gnu/packages/parallel.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014 Eric Bavier <bavier@member.fsf.org>
   3 ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
   4 ;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
   5 ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
   6 ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
   7 ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
   8 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
   9 ;;;
  10 ;;; This file is part of GNU Guix.
  11 ;;;
  12 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  13 ;;; under the terms of the GNU General Public License as published by
  14 ;;; the Free Software Foundation; either version 3 of the License, or (at
  15 ;;; your option) any later version.
  16 ;;;
  17 ;;; GNU Guix is distributed in the hope that it will be useful, but
  18 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  19 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  20 ;;; GNU General Public License for more details.
  21 ;;;
  22 ;;; You should have received a copy of the GNU General Public License
  23 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  24
  25 (define-module (gnu packages parallel)
  26   #:use-module (guix build-system gnu)
  27   #:use-module (guix download)
  28   #:use-module ((guix licenses) #:prefix license:)
  29   #:use-module (guix packages)
  30   #:use-module (gnu packages)
  31   #:use-module (gnu packages admin)
  32   #:use-module (gnu packages autotools)
  33   #:use-module (gnu packages base)
  34   #:use-module (gnu packages freeipmi)
  35   #:use-module (gnu packages linux)
  36   #:use-module (gnu packages mpi)
  37   #:use-module (gnu packages perl)
  38   #:use-module (gnu packages pkg-config)
  39   #:use-module (gnu packages python)
  40   #:use-module (gnu packages readline)
  41   #:use-module (gnu packages tcl)
  42   #:use-module (gnu packages tls)
  43   #:use-module (gnu packages web))
  44
  45 (define-public parallel
  46   (package
  47     (name "parallel")
  48     (version "20170122")
  49     (source
  50      (origin
  51       (method url-fetch)
  52       (uri (string-append "mirror://gnu/parallel/parallel-"
  53                           version ".tar.bz2"))
  54       (sha256
  55        (base32
  56         "19maf889vj1c4zakqwap58f44hgypyb5mzzwfsliir9gvvcq6zj1"))))
  57     (build-system gnu-build-system)
  58     (arguments
  59      `(#:phases
  60        (modify-phases %standard-phases
  61          (add-after 'unpack 'patch-bin-sh
  62            (lambda _
  63              (for-each
  64               (lambda (file)
  65                 (substitute* file
  66                   ;; Patch hard coded '/bin/sh' in the lin ending in:
  67                   ;; $Global::shell = $ENV{'PARALLEL_SHELL'} ||
  68                   ;;  parent_shell($$) || $ENV{'SHELL'} || "/bin/sh";
  69                   (("/bin/sh\\\";\n$") (string-append (which "sh") "\";\n"))
  70                   ;; Patch call to 'ps' and 'perl' commands.
  71                   ((" ps ") (string-append " " (which "ps") " "))
  72                   ((" perl -") (string-append " " (which "perl") " -"))))
  73               (list "src/parallel" "src/sem"))
  74              #t))
  75          (add-after 'install 'post-install-test
  76            (lambda* (#:key outputs #:allow-other-keys)
  77              (zero? (system* (string-append
  78                               (assoc-ref outputs "out") "/bin/parallel")
  79                              "echo"
  80                              ":::" "1" "2" "3")))))))
  81     (inputs
  82      `(("perl" ,perl)
  83        ("procps" ,procps)))
  84     (home-page "https://www.gnu.org/software/parallel/")
  85     (synopsis "Build and execute command lines in parallel")
  86     (description
  87      "GNU Parallel is a tool for executing shell jobs in parallel using one
  88 or more computers.  Jobs can consist of single commands or of scripts
  89 and they are executed on lists of files, hosts, users or other items.")
