gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017, 2020 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018, 2019 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
  14 ;;; Copyright © 2020 Mathieu Othacehe <m.othacehe@gmail.com>
  15 ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
  16 ;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org>
  17 ;;; Copyright © 2020 Jesse Gibbons <jgibbons2357+guix@gmail.com>
  18 ;;; Copyright © 2020 Martin Becze <mjbecze@riseup.net>
  19 ;;;
  20 ;;; This file is part of GNU Guix.
  21 ;;;
  22 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  23 ;;; under the terms of the GNU General Public License as published by
  24 ;;; the Free Software Foundation; either version 3 of the License, or (at
  25 ;;; your option) any later version.
  26 ;;;
  27 ;;; GNU Guix is distributed in the hope that it will be useful, but
  28 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  29 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  30 ;;; GNU General Public License for more details.
  31 ;;;
  32 ;;; You should have received a copy of the GNU General Public License
  33 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  34
  35 (define-module (gnu packages package-management)
  36   #:use-module (gnu packages)
  37   #:use-module (gnu packages acl)
  38   #:use-module (gnu packages attr)
  39   #:use-module (gnu packages avahi)
  40   #:use-module (gnu packages autotools)
  41   #:use-module (gnu packages backup)
  42   #:use-module (gnu packages base)
  43   #:use-module (gnu packages bash)
  44   #:use-module (gnu packages bdw-gc)
  45   #:use-module (gnu packages bison)
  46   #:use-module (gnu packages boost)
  47   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  48   #:use-module (gnu packages check)
  49   #:use-module (gnu packages compression)
  50   #:use-module (gnu packages cpio)
  51   #:use-module (gnu packages crypto)
  52   #:use-module (gnu packages curl)
  53   #:use-module (gnu packages databases)
  54   #:use-module (gnu packages dbm)
  55   #:use-module (gnu packages docbook)
  56   #:use-module (gnu packages file)
  57   #:use-module (gnu packages gettext)
  58   #:use-module (gnu packages glib)
  59   #:use-module (gnu packages gnome)
  60   #:use-module (gnu packages gnupg)
  61   #:use-module (gnu packages graphviz)
  62   #:use-module (gnu packages gtk)
  63   #:use-module (gnu packages guile)
  64   #:use-module (gnu packages guile-xyz)
  65   #:use-module (gnu packages hurd)
  66   #:use-module (gnu packages libedit)
  67   #:use-module (gnu packages linux)
  68   #:use-module (gnu packages lisp)
  69   #:use-module (gnu packages man)
  70   #:use-module (gnu packages nettle)
  71   #:use-module (gnu packages networking)
  72   #:use-module (gnu packages nss)
  73   #:use-module (gnu packages patchutils)
  74   #:use-module (gnu packages perl)
  75   #:use-module (gnu packages perl-check)
  76   #:use-module (gnu packages pkg-config)
  77   #:use-module (gnu packages popt)
  78   #:use-module (gnu packages python)
  79   #:use-module (gnu packages python-web)
  80   #:use-module (gnu packages python-xyz)
  81   #:use-module (gnu packages serialization)
  82   #:use-module (gnu packages sqlite)
  83   #:use-module (gnu packages ssh)
  84   #:use-module (gnu packages texinfo)
  85   #:use-module (gnu packages time)
  86   #:use-module (gnu packages tls)
  87   #:use-module (gnu packages vim)
  88   #:use-module (gnu packages virtualization)
  89   #:use-module (gnu packages web)
  90   #:use-module (gnu packages xml)
  91   #:use-module (gnu packages xorg)
  92   #:use-module (guix build-system glib-or-gtk)
  93   #:use-module (guix build-system gnu)
  94   #:use-module (guix build-system meson)
  95   #:use-module (guix build-system python)
  96   #:use-module (guix download)
  97   #:use-module (guix gexp)
  98   #:use-module (guix git-download)
  99   #:use-module ((guix licenses) #:prefix license:)
 100   #:use-module (guix packages)
 101   #:use-module (guix utils)
 102   #:use-module (ice-9 match)
 103   #:use-module (srfi srfi-1))
 104
 105 (define (boot-guile-uri arch)
 106   "Return the URI for the bootstrap Guile tarball for ARCH."
 107   (cond ((string=? "armhf" arch)
 108          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 109                         arch "-linux"
 110                         "/20150101/guile-2.0.11.tar.xz"))
 111         ((string=? "aarch64" arch)
 112          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 113                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 114         (else
 115          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 116                         arch "-linux"
 117                         "/20131110/guile-2.0.9.tar.xz"))))
 118
 119 ;; NOTE: The commit IDs used here form a linked list threaded through the git
 120 ;; history. In a phenomenon known as boot-stripping, not only the head of this
 121 ;; list is used, but also a few older versions, when a guix from this package is
 122 ;; used to build something also depending on guix.
 123 ;;
 124 ;; Therefore, if, by accident, you set this package to a non-existent commit ID,
 125 ;; it is insufficient to simply correct it with the latest commit.
 126 ;; Instead, please push one commit that rolls back Guix to before the mistake,
 127 ;; and then another that points to the first one. That way, the faulty commit
 128 ;; won't appear on the linked list.
 129 (define-public guix
 130   ;; Latest version of Guix, which may or may not correspond to a release.
 131   ;; Note: the 'update-guix-package.scm' script expects this definition to
 132   ;; start precisely like this.
 133   (let ((version "1.1.0")
 134         (commit "5e7cf66fb35780f930ad0bc5fe21ac330df4411d")
 135         (revision 32))
 136     (package
 137       (name "guix")
 138
 139       (version (if (zero? revision)
 140                    version
 141                    (string-append version "-"
 142                                   (number->string revision)
 143                                   "." (string-take commit 7))))
 144       (source (origin
 145                 (method git-fetch)
 146                 (uri (git-reference
 147                       (url "https://git.savannah.gnu.org/git/guix.git")
 148                       (commit commit)))
 149                 (sha256
 150                  (base32
 151                   "15clfjp845gvl0p6qw0b1gdibqfq20zwzr6dbxvq8l9fgzj1kb6b"))
 152                 (file-name (string-append "guix-" version "-checkout"))))
 153       (build-system gnu-build-system)
 154       (arguments
 155        `(#:configure-flags (list
 156                             "--localstatedir=/var"
 157                             "--sysconfdir=/etc"
 158                             (string-append "--with-bash-completion-dir="
 159                                            (assoc-ref %outputs "out")
 160                                            "/etc/bash_completion.d")
 161
 162                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 163                             ;; we don't keep a reference to Graphviz, whose
 164                             ;; closure is pretty big (too big for the Guix
 165                             ;; system installation image.)
 166                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 167
 168                             ;; To avoid problems with the length of shebangs,
 169                             ;; choose a fixed-width and short directory name
 170                             ;; for tests.
