gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Vagrant Cascadian <vagrant@reproducible-builds.org>
  14 ;;;
  15 ;;; This file is part of GNU Guix.
  16 ;;;
  17 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  18 ;;; under the terms of the GNU General Public License as published by
  19 ;;; the Free Software Foundation; either version 3 of the License, or (at
  20 ;;; your option) any later version.
  21 ;;;
  22 ;;; GNU Guix is distributed in the hope that it will be useful, but
  23 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  24 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  25 ;;; GNU General Public License for more details.
  26 ;;;
  27 ;;; You should have received a copy of the GNU General Public License
  28 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  29
  30 (define-module (gnu packages package-management)
  31   #:use-module (gnu packages)
  32   #:use-module (gnu packages acl)
  33   #:use-module (gnu packages attr)
  34   #:use-module (gnu packages avahi)
  35   #:use-module (gnu packages autotools)
  36   #:use-module (gnu packages backup)
  37   #:use-module (gnu packages base)
  38   #:use-module (gnu packages bdw-gc)
  39   #:use-module (gnu packages bison)
  40   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  41   #:use-module (gnu packages check)
  42   #:use-module (gnu packages compression)
  43   #:use-module (gnu packages cpio)
  44   #:use-module (gnu packages crypto)
  45   #:use-module (gnu packages curl)
  46   #:use-module (gnu packages dbm)
  47   #:use-module (gnu packages docbook)
  48   #:use-module (gnu packages file)
  49   #:use-module (gnu packages gettext)
  50   #:use-module (gnu packages glib)
  51   #:use-module (gnu packages gnome)
  52   #:use-module (gnu packages gnupg)
  53   #:use-module (gnu packages graphviz)
  54   #:use-module (gnu packages gtk)
  55   #:use-module (gnu packages guile)
  56   #:use-module (gnu packages guile-xyz)
  57   #:use-module (gnu packages linux)
  58   #:use-module (gnu packages lisp)
  59   #:use-module (gnu packages man)
  60   #:use-module (gnu packages nettle)
  61   #:use-module (gnu packages nss)
  62   #:use-module (gnu packages patchutils)
  63   #:use-module (gnu packages perl)
  64   #:use-module (gnu packages perl-check)
  65   #:use-module (gnu packages pkg-config)
  66   #:use-module (gnu packages popt)
  67   #:use-module (gnu packages python)
  68   #:use-module (gnu packages python-web)
  69   #:use-module (gnu packages python-xyz)
  70   #:use-module (gnu packages serialization)
  71   #:use-module (gnu packages sqlite)
  72   #:use-module (gnu packages ssh)
  73   #:use-module (gnu packages texinfo)
  74   #:use-module (gnu packages time)
  75   #:use-module (gnu packages tls)
  76   #:use-module (gnu packages vim)
  77   #:use-module (gnu packages virtualization)
  78   #:use-module (gnu packages web)
  79   #:use-module (gnu packages xml)
  80   #:use-module (gnu packages xorg)
  81   #:use-module (guix build-system glib-or-gtk)
  82   #:use-module (guix build-system gnu)
  83   #:use-module (guix build-system meson)
  84   #:use-module (guix build-system python)
  85   #:use-module (guix download)
  86   #:use-module (guix gexp)
  87   #:use-module (guix git-download)
  88   #:use-module ((guix licenses) #:prefix license:)
  89   #:use-module (guix packages)
  90   #:use-module (guix utils)
  91   #:use-module (ice-9 match)
  92   #:use-module (srfi srfi-1))
  93
  94 (define (boot-guile-uri arch)
  95   "Return the URI for the bootstrap Guile tarball for ARCH."
  96   (cond ((string=? "armhf" arch)
  97          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  98                         arch "-linux"
  99                         "/20150101/guile-2.0.11.tar.xz"))
 100         ((string=? "aarch64" arch)
 101          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 102                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 103         (else
 104          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 105                         arch "-linux"
 106                         "/20131110/guile-2.0.9.tar.xz"))))
 107
 108 (define-public guix
 109   ;; Latest version of Guix, which may or may not correspond to a release.
 110   ;; Note: the 'update-guix-package.scm' script expects this definition to
 111   ;; start precisely like this.
 112   (let ((version "0.16.0")
 113         (commit "f970946c1d3dc6d20bd48ec6f42c82a43bb7696f")
 114         (revision 11))
 115     (package
 116       (name "guix")
 117
 118       (version (if (zero? revision)
 119                    version
 120                    (string-append version "-"
 121                                   (number->string revision)
 122                                   "." (string-take commit 7))))
 123       (source (origin
 124                 (method git-fetch)
 125                 (uri (git-reference
 126                       (url "https://git.savannah.gnu.org/r/guix.git")
 127                       (commit commit)))
 128                 (sha256
 129                  (base32
 130                   "0v7qj2i9n52l1di8vk15nqdrlapfc22pcf5jl56fp4mqpq48ddrj"))
 131                 (file-name (string-append "guix-" version "-checkout"))))
 132       (build-system gnu-build-system)
 133       (arguments
 134        `(#:configure-flags (list
 135                             "--localstatedir=/var"
 136                             "--sysconfdir=/etc"
 137                             (string-append "--with-bash-completion-dir="
 138                                            (assoc-ref %outputs "out")
 139                                            "/etc/bash_completion.d")
 140                             (string-append "--with-libgcrypt-prefix="
 141                                            (assoc-ref %build-inputs
 142                                                       "libgcrypt"))
 143
 144                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 145                             ;; we don't keep a reference to Graphviz, whose
 146                             ;; closure is pretty big (too big for the Guix
 147                             ;; system installation image.)
