to /etc.
 205                         (substitute* "nix/local.mk"
 206                           (("^sysvinitservicedir = .*$")
 207                            (string-append "sysvinitservicedir = \
 208 $(prefix)/etc/init.d\n")))
 209
 210                         ;; Install OpenRC init files to $(prefix)/etc rather
 211                         ;; than to /etc.
 212                         (substitute* "nix/local.mk"
 213                           (("^openrcservicedir = .*$")
 214                            (string-append "openrcservicedir = \
 215 $(prefix)/etc/openrc\n")))
 216
 217                         (invoke "sh" "bootstrap")))
 218                     (add-before 'build 'use-host-compressors
 219                       (lambda* (#:key inputs target #:allow-other-keys)
 220                         (when target
 221                           ;; Use host compressors.
 222                           (let ((bzip2 (assoc-ref inputs "bzip2"))
 223                                 (gzip (assoc-ref inputs "gzip"))
 224                                 (xz (assoc-ref inputs "xz")))
 225                             (substitute* "guix/config.scm"
 226                               (("\"[^\"]*/bin/bzip2")
 227                                (string-append "\"" bzip2 "/bin/bzip2"))
 228                               (("\"[^\"]*/bin/gzip") gzip
 229                                (string-append "\"" gzip "/bin/gzip"))
 230                               (("\"[^\"]*/bin//xz")
 231                                (string-append "\"" xz "/bin/xz")))))
 232                         #t))
 233                     (add-before 'check 'copy-bootstrap-guile
 234                       (lambda* (#:key system target inputs #:allow-other-keys)
 235                         ;; Copy the bootstrap guile tarball in the store
 236                         ;; used by the test suite.
 237                         (define (intern file recursive?)
 238                           ;; Note: don't use 'guix download' here because we
 239                           ;; need to set the 'recursive?' argument.
 240                           (define base
 241                             (strip-store-file-name file))
 242
 243                           (define code
 244                             `(begin
 245                                (use-modules (guix))
 246                                (with-store store
 247                                  (let* ((item (add-to-store store ,base
 248                                                             ,recursive?
 249                                                             "sha256" ,file))
 250                                         (root (string-append "/tmp/gc-root-"
 251                                                              (basename item))))
 252                                    ;; Register a root so that the GC tests
 253                                    ;; don't delete those.
 254                                    (symlink item root)
 255                                    (add-indirect-root store root)))))
 256
 257                           (invoke "./test-env" "guile" "-c"
 258                                   (object->string code)))
 259
 260                         (unless target
 261                           (intern (assoc-ref inputs "boot-guile") #f)
 262
 263                           ;; On x86_64 some tests need the i686 Guile.
 264                           (when (and (not target)
 265                                      (string=? system "x86_64-linux"))
 266                             (intern (assoc-ref inputs "boot-guile/i686") #f))
 267
 268                           ;; Copy the bootstrap executables.
 269                           (for-each (lambda (input)
 270                                       (intern (assoc-ref inputs input) #t))
 271                                     '("bootstrap/bash" "bootstrap/mkdir"
 272                                       "bootstrap/tar" "bootstrap/xz")))
 273                         #t))
 274                     (add-after 'unpack 'disable-failing-tests
 275                       ;; XXX FIXME: These tests fail within the build container.
 276                       (lambda _
 277                         (substitute* "tests/syscalls.scm"
 278                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 279                            (string-append "(test-skip 1)\n" all)))
 280                         (substitute* "tests/containers.scm"
 281                           (("^\\(test-(assert|equal)" all)
 282                            (string-append "(test-skip 1)\n" all)))
 283                         (when (file-exists? "tests/guix-environment-container.sh")
 284                           (substitute* "tests/guix-environment-container.sh"
 285                             (("guix environment --version")
 286                              "exit 77\n")))
 287                         #t))
 288                     (add-before 'check 'set-SHELL
 289                       (lambda _
 290                         ;; 'guix environment' tests rely on 'SHELL' having a
 291                         ;; correct value, so set it.
 292                         (setenv "SHELL" (which "sh"))
 293                         #t))
 294                     (add-after 'install 'wrap-program
 295                       (lambda* (#:key inputs native-inputs outputs target
 296                                 #:allow-other-keys)
 297                         ;; Make sure the 'guix' command finds GnuTLS,
 298                         ;; Guile-JSON, and Guile-Git automatically.
 299                         (let* ((out    (assoc-ref outputs "out"))
 300                                (guile  (assoc-ref (or native-inputs inputs)
 301                                                   "guile"))
 302                                (avahi  (assoc-ref inputs "guile-avahi"))
 303                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 304                                (guile-lib   (assoc-ref inputs "guile-lib"))
 305                                (json   (assoc-ref inputs "guile-json"))
 306                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 307                                (zlib   (assoc-ref inputs "guile-zlib"))
 308                                (lzlib  (assoc-ref inputs "guile-lzlib"))
 309                                (zstd   (assoc-ref inputs "guile-zstd"))
 310                                (git    (assoc-ref inputs "guile-git"))
 311                                (bs     (assoc-ref inputs
 312                                                   "guile-bytestructures"))
 313                                (ssh    (assoc-ref inputs "guile-ssh"))
 314                                (gnutls (assoc-ref inputs "gnutls"))
 315                                (disarchive (assoc-ref inputs "disarchive"))
 316                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 317                                (deps   (list gcrypt json sqlite gnutls git
 318                                              bs ssh zlib lzlib zstd guile-lib
 319                                              disarchive))
 320                                (deps*  (if avahi (cons avahi deps) deps))
 321                                (effective
 322                                 (read-line
 323                                  (open-pipe* OPEN_READ
 324                                              (string-append guile "/bin/guile")
 325                                              "-c" "(display (effective-version))")))
 326                                (path   (map (cut string-append <>
 327                                                  "/share/guile/site/"
 328                                                  effective)
 329                                             (delete #f deps*)))
 330                                (gopath (map (cut string-append <>
 331                                                  "/lib/guile/" effective
 332                                                  "/site-ccache")
 333                                             (delete #f deps*)))
 334                                (locpath (string-append locales "/lib/locale")))
 335
 336                           ;; Modify 'guix' directly instead of using
 337                           ;; 'wrap-program'.  This avoids the indirection
 338                           ;; through Bash, which in turn avoids getting Bash's
 339                           ;; own locale warnings.
 340                           (substitute* (string-append out "/bin/guix")
 341                             (("!#")
 342                              (string-append
 343                               "!#\n\n"
 344                               (object->string
 345                                `(set! %load-path (append ',path %load-path)))
 346                               "\n"
 347                               (object->string
 348                                `(set! %load-compiled-path
 349                                   (append ',gopath %load-compiled-path)))
 350                               "\n"
 351                               (object->string
 352                                `(let ((path (getenv "GUIX_LOCPATH")))
 353                                   (setenv "GUIX_LOCPATH"
 354                                           (if path
 355                                               (string-append path ":" ,locpath)
 356                                               ,locpath))))
 357                               "\n\n"))))))
 358
 359                     ;; The 'guix' executable has 'OUT/libexec/guix/guile' as
 360                     ;; its shebang; that should remain unchanged, thus remove
 361                     ;; the 'patch-shebangs' phase, which would otherwise
 362                     ;; change it to 'GUILE/bin/guile'.