 171                             "ac_cv_guix_test_root=/tmp/guix-tests"
 172                             ,@(if (hurd-target?) '("--with-courage") '()))
 173          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 174
 175          #:modules ((guix build gnu-build-system)
 176                     (guix build utils)
 177                     (srfi srfi-26)
 178                     (ice-9 popen)
 179                     (ice-9 rdelim))
 180
 181          #:phases (modify-phases %standard-phases
 182                     (replace 'bootstrap
 183                       (lambda _
 184                         ;; Make sure 'msgmerge' can modify the PO files.
 185                         (for-each (lambda (po)
 186                                     (chmod po #o666))
 187                                   (find-files "." "\\.po$"))
 188
 189                         (patch-shebang "build-aux/git-version-gen")
 190
 191                         (call-with-output-file ".tarball-version"
 192                           (lambda (port)
 193                             (display ,version port)))
 194
 195                         ;; Install SysV init files to $(prefix)/etc rather
 196                         ;; than to /etc.
 197                         (substitute* "nix/local.mk"
 198                           (("^sysvinitservicedir = .*$")
 199                            (string-append "sysvinitservicedir = \
 200 $(prefix)/etc/init.d\n")))
 201
 202                         ;; Install OpenRC init files to $(prefix)/etc rather
 203                         ;; than to /etc.
 204                         (substitute* "nix/local.mk"
 205                           (("^openrcservicedir = .*$")
 206                            (string-append "openrcservicedir = \
 207 $(prefix)/etc/init.d\n")))
 208
 209                         (invoke "sh" "bootstrap")))
 210                     (add-before 'build 'use-host-compressors
 211                       (lambda* (#:key inputs target #:allow-other-keys)
 212                         (when target
 213                           ;; Use host compressors.
 214                           (let ((bzip2 (assoc-ref inputs "bzip2"))
 215                                 (gzip (assoc-ref inputs "gzip"))
 216                                 (xz (assoc-ref inputs "xz")))
 217                             (substitute* "guix/config.scm"
 218                               (("\"[^\"]*/bin/bzip2")
 219                                (string-append "\"" bzip2 "/bin/bzip2"))
 220                               (("\"[^\"]*/bin/gzip") gzip
 221                                (string-append "\"" gzip "/bin/gzip"))
 222                               (("\"[^\"]*/bin//xz")
 223                                (string-append "\"" xz "/bin/xz")))))
 224                         #t))
 225                     (add-before 'check 'copy-bootstrap-guile
 226                       (lambda* (#:key system target inputs #:allow-other-keys)
 227                         ;; Copy the bootstrap guile tarball in the store
 228                         ;; used by the test suite.
 229                         (define (intern file recursive?)
 230                           ;; Note: don't use 'guix download' here because we
 231                           ;; need to set the 'recursive?' argument.
 232                           (define base
 233                             (strip-store-file-name file))
 234
 235                           (define code
 236                             `(begin
 237                                (use-modules (guix))
 238                                (with-store store
 239                                  (let* ((item (add-to-store store ,base
 240                                                             ,recursive?
 241                                                             "sha256" ,file))
 242                                         (root (string-append "/tmp/gc-root-"
 243                                                              (basename item))))
 244                                    ;; Register a root so that the GC tests
 245                                    ;; don't delete those.
 246                                    (symlink item root)
 247                                    (add-indirect-root store root)))))
 248
 249                           (invoke "./test-env" "guile" "-c"
 250                                   (object->string code)))
 251
 252                         (unless target
 253                           (intern (assoc-ref inputs "boot-guile") #f)
 254
 255                           ;; On x86_64 some tests need the i686 Guile.
 256                           ,@(if (and (not (%current-target-system))
 257                                      (string=? (%current-system)
 258                                                "x86_64-linux"))
 259                                 '((intern (assoc-ref inputs "boot-guile/i686") #f))
 260                                 '())
 261
 262                           ;; Copy the bootstrap executables.
 263                           (for-each (lambda (input)
 264                                       (intern (assoc-ref inputs input) #t))
 265                                     '("bootstrap/bash" "bootstrap/mkdir"
 266                                       "bootstrap/tar" "bootstrap/xz")))
 267                         #t))
 268                     (add-after 'unpack 'disable-failing-tests
 269                       ;; XXX FIXME: These tests fail within the build container.
 270                       (lambda _
 271                         (substitute* "tests/syscalls.scm"
 272                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 273                            (string-append "(test-skip 1)\n" all)))
 274                         (substitute* "tests/containers.scm"
 275                           (("^\\(test-(assert|equal)" all)
 276                            (string-append "(test-skip 1)\n" all)))
 277                         (when (file-exists? "tests/guix-environment-container.sh")
 278                           (substitute* "tests/guix-environment-container.sh"
 279                             (("guix environment --version")
 280                              "exit 77\n")))
 281                         #t))
 282                     (add-before 'check 'set-SHELL
 283                       (lambda _
 284                         ;; 'guix environment' tests rely on 'SHELL' having a
 285                         ;; correct value, so set it.
 286                         (setenv "SHELL" (which "sh"))
 287                         #t))
 288                     (add-after 'install 'wrap-program
 289                       (lambda* (#:key inputs native-inputs outputs target
 290                                 #:allow-other-keys)
 291                         ;; Make sure the 'guix' command finds GnuTLS,
 292                         ;; Guile-JSON, and Guile-Git automatically.
 293                         (let* ((out    (assoc-ref outputs "out"))
 294                                (guile  ,@(if (%current-target-system)
 295                                              '((assoc-ref native-inputs "guile"))
 296                                              '((assoc-ref inputs "guile"))))
 297                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 298                                (json   (assoc-ref inputs "guile-json"))
 299                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 300                                (zlib   (assoc-ref inputs "guile-zlib"))
 301                                (lzlib  (assoc-ref inputs "guile-lzlib"))
 302                                (git    (assoc-ref inputs "guile-git"))
 303                                (bs     (assoc-ref inputs
 304                                                   "guile-bytestructures"))
 305                                (ssh    (assoc-ref inputs "guile-ssh"))
 306                                (gnutls (assoc-ref inputs "gnutls"))
 307                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 308                                (deps   (list gcrypt json sqlite gnutls
 309                                              git bs ssh zlib lzlib))
 310                                (effective
 311                                 (read-line
 312                                  (open-pipe* OPEN_READ
 313                                              (string-append guile "/bin/guile")
 314                                              "-c" "(display (effective-version))")))
 315                                (path   (string-join
 316                                         (map (cut string-append <>
 317                                                   "/share/guile/site/"
 318                                                   effective)
 319                                              (delete #f deps))
 320                                         ":"))
 321                                (gopath (string-join
 322                                         (map (cut string-append <>
 323                                                   "/lib/guile/" effective
 324                                                   "/site-ccache")
 325                                              (delete #f deps))
 326                                         ":"))
 327                                (locpath (string-append locales "/lib/locale")))
 328
 329                           (wrap-program (string-append out "/bin/guix")
 330                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 331                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 332                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 333
 334                           (when target
 335                             ;; XXX Touching wrap-program rebuilds world
 336                             (let ((bash (assoc-ref inputs "bash")))
 337                               (substitute* (string-append out "/bin/guix")
 338                                 (("^#!.*/bash") (string-append "#! " bash "/bin/bash")))))
 339                           #t))))))
 340       (native-inputs `(("pkg-config" ,pkg-config)
 341
 342                        ;; Guile libraries are needed here for
 343                        ;; cross-compilation.