 148                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 149
 150                             ;; To avoid problems with the length of shebangs,
 151                             ;; choose a fixed-width and short directory name
 152                             ;; for tests.
 153                             "ac_cv_guix_test_root=/tmp/guix-tests")
 154          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 155
 156          #:modules ((guix build gnu-build-system)
 157                     (guix build utils)
 158                     (srfi srfi-26)
 159                     (ice-9 popen)
 160                     (ice-9 rdelim))
 161
 162          #:phases (modify-phases %standard-phases
 163                     (replace 'bootstrap
 164                       (lambda _
 165                         ;; Make sure 'msgmerge' can modify the PO files.
 166                         (for-each (lambda (po)
 167                                     (chmod po #o666))
 168                                   (find-files "." "\\.po$"))
 169
 170                         (patch-shebang "build-aux/git-version-gen")
 171
 172                         (call-with-output-file ".tarball-version"
 173                           (lambda (port)
 174                             (display ,version port)))
 175
 176                         (invoke "sh" "bootstrap")))
 177                     (add-before 'check 'copy-bootstrap-guile
 178                       (lambda* (#:key system inputs #:allow-other-keys)
 179                         ;; Copy the bootstrap guile tarball in the store used
 180                         ;; by the test suite.
 181                         (define (intern tarball)
 182                           (let ((base (strip-store-file-name tarball)))
 183                             (copy-file tarball base)
 184                             (invoke "./test-env" "guix" "download"
 185                                     (string-append "file://" (getcwd)
 186                                                    "/" base))
 187                             (delete-file base)))
 188
 189
 190                         (intern (assoc-ref inputs "boot-guile"))
 191
 192                         ;; On x86_64 some tests need the i686 Guile.
 193                         ,@(if (and (not (%current-target-system))
 194                                    (string=? (%current-system)
 195                                              "x86_64-linux"))
 196                               '((intern (assoc-ref inputs "boot-guile/i686")))
 197                               '())
 198                         #t))
 199                     (add-after 'unpack 'disable-failing-tests
 200                       ;; XXX FIXME: These tests fail within the build container.
 201                       (lambda _
 202                         (substitute* "tests/syscalls.scm"
 203                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 204                            (string-append "(test-skip 1)\n" all)))
 205                         (substitute* "tests/containers.scm"
 206                           (("^\\(test-(assert|equal)" all)
 207                            (string-append "(test-skip 1)\n" all)))
 208                         (when (file-exists? "tests/guix-environment-container.sh")
 209                           (substitute* "tests/guix-environment-container.sh"
 210                             (("guix environment --version")
 211                              "exit 77\n")))
 212                         #t))
 213                     (add-before 'check 'set-SHELL
 214                       (lambda _
 215                         ;; 'guix environment' tests rely on 'SHELL' having a
 216                         ;; correct value, so set it.
 217                         (setenv "SHELL" (which "sh"))
 218                         #t))
 219                     (add-after 'install 'wrap-program
 220                       (lambda* (#:key inputs outputs #:allow-other-keys)
 221                         ;; Make sure the 'guix' command finds GnuTLS,
 222                         ;; Guile-JSON, and Guile-Git automatically.
 223                         (let* ((out    (assoc-ref outputs "out"))
 224                                (guile  (assoc-ref inputs "guile"))
 225                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 226                                (json   (assoc-ref inputs "guile-json"))
 227                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 228                                (git    (assoc-ref inputs "guile-git"))
 229                                (bs     (assoc-ref inputs
 230                                                   "guile-bytestructures"))
 231                                (ssh    (assoc-ref inputs "guile-ssh"))
 232                                (gnutls (assoc-ref inputs "gnutls"))
 233                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 234                                (deps   (list gcrypt json sqlite gnutls
 235                                              git bs ssh))
 236                                (effective
 237                                 (read-line
 238                                  (open-pipe* OPEN_READ
 239                                              (string-append guile "/bin/guile")
 240                                              "-c" "(display (effective-version))")))
 241                                (path   (string-join
 242                                         (map (cut string-append <>
 243                                                   "/share/guile/site/"
 244                                                   effective)
 245                                              (delete #f deps))
 246                                         ":"))
 247                                (gopath (string-join
 248                                         (map (cut string-append <>
 249                                                   "/lib/guile/" effective
 250                                                   "/site-ccache")
 251                                              (delete #f deps))
 252                                         ":"))
 253                                (locpath (string-append locales "/lib/locale")))
 254
 255                           (wrap-program (string-append out "/bin/guix")
 256                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 257                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 258                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 259
 260                           #t))))))
 261       (native-inputs `(("pkg-config" ,pkg-config)
 262
 263                        ;; XXX: Keep the development inputs here even though
 264                        ;; they're unnecessary, just so that 'guix environment
 265                        ;; guix' always contains them.
 266                        ("autoconf" ,autoconf-wrapper)
 267                        ("automake" ,automake)
 268                        ("gettext" ,gettext-minimal)
 269                        ("texinfo" ,texinfo)
 270                        ("graphviz" ,graphviz)
 271                        ("help2man" ,help2man)
 272                        ("po4a" ,po4a)))
 273       (inputs
 274        `(("bzip2" ,bzip2)
 275          ("gzip" ,gzip)
 276          ("zlib" ,zlib)                           ;for 'guix publish'
 277
 278          ("sqlite" ,sqlite)
 279          ("libgcrypt" ,libgcrypt)
 280
 281          ("guile" ,guile-2.2)
 282
 283          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 284          ;; have it here.