 363                     (delete 'patch-shebangs))))
 364       (native-inputs `(("pkg-config" ,pkg-config)
 365
 366                        ;; Guile libraries are needed here for
 367                        ;; cross-compilation.
 368                        ("guile" ,guile-3.0-latest) ;for faster builds
 369                        ("gnutls" ,gnutls)
 370                        ,@(if (%current-target-system)
 371                              '()
 372                              `(("guile-avahi" ,guile-avahi)))
 373                        ("guile-gcrypt" ,guile-gcrypt)
 374                        ("guile-json" ,guile-json-4)
 375                        ("guile-lib" ,guile-lib)
 376                        ("guile-sqlite3" ,guile-sqlite3)
 377                        ("guile-zlib" ,guile-zlib)
 378                        ("guile-lzlib" ,guile-lzlib)
 379                        ("guile-zstd" ,guile-zstd)
 380                        ("guile-ssh" ,guile-ssh)
 381                        ("guile-git" ,guile-git)
 382
 383                        ;; XXX: Keep the development inputs here even though
 384                        ;; they're unnecessary, just so that 'guix environment
 385                        ;; guix' always contains them.
 386                        ("autoconf" ,autoconf)
 387                        ("automake" ,automake)
 388                        ("gettext" ,gettext-minimal)
 389                        ("texinfo" ,texinfo)
 390                        ("graphviz" ,graphviz)
 391                        ("help2man" ,help2man)
 392                        ("po4a" ,po4a)))
 393       (inputs
 394        `(("bzip2" ,bzip2)
 395          ("gzip" ,gzip)
 396          ("sqlite" ,sqlite)
 397          ("libgcrypt" ,libgcrypt)
 398
 399          ("guile" ,guile-3.0-latest)
 400
 401          ;; Some of the tests use "unshare" when it is available.
 402          ("util-linux" ,util-linux)
 403
 404          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 405          ;; have it here.
 406          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 407          ,@(if (and (not (%current-target-system))
 408                     (string=? (%current-system) "x86_64-linux"))
 409                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 410                '())
 411          ,@(if (%current-target-system)
 412                `(("xz" ,xz))
 413                '())
 414
 415          ;; Tests also rely on these bootstrap executables.
 416          ("bootstrap/bash" ,(bootstrap-executable "bash" (%current-system)))
 417          ("bootstrap/mkdir" ,(bootstrap-executable "mkdir" (%current-system)))
 418          ("bootstrap/tar" ,(bootstrap-executable "tar" (%current-system)))
 419          ("bootstrap/xz" ,(bootstrap-executable "xz" (%current-system)))
 420
 421          ("disarchive" ,disarchive)               ;for 'guix perform-download'
 422
 423          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 424       (propagated-inputs
 425        `(("gnutls" ,gnutls)
 426          ;; Avahi requires "glib" which doesn't cross-compile yet.
 427          ,@(if (%current-target-system)
 428                '()
 429                `(("guile-avahi" ,guile-avahi)))
 430          ("guile-gcrypt" ,guile-gcrypt)
 431          ("guile-json" ,guile-json-4)
 432          ("guile-lib" ,guile-lib)
 433          ("guile-sqlite3" ,guile-sqlite3)
 434          ("guile-ssh" ,guile-ssh)
 435          ("guile-git" ,guile-git)
 436          ("guile-zlib" ,guile-zlib)
 437          ("guile-lzlib" ,guile-lzlib)
 438          ("guile-zstd" ,guile-zstd)))
 439       (native-search-paths
 440        (list (search-path-specification
 441               (variable "GUIX_EXTENSIONS_PATH")
 442               (files '("share/guix/extensions")))
 443
 444              ;; (guix git) and (guix build download) honor this variable whose
 445              ;; name comes from OpenSSL.
 446              (search-path-specification
 447               (variable "SSL_CERT_DIR")
 448               (separator #f)                      ;single entry
 449               (files '("etc/ssl/certs")))))
 450
 451       (home-page "https://www.gnu.org/software/guix/")
 452       (synopsis "Functional package manager for installed software packages and versions")
 453       (description
 454        "GNU Guix is a functional package manager for the GNU system, and is
 455 also a distribution thereof.  It includes a virtual machine image.  Besides
 456 the usual package management features, it also supports transactional
 457 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 458 the Nix package manager.")
 459       (license license:gpl3+)
 460       (properties '((ftp-server . "alpha.gnu.org"))))))
 461
 462 (define-public guix-daemon
 463   ;; This package is for internal consumption: it allows us to quickly build
 464   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 465   ;; pull'.
 466   (package
 467     (inherit guix)
 468     (properties `((hidden? . #t)))
 469     (name "guix-daemon")
 470
 471     ;; Use a minimum set of dependencies.
 472     (native-inputs
 473      (fold alist-delete (package-native-inputs guix)
 474            '("po4a" "graphviz" "help2man")))
 475     (inputs
 476      `(("gnutls" ,gnutls)
 477        ("guile-git" ,guile-git)
 478        ("guile-json" ,guile-json-3)
 479        ("guile-gcrypt" ,guile-gcrypt)
 480        ,@(fold alist-delete (package-inputs guix)
 481                '("boot-guile" "boot-guile/i686" "util-linux"))))
 482
 483     (propagated-inputs '())
 484
 485     (arguments
 486      (substitute-keyword-arguments (package-arguments guix)
 487        ((#:configure-flags flags '())
 488         ;; Pretend we have those libraries; we don't actually need them.
 489         `(append ,flags
 490                  '("guix_cv_have_recent_guile_sqlite3=yes"
 491                    "guix_cv_have_recent_guile_ssh=yes")))
 492        ((#:tests? #f #f)
 493         #f)
 494        ((#:phases phases '%standard-phases)
 495         `(modify-phases ,phases
 496            (add-after 'unpack 'change-default-guix
 497              (lambda _
 498                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 499                ;; Here we use a questionable hack where we hard-code root's
 500                ;; current guix, which could be wrong (XXX).  Note that scripts
 501                ;; like 'guix perform-download' do not run as root so we assume
 502                ;; that they have access to /var/guix/profiles/per-user/root.
 503                (substitute* "nix/libstore/globals.cc"
 504                  (("guixProgram = (.*)nixBinDir + \"/guix\"" _ before)
 505                   (string-append "guixProgram = " before
 506                                  "/var/guix/profiles/per-user/root\
 507 /current-guix/bin/guix")))
 508                #t))
 509            (replace 'build
 510              (lambda _
 511                (invoke "make" "nix/libstore/schema.sql.hh")
 512                (invoke "make" "-j" (number->string
 513                                     (parallel-job-count))
 514                        "guix-daemon")))
 515            (delete 'copy-bootstrap-guile)
 516            (replace 'install
 517              (lambda* (#:key outputs #:allow-other-keys)
 518                (invoke "make" "install-binPROGRAMS")))
 519            (delete 'wrap-program)))))))
 520
 521 (define-public guile3.0-guix
 522   (deprecated-package "guile3.0-guix" guix))
 523
 524 (define-public guix-minimal
 525   ;; A version of Guix which is built with the minimal set of dependencies, as
 526   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 527   ;; marked as hidden.