 344                        ("guile" ,guile-3.0-latest) ;for faster builds
 345                        ("gnutls" ,gnutls)
 346                        ("guile-gcrypt" ,guile-gcrypt)
 347                        ("guile-json" ,guile-json-4)
 348                        ("guile-sqlite3" ,guile-sqlite3)
 349                        ("guile-zlib" ,guile-zlib)
 350                        ("guile-lzlib" ,guile-lzlib)
 351                        ("guile-ssh" ,guile-ssh)
 352                        ("guile-git" ,guile-git)
 353
 354                        ;; XXX: Keep the development inputs here even though
 355                        ;; they're unnecessary, just so that 'guix environment
 356                        ;; guix' always contains them.
 357                        ("autoconf" ,autoconf-wrapper)
 358                        ("automake" ,automake)
 359                        ("gettext" ,gettext-minimal)
 360                        ("texinfo" ,texinfo)
 361                        ("graphviz" ,graphviz)
 362                        ("help2man" ,help2man)
 363                        ("po4a" ,po4a)))
 364       (inputs
 365        `(("bzip2" ,bzip2)
 366          ("gzip" ,gzip)
 367          ("sqlite" ,sqlite)
 368          ("libgcrypt" ,libgcrypt)
 369
 370          ("guile" ,guile-3.0-latest)
 371
 372          ;; Some of the tests use "unshare" when it is available.
 373          ("util-linux" ,util-linux)
 374
 375          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 376          ;; have it here.
 377          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 378          ,@(if (and (not (%current-target-system))
 379                     (string=? (%current-system) "x86_64-linux"))
 380                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 381                '())
 382          ,@(if (%current-target-system)
 383                `(("bash" ,bash-minimal)
 384                  ("xz" ,xz))
 385                '())
 386
 387          ;; Tests also rely on these bootstrap executables.
 388          ("bootstrap/bash" ,(bootstrap-executable "bash" (%current-system)))
 389          ("bootstrap/mkdir" ,(bootstrap-executable "mkdir" (%current-system)))
 390          ("bootstrap/tar" ,(bootstrap-executable "tar" (%current-system)))
 391          ("bootstrap/xz" ,(bootstrap-executable "xz" (%current-system)))
 392
 393          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 394       (propagated-inputs
 395        `(("gnutls" ,(if (%current-target-system) gnutls-3.6.14 gnutls))
 396          ("guile-gcrypt" ,guile-gcrypt)
 397          ("guile-json" ,guile-json-4)
 398          ("guile-sqlite3" ,guile-sqlite3)
 399          ("guile-ssh" ,guile-ssh)
 400          ("guile-git" ,guile-git)
 401          ("guile-zlib" ,guile-zlib)
 402          ("guile-lzlib" ,guile-lzlib)))
 403
 404       (home-page "https://www.gnu.org/software/guix/")
 405       (synopsis "Functional package manager for installed software packages and versions")
 406       (description
 407        "GNU Guix is a functional package manager for the GNU system, and is
 408 also a distribution thereof.  It includes a virtual machine image.  Besides
 409 the usual package management features, it also supports transactional
 410 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 411 the Nix package manager.")
 412       (license license:gpl3+)
 413       (properties '((ftp-server . "alpha.gnu.org"))))))
 414
 415 (define-public guix-daemon
 416   ;; This package is for internal consumption: it allows us to quickly build
 417   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 418   ;; pull'.
 419   (package
 420     (inherit guix)
 421     (properties `((hidden? . #t)))
 422     (name "guix-daemon")
 423
 424     ;; Use a minimum set of dependencies.
 425     (native-inputs
 426      (fold alist-delete (package-native-inputs guix)
 427            '("po4a" "graphviz" "help2man")))
 428     (inputs
 429      `(("gnutls" ,gnutls)
 430        ("guile-git" ,guile-git)
 431        ("guile-json" ,guile-json-3)
 432        ("guile-gcrypt" ,guile-gcrypt)
 433        ,@(fold alist-delete (package-inputs guix)
 434                '("boot-guile" "boot-guile/i686" "util-linux"))))
 435
 436     (propagated-inputs '())
 437
 438     (arguments
 439      (substitute-keyword-arguments (package-arguments guix)
 440        ((#:configure-flags flags '())
 441         ;; Pretend we have those libraries; we don't actually need them.
 442         `(append ,flags
 443                  '("guix_cv_have_recent_guile_sqlite3=yes"
 444                    "guix_cv_have_recent_guile_ssh=yes")))
 445        ((#:tests? #f #f)
 446         #f)
 447        ((#:phases phases '%standard-phases)
 448         `(modify-phases ,phases
 449            (add-after 'unpack 'change-default-guix
 450              (lambda _
 451                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 452                ;; Here we use a questionable hack where we hard-code root's
 453                ;; current guix, which could be wrong (XXX).  Note that scripts
 454                ;; like 'guix perform-download' do not run as root so we assume
 455                ;; that they have access to /var/guix/profiles/per-user/root.
 456                (substitute* "nix/libstore/globals.cc"
 457                  (("guixProgram = (.*)nixBinDir + \"/guix\"" _ before)
 458                   (string-append "guixProgram = " before
 459                                  "/var/guix/profiles/per-user/root\
 460 /current-guix/bin/guix")))
 461                #t))
 462            (replace 'build
 463              (lambda _
 464                (invoke "make" "nix/libstore/schema.sql.hh")
 465                (invoke "make" "-j" (number->string
 466                                     (parallel-job-count))
 467                        "guix-daemon")))
 468            (delete 'copy-bootstrap-guile)
 469            (replace 'install
 470              (lambda* (#:key outputs #:allow-other-keys)
 471                (invoke "make" "install-binPROGRAMS")))
 472            (delete 'wrap-program)))))))
 473
 474
 475 (define-public guile2.2-guix
 476   (package
 477     (inherit guix)
 478     (name "guile2.2-guix")
 479     (native-inputs
 480      `(("guile" ,guile-2.2)
 481        ("gnutls" ,guile2.2-gnutls)
 482        ("guile-gcrypt" ,guile2.2-gcrypt)
 483        ("guile-json" ,guile2.2-json)
 484        ("guile-sqlite3" ,guile2.2-sqlite3)
 485        ("guile-ssh" ,guile2.2-ssh)
 486        ("guile-git" ,guile2.2-git)
 487        ,@(fold alist-delete (package-native-inputs guix)
 488                '("guile" "gnutls" "guile-gcrypt" "guile-json"
 489                  "guile-sqlite3" "guile-ssh" "guile-git"))))
 490     (inputs
 491      `(("guile" ,guile-2.2)
 492        ,@(alist-delete "guile" (package-inputs guix))))
 493     (propagated-inputs
 494      `(("gnutls" ,gnutls)
 495        ("guile-gcrypt" ,guile2.2-gcrypt)
 496        ("guile-json" ,guile2.2-json)
 497        ("guile-sqlite3" ,guile2.2-sqlite3)
 498        ("guile-ssh" ,guile2.2-ssh)
 499        ("guile-git" ,guile2.2-git)))))
 500
 501 (define-public guile3.0-guix
 502   (deprecated-package "guile3.0-guix" guix))
 503
 504 (define-public guix-minimal
 505   ;; A version of Guix which is built with the minimal set of dependencies, as
 506   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 507   ;; marked as hidden.