 285          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 286          ;; Some of the tests use "unshare" when it is available.
 287          ("util-linux" ,util-linux)
 288          ,@(if (and (not (%current-target-system))
 289                     (string=? (%current-system) "x86_64-linux"))
 290                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 291                '())
 292
 293          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 294       (propagated-inputs
 295        `(("gnutls" ,gnutls)
 296          ("guile-gcrypt" ,guile-gcrypt)
 297          ("guile-json" ,guile-json)
 298          ("guile-sqlite3" ,guile-sqlite3)
 299          ("guile-ssh" ,guile-ssh)
 300          ("guile-git" ,guile-git)))
 301
 302       (home-page "https://www.gnu.org/software/guix/")
 303       (synopsis "Functional package manager for installed software packages and versions")
 304       (description
 305        "GNU Guix is a functional package manager for the GNU system, and is
 306 also a distribution thereof.  It includes a virtual machine image.  Besides
 307 the usual package management features, it also supports transactional
 308 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 309 the Nix package manager.")
 310       (license license:gpl3+)
 311       (properties '((ftp-server . "alpha.gnu.org"))))))
 312
 313 (define-public guix-daemon
 314   ;; This package is for internal consumption: it allows us to quickly build
 315   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 316   ;; pull'.
 317   (package
 318     (inherit guix)
 319     (properties `((hidden? . #t)))
 320     (name "guix-daemon")
 321
 322     ;; Use a minimum set of dependencies.
 323     (native-inputs
 324      (fold alist-delete (package-native-inputs guix)
 325            '("po4a" "graphviz" "help2man")))
 326     (inputs
 327      `(("gnutls" ,gnutls)
 328        ("guile-git" ,guile-git)
 329        ("guile-json" ,guile-json)
 330        ("guile-gcrypt" ,guile-gcrypt)
 331        ,@(fold alist-delete (package-inputs guix)
 332                '("boot-guile" "boot-guile/i686" "util-linux"))))
 333
 334     (propagated-inputs '())
 335
 336     (arguments
 337      (substitute-keyword-arguments (package-arguments guix)
 338        ((#:configure-flags flags '())
 339         ;; Pretend we have those libraries; we don't actually need them.
 340         `(append ,flags
 341                  '("guix_cv_have_recent_guile_sqlite3=yes"
 342                    "guix_cv_have_recent_guile_ssh=yes")))
 343        ((#:tests? #f #f)
 344         #f)
 345        ((#:phases phases '%standard-phases)
 346         `(modify-phases ,phases
 347            (replace 'build
 348              (lambda _
 349                (invoke "make" "nix/libstore/schema.sql.hh")
 350                (invoke "make" "-j" (number->string
 351                                     (parallel-job-count))
 352                        "guix-daemon")))
 353            (delete 'copy-bootstrap-guile)
 354            (replace 'install
 355              (lambda* (#:key outputs #:allow-other-keys)
 356                (invoke "make" "install-binPROGRAMS"
 357                        "install-nodist_pkglibexecSCRIPTS")
 358
 359                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 360                ;; Here we use a questionable hack where we hard-code root's
 361                ;; current guix, which could be wrong (XXX).  Note that scripts
 362                ;; like 'guix perform-download' do not run as root so we assume
 363                ;; that they have access to /var/guix/profiles/per-user/root.
 364                (let ((out (assoc-ref outputs "out")))
 365                  (substitute* (find-files (string-append out "/libexec"))
 366                    (("exec \".*/bin/guix\"")
 367                     "exec \"${GUIX:-/var/guix/profiles/per-user/root/current-guix/bin/guix}\""))
 368                  #t)))
 369            (delete 'wrap-program)))))))
 370
 371 (define-public guile2.0-guix
 372   (deprecated-package "guile2.0-guix" guix))
 373
 374 (define-public guix-minimal
 375   ;; A version of Guix which is built with the minimal set of dependencies, as
 376   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 377   ;; marked as hidden.
 378   (hidden-package
 379    (package
 380      (inherit guix)
 381      (name "guix-minimal")
 382      (inputs
 383       `(("guile" ,guile-2.2)
 384         ,@(alist-delete "guile" (package-inputs guix))))
 385      (propagated-inputs
 386       (fold alist-delete
 387             (package-propagated-inputs guix)
 388             '("guile-ssh"))))))
 389
 390 (define (source-file? file stat)
 391   "Return true if FILE is likely a source file, false if it is a typical
 392 generated file."
 393   (define (wrong-extension? file)
 394     (or (string-suffix? "~" file)
 395         (member (file-extension file)
 396                 '("o" "a" "lo" "so" "go"))))
 397
 398   (match (basename file)
 399     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 400      #f)
 401     ((? wrong-extension?)
 402      #f)
 403     (_
 404      #t)))
 405
 406 (define-public current-guix-package
 407   ;; This parameter allows callers to override the package that 'current-guix'
 408   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 409   ;; for instance because it's not running from a source code checkout.
 410   (make-parameter #f))
 411
 412 (define-public current-guix
 413   (let* ((repository-root (delay (canonicalize-path
 414                                   (string-append (current-source-directory)
 415                                                  "/../.."))))
 416          (select? (delay (or (git-predicate (force repository-root))
 417                              source-file?))))
 418     (lambda ()
 419       "Return a package representing Guix built from the current source tree.
 420 This works by adding the current source tree to the store (after filtering it
 421 out) and returning a package that uses that as its 'source'."