 528   (hidden-package
 529    (package
 530      (inherit guix)
 531      (name "guix-minimal")
 532      (native-inputs
 533       (fold alist-delete
 534             (package-native-inputs guix)
 535             '("guile-ssh")))
 536      (propagated-inputs
 537       (fold alist-delete
 538             (package-propagated-inputs guix)
 539             '("guile-ssh"))))))
 540
 541 (define (source-file? file stat)
 542   "Return true if FILE is likely a source file, false if it is a typical
 543 generated file."
 544   (define (wrong-extension? file)
 545     (or (string-suffix? "~" file)
 546         (member (file-extension file)
 547                 '("o" "a" "lo" "so" "go"))))
 548
 549   (match (basename file)
 550     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 551      #f)
 552     ((? wrong-extension?)
 553      #f)
 554     (_
 555      #t)))
 556
 557 (define-public current-guix-package
 558   ;; This parameter allows callers to override the package that 'current-guix'
 559   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 560   ;; for instance because it's not running from a source code checkout.
 561   (make-parameter #f))
 562
 563 (define-public current-guix
 564   (let* ((repository-root (delay (canonicalize-path
 565                                   (string-append (current-source-directory)
 566                                                  "/../.."))))
 567          (select? (delay (or (git-predicate (force repository-root))
 568                              source-file?))))
 569     (lambda ()
 570       "Return a package representing Guix built from the current source tree.
 571 This works by adding the current source tree to the store (after filtering it
 572 out) and returning a package that uses that as its 'source'."
 573       (or (current-guix-package)
 574           (package
 575             (inherit guix)
 576             (version (string-append (package-version guix) "+"))
 577             (source (local-file (force repository-root) "guix-current"
 578                                 #:recursive? #t
 579                                 #:select? (force select?))))))))
 580
 581 \f
 582 ;;;
 583 ;;; Other tools.
 584 ;;;
 585
 586 (define-public nix
 587   (package
 588     (name "nix")
 589     (version "2.3.11")
 590     (source (origin
 591              (method url-fetch)
 592              (uri (string-append "https://nixos.org/releases/nix/nix-"
 593                                  version "/nix-" version ".tar.xz"))
 594              (sha256
 595               (base32
 596                "0a61c5d7g07iqi5hksq497y93ivr32zhnrz6c4aqp9q5afcxga49"))))
 597     (build-system gnu-build-system)
 598     (arguments
 599      `(#:configure-flags '("--sysconfdir=/etc" "--enable-gc")
 600        #:phases
 601        (modify-phases %standard-phases
 602          (replace 'install
 603            ;; Don't try & fail to create subdirectories in /etc, but keep them
 604            ;; in the output as examples.
 605            (lambda* (#:key (make-flags '()) outputs #:allow-other-keys)
 606              (let* ((out (assoc-ref outputs "out"))
 607                     (etc (string-append out "/etc")))
 608                (apply invoke "make" "install"
 609                       (string-append "sysconfdir=" etc)
 610                       (string-append "profiledir=" etc "/profile.d")
 611                       make-flags)))))))
 612     (native-inputs `(("pkg-config" ,pkg-config)))
 613     (inputs `(("boost" ,boost)
 614               ("brotli" ,brotli)
 615               ("bzip2" ,bzip2)
 616               ("curl" ,curl)
 617               ("editline" ,editline)
 618               ("libgc" ,libgc)
 619               ("libseccomp" ,libseccomp)
 620               ("libsodium" ,libsodium)
 621               ("openssl" ,openssl)
 622               ("sqlite" ,sqlite)
 623               ("xz" ,xz)))
 624     (home-page "https://nixos.org/nix/")
 625     (synopsis "The Nix package manager")
 626     (description
 627      "Nix is a purely functional package manager.  This means that it treats
 628 packages like values in purely functional programming languages such as
 629 Haskell—they are built by functions that don't have side-effects, and they
 630 never change after they have been built.  Nix stores packages in the Nix
 631 store, usually the directory /nix/store, where each package has its own unique
 632 sub-directory.")
 633     (license license:lgpl2.1+)))
 634
 635 (define-public stow
 636   (package
 637     (name "stow")
 638     (version "2.3.1")
 639     (source (origin
 640               (method url-fetch)
 641               (uri (string-append "mirror://gnu/stow/stow-"
 642                                   version ".tar.gz"))
 643               (sha256
 644                (base32
 645                 "0jrxy12ywn7smdzdnvwzjw77l6knx6jkj2rckgykg1dpf6bdkm89"))))
 646     (build-system gnu-build-system)
 647     (inputs
 648      `(("perl" ,perl)))
 649     (native-inputs
 650      `(("perl-test-simple" ,perl-test-simple)
 651        ("perl-test-output" ,perl-test-output)
 652        ("perl-capture-tiny" ,perl-capture-tiny)
 653        ("perl-io-stringy" ,perl-io-stringy)))
 654     (home-page "https://www.gnu.org/software/stow/")
 655     (synopsis "Managing installed software packages")
 656     (description
 657      "GNU Stow is a symlink manager.  It generates symlinks to directories
 658 of data and makes them appear to be merged into the same directory.  It is
 659 typically used for managing software packages installed from source, by
 660 letting you install them apart in distinct directories and then create
 661 symlinks to the files in a common directory such as /usr/local.")
 662     (license license:gpl3+)))
 663
 664 (define-public xstow
 665   (package
 666     (name "xstow")
 667     (version "1.0.2")
 668     (source (origin
 669               (method url-fetch)
 670               (uri (string-append "mirror://sourceforge/xstow/xstow-"
 671                                   version ".tar.bz2"))
 672               (sha256
 673                (base32
 674                 "1vy6lcswpkixh7h5mvsmq2wbcih6lpsmcva3m7v6f5npllciy13g"))))
 675     (build-system gnu-build-system)
 676     (synopsis "Replacement of GNU Stow written in C++")
 677     (description
 678      "XStow is a replacement of GNU Stow written in C++.  It supports all
 679 features of Stow with some extensions.")