 508   (hidden-package
 509    (package
 510      (inherit guix)
 511      (name "guix-minimal")
 512      (native-inputs
 513       (fold alist-delete
 514             (package-native-inputs guix)
 515             '("guile-ssh")))
 516      (propagated-inputs
 517       (fold alist-delete
 518             (package-propagated-inputs guix)
 519             '("guile-ssh"))))))
 520
 521 (define (source-file? file stat)
 522   "Return true if FILE is likely a source file, false if it is a typical
 523 generated file."
 524   (define (wrong-extension? file)
 525     (or (string-suffix? "~" file)
 526         (member (file-extension file)
 527                 '("o" "a" "lo" "so" "go"))))
 528
 529   (match (basename file)
 530     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 531      #f)
 532     ((? wrong-extension?)
 533      #f)
 534     (_
 535      #t)))
 536
 537 (define-public current-guix-package
 538   ;; This parameter allows callers to override the package that 'current-guix'
 539   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 540   ;; for instance because it's not running from a source code checkout.
 541   (make-parameter #f))
 542
 543 (define-public current-guix
 544   (let* ((repository-root (delay (canonicalize-path
 545                                   (string-append (current-source-directory)
 546                                                  "/../.."))))
 547          (select? (delay (or (git-predicate (force repository-root))
 548                              source-file?))))
 549     (lambda ()
 550       "Return a package representing Guix built from the current source tree.
 551 This works by adding the current source tree to the store (after filtering it
 552 out) and returning a package that uses that as its 'source'."
 553       (or (current-guix-package)
 554           (package
 555             (inherit guix)
 556             (version (string-append (package-version guix) "+"))
 557             (source (local-file (force repository-root) "guix-current"
 558                                 #:recursive? #t
 559                                 #:select? (force select?))))))))
 560
 561 \f
 562 ;;;
 563 ;;; Other tools.
 564 ;;;
 565
 566 (define-public nix
 567   (package
 568     (name "nix")
 569     (version "2.3.8")
 570     (source (origin
 571              (method url-fetch)
 572              (uri (string-append "https://nixos.org/releases/nix/nix-"
 573                                  version "/nix-" version ".tar.xz"))
 574              (sha256
 575               (base32
 576                "0amd5nnqslvkfpz042l4ydihw2qsy68nmjbwaagcrggaq4irh4f7"))))
 577     (build-system gnu-build-system)
 578     (arguments
 579      `(#:configure-flags '("--sysconfdir=/etc" "--enable-gc")
 580        #:phases
 581        (modify-phases %standard-phases
 582          (replace 'install
 583            ;; Don't try & fail to create subdirectories in /etc, but keep them
 584            ;; in the output as examples.
 585            (lambda* (#:key (make-flags '()) outputs #:allow-other-keys)
 586              (let* ((out (assoc-ref outputs "out"))
 587                     (etc (string-append out "/etc")))
 588                (apply invoke "make" "install"
 589                       (string-append "sysconfdir=" etc)
 590                       (string-append "profiledir=" etc "/profile.d")
 591                       make-flags)))))))
 592     (native-inputs `(("pkg-config" ,pkg-config)))
 593     (inputs `(("boost" ,boost)
 594               ("brotli" ,brotli)
 595               ("bzip2" ,bzip2)
 596               ("curl" ,curl)
 597               ("editline" ,editline)
 598               ("libgc" ,libgc)
 599               ("libseccomp" ,libseccomp)
 600               ("libsodium" ,libsodium)
 601               ("openssl" ,openssl)
 602               ("sqlite" ,sqlite)
 603               ("xz" ,xz)))
 604     (home-page "https://nixos.org/nix/")
 605     (synopsis "The Nix package manager")
 606     (description
 607      "Nix is a purely functional package manager.  This means that it treats
 608 packages like values in purely functional programming languages such as
 609 Haskell—they are built by functions that don't have side-effects, and they
 610 never change after they have been built.  Nix stores packages in the Nix
 611 store, usually the directory /nix/store, where each package has its own unique
 612 sub-directory.")
 613     (license license:lgpl2.1+)))
 614
 615 (define-public stow
 616   (package
 617     (name "stow")
 618     (version "2.3.1")
 619     (source (origin
 620               (method url-fetch)
 621               (uri (string-append "mirror://gnu/stow/stow-"
 622                                   version ".tar.gz"))
 623               (sha256
 624                (base32
 625                 "0jrxy12ywn7smdzdnvwzjw77l6knx6jkj2rckgykg1dpf6bdkm89"))))
 626     (build-system gnu-build-system)
 627     (inputs
 628      `(("perl" ,perl)))
 629     (native-inputs
 630      `(("perl-test-simple" ,perl-test-simple)
 631        ("perl-test-output" ,perl-test-output)
 632        ("perl-capture-tiny" ,perl-capture-tiny)
 633        ("perl-io-stringy" ,perl-io-stringy)))
 634     (home-page "https://www.gnu.org/software/stow/")
 635     (synopsis "Managing installed software packages")
 636     (description
 637      "GNU Stow is a symlink manager.  It generates symlinks to directories
 638 of data and makes them appear to be merged into the same directory.  It is
 639 typically used for managing software packages installed from source, by
 640 letting you install them apart in distinct directories and then create
 641 symlinks to the files in a common directory such as /usr/local.")
 642     (license license:gpl3+)))
 643
 644 (define-public xstow
 645   (package
 646     (name "xstow")
 647     (version "1.0.2")
 648     (source (origin
 649               (method url-fetch)
 650               (uri (string-append "mirror://sourceforge/xstow/xstow-"
 651                                   version ".tar.bz2"))
 652               (sha256
 653                (base32
 654                 "1vy6lcswpkixh7h5mvsmq2wbcih6lpsmcva3m7v6f5npllciy13g"))))
 655     (build-system gnu-build-system)
 656     (synopsis "Replacement of GNU Stow written in C++")
 657     (description
 658      "XStow is a replacement of GNU Stow written in C++.  It supports all
 659 features of Stow with some extensions.")