 422       (or (current-guix-package)
 423           (package
 424             (inherit guix)
 425             (version (string-append (package-version guix) "+"))
 426             (source (local-file (force repository-root) "guix-current"
 427                                 #:recursive? #t
 428                                 #:select? (force select?))))))))
 429
 430 \f
 431 ;;;
 432 ;;; Other tools.
 433 ;;;
 434
 435 (define-public nix
 436   (package
 437     (name "nix")
 438     (version "2.0.4")
 439     (source (origin
 440              (method url-fetch)
 441              (uri (string-append "http://nixos.org/releases/nix/nix-"
 442                                  version "/nix-" version ".tar.xz"))
 443              (sha256
 444               (base32
 445                "0ss9svxlh1pvrdmnqjvjyqjmbqmrdbyfarvbb14i9d4bggzl0r8n"))))
 446     (build-system gnu-build-system)
 447     (native-inputs `(("pkg-config" ,pkg-config)))
 448     (inputs `(("curl" ,curl)
 449               ("bzip2" ,bzip2)
 450               ("libgc" ,libgc)
 451               ("libseccomp" ,libseccomp)
 452               ("libsodium" ,libsodium)
 453               ("openssl" ,openssl)
 454               ("sqlite" ,sqlite)
 455               ("xz" ,xz)))
 456     (home-page "https://nixos.org/nix/")
 457     (synopsis "The Nix package manager")
 458     (description
 459      "Nix is a purely functional package manager.  This means that it treats
 460 packages like values in purely functional programming languages such as
 461 Haskell—they are built by functions that don't have side-effects, and they
 462 never change after they have been built.  Nix stores packages in the Nix
 463 store, usually the directory /nix/store, where each package has its own unique
 464 sub-directory.")
 465     (license license:lgpl2.1+)))
 466
 467 (define-public stow
 468   (package
 469     (name "stow")
 470     (version "2.2.2")
 471     (source (origin
 472               (method url-fetch)
 473               (uri (string-append "mirror://gnu/stow/stow-"
 474                                   version ".tar.gz"))
 475               (sha256
 476                (base32
 477                 "1pvky9fayms4r6fhns8jd0vavszd7d979w62vfd5n88v614pdxz2"))))
 478     (build-system gnu-build-system)
 479     (inputs
 480      `(("perl" ,perl)))
 481     (native-inputs
 482      `(("perl-test-simple" ,perl-test-simple)
 483        ("perl-test-output" ,perl-test-output)
 484        ("perl-capture-tiny" ,perl-capture-tiny)
 485        ("perl-io-stringy" ,perl-io-stringy)))
 486     (home-page "https://www.gnu.org/software/stow/")
 487     (synopsis "Managing installed software packages")
 488     (description
 489      "GNU Stow is a symlink manager.  It generates symlinks to directories
 490 of data and makes them appear to be merged into the same directory.  It is
 491 typically used for managing software packages installed from source, by
 492 letting you install them apart in distinct directories and then create
 493 symlinks to the files in a common directory such as /usr/local.")
 494     (license license:gpl2+)))
 495
 496 (define-public rpm
 497   (package
 498     (name "rpm")
 499     (version "4.14.2")
 500     (source (origin
 501               (method url-fetch)
 502               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 503                                   (version-major+minor version) ".x/rpm-"
 504                                   version ".tar.bz2"))
 505               (sha256
 506                (base32
 507                 "0armd7dqr8bl0isx8l4xlylm7dikasmxhhcbz336fkp2x30w5jw0"))))
 508     (build-system gnu-build-system)
 509     (arguments
 510      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 511                            "--enable-python"
 512                            "--without-lua")
 513        #:phases (modify-phases %standard-phases
 514                   (add-before 'configure 'set-nss-library-path
 515                     (lambda* (#:key inputs #:allow-other-keys)
 516                       (let ((nss (assoc-ref inputs "nss")))
 517                         (setenv "LIBRARY_PATH"
 518                                 (string-append (getenv "LIBRARY_PATH") ":"
 519                                                nss "/lib/nss"))
 520                         #t))))))
 521     (native-inputs
 522      `(("pkg-config" ,pkg-config)))
 523     (inputs
 524      `(("python" ,python-2)
 525        ("xz" ,xz)
 526        ("bdb" ,bdb)
 527        ("popt" ,popt)
 528        ("nss" ,nss)
 529        ("nspr" ,nspr)
 530        ("libarchive" ,libarchive)
 531        ("nettle" ,nettle)            ;XXX: actually a dependency of libarchive
 532        ("file" ,file)
 533        ("bzip2" ,bzip2)
 534        ("zlib" ,zlib)
 535        ("cpio" ,cpio)))
 536     (home-page "http://rpm.org/")
 537     (synopsis "The RPM Package Manager")
 538     (description
 539      "The RPM Package Manager (RPM) is a command-line driven package
 540 management system capable of installing, uninstalling, verifying, querying,
 541 and updating computer software packages.  Each software package consists of an
 542 archive of files along with information about the package like its version, a
 543 description.  There is also a library permitting developers to manage such
 544 transactions from C or Python.")
 545
 546     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 547     (license license:gpl2+)))
 548
 549 (define-public diffoscope
 550   (package
 551     (name "diffoscope")
 552     (version "113")
 553     (source (origin
 554               (method url-fetch)
 555               (uri (pypi-uri name version))
 556               (sha256
 557                (base32
 558                 "10wjri6vsqxf2nb7jjhsq38qlpf407b4qrdczrk696aa1v71i44w"))))
 559     (build-system python-build-system)
 560     (arguments
 561      `(#:phases (modify-phases %standard-phases
 562                   ;; setup.py mistakenly requires python-magic from PyPi, even
 563                   ;; though the Python bindings of `file` are sufficient.