 680     (home-page "http://xstow.sourceforge.net/")
 681     (license license:gpl2)))
 682
 683 (define-public rpm
 684   (package
 685     (name "rpm")
 686     (version "4.16.1.3")
 687     (source (origin
 688               (method url-fetch)
 689               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 690                                   (version-major+minor version) ".x/rpm-"
 691                                   version ".tar.bz2"))
 692               (sha256
 693                (base32
 694                 "07g2g0adgjm29wqy94iqhpp5dk0hacfw1yf7kzycrrxnfbwwfgai"))))
 695     (build-system gnu-build-system)
 696     (arguments
 697      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 698                            "--enable-python"
 699                            "--without-lua")
 700        #:phases (modify-phases %standard-phases
 701                   (add-before 'configure 'set-nss-library-path
 702                     (lambda* (#:key inputs #:allow-other-keys)
 703                       (let ((nss (assoc-ref inputs "nss")))
 704                         (setenv "LIBRARY_PATH"
 705                                 (string-append (getenv "LIBRARY_PATH") ":"
 706                                                nss "/lib/nss"))
 707                         #t))))))
 708     (native-inputs
 709      `(("pkg-config" ,pkg-config)))
 710     (inputs
 711      `(("python" ,python)
 712        ("xz" ,xz)
 713        ("bdb" ,bdb)
 714        ("popt" ,popt)
 715        ("nss" ,nss)
 716        ("nspr" ,nspr)
 717        ("libarchive" ,libarchive)
 718        ("libgcrypt" ,libgcrypt)
 719        ("file" ,file)
 720        ("bzip2" ,bzip2)
 721        ("zlib" ,zlib)
 722        ("cpio" ,cpio)))
 723     (home-page "https://rpm.org/")
 724     (synopsis "The RPM Package Manager")
 725     (description
 726      "The RPM Package Manager (RPM) is a command-line driven package
 727 management system capable of installing, uninstalling, verifying, querying,
 728 and updating computer software packages.  Each software package consists of an
 729 archive of files along with information about the package like its version, a
 730 description.  There is also a library permitting developers to manage such
 731 transactions from C or Python.")
 732
 733     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 734     (license license:gpl2+)))
 735
 736 (define-public python-anaconda-client
 737   (package
 738     (name "python-anaconda-client")
 739     (version "1.6.3")
 740     (source
 741      (origin
 742        (method git-fetch)
 743        (uri (git-reference
 744               (url "https://github.com/Anaconda-Platform/anaconda-client")
 745               (commit version)))
 746        (file-name (git-file-name name version))
 747        (sha256
 748         (base32
 749          "0w1bfxnydjl9qp53r2gcvr6vlpdqqilcrzqxrll9sgg6vwdyiyyp"))))
 750     (build-system python-build-system)
 751     (propagated-inputs
 752      `(("python-pyyaml" ,python-pyyaml)
 753        ("python-requests" ,python-requests)
 754        ("python-clyent" ,python-clyent)))
 755     (native-inputs
 756      `(("python-pytz" ,python-pytz)
 757        ("python-dateutil" ,python-dateutil)
 758        ("python-mock" ,python-mock)
 759        ("python-coverage" ,python-coverage)
 760        ("python-pillow" ,python-pillow)))
 761     (arguments
 762      `(#:phases
 763        (modify-phases %standard-phases
 764          ;; This is needed for some tests.
 765          (add-before 'check 'set-up-home
 766            (lambda* _ (setenv "HOME" "/tmp") #t))
 767          (add-before 'check 'remove-network-tests
 768            (lambda* _
 769              ;; Remove tests requiring a network connection
 770              (let ((network-tests '("tests/test_upload.py"
 771                                     "tests/test_authorizations.py"
 772                                     "tests/test_login.py"
 773                                     "tests/test_whoami.py"
 774                                     "utils/notebook/tests/test_data_uri.py"
 775                                     "utils/notebook/tests/test_base.py"
 776                                     "utils/notebook/tests/test_downloader.py"
 777                                     "inspect_package/tests/test_conda.py")))
 778                (with-directory-excursion "binstar_client"
 779                  (for-each delete-file network-tests)))
 780              #t)))))
 781     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 782     (synopsis "Anaconda Cloud command line client library")
 783     (description
 784      "Anaconda Cloud command line client library provides an interface to
 785 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 786 environments.")
 787     (license license:bsd-3)))
 788
 789 (define-public python2-anaconda-client
 790   (package-with-python2 python-anaconda-client))
 791
 792 (define-public python-conda-package-handling
 793   (package
 794     (name "python-conda-package-handling")
 795     (version "1.6.0")
 796     (source
 797      (origin
 798        (method git-fetch)
 799        (uri (git-reference
 800              (url "https://github.com/conda/conda-package-handling/")
 801              (commit version)))
 802        (file-name (git-file-name name version))
 803        (sha256
 804         (base32
 805          "0bqbs6a8jbjmbn47n5n1p529cx7pf4vgfnhqca9mflgidfb5i0jf"))))
 806     (build-system python-build-system)
 807     (arguments
 808      `(#:phases
 809        (modify-phases %standard-phases
 810          (add-after 'unpack 'use-unmodified-libarchive
 811            (lambda _
 812              (substitute* "setup.py"
 813                (("archive_and_deps") "archive"))
 814              #t))
 815          (replace 'check
 816            (lambda* (#:key inputs outputs #:allow-other-keys)
 817              (add-installed-pythonpath inputs outputs)
 818              (invoke "pytest" "-vv" "tests"
 819                      "-k"
 820                      (string-append
 821                       ;; TODO: these three fail because the mocker fixture
 822                       ;; cannot be found
 823                       "not test_rename_to_trash"
 824                       " and not test_api_extract_tarball_with_libarchive_import_error"
 825                       " and not test_delete_trash"
 826                       ;; TODO: this one does not raise an exception when it
 827                       ;; should.
 828                       " and not test_secure_refusal_to_extract_abs_paths")))))))
 829     (propagated-inputs
 830      `(("python-six" ,python-six)
 831        ("python-tqdm" ,python-tqdm)))
 832     (inputs
 833      `(("libarchive" ,libarchive)))
 834     (native-inputs
 835      `(("python-cython" ,python-cython)
 836        ("python-pytest" ,python-pytest)
 837        ("python-pytest-cov" ,python-pytest-cov)
 838        ("python-mock" ,python-mock)))
 839     (home-page "https://conda.io")
 840     (synopsis "Create and extract conda packages of various formats")
 841     (description
 842      "This library is an abstraction of Conda package handling and a tool for
 843 extracting, creating, and converting between formats.")