 660     (home-page "http://xstow.sourceforge.net/")
 661     (license license:gpl2)))
 662
 663 (define-public rpm
 664   (package
 665     (name "rpm")
 666     (version "4.14.2.1")
 667     (source (origin
 668               (method url-fetch)
 669               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 670                                   (version-major+minor version) ".x/rpm-"
 671                                   version ".tar.bz2"))
 672               (sha256
 673                (base32
 674                 "1nmck2fq9h85fgs3zhh6w1avlw5y16cbz5khd459ry3jfd5w4f8i"))))
 675     (build-system gnu-build-system)
 676     (arguments
 677      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 678                            "--enable-python"
 679                            "--without-lua")
 680        #:phases (modify-phases %standard-phases
 681                   (add-before 'configure 'set-nss-library-path
 682                     (lambda* (#:key inputs #:allow-other-keys)
 683                       (let ((nss (assoc-ref inputs "nss")))
 684                         (setenv "LIBRARY_PATH"
 685                                 (string-append (getenv "LIBRARY_PATH") ":"
 686                                                nss "/lib/nss"))
 687                         #t))))))
 688     (native-inputs
 689      `(("pkg-config" ,pkg-config)))
 690     (inputs
 691      `(("python" ,python)
 692        ("xz" ,xz)
 693        ("bdb" ,bdb)
 694        ("popt" ,popt)
 695        ("nss" ,nss)
 696        ("nspr" ,nspr)
 697        ("libarchive" ,libarchive)
 698        ("file" ,file)
 699        ("bzip2" ,bzip2)
 700        ("zlib" ,zlib)
 701        ("cpio" ,cpio)))
 702     (home-page "https://rpm.org/")
 703     (synopsis "The RPM Package Manager")
 704     (description
 705      "The RPM Package Manager (RPM) is a command-line driven package
 706 management system capable of installing, uninstalling, verifying, querying,
 707 and updating computer software packages.  Each software package consists of an
 708 archive of files along with information about the package like its version, a
 709 description.  There is also a library permitting developers to manage such
 710 transactions from C or Python.")
 711
 712     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 713     (license license:gpl2+)))
 714
 715 (define-public python-anaconda-client
 716   (package
 717     (name "python-anaconda-client")
 718     (version "1.6.3")
 719     (source
 720      (origin
 721        (method git-fetch)
 722        (uri (git-reference
 723               (url "https://github.com/Anaconda-Platform/anaconda-client")
 724               (commit version)))
 725        (file-name (git-file-name name version))
 726        (sha256
 727         (base32
 728          "0w1bfxnydjl9qp53r2gcvr6vlpdqqilcrzqxrll9sgg6vwdyiyyp"))))
 729     (build-system python-build-system)
 730     (propagated-inputs
 731      `(("python-pyyaml" ,python-pyyaml)
 732        ("python-requests" ,python-requests)
 733        ("python-clyent" ,python-clyent)))
 734     (native-inputs
 735      `(("python-pytz" ,python-pytz)
 736        ("python-dateutil" ,python-dateutil)
 737        ("python-mock" ,python-mock)
 738        ("python-coverage" ,python-coverage)
 739        ("python-pillow" ,python-pillow)))
 740     (arguments
 741      `(#:phases
 742        (modify-phases %standard-phases
 743          ;; This is needed for some tests.
 744          (add-before 'check 'set-up-home
 745            (lambda* _ (setenv "HOME" "/tmp") #t))
 746          (add-before 'check 'remove-network-tests
 747            (lambda* _
 748              ;; Remove tests requiring a network connection
 749              (let ((network-tests '("tests/test_upload.py"
 750                                     "tests/test_authorizations.py"
 751                                     "tests/test_login.py"
 752                                     "tests/test_whoami.py"
 753                                     "utils/notebook/tests/test_data_uri.py"
 754                                     "utils/notebook/tests/test_base.py"
 755                                     "utils/notebook/tests/test_downloader.py"
 756                                     "inspect_package/tests/test_conda.py")))
 757                (with-directory-excursion "binstar_client"
 758                  (for-each delete-file network-tests)))
 759              #t)))))
 760     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 761     (synopsis "Anaconda Cloud command line client library")
 762     (description
 763      "Anaconda Cloud command line client library provides an interface to
 764 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 765 environments.")
 766     (license license:bsd-3)))
 767
 768 (define-public python2-anaconda-client
 769   (package-with-python2 python-anaconda-client))
 770
 771 (define-public python-conda-package-handling
 772   (package
 773     (name "python-conda-package-handling")
 774     (version "1.6.0")
 775     (source
 776      (origin
 777        (method git-fetch)
 778        (uri (git-reference
 779              (url "https://github.com/conda/conda-package-handling/")
 780              (commit version)))
 781        (file-name (git-file-name name version))
 782        (sha256
 783         (base32
 784          "0bqbs6a8jbjmbn47n5n1p529cx7pf4vgfnhqca9mflgidfb5i0jf"))))
 785     (build-system python-build-system)
 786     (arguments
 787      `(#:phases
 788        (modify-phases %standard-phases
 789          (add-after 'unpack 'use-unmodified-libarchive
 790            (lambda _
 791              (substitute* "setup.py"
 792                (("archive_and_deps") "archive"))
 793              #t))
 794          (replace 'check
 795            (lambda* (#:key inputs outputs #:allow-other-keys)
 796              (add-installed-pythonpath inputs outputs)
 797              (invoke "pytest" "-vv" "tests"
 798                      "-k"
 799                      (string-append
 800                       ;; TODO: these three fail because the mocker fixture
 801                       ;; cannot be found
 802                       "not test_rename_to_trash"
 803                       " and not test_api_extract_tarball_with_libarchive_import_error"
 804                       " and not test_delete_trash"
 805                       ;; TODO: this one does not raise an exception when it
 806                       ;; should.
 807                       " and not test_secure_refusal_to_extract_abs_paths")))))))
 808     (propagated-inputs
 809      `(("python-six" ,python-six)
 810        ("python-tqdm" ,python-tqdm)))
 811     (inputs
 812      `(("libarchive" ,libarchive)))
 813     (native-inputs
 814      `(("python-cython" ,python-cython)
 815        ("python-pytest" ,python-pytest)
 816        ("python-pytest-cov" ,python-pytest-cov)
 817        ("python-mock" ,python-mock)))
 818     (home-page "https://conda.io")
 819     (synopsis "Create and extract conda packages of various formats")
 820     (description
 821      "This library is an abstraction of Conda package handling and a tool for
 822 extracting, creating, and converting between formats.")