 564                   ;; https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815844
 565                   (add-after 'unpack 'dependency-on-python-magic
 566                     (lambda _
 567                       (substitute* "setup.py"
 568                         (("'python-magic',") ""))))
 569                   ;; This test is broken because our `file` package has a
 570                   ;; bug in berkeley-db file type detection.
 571                   (add-after 'unpack 'remove-berkeley-test
 572                     (lambda _
 573                       (delete-file "tests/comparators/test_berkeley_db.py")
 574                       #t))
 575                   (add-after 'unpack 'embed-tool-references
 576                     (lambda* (#:key inputs #:allow-other-keys)
 577                       (substitute* "diffoscope/comparators/utils/compare.py"
 578                         (("\\['xxd',")
 579                          (string-append "['" (which "xxd") "',")))
 580                       (substitute* "diffoscope/comparators/elf.py"
 581                         (("@tool_required\\('readelf'\\)") "")
 582                         (("get_tool_name\\('readelf'\\)")
 583                          (string-append "'" (which "readelf") "'")))
 584                       (substitute* "diffoscope/comparators/directory.py"
 585                         (("@tool_required\\('stat'\\)") "")
 586                         (("@tool_required\\('getfacl'\\)") "")
 587                         (("\\['stat',")
 588                          (string-append "['" (which "stat") "',"))
 589                         (("\\['getfacl',")
 590                          (string-append "['" (which "getfacl") "',")))
 591                       #t))
 592                   (add-before 'check 'delete-failing-test
 593                     (lambda _
 594                       (delete-file "tests/test_tools.py") ;this requires /sbin to be on the path
 595                       #t)))))
 596     (inputs `(("rpm" ,rpm)                        ;for rpm-python
 597               ("python-file" ,python-file)
 598               ("python-debian" ,python-debian)
 599               ("python-libarchive-c" ,python-libarchive-c)
 600               ("python-tlsh" ,python-tlsh)
 601               ("acl" ,acl)                        ;for getfacl
 602               ("colordiff" ,colordiff)
 603               ("xxd" ,xxd)
 604
 605               ;; Below are modules used for tests.
 606               ("python-pytest" ,python-pytest)
 607               ("python-chardet" ,python-chardet)))
 608     (home-page "https://diffoscope.org/")
 609     (synopsis "Compare files, archives, and directories in depth")
 610     (description
 611      "Diffoscope tries to get to the bottom of what makes files or directories
 612 different.  It recursively unpacks archives of many kinds and transforms
 613 various binary formats into more human readable forms to compare them.  It can
 614 compare two tarballs, ISO images, or PDFs just as easily.")
 615     (license license:gpl3+)))
 616
 617 (define-public trydiffoscope
 618  (package
 619    (name "trydiffoscope")
 620    (version "67.0.1")
 621    (source
 622     (origin
 623       (method git-fetch)
 624       (uri (git-reference
 625             (url "https://salsa.debian.org/reproducible-builds/trydiffoscope.git")
 626             (commit version)))
 627       (file-name (git-file-name name version))
 628       (sha256
 629        (base32
 630         "03b66cjii7l2yiwffj6ym6mycd5drx7prfp4j2550281pias6mjh"))))
 631     (arguments
 632      `(#:phases
 633        (modify-phases %standard-phases
 634          (add-after 'install 'install-doc
 635            (lambda* (#:key outputs #:allow-other-keys)
 636              (let* ((share (string-append (assoc-ref outputs "out") "/share/")))
 637                (mkdir-p (string-append share "/man/man1/" ))
 638                (invoke "rst2man.py"
 639                        "trydiffoscope.1.rst"
 640                        (string-append share "/man/man1/trydiffoscope.1"))
 641                (mkdir-p (string-append share "/doc/" ,name "-" ,version))
 642                (install-file "./README.rst"
 643                           (string-append share "/doc/" ,name "-" ,version)))
 644              #t)))))
 645     (propagated-inputs
 646      `(("python-requests" ,python-requests)))
 647     (native-inputs
 648      `(("gzip" ,gzip)
 649        ("python-docutils" ,python-docutils)))
 650     (build-system python-build-system)
 651     (home-page "https://try.diffoscope.org")
 652     (synopsis "Client for remote diffoscope service")
 653     (description "This is a client for the @url{https://try.diffoscope.org,
 654 remote diffoscope service}.
 655
 656 Diffoscope tries to get to the bottom of what makes files or directories
 657 different.  It recursively unpacks archives of many kinds and transforms
 658 various binary formats into more human readable forms to compare them.  It can
 659 compare two tarballs, ISO images, or PDFs just as easily.
 660
 661 Results are displayed by default, stored as local text or html files, or made
 662 available via a URL on @url{https://try.diffoscope.org}.  Results stored on the
 663 server are purged after 30 days.")