 844     (license license:bsd-3)))
 845
 846 (define-public conda
 847   (package
 848     (name "conda")
 849     (version "4.8.3")
 850     (source
 851      (origin
 852        (method git-fetch)
 853        (uri (git-reference
 854               (url "https://github.com/conda/conda")
 855               (commit version)))
 856        (file-name (git-file-name name version))
 857        (sha256
 858         (base32
 859          "0iv1qzk21jsk6vdp3106xvpvl68zgfdqb3kyzpya87jhkl204l7r"))))
 860     (build-system python-build-system)
 861     (arguments
 862      `(#:phases
 863        (modify-phases %standard-phases
 864          (add-after 'unpack 'fix-permissions
 865            (lambda _
 866              ;; This file is no longer writable after downloading with
 867              ;; 'git-fetch'
 868              (make-file-writable
 869               "tests/conda_env/support/saved-env/environment.yml")
 870              #t))
 871          (add-after 'unpack 'correct-python-executable-name
 872            (lambda* (#:key inputs #:allow-other-keys)
 873              (let ((python (assoc-ref inputs "python-wrapper")))
 874                #;
 875                (substitute* "conda/common/path.py"
 876                  (("python_version or ''")
 877                   "python_version or '3'"))
 878                (substitute* "conda/core/initialize.py"
 879                  (("python_exe = join")
 880                   (format #f "python_exe = \"~a/bin/python\" #"
 881                           python))))
 882              #t))
 883          (add-after 'unpack 'do-not-use-python-root-as-prefix
 884            (lambda* (#:key inputs outputs #:allow-other-keys)
 885              (let ((out (assoc-ref outputs "out"))
 886                    (python (assoc-ref inputs "python-wrapper")))
 887                (substitute* "tests/core/test_initialize.py"
 888                  (("\"\"\"\\) % conda_prefix")
 889                   (format #f "\"\"\") % \"~a\"" python))
 890                  (("CONDA_PYTHON_EXE \"%s\"' % join\\(conda_prefix")
 891                   (format #f "CONDA_PYTHON_EXE \"%s\"' % join(\"~a\""
 892                           python))
 893                  (("conda_prefix = abspath\\(sys.prefix\\)")
 894                   (format #f "conda_prefix = abspath(\"~a\")" out)))
 895                (substitute* "conda/base/context.py"
 896                  (("os.chdir\\(sys.prefix\\)")
 897                   (format #f "os.chdir(\"~a\")" out))
 898                  (("sys.prefix, '.condarc'")
 899                   (format #f "\"~a\", '.condarc'" out))
 900                  (("return abspath\\(sys.prefix\\)")
 901                   (format #f "return abspath(\"~a\")" out))
 902                  (("os.path.join\\(sys.prefix, bin_dir, exe\\)")
 903                   (format #f "\"~a/bin/conda\"" out))
 904                  (("'CONDA_EXE', sys.executable")
 905                   (format #f "'CONDA_EXE', \"~a/bin/conda\"" out))))
 906              #t))
 907          (add-before 'build 'create-version-file
 908            (lambda _
 909              (with-output-to-file "conda/.version"
 910                (lambda () (display ,version)))
 911              #t))
 912          (replace 'check
 913            (lambda _
 914              (setenv "HOME" "/tmp")
 915              (invoke "py.test" "-vv"
 916                      "-k"
 917                      (string-append
 918                       "not integration"
 919                       ;; This one reports a newer version of conda than
 920                       ;; expected.
 921                       " and not test_auto_update_conda"
 922                       ;; This fails because the output directory is not a
 923                       ;; Conda environment.
 924                       " and not test_list"
 925                       ;; This fails because we patched the default root
 926                       ;; prefix.
 927                       " and not test_default_target_is_root_prefix"
 928                       ;; TODO: I don't understand what this failure means
 929                       " and not test_PrefixData_return_value_contract"
 930                       ;; TODO: same here
 931                       " and not test_install_1"
 932                       ;; Not sure if this is really wrong.  This fails because
 933                       ;; /gnu/store/...python-conda-4.8.3/bin/python
 934                       ;; is not /gnu/store/...python-wrapper-3.8.2/bin/python
 935                       " and not test_make_entry_point"))))
 936          (add-after 'install 'init
 937            ;; This writes a whole bunch of shell initialization files to the
 938            ;; prefix directory.  Many features of conda can only be used after
 939            ;; running "conda init".
 940            (lambda* (#:key inputs outputs #:allow-other-keys)
 941              (add-installed-pythonpath inputs outputs)
 942              (setenv "HOME" "/tmp")
 943
 944              ;; "conda init" insists on using sudo, because it is hell-bent on
 945              ;; modifying system files.
 946              (mkdir-p "/tmp/fake-sudo")
 947              (with-output-to-file "/tmp/fake-sudo/sudo"
 948                (lambda () (format #t "#!~/bin/sh~%exec $@" (which "sh"))))
 949              (chmod "/tmp/fake-sudo/sudo" #o700)
 950              (setenv "PATH" (string-append "/tmp/fake-sudo:"
 951                                            (getenv "PATH")))
 952
 953              (invoke (string-append (assoc-ref outputs "out")
 954                                     "/bin/conda")
 955                      "init"))))))
 956     (inputs
 957      `(("python-wrapper" ,python-wrapper)))
 958     (propagated-inputs
 959      `(("python-anaconda-client" ,python-anaconda-client)
 960        ("python-conda-package-handling" ,python-conda-package-handling)
 961        ("python-cytoolz" ,python-cytoolz)
 962        ("python-pycosat" ,python-pycosat)
 963        ("python-pytest" ,python-pytest)
 964        ("python-pyyaml" ,python-pyyaml)
 965        ("python-requests" ,python-requests)
 966        ("python-responses" ,python-responses)
 967        ("python-ruamel.yaml" ,python-ruamel.yaml)
 968        ("python-tqdm" ,python-tqdm)
 969        ;; XXX: This is dragged in by libarchive and is needed at runtime.
 970        ("zstd" ,zstd)))
 971     (home-page "https://github.com/conda/conda")
 972     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 973     (description
 974      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 975 is the package manager used by Anaconda installations, but it may be used for
 976 other systems as well.  Conda makes environments first-class citizens, making
 977 it easy to create independent environments even for C libraries.  Conda is
 978 written entirely in Python.")
 979     (license license:bsd-3)))
 980
 981 (define-public python-conda
 982   (deprecated-package "python-conda" conda))
 983
 984 (define-public gwl
 985   (package
 986     (name "gwl")
 987     (version "0.3.0")
 988     (source (origin
 989               (method url-fetch)
 990               (uri (string-append "mirror://gnu/gwl/gwl-" version ".tar.gz"))
 991               (sha256
 992                (base32
 993                 "1lqif00mq7fsaknbc2gvvcv1j89k311sm44jp9jklbrv0v2lc83n"))))
 994     (build-system gnu-build-system)
 995     (arguments
 996      `(#:parallel-build? #false ; for reproducibility
 997        #:make-flags
 998        '("GUILE_AUTO_COMPILE=0")))
 999     (native-inputs
1000      `(("autoconf" ,autoconf)
1001        ("automake" ,automake)
1002        ("pkg-config" ,pkg-config)
1003        ("texinfo" ,texinfo)
1004        ("graphviz" ,graphviz)))
1005     (inputs
1006      (let ((p (package-input-rewriting
1007                `((,guile-3.0 . ,guile-3.0-latest))
1008                #:deep? #false)))
1009        `(("guix" ,guix)
1010          ("guile" ,guile-3.0-latest)
1011          ("guile-commonmark" ,(p guile-commonmark))
1012          ("guile-config" ,(p guile-config))
1013          ("guile-gcrypt" ,(p guile-gcrypt))
1014          ("guile-pfds" ,(p guile-pfds))
1015          ("guile-syntax-highlight" ,(p guile-syntax-highlight))
1016          ("guile-wisp" ,(p guile-wisp)))))
1017     (home-page "https://workflows.guix.info")
1018     (synopsis "Workflow management extension for GNU Guix")
1019     (description "The @dfn{Guix Workflow Language} (GWL) provides an
1020 extension to GNU Guix's declarative language for package management to
1021 automate the execution of programs in scientific workflows.  The GWL
1022 can use process engines to integrate with various computing
1023 environments.")