  90     (license license:gpl3+)))
  91
  92 (define-public slurm
  93   (package
  94    (name "slurm")
  95    (version "16.05.9.1")
  96    (source (origin
  97             (method url-fetch)
  98             (uri (string-append
  99                   "https://github.com/SchedMD/slurm/archive/slurm-"
 100                   (string-join (string-split version #\.) "-") ".tar.gz"))
 101             (file-name (string-append name "-" version ".tar.gz"))
 102             (sha256
 103              (base32
 104               "1zx5y2lyjknnca4aw7cbawn00mjhsqzy3h35w7s757cykfjqr8gv"))
 105             (patches (search-patches
 106                       "slurm-configure-remove-nonfree-contribs.patch"))
 107             (modules '((guix build utils)))
 108             (snippet
 109              '(begin
 110                 (delete-file-recursively "contribs")
 111                 #t))))
 112    ;; FIXME: More optional inputs could be added,
 113    ;; in particular mysql and gtk+.
 114    (inputs `(("expect" ,expect)
 115              ("freeipmi" ,freeipmi)
 116              ("hwloc" ,hwloc)
 117              ("json-c" ,json-c)
 118              ("linux-pam" , linux-pam)
 119              ("munge" ,munge)
 120              ("numactl" ,numactl)
 121              ("openssl" ,openssl)
 122              ("perl" ,perl)
 123              ("python" ,python-wrapper)
 124              ("readline" ,readline)))
 125    (native-inputs
 126     `(("autoconf" ,autoconf)
 127       ("pkg-config" ,pkg-config)))
 128    (build-system gnu-build-system)
 129    (arguments
 130     `(#:configure-flags
 131       (list "--enable-pam"
 132             (string-append "--with-freeipmi=" (assoc-ref %build-inputs "freeipmi"))
 133             (string-append "--with-hwloc=" (assoc-ref %build-inputs "hwloc"))
 134             (string-append "--with-json=" (assoc-ref %build-inputs "json-c"))
 135             (string-append "--with-munge=" (assoc-ref %build-inputs "munge"))
 136             (string-append "--with-ssl=" (assoc-ref %build-inputs "openssl")))
 137       #:phases
 138       (modify-phases %standard-phases
 139        (add-before
 140         'configure 'autogen
 141         (lambda _ (zero? (system* "autoconf"))))))) ; configure.ac was patched
 142    (home-page "http://slurm.schedmd.com/")
 143    (synopsis "Workload manager for cluster computing")
 144    (description
 145     "SLURM is a fault-tolerant and highly scalable cluster management and job
 146 scheduling system for large and small clusters.  It allocates access to
 147 resources (computer nodes) to users for some duration of time, provides a
 148 framework for starting, executing, and monitoring work (typically a parallel
 149 job) on a set of allocated nodes, and arbitrates contention for resources
 150 by managing a queue of pending work.")
 151    (license license:gpl2+)))
 152
 153 (define-public slurm-drmaa
 154   (package
 155     (name "slurm-drmaa")
 156     (version "1.0.7")
 157     (source (origin
 158               (method url-fetch)
 159               (uri "http://apps.man.poznan.pl/trac/slurm-drmaa/downloads/9")
 160               (file-name (string-append name "-" version ".tar.gz"))
 161               (sha256
 162                (base32
 163                 "0grw55hmny2mc4nc0y1arnvxd2k0dcdfn476kzs180fibjxgfw14"))))
 164     (build-system gnu-build-system)
 165     (inputs
 166      `(("slurm" ,slurm)))
 167     (native-inputs
 168      `(("which" ,which)))
 169     (home-page "http://apps.man.poznan.pl/trac/slurm-drmaa")
 170     (synopsis "Distributed resource management application API for SLURM")
 171     (description
 172      "PSNC DRMAA for Simple Linux Utility for Resource Management (SLURM) is
 173 an implementation of Open Grid Forum DRMAA 1.0 (Distributed Resource
 174 Management Application API) specification for submission and control of jobs
 175 to SLURM.  Using DRMAA, grid applications builders, portal developers and ISVs
 176 can use the same high-level API to link their software with different
 177 cluster/resource management systems.")
 178     (license license:gpl3+)))