 664     (license license:gpl3+)))
 665
 666 (define-public python-anaconda-client
 667   (package
 668     (name "python-anaconda-client")
 669     (version "1.6.3")
 670     (source
 671      (origin
 672        (method url-fetch)
 673        (uri (string-append "https://github.com/Anaconda-Platform/"
 674                            "anaconda-client/archive/" version ".tar.gz"))
 675        (file-name (string-append name "-" version ".tar.gz"))
 676        (sha256
 677         (base32
 678          "1wv4wi6k5jz7rlwfgvgfdizv77x3cr1wa2aj0k1595g7fbhkjhz2"))))
 679     (build-system python-build-system)
 680     (propagated-inputs
 681      `(("python-pyyaml" ,python-pyyaml)
 682        ("python-requests" ,python-requests)
 683        ("python-clyent" ,python-clyent)))
 684     (native-inputs
 685      `(("python-pytz" ,python-pytz)
 686        ("python-dateutil" ,python-dateutil)
 687        ("python-mock" ,python-mock)
 688        ("python-coverage" ,python-coverage)
 689        ("python-pillow" ,python-pillow)))
 690     (arguments
 691      `(#:phases
 692        (modify-phases %standard-phases
 693          ;; This is needed for some tests.
 694          (add-before 'check 'set-up-home
 695            (lambda* _ (setenv "HOME" "/tmp") #t))
 696          (add-before 'check 'remove-network-tests
 697            (lambda* _
 698              ;; Remove tests requiring a network connection
 699              (let ((network-tests '("tests/test_upload.py"
 700                                     "tests/test_authorizations.py"
 701                                     "tests/test_login.py"
 702                                     "tests/test_whoami.py"
 703                                     "utils/notebook/tests/test_data_uri.py"
 704                                     "utils/notebook/tests/test_base.py"
 705                                     "utils/notebook/tests/test_downloader.py"
 706                                     "inspect_package/tests/test_conda.py")))
 707                (with-directory-excursion "binstar_client"
 708                  (for-each delete-file network-tests)))
 709              #t)))))
 710     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 711     (synopsis "Anaconda Cloud command line client library")
 712     (description
 713      "Anaconda Cloud command line client library provides an interface to
 714 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 715 environments.")
 716     (license license:bsd-3)))
 717
 718 (define-public python2-anaconda-client
 719   (package-with-python2 python-anaconda-client))
 720
 721 (define-public python-conda
 722   (package
 723     (name "python-conda")
 724     (version "4.3.16")
 725     (source
 726      (origin
 727        (method url-fetch)
 728        (uri (string-append "https://github.com/conda/conda/archive/"
 729                            version ".tar.gz"))
 730        (file-name (string-append name "-" version ".tar.gz"))
 731        (sha256
 732         (base32
 733          "1jq8hyrc5npb5sf4vw6s6by4602yj8f79vzpbwdfgpkn02nfk1dv"))))
 734     (build-system python-build-system)
 735     (arguments
 736      `(#:phases
 737        (modify-phases %standard-phases
 738          (add-before 'build 'create-version-file
 739            (lambda _
 740              (with-output-to-file "conda/.version"
 741                (lambda () (display ,version)))
 742              #t))
 743          (add-before 'check 'remove-failing-tests
 744            (lambda _
 745              ;; These tests require internet/network access
 746              (let ((network-tests '("test_cli.py"
 747                                     "test_create.py"
 748                                     "test_export.py"
 749                                     "test_fetch.py"
 750                                     "test_history.py"
 751                                     "test_info.py"
 752                                     "test_install.py"
 753                                     "test_priority.py"
 754                                     "conda_env/test_cli.py"
 755                                     "conda_env/test_create.py"
 756                                     "conda_env/specs/test_notebook.py"
 757                                     "conda_env/utils/test_notebooks.py"
 758                                     "core/test_index.py"
 759                                     "core/test_repodata.py")))
 760                (with-directory-excursion "tests"
 761                  (for-each delete-file network-tests)
 762
 763                  ;; FIXME: This test creates a file, then deletes it and tests
 764                  ;; that the file was deleted.  For some reason it fails when
 765                  ;; building with guix, but does not when you run it in the
 766                  ;; directory left when you build with the --keep-failed
 767                  ;; option
 768                  (delete-file "gateways/disk/test_delete.py")
 769                  #t))))
 770          (replace 'check
 771            (lambda _
 772              (setenv "HOME" "/tmp")
 773              (invoke "py.test"))))))
 774     (native-inputs
 775      `(("python-cytoolz" ,python-cytoolz)
 776        ("python-ruamel.yaml" ,python-ruamel.yaml)
 777        ("python-requests" ,python-requests)
 778        ("python-pycosat" ,python-pycosat)
 779        ("python-pytest" ,python-pytest)
 780        ("python-responses" ,python-responses)
 781        ("python-pyyaml" ,python-pyyaml)
 782        ("python-anaconda-client" ,python-anaconda-client)))
 783     (home-page "https://github.com/conda/conda")
 784     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 785     (description
 786      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 787 is the package manager used by Anaconda installations, but it may be used for
 788 other systems as well.  Conda makes environments first-class citizens, making
 789 it easy to create independent environments even for C libraries.  Conda is
 790 written entirely in Python.
 791
 792 This package provides Conda as a library.")
 793     (license license:bsd-3)))
 794
 795 (define-public python2-conda
 796   (let ((base (package-with-python2
 797                (strip-python2-variant python-conda))))
 798     (package (inherit base)
 799              (native-inputs
 800               `(("python2-enum34" ,python2-enum34)
 801                 ,@(package-native-inputs base))))))
 802
 803 (define-public conda
 804   (package (inherit python-conda)
 805     (name "conda")
 806     (arguments
 807      (substitute-keyword-arguments (package-arguments python-conda)
 808        ((#:phases phases)
 809         `(modify-phases ,phases
 810            (replace 'build
 811              (lambda* (#:key outputs #:allow-other-keys)
 812                ;; This test fails when run before installation.