 823     (license license:bsd-3)))
 824
 825 (define-public conda
 826   (package
 827     (name "conda")
 828     (version "4.8.3")
 829     (source
 830      (origin
 831        (method git-fetch)
 832        (uri (git-reference
 833               (url "https://github.com/conda/conda")
 834               (commit version)))
 835        (file-name (git-file-name name version))
 836        (sha256
 837         (base32
 838          "0iv1qzk21jsk6vdp3106xvpvl68zgfdqb3kyzpya87jhkl204l7r"))))
 839     (build-system python-build-system)
 840     (arguments
 841      `(#:phases
 842        (modify-phases %standard-phases
 843          (add-after 'unpack 'fix-permissions
 844            (lambda _
 845              ;; This file is no longer writable after downloading with
 846              ;; 'git-fetch'
 847              (make-file-writable
 848               "tests/conda_env/support/saved-env/environment.yml")
 849              #t))
 850          (add-after 'unpack 'correct-python-executable-name
 851            (lambda* (#:key inputs #:allow-other-keys)
 852              (let ((python (assoc-ref inputs "python-wrapper")))
 853                #;
 854                (substitute* "conda/common/path.py"
 855                  (("python_version or ''")
 856                   "python_version or '3'"))
 857                (substitute* "conda/core/initialize.py"
 858                  (("python_exe = join")
 859                   (format #f "python_exe = \"~a/bin/python\" #"
 860                           python))))
 861              #t))
 862          (add-after 'unpack 'do-not-use-python-root-as-prefix
 863            (lambda* (#:key inputs outputs #:allow-other-keys)
 864              (let ((out (assoc-ref outputs "out"))
 865                    (python (assoc-ref inputs "python-wrapper")))
 866                (substitute* "tests/core/test_initialize.py"
 867                  (("\"\"\"\\) % conda_prefix")
 868                   (format #f "\"\"\") % \"~a\"" python))
 869                  (("CONDA_PYTHON_EXE \"%s\"' % join\\(conda_prefix")
 870                   (format #f "CONDA_PYTHON_EXE \"%s\"' % join(\"~a\""
 871                           python))
 872                  (("conda_prefix = abspath\\(sys.prefix\\)")
 873                   (format #f "conda_prefix = abspath(\"~a\")" out)))
 874                (substitute* "conda/base/context.py"
 875                  (("os.chdir\\(sys.prefix\\)")
 876                   (format #f "os.chdir(\"~a\")" out))
 877                  (("sys.prefix, '.condarc'")
 878                   (format #f "\"~a\", '.condarc'" out))
 879                  (("return abspath\\(sys.prefix\\)")
 880                   (format #f "return abspath(\"~a\")" out))
 881                  (("os.path.join\\(sys.prefix, bin_dir, exe\\)")
 882                   (format #f "\"~a/bin/conda\"" out))
 883                  (("'CONDA_EXE', sys.executable")
 884                   (format #f "'CONDA_EXE', \"~a/bin/conda\"" out))))
 885              #t))
 886          (add-before 'build 'create-version-file
 887            (lambda _
 888              (with-output-to-file "conda/.version"
 889                (lambda () (display ,version)))
 890              #t))
 891          (replace 'check
 892            (lambda _
 893              (setenv "HOME" "/tmp")
 894              (invoke "py.test" "-vv"
 895                      "-k"
 896                      (string-append
 897                       "not integration"
 898                       ;; This one reports a newer version of conda than
 899                       ;; expected.
 900                       " and not test_auto_update_conda"
 901                       ;; This fails because the output directory is not a
 902                       ;; Conda environment.
 903                       " and not test_list"
 904                       ;; This fails because we patched the default root
 905                       ;; prefix.
 906                       " and not test_default_target_is_root_prefix"
 907                       ;; TODO: I don't understand what this failure means
 908                       " and not test_PrefixData_return_value_contract"
 909                       ;; TODO: same here
 910                       " and not test_install_1"
 911                       ;; Not sure if this is really wrong.  This fails because
 912                       ;; /gnu/store/...python-conda-4.8.3/bin/python
 913                       ;; is not /gnu/store/...python-wrapper-3.8.2/bin/python
 914                       " and not test_make_entry_point"))))
 915          (add-after 'install 'init
 916            ;; This writes a whole bunch of shell initialization files to the
 917            ;; prefix directory.  Many features of conda can only be used after
 918            ;; running "conda init".
 919            (lambda* (#:key inputs outputs #:allow-other-keys)
 920              (add-installed-pythonpath inputs outputs)
 921              (setenv "HOME" "/tmp")
 922
 923              ;; "conda init" insists on using sudo, because it is hell-bent on
 924              ;; modifying system files.
 925              (mkdir-p "/tmp/fake-sudo")
 926              (with-output-to-file "/tmp/fake-sudo/sudo"
 927                (lambda () (format #t "#!~/bin/sh~%exec $@" (which "sh"))))
 928              (chmod "/tmp/fake-sudo/sudo" #o700)
 929              (setenv "PATH" (string-append "/tmp/fake-sudo:"
 930                                            (getenv "PATH")))
 931
 932              (invoke (string-append (assoc-ref outputs "out")
 933                                     "/bin/conda")
 934                      "init"))))))
 935     (inputs
 936      `(("python-wrapper" ,python-wrapper)))
 937     (propagated-inputs
 938      `(("python-anaconda-client" ,python-anaconda-client)
 939        ("python-conda-package-handling" ,python-conda-package-handling)
 940        ("python-cytoolz" ,python-cytoolz)
 941        ("python-pycosat" ,python-pycosat)
 942        ("python-pytest" ,python-pytest)
 943        ("python-pyyaml" ,python-pyyaml)
 944        ("python-requests" ,python-requests)
 945        ("python-responses" ,python-responses)
 946        ("python-ruamel.yaml" ,python-ruamel.yaml)
 947        ("python-tqdm" ,python-tqdm)
 948        ;; XXX: This is dragged in by libarchive and is needed at runtime.
 949        ("zstd" ,zstd)))
 950     (home-page "https://github.com/conda/conda")
 951     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 952     (description
 953      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 954 is the package manager used by Anaconda installations, but it may be used for
 955 other systems as well.  Conda makes environments first-class citizens, making
 956 it easy to create independent environments even for C libraries.  Conda is
 957 written entirely in Python.")
 958     (license license:bsd-3)))
 959
 960 (define-public python-conda
 961   (deprecated-package "python-conda" conda))
 962
 963 (define-public gwl
 964   (package
 965     (name "gwl")
 966     (version "0.2.1")
 967     (source (origin
 968               (method url-fetch)
 969               (uri (string-append "mirror://gnu/gwl/gwl-" version ".tar.gz"))
 970               (sha256
 971                (base32
 972                 "1ji5jvzni8aml9fmimlr11g3k8isrnlvnbzhmwgdjh72hils0alc"))))
 973     (build-system gnu-build-system)
 974     (arguments
 975      `(#:phases
 976        (modify-phases %standard-phases
 977          (add-before 'build 'fix-tests
 978            (lambda _
 979              ;; Avoid cross-device link.