1024     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
1025     ;; the web interface modules in gwl/ are licensed AGPL3+,
1026     ;; and the fonts included in this package are licensed OFL1.1.
1027     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
1028
1029 (define-public guix-build-coordinator
1030   (let ((commit "f9af463e81d9fcc712d7c58a491101d8d17457e8")
1031         (revision "30"))
1032     (package
1033       (name "guix-build-coordinator")
1034       (version (git-version "0" revision commit))
1035       (source (origin
1036                 (method git-fetch)
1037                 (uri (git-reference
1038                       (url "https://git.cbaines.net/git/guix/build-coordinator")
1039                       (commit commit)))
1040                 (sha256
1041                  (base32
1042                   "08ysa7a33fsm069gxqnvbf1yzqcsky6gk2pifamkq0wq1dls661r"))
1043                 (file-name (string-append name "-" version "-checkout"))))
1044       (build-system gnu-build-system)
1045       (arguments
1046        `(#:modules (((guix build guile-build-system)
1047                      #:select (target-guile-effective-version))
1048                     ,@%gnu-build-system-modules)
1049          #:imported-modules ((guix build guile-build-system)
1050                              ,@%gnu-build-system-modules)
1051          #:phases
1052          (modify-phases %standard-phases
1053            (add-before 'build 'set-GUILE_AUTO_COMPILE
1054              (lambda _
1055                ;; To avoid warnings relating to 'guild'.
1056                (setenv "GUILE_AUTO_COMPILE" "0")
1057                #t))
1058            (add-after 'install 'wrap-executable
1059              (lambda* (#:key inputs outputs target #:allow-other-keys)
1060                (let* ((out (assoc-ref outputs "out"))
1061                       (bin (string-append out "/bin"))
1062                       (guile (assoc-ref inputs "guile"))
1063                       (version (target-guile-effective-version))
1064                       (scm (string-append out "/share/guile/site/" version))
1065                       (go  (string-append out "/lib/guile/" version "/site-ccache")))
1066                  (for-each
1067                   (lambda (file)
1068                     (simple-format (current-error-port) "wrapping: ~A\n" file)
1069                     (let ((guile-inputs (list
1070                                          "guile-json"
1071                                          "guile-gcrypt"
1072                                          "guix"
1073                                          "guile-prometheus"
1074                                          "guile-lib"
1075                                          "guile-lzlib"
1076                                          "guile-zlib"
1077                                          "guile-sqlite3"
1078                                          "gnutls"
1079                                          ,@(if (hurd-target?)
1080                                                '()
1081                                                '("guile-fibers")))))
1082                       (wrap-program file
1083                         `("PATH" ":" prefix
1084                           (,bin
1085                            ;; Support building without sqitch as an input, as it
1086                            ;; can't be cross-compiled yet
1087                            ,@(or (and=> (assoc-ref inputs "sqitch")
1088                                         list)
1089                                  '())))
1090                         `("GUILE_LOAD_PATH" ":" prefix
1091                           (,scm ,(string-join
1092                                   (map (lambda (input)
1093                                          (simple-format
1094                                           #f "~A/share/guile/site/~A"
1095                                           (assoc-ref inputs input)
1096                                           version))
1097                                        guile-inputs)
1098                                   ":")))
1099                         `("GUILE_LOAD_COMPILED_PATH" ":" prefix
1100                           (,go ,(string-join
1101                                  (map (lambda (input)
1102                                         (simple-format
1103                                          #f "~A/lib/guile/~A/site-ccache"
1104                                          (assoc-ref inputs input)
1105                                          version))
1106                                       guile-inputs)
1107                                  ":"))))
1108                       (when target
1109                         ;; XXX work around wrap-program picking bash for the
1110                         ;; host rather than target
1111                         (let ((bash (assoc-ref inputs "bash")))
1112                           (substitute* file
1113                             (("^#!.*/bash")
1114                              (string-append "#! " bash "/bin/bash")))))))
1115                   (find-files bin)))
1116                #t))
1117            (delete 'strip))))             ; As the .go files aren't compatible
1118       (native-inputs
1119        `(("pkg-config" ,pkg-config)
1120          ("autoconf" ,autoconf)
1121          ("automake" ,automake)
1122          ("gnutls" ,gnutls)
1123
1124          ;; Guile libraries are needed here for cross-compilation.
1125          ("guile-json" ,guile-json-4)
1126          ("guile-gcrypt" ,guile-gcrypt)
1127          ("guix" ,guix)
1128          ("guile-prometheus" ,guile-prometheus)
1129          ("guile-fibers" ,guile-fibers)
1130          ("guile-lib" ,guile-lib)
1131          ("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
1132       (inputs
1133        `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))
1134          ,@(if (%current-target-system)
1135                `(("bash" ,bash-minimal))
1136                '())
1137          ("sqlite" ,sqlite)
1138          ,@(if (hurd-target?)
1139                '()
1140                `(("sqitch" ,sqitch)))))
1141       (propagated-inputs
1142        `(,@(if (hurd-target?)
1143                '()
1144                `(("guile-fibers" ,guile-fibers)))
1145          ("guile-prometheus" ,guile-prometheus)
1146          ("guile-gcrypt" ,guile-gcrypt)
1147          ("guile-json" ,guile-json-4)
1148          ("guile-lib" ,guile-lib)
1149          ("guile-lzlib" ,guile-lzlib)
1150          ("guile-zlib" ,guile-zlib)
1151          ("guile-sqlite3" ,guile-sqlite3)
1152          ("guix" ,guix)
1153          ("gnutls" ,gnutls)))
1154       (home-page "https://git.cbaines.net/guix/build-coordinator/")
1155       (synopsis "Tool to help build derivations")
1156       (description
1157        "The Guix Build Coordinator helps with performing lots of builds across
1158 potentially many machines, and with doing something with the results and
1159 outputs of those builds.")