 813                (delete-file "tests/test_activate.py")
 814
 815                ;; Fix broken defaults
 816                (substitute* "conda/base/context.py"
 817                  (("return sys.prefix")
 818                   (string-append "return \"" (assoc-ref outputs "out") "\""))
 819                  (("return (prefix_is_writable\\(self.root_prefix\\))" _ match)
 820                   (string-append "return False if self.root_prefix == self.conda_prefix else "
 821                                  match)))
 822
 823                ;; The util/setup-testing.py is used to build conda in
 824                ;; application form, rather than the default, library form.
 825                ;; With this, we are able to run commands like `conda --help`
 826                ;; directly on the command line
 827                (invoke "python" "utils/setup-testing.py" "build_py")))
 828            (replace 'install
 829              (lambda* (#:key inputs outputs #:allow-other-keys)
 830                (let* ((out (assoc-ref outputs "out"))
 831                       (target (string-append out "/lib/python"
 832                                              ((@@ (guix build python-build-system)
 833                                                   get-python-version)
 834                                               (assoc-ref inputs "python"))
 835                                              "/site-packages/")))
 836                  ;; The installer aborts if the target directory is not on
 837                  ;; PYTHONPATH.
 838                  (setenv "PYTHONPATH"
 839                          (string-append target ":" (getenv "PYTHONPATH")))
 840
 841                  ;; And it aborts if the directory doesn't exist.
 842                  (mkdir-p target)
 843                  (invoke "python" "utils/setup-testing.py" "install"
 844                          (string-append "--prefix=" out)))))
 845            ;; The "activate" and "deactivate" scripts don't need wrapping.
 846            ;; They also break when they are renamed.
 847            (add-after 'wrap 'undo-wrap
 848              (lambda* (#:key outputs #:allow-other-keys)
 849                (with-directory-excursion (string-append (assoc-ref outputs "out") "/bin/")
 850                  (delete-file "deactivate")
 851                  (rename-file ".deactivate-real" "deactivate")
 852                  (delete-file "activate")
 853                  (rename-file ".activate-real" "activate")
 854                  #t)))))))
 855     (description
 856      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 857 is the package manager used by Anaconda installations, but it may be used for
 858 other systems as well.  Conda makes environments first-class citizens, making
 859 it easy to create independent environments even for C libraries.  Conda is
 860 written entirely in Python.")))
 861
 862 (define-public gwl
 863   (package
 864     (name "gwl")
 865     (version "0.1.1")
 866     (source (origin
 867               (method url-fetch)
 868               (uri (string-append "https://www.guixwl.org/releases/gwl-"
 869                                   version ".tar.gz"))
 870               (sha256
 871                (base32
 872                 "06pm967mq1wyggx7l0nfapw5s0k5qc5r9lawk2v3db868br779a7"))))
 873     (build-system gnu-build-system)
 874     (native-inputs
 875      `(("autoconf" ,autoconf)
 876        ("automake" ,automake)
 877        ("pkg-config" ,pkg-config)))
 878     (inputs
 879      `(("guile" ,guile-2.2)))
 880     (propagated-inputs
 881      `(("guix" ,guix)
 882        ("guile-commonmark" ,guile-commonmark)))
 883     (home-page "https://www.guixwl.org")
 884     (synopsis "Workflow management extension for GNU Guix")
 885     (description "This project provides two subcommands to GNU Guix and
 886 introduces two record types that provide a workflow management extension built
 887 on top of GNU Guix.")
 888     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 889     ;; the web interface modules in gwl/ are licensed AGPL3+,
 890     ;; and the fonts included in this package are licensed OFL1.1.
 891     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 892
 893 (define-public gcab
 894   (package
 895     (name "gcab")
 896     (version "1.2")
 897     (source (origin
 898               (method url-fetch)
 899               (uri (string-append "mirror://gnome/sources/gcab/"
 900                                   version "/gcab-" version ".tar.xz"))
 901               (sha256
 902                (base32
 903                 "038h5kk41si2hc9d9169rrlvp8xgsxq27kri7hv2vr39gvz9cbas"))))
 904     (build-system meson-build-system)
 905     (native-inputs
 906      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
 907        ("intltool" ,intltool)
 908        ("pkg-config" ,pkg-config)
 909        ("vala" ,vala)))
 910     (inputs
 911      `(("glib" ,glib)
 912        ("zlib" ,zlib)))
 913     (arguments
 914      `(#:configure-flags
 915        ;; XXX This ‘documentation’ is for developers, and fails informatively:
 916        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
 917        (list "-Ddocs=false"
 918              "-Dintrospection=false")))
 919     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
 920     (synopsis "Microsoft Cabinet file manipulation library")
 921     (description
 922      "The libgcab library provides GObject functions to read, write, and modify
 923 Microsoft cabinet (.@dfn{CAB}) files.")
 924     (license (list license:gpl2+        ; tests/testsuite.at
 925                    license:lgpl2.1+)))) ; the rest
 926
 927 (define-public msitools
 928   (package
 929     (name "msitools")
 930     (version "0.99")
 931     (source (origin
 932               (method url-fetch)
 933               (uri (string-append "mirror://gnome/sources/msitools/"
 934                                   version "/msitools-" version ".tar.xz"))
 935               (sha256
 936                (base32
 937                 "0d9nidn5zc81bc30w119933rn2g87mrsqyqkndg20srkbsd96xfl"))))
 938     (build-system gnu-build-system)
 939     (native-inputs
 940      `(("bison" ,bison)
 941        ("pkg-config" ,pkg-config)))
 942     (inputs
 943      `(("gcab" ,gcab)
 944        ("glib" ,glib)
 945        ("libgsf" ,libgsf)
 946        ("libxml2" ,libxml2)
 947        ("uuid" ,util-linux)))
 948     (home-page "https://wiki.gnome.org/msitools")
 949     (synopsis "Windows Installer file manipulation tool")
 950     (description
 951      "msitools is a collection of command-line tools to inspect, extract, build,
 952 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
 953 for packaging and deployment of cross-compiled Windows applications.")