 980              (substitute* "tests/cache.scm"
 981                (("/tmp/gwl-test-input-XXXXXX")
 982                 (string-append (getcwd) "/gwl-test-input-XXXXXX")))
 983              #t)))))
 984     (native-inputs
 985      `(("autoconf" ,autoconf)
 986        ("automake" ,automake)
 987        ("pkg-config" ,pkg-config)
 988        ("texinfo" ,texinfo)
 989        ("graphviz" ,graphviz)))
 990     (inputs
 991      `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
 992     (propagated-inputs
 993      `(("guix" ,guix)
 994        ("guile-commonmark" ,guile-commonmark)
 995        ("guile-gcrypt" ,guile-gcrypt)
 996        ("guile-pfds" ,guile-pfds)
 997        ("guile-syntax-highlight" ,guile-syntax-highlight)
 998        ("guile-wisp" ,guile-wisp)))
 999     (home-page "https://workflows.guix.info")
1000     (synopsis "Workflow management extension for GNU Guix")
1001     (description "The @dfn{Guix Workflow Language} (GWL) provides an
1002 extension to GNU Guix's declarative language for package management to
1003 automate the execution of programs in scientific workflows.  The GWL
1004 can use process engines to integrate with various computing
1005 environments.")
1006     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
1007     ;; the web interface modules in gwl/ are licensed AGPL3+,
1008     ;; and the fonts included in this package are licensed OFL1.1.
1009     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
1010
1011 (define-public guix-build-coordinator
1012   (let ((commit "98f50831612b9d1253ae8ca2bceb547fed373f41")
1013         (revision "5"))
1014     (package
1015       (name "guix-build-coordinator")
1016       (version (git-version "0" revision commit))
1017       (source (origin
1018                 (method git-fetch)
1019                 (uri (git-reference
1020                       (url "https://git.cbaines.net/git/guix/build-coordinator")
1021                       (commit commit)))
1022                 (sha256
1023                  (base32
1024                   "08xwb5phh14cxgwv4fxcd2hhpjgqxfknm9zkx9qp26zb56w2xzkz"))
1025                 (file-name (string-append name "-" version "-checkout"))))
1026       (build-system gnu-build-system)
1027       (arguments
1028        `(#:modules (((guix build guile-build-system)
1029                      #:select (target-guile-effective-version))
1030                     ,@%gnu-build-system-modules)
1031          #:imported-modules ((guix build guile-build-system)
1032                              ,@%gnu-build-system-modules)
1033          #:phases
1034          (modify-phases %standard-phases
1035            (add-before 'build 'set-GUILE_AUTO_COMPILE
1036              (lambda _
1037                ;; To avoid warnings relating to 'guild'.
1038                (setenv "GUILE_AUTO_COMPILE" "0")
1039                #t))
1040            (add-after 'install 'wrap-executable
1041              (lambda* (#:key inputs outputs #:allow-other-keys)
1042                (let* ((out (assoc-ref outputs "out"))
1043                       (bin (string-append out "/bin"))
1044                       (guile (assoc-ref inputs "guile"))
1045                       (version (target-guile-effective-version))
1046                       (scm (string-append out "/share/guile/site/" version))
1047                       (go  (string-append out "/lib/guile/" version "/site-ccache")))
1048                  (for-each
1049                   (lambda (file)
1050                     (simple-format (current-error-port) "wrapping: ~A\n" file)
1051                     (wrap-program file
1052                       `("PATH" ":" prefix
1053                         (,bin
1054                          ;; Support building without sqitch as an input, as it
1055                          ;; can't be cross-compiled yet
1056                          ,@(or (and=> (assoc-ref inputs "sqitch")
1057                                       list)
1058                                '())))
1059                       `("GUILE_LOAD_PATH" ":" prefix
1060                         (,scm ,(getenv "GUILE_LOAD_PATH")))
1061                       `("GUILE_LOAD_COMPILED_PATH" ":" prefix
1062                         (,go ,(getenv "GUILE_LOAD_COMPILED_PATH")))))
1063                   (find-files bin)))
1064                #t))
1065            (delete 'strip))))             ; As the .go files aren't compatible
1066       (native-inputs
1067        `(("pkg-config" ,pkg-config)
1068          ("autoconf" ,autoconf)
1069          ("automake" ,automake)
1070          ("gnutls" ,gnutls)
1071
1072          ;; Guile libraries are needed here for cross-compilation.
1073          ("guile-json" ,guile-json-3)
1074          ("guile-gcrypt" ,guile-gcrypt)
1075          ("guix" ,guix)
1076          ("guile-prometheus" ,guile-prometheus)
1077          ("guile-fibers" ,guile-fibers)
1078          ("guile-lib" ,guile-lib)
1079          ("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
1080       (inputs
1081        `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))
1082          ("sqlite" ,sqlite)
1083          ("sqitch" ,sqitch)))
1084       (propagated-inputs
1085        `(("guile-fibers" ,guile-fibers)
1086          ("guile-prometheus" ,guile-prometheus)
1087          ("guile-gcrypt" ,guile-gcrypt)
1088          ("guile-json" ,guile-json-4)
1089          ("guile-lib" ,guile-lib)
1090          ("guile-lzlib" ,guile-lzlib)
1091          ("guile-zlib" ,guile-zlib)
1092          ("guile-sqlite3" ,guile-sqlite3)
1093          ("guix" ,guix)
1094          ("gnutls" ,gnutls)))
1095       (home-page "https://git.cbaines.net/guix/build-coordinator/")
1096       (synopsis "Tool to help build derivations")
1097       (description
1098        "The Guix Build Coordinator helps with performing lots of builds across
1099 potentially many machines, and with doing something with the results and
1100 outputs of those builds.")
1101       (license license:gpl3+))))
1102
1103 (define-public guix-jupyter
1104   (package
1105     (name "guix-jupyter")
1106     (version "0.1.0")
1107     (home-page "https://gitlab.inria.fr/guix-hpc/guix-kernel")
1108     (source (origin
1109               (method git-fetch)
1110               (uri (git-reference (url home-page)
1111                                   (commit (string-append "v" version))))
1112               (sha256
1113                (base32
1114                 "01z7jjkc7r7lj6637rcgpz40v8xqqyfp6871h94yvcnwm7zy9h1n"))
1115               (modules '((guix build utils)))
1116               (snippet
1117                '(begin
1118                   ;; Allow builds with Guile 3.0.
1119                   (substitute* "configure.ac"
1120                     (("^GUILE_PKG.*")
1121                      "GUILE_PKG([3.0 2.2])\n"))
1122
1123                   ;; Avoid name clash and build failure now that
1124                   ;; 'define-json-mapping' is also provided by Guile-JSON, as
1125                   ;; of version 4.3.