1160       (license license:gpl3+))))
1161
1162 (define-public guix-jupyter
1163   (package
1164     (name "guix-jupyter")
1165     (version "0.2.1")
1166     (home-page "https://gitlab.inria.fr/guix-hpc/guix-kernel")
1167     (source (origin
1168               (method git-fetch)
1169               (uri (git-reference (url home-page)
1170                                   (commit (string-append "v" version))))
1171               (sha256
1172                (base32
1173                 "1kqwfp5h95s6mirq5nbydsbmlhsinn32grz1ld5mbxvhl6sn2i0j"))
1174               (file-name (string-append "guix-jupyter-" version "-checkout"))))
1175     (build-system gnu-build-system)
1176     (arguments
1177      `(#:modules ((srfi srfi-26)
1178                   (ice-9 match)
1179                   (ice-9 popen)
1180                   (ice-9 rdelim)
1181                   (guix build utils)
1182                   (guix build gnu-build-system))
1183        #:phases
1184        (modify-phases %standard-phases
1185          (add-after 'install 'sed-kernel-json
1186            (lambda* (#:key inputs outputs #:allow-other-keys)
1187              (let* ((out   (assoc-ref outputs "out"))
1188                     (guix  (assoc-ref inputs  "guix"))
1189                     (guile (assoc-ref inputs  "guile"))
1190                     (json  (assoc-ref inputs  "guile-json"))
1191                     (git   (assoc-ref inputs  "guile-git"))
1192                     (bs    (assoc-ref inputs  "guile-bytestructures"))
1193                     (s-zmq (assoc-ref inputs  "guile-simple-zmq"))
1194                     (gcrypt (assoc-ref inputs  "guile-gcrypt"))
1195                     (deps  (list out s-zmq guix json git bs gcrypt))
1196                     (effective
1197                      (read-line
1198                       (open-pipe* OPEN_READ
1199                                   (string-append guile "/bin/guile")
1200                                   "-c" "(display (effective-version))")))
1201                     (path (map (cut string-append "-L\", \"" <>
1202                                     "/share/guile/site/"
1203                                     effective)
1204                                deps))
1205                     (gopath (map (cut string-append "-C\", \"" <>
1206                                       "/lib/guile/" effective
1207                                       "/site-ccache")
1208                                  deps))
1209                     (kernel-dir (string-append out "/share/jupyter/kernels/guix/")))
1210                (substitute* (string-append kernel-dir "kernel.json")
1211                  (("-s")
1212                   (string-join
1213                    (list (string-join path "\",\n\t\t\"")
1214                          (string-join gopath "\",\n\t\t\"")
1215                          "-s")
1216                    "\",\n\t\t\""))
1217                  (("guix-jupyter-kernel.scm")
1218                   (string-append out "/share/guile/site/3.0/"
1219                                  "guix-jupyter-kernel.scm")))
1220                #t))))))
1221     (native-inputs
1222      `(("autoconf" ,autoconf)
1223        ("automake" ,automake)
1224        ("pkg-config" ,pkg-config)
1225
1226        ;; For testing.
1227        ("jupyter" ,jupyter)
1228        ("python-ipython" ,python-ipython)
1229        ("python-ipykernel" ,python-ipykernel)))
1230     (inputs
1231      `(("guix" ,guix)
1232        ("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
1233     (propagated-inputs
1234      `(("guile-json" ,guile-json-4)
1235        ("guile-simple-zmq" ,guile-simple-zmq)
1236        ("guile-gcrypt" ,guile-gcrypt)))
1237     (synopsis "Guix kernel for Jupyter")
1238     (description
1239      "Guix-Jupyter is a Jupyter kernel.  It allows you to annotate notebooks
1240 with information about their software dependencies, such that code is executed
1241 in the right software environment.  Guix-Jupyter spawns the actual kernels
1242 such as @code{python-ipykernel} on behalf of the notebook user and runs them
1243 in an isolated environment, in separate namespaces.")
1244     (license license:gpl3+)))
1245
1246 (define-public gcab
1247   (package
1248     (name "gcab")
1249     (version "1.4")
1250     (source (origin
1251               (method url-fetch)
1252               (uri (string-append "mirror://gnome/sources/gcab/"
1253                                   version "/gcab-" version ".tar.xz"))
1254               (sha256
1255                (base32
1256                 "13q43iqld4l50yra45lhvkd376pn6qpk7rkx374zn8y9wsdzm9b7"))))
1257     (build-system meson-build-system)
1258     (native-inputs
1259      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
1260        ("intltool" ,intltool)
1261        ("pkg-config" ,pkg-config)
1262        ("vala" ,vala)))
1263     (inputs
1264      `(("glib" ,glib)
1265        ("zlib" ,zlib)))
1266     (arguments
1267      `(#:configure-flags
1268        ;; XXX This ‘documentation’ is for developers, and fails informatively:
1269        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
1270        (list "-Ddocs=false"
1271              "-Dintrospection=false")))
1272     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
1273     (synopsis "Microsoft Cabinet file manipulation library")
1274     (description
1275      "The libgcab library provides GObject functions to read, write, and modify
1276 Microsoft cabinet (.@dfn{CAB}) files.")
1277     (license (list license:gpl2+        ; tests/testsuite.at
1278                    license:lgpl2.1+)))) ; the rest
1279
1280 (define-public msitools
1281   (package
1282     (name "msitools")
1283     (version "0.100")
1284     (source (origin
1285               (method url-fetch)
1286               (uri (string-append "mirror://gnome/sources/msitools/"
1287                                   version "/msitools-" version ".tar.xz"))
1288               (sha256
1289                (base32
1290                 "1skq17qr2ic4qr3779j49byfm8rncwbsq9rj1a33ncn2m7isdwdv"))))
1291     (build-system gnu-build-system)
1292     (native-inputs
1293      `(("bison" ,bison)
1294        ("pkg-config" ,pkg-config)))
1295     (inputs
1296      `(("gcab" ,gcab)
1297        ("glib" ,glib)
1298        ("libgsf" ,libgsf)
1299        ("libxml2" ,libxml2)
1300        ("uuid" ,util-linux "lib")))
1301     (home-page "https://wiki.gnome.org/msitools")
1302     (synopsis "Windows Installer file manipulation tool")
1303     (description
1304      "msitools is a collection of command-line tools to inspect, extract, build,
1305 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
1306 for packaging and deployment of cross-compiled Windows applications.")
1307     (license license:lgpl2.1+)))
1308
1309 (define-public libostree
1310   (package
1311     (name "libostree")
1312     (version "2021.2")
1313     (source
1314      (origin
1315        (method url-fetch)
1316        (uri (string-append
1317              "https://github.com/ostreedev/ostree/releases/download/v"
1318              (version-major+minor version) "/libostree-" version ".tar.xz"))
1319        (sha256
1320         (base32 "0z2x9krnd6nblwq0nz99igzhh3yv022rn3hgcyrzci0xqzkhhh45"))))
1321     (build-system gnu-build-system)
1322     (arguments
1323      '(#:phases
1324        (modify-phases %standard-phases
1325          (add-before 'check 'pre-check
1326            (lambda _
1327              ;; Don't try to use the non-existing '/var/tmp' as test
1328              ;; directory.
1329              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
1330              #t)))
1331        ;; XXX: fails with:
1332        ;;     tap-driver.sh: missing test plan
1333        ;;     tap-driver.sh: internal error getting exit status
1334        ;;     tap-driver.sh: fatal: I/O or internal error
1335        #:tests? #f))
1336     (native-inputs
1337      `(("attr" ,attr)                   ; for tests
1338        ("bison" ,bison)
1339        ("glib:bin" ,glib "bin")         ; for 'glib-mkenums'
1340        ("gobject-introspection" ,gobject-introspection)
1341        ("pkg-config" ,pkg-config)
1342        ("xsltproc" ,libxslt)))
1343     (inputs
1344      `(("avahi" ,avahi)
1345        ("docbook-xml" ,docbook-xml-4.2)
1346        ("docbook-xsl" ,docbook-xsl)
1347        ("e2fsprogs" ,e2fsprogs)
1348        ("fuse" ,fuse)
1349        ("glib" ,glib)
1350        ("gpgme" ,gpgme)
1351        ("libarchive" ,libarchive)
1352        ("libsoup" ,libsoup)
1353        ("util-linux" ,util-linux)))
1354     (home-page "https://ostree.readthedocs.io/en/latest/")
1355     (synopsis "Operating system and container binary deployment and upgrades")
1356     (description
1357      "@code{libostree} is both a shared library and suite of command line
1358 tools that combines a \"git-like\" model for committing and downloading
1359 bootable file system trees, along with a layer for deploying them and managing
1360 the boot loader configuration.")