 954     (license license:lgpl2.1+)))
 955
 956 (define-public libostree
 957   (package
 958     (name "libostree")
 959     (version "2018.9.1")
 960     (source (origin
 961               (method url-fetch)
 962               (uri (string-append
 963                     "https://github.com/ostreedev/ostree/releases/download/v"
 964                     (version-major+minor version) "/libostree-" version ".tar.xz"))
 965               (sha256
 966                (base32
 967                 "01mygpkbl9sk2vr3hjbpih6qlg8lwx0q5lklm09f7jfwfpnwyqzj"))))
 968     (build-system gnu-build-system)
 969     (arguments
 970      '(#:phases
 971        (modify-phases %standard-phases
 972          (add-before 'check 'pre-check
 973            (lambda _
 974              ;; Don't try to use the non-existing '/var/tmp' as test
 975              ;; directory.
 976              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
 977              #t)))
 978        ;; XXX: fails with:
 979        ;;     tap-driver.sh: internal error getting exit status
 980        ;;     tap-driver.sh: fatal: I/O or internal error
 981        #:tests? #f))
 982     (native-inputs
 983      `(("attr" ,attr)                   ; for tests
 984        ("bison" ,bison)
 985        ("glib:bin" ,glib "bin")          ; for 'glib-mkenums'
 986        ("gobject-introspection" ,gobject-introspection)
 987        ("pkg-config" ,pkg-config)
 988        ("xsltproc" ,libxslt)))
 989     (inputs
 990      `(("avahi" ,avahi)
 991        ("docbook-xml" ,docbook-xml-4.2)
 992        ("docbook-xsl" ,docbook-xsl)
 993        ("e2fsprogs" ,e2fsprogs)
 994        ("fuse" ,fuse)
 995        ("glib" ,glib)
 996        ("gpgme" ,gpgme)
 997        ("libarchive" ,libarchive)
 998        ("libsoup" ,libsoup)
 999        ("nettle" ,nettle)               ; required by 'libarchive.la'
1000        ("util-linux" ,util-linux)))
1001     (home-page "https://ostree.readthedocs.io/en/latest/")
1002     (synopsis "Operating system and container binary deployment and upgrades")
1003     (description
1004      "@code{libostree} is both a shared library and suite of command line
1005 tools that combines a \"git-like\" model for committing and downloading
1006 bootable filesystem trees, along with a layer for deploying them and managing
1007 the bootloader configuration.")
1008     (license license:lgpl2.0+)))
1009
1010 (define-public flatpak
1011   (package
1012    (name "flatpak")
1013    (version "1.2.4")
1014    (source
1015     (origin
1016      (method url-fetch)
1017      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1018                          version "/flatpak-" version ".tar.xz"))
1019      (sha256
1020       (base32
1021        "1qf3ys84fzv11z6f6li59rxjdjbyrv7cyi9539k73r9i9pckjr8v"))))
1022
1023    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1024    ;; find the TLS backend in glib-networking.
1025    (build-system glib-or-gtk-build-system)
1026
1027    (arguments
1028     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
1029       #:configure-flags (list
1030                          "--enable-documentation=no" ;; FIXME
1031                          "--enable-system-helper=no"
1032                          "--localstatedir=/var"
1033                          (string-append "--with-system-bubblewrap="
1034                                         (assoc-ref %build-inputs "bubblewrap")
1035                                         "/bin/bwrap"))))
1036    (native-inputs `(("bison" ,bison)
1037                     ("gettext" ,gnu-gettext)
1038                     ("glib:bin" ,glib "bin") ; for glib-mkenums + gdbus-codegen
1039                     ("gobject-introspection" ,gobject-introspection)
1040                     ("libcap" ,libcap)
1041                     ("pkg-config" ,pkg-config)))
1042    (propagated-inputs `(("glib-networking" ,glib-networking)
1043                         ("gnupg" ,gnupg)
1044                         ("gsettings-desktop-schemas"
1045                          ,gsettings-desktop-schemas)))
1046    (inputs `(("appstream-glib" ,appstream-glib)
1047              ("bubblewrap" ,bubblewrap)
1048              ("dconf" ,dconf)
1049              ("gdk-pixbuf" ,gdk-pixbuf)
1050              ("gpgme" ,gpgme)
1051              ("json-glib" ,json-glib)
1052              ("libarchive" ,libarchive)
1053              ("libostree" ,libostree)
1054              ("libseccomp" ,libseccomp)
1055              ("libsoup" ,libsoup)
1056              ("libxau" ,libxau)
1057              ("libxml2" ,libxml2)
1058              ("nettle" ,nettle)
1059              ("util-linux" ,util-linux)))
1060    (home-page "https://flatpak.org")
1061    (synopsis "System for building, distributing, and running sandboxed desktop
1062 applications")
1063    (description "Flatpak is a system for building, distributing, and running
1064 sandboxed desktop applications on GNU/Linux.")
1065    (license license:lgpl2.1+)))