1361     (license license:lgpl2.0+)))
1362
1363 (define-public flatpak
1364   (package
1365    (name "flatpak")
1366    (version "1.10.2")
1367    (source
1368     (origin
1369      (method url-fetch)
1370      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1371                          version "/flatpak-" version ".tar.xz"))
1372      (sha256
1373       (base32 "1r6xw7r3ir2vaa30n3mily6m7d51cf4qv22fkqlzzy3js0wjf5fv"))))
1374
1375    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1376    ;; find the TLS backend in glib-networking.
1377    (build-system glib-or-gtk-build-system)
1378
1379    (arguments
1380     '(#:configure-flags
1381       (list
1382        "--enable-documentation=no" ;; FIXME
1383        "--enable-system-helper=no"
1384        "--localstatedir=/var"
1385        (string-append "--with-system-bubblewrap="
1386                       (assoc-ref %build-inputs "bubblewrap")
1387                       "/bin/bwrap")
1388        (string-append "--with-system-dbus-proxy="
1389                       (assoc-ref %build-inputs "xdg-dbus-proxy")
1390                       "/bin/xdg-dbus-proxy"))
1391       #:phases
1392       (modify-phases %standard-phases
1393         (add-after 'unpack 'fix-tests
1394           (lambda* (#:key inputs #:allow-other-keys)
1395             (copy-recursively
1396              (string-append (assoc-ref inputs "glibc-utf8-locales")
1397                             "/lib/locale/") "/tmp/locale")
1398             (for-each make-file-writable (find-files "/tmp"))
1399             (substitute* "tests/make-test-runtime.sh"
1400               (("cp `which.*") "echo guix\n")
1401               (("cp -r /usr/lib/locale/C\\.\\*")
1402                (string-append "mkdir ${DIR}/usr/lib/locale/en_US; \
1403 cp -r /tmp/locale/*/en_US.*")))
1404             (substitute* "tests/libtest.sh"
1405               (("/bin/kill") (which "kill"))
1406               (("/usr/bin/python3") (which "python3")))
1407             #t))
1408         ;; Many tests fail for unknown reasons, so we just run a few basic
1409         ;; tests.
1410         (replace 'check
1411           (lambda _
1412             (setenv "HOME" "/tmp")
1413             (invoke "make" "check"
1414                     "TESTS=tests/test-basic.sh tests/test-config.sh testcommon"))))))
1415     (native-inputs
1416     `(("bison" ,bison)
1417       ("dbus" ,dbus) ; for dbus-daemon
1418       ("gettext" ,gettext-minimal)
1419       ("glib:bin" ,glib "bin")          ; for glib-mkenums + gdbus-codegen
1420       ("glibc-utf8-locales" ,glibc-utf8-locales)
1421       ("gobject-introspection" ,gobject-introspection)
1422       ("libcap" ,libcap)
1423       ("pkg-config" ,pkg-config)
1424       ("python" ,python)
1425       ("python-pyparsing" ,python-pyparsing)
1426       ("socat" ,socat)
1427       ("which" ,which)))
1428    (propagated-inputs `(("glib-networking" ,glib-networking)
1429                         ("gnupg" ,gnupg)
1430                         ("gsettings-desktop-schemas"
1431                          ,gsettings-desktop-schemas)))
1432    (inputs
1433     `(("appstream-glib" ,appstream-glib)
1434       ("bubblewrap" ,bubblewrap)
1435       ("dconf" ,dconf)
1436       ("fuse" ,fuse)
1437       ("gdk-pixbuf" ,gdk-pixbuf)
1438       ("gpgme" ,gpgme)
1439       ("json-glib" ,json-glib)
1440       ("libarchive" ,libarchive)
1441       ("libostree" ,libostree)
1442       ("libseccomp" ,libseccomp)
1443       ("libsoup" ,libsoup)
1444       ("libxau" ,libxau)
1445       ("libxml2" ,libxml2)
1446       ("util-linux" ,util-linux)
1447       ("xdg-dbus-proxy" ,xdg-dbus-proxy)))
1448    (home-page "https://flatpak.org")
1449    (synopsis "System for building, distributing, and running sandboxed desktop
1450 applications")
1451    (description "Flatpak is a system for building, distributing, and running
1452 sandboxed desktop applications on GNU/Linux.")
1453    (license license:lgpl2.1+)))
1454
1455 (define-public akku
1456   (package
1457     (name "akku")
1458     (version "1.0.1")
1459     (source (origin
1460               (method git-fetch)
1461               (uri (git-reference
1462                     (url "https://gitlab.com/akkuscm/akku.git")
1463                     (commit (string-append "v" version))))
1464               (file-name (git-file-name name version))
1465               (sha256 (base32 "1dm32ws3nshnnscd7k75zswxxs1pp25y2q4k8j5ms241hz47by3c"))))
1466     (build-system gnu-build-system)
1467     (arguments
1468      '(#:phases (modify-phases %standard-phases
1469                   (replace 'bootstrap
1470                     (lambda* (#:key outputs #:allow-other-keys)
1471                       (for-each patch-shebang
1472                                 '("bootstrap"
1473                                   ".akku/env"))
1474                       (let* ((home "/tmp")
1475                              (datadir (string-append home "/.local/share/akku/")))
1476                         (mkdir-p datadir)
1477                         (invoke "touch" (string-append datadir "index.db"))
1478                         (setenv "HOME" home))
1479                       (invoke "./bootstrap")
1480                       #t))
1481                   (add-after 'install 'wrap-executables
1482                     (lambda* (#:key outputs inputs #:allow-other-keys)
1483                       (let ((out (assoc-ref outputs "out"))
1484                             (curl (assoc-ref inputs "curl")))
1485                         (wrap-program (string-append out "/bin/akku")
1486                           `("LD_LIBRARY_PATH" ":" prefix (,(string-append curl "/lib"))))
1487                         #t))))))
1488     (native-inputs
1489      `(("which" ,which)
1490        ("autoconf" ,autoconf)
1491        ("automake" ,automake)
1492        ("pkg-config" ,pkg-config)))
1493     (inputs
1494      `(("guile" ,guile-3.0)
1495        ("curl" ,curl)))
1496     (home-page "https://akkuscm.org/")
1497     (synopsis "Language package manager for Scheme")
1498     (description
1499      "Akku.scm is a project-based language package manager for R6RS and R7RS Scheme.
1500 It is mainly meant for programmers who develop portable programs or libraries in Scheme,
1501 but could potentially work for end-users of those programs.  It also has a translator
1502 from R7RS, which allows most R7RS code to run on R6RS implementations.")
1503     (license license:gpl3+)))