1126                   (substitute* (find-files "." "\\.scm$")
1127                     (("define-json-mapping")
1128                      "define-json-mapping*")
1129                     (("<=>")
1130                      "<->"))
1131                   #t))
1132               (file-name (string-append "guix-jupyter-" version "-checkout"))))
1133     (build-system gnu-build-system)
1134     (arguments
1135      `(#:modules ((srfi srfi-26)
1136                   (ice-9 match)
1137                   (ice-9 popen)
1138                   (ice-9 rdelim)
1139                   (guix build utils)
1140                   (guix build gnu-build-system))
1141        #:phases
1142        (modify-phases %standard-phases
1143          (add-after 'install 'sed-kernel-json
1144            (lambda* (#:key inputs outputs #:allow-other-keys)
1145              (let* ((out   (assoc-ref outputs "out"))
1146                     (guix  (assoc-ref inputs  "guix"))
1147                     (guile (assoc-ref inputs  "guile"))
1148                     (json  (assoc-ref inputs  "guile-json"))
1149                     (git   (assoc-ref inputs  "guile-git"))
1150                     (bs    (assoc-ref inputs  "guile-bytestructures"))
1151                     (s-zmq (assoc-ref inputs  "guile-simple-zmq"))
1152                     (gcrypt (assoc-ref inputs  "guile-gcrypt"))
1153                     (deps  (list out s-zmq guix json git bs gcrypt))
1154                     (effective
1155                      (read-line
1156                       (open-pipe* OPEN_READ
1157                                   (string-append guile "/bin/guile")
1158                                   "-c" "(display (effective-version))")))
1159                     (path (map (cut string-append "-L\", \"" <>
1160                                     "/share/guile/site/"
1161                                     effective)
1162                                deps))
1163                     (gopath (map (cut string-append "-C\", \"" <>
1164                                       "/lib/guile/" effective
1165                                       "/site-ccache")
1166                                  deps))
1167                     (kernel-dir (string-append out "/share/jupyter/kernels/guix/")))
1168                (substitute* (string-append kernel-dir "kernel.json")
1169                  (("-s")
1170                   (string-join
1171                    (list (string-join path "\",\n\t\t\"")
1172                          (string-join gopath "\",\n\t\t\"")
1173                          "-s")
1174                    "\",\n\t\t\""))
1175                  (("guix-jupyter-kernel.scm")
1176                   (string-append out "/share/guile/site/3.0/"
1177                                  "guix-jupyter-kernel.scm")))
1178                #t))))))
1179     (native-inputs
1180      `(("autoconf" ,autoconf)
1181        ("automake" ,automake)
1182        ("pkg-config" ,pkg-config)
1183
1184        ;; For testing.
1185        ("jupyter" ,jupyter)
1186        ("python-ipython" ,python-ipython)
1187        ("python-ipykernel" ,python-ipykernel)))
1188     (inputs
1189      `(("guix" ,guix)
1190        ("guile" ,@(assoc-ref (package-native-inputs guix) "guile"))))
1191     (propagated-inputs
1192      `(("guile-json" ,guile-json-4)
1193        ("guile-simple-zmq" ,guile-simple-zmq)
1194        ("guile-gcrypt" ,guile-gcrypt)))
1195     (synopsis "Guix kernel for Jupyter")
1196     (description
1197      "Guix-Jupyter is a Jupyter kernel.  It allows you to annotate notebooks
1198 with information about their software dependencies, such that code is executed
1199 in the right software environment.  Guix-Jupyter spawns the actual kernels
1200 such as @code{python-ipykernel} on behalf of the notebook user and runs them
1201 in an isolated environment, in separate namespaces.")
1202     (license license:gpl3+)))
1203
1204 (define-public gcab
1205   (package
1206     (name "gcab")
1207     (version "1.4")
1208     (source (origin
1209               (method url-fetch)
1210               (uri (string-append "mirror://gnome/sources/gcab/"
1211                                   version "/gcab-" version ".tar.xz"))
1212               (sha256
1213                (base32
1214                 "13q43iqld4l50yra45lhvkd376pn6qpk7rkx374zn8y9wsdzm9b7"))))
1215     (build-system meson-build-system)
1216     (native-inputs
1217      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
1218        ("intltool" ,intltool)
1219        ("pkg-config" ,pkg-config)
1220        ("vala" ,vala)))
1221     (inputs
1222      `(("glib" ,glib)
1223        ("zlib" ,zlib)))
1224     (arguments
1225      `(#:configure-flags
1226        ;; XXX This ‘documentation’ is for developers, and fails informatively:
1227        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
1228        (list "-Ddocs=false"
1229              "-Dintrospection=false")))
1230     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
1231     (synopsis "Microsoft Cabinet file manipulation library")
1232     (description
1233      "The libgcab library provides GObject functions to read, write, and modify
1234 Microsoft cabinet (.@dfn{CAB}) files.")
1235     (license (list license:gpl2+        ; tests/testsuite.at
1236                    license:lgpl2.1+)))) ; the rest
1237
1238 (define-public msitools
1239   (package
1240     (name "msitools")
1241     (version "0.100")
1242     (source (origin
1243               (method url-fetch)
1244               (uri (string-append "mirror://gnome/sources/msitools/"
1245                                   version "/msitools-" version ".tar.xz"))
1246               (sha256
1247                (base32
1248                 "1skq17qr2ic4qr3779j49byfm8rncwbsq9rj1a33ncn2m7isdwdv"))))
1249     (build-system gnu-build-system)
1250     (native-inputs
1251      `(("bison" ,bison)
1252        ("pkg-config" ,pkg-config)))
1253     (inputs
1254      `(("gcab" ,gcab)
1255        ("glib" ,glib)
1256        ("libgsf" ,libgsf)
1257        ("libxml2" ,libxml2)
1258        ("uuid" ,util-linux "lib")))
1259     (home-page "https://wiki.gnome.org/msitools")
1260     (synopsis "Windows Installer file manipulation tool")
1261     (description
1262      "msitools is a collection of command-line tools to inspect, extract, build,
1263 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
1264 for packaging and deployment of cross-compiled Windows applications.")
1265     (license license:lgpl2.1+)))
1266
1267 (define-public libostree
1268   (package
1269     (name "libostree")
1270     (version "2020.7")
1271     (source
1272      (origin
1273        (method url-fetch)
1274        (uri (string-append
1275              "https://github.com/ostreedev/ostree/releases/download/v"
1276              (version-major+minor version) "/libostree-" version ".tar.xz"))
1277        (sha256
1278         (base32 "0clriq2ypz1fycd6mpjyrhzid44svzpzw0amnank593h69b216ax"))))
1279     (build-system gnu-build-system)
1280     (arguments
1281      '(#:phases
1282        (modify-phases %standard-phases
1283          (add-before 'check 'pre-check
1284            (lambda _
1285              ;; Don't try to use the non-existing '/var/tmp' as test
1286              ;; directory.
1287              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
1288              #t)))
1289        ;; XXX: fails with:
1290        ;;     tap-driver.sh: missing test plan
1291        ;;     tap-driver.sh: internal error getting exit status
1292        ;;     tap-driver.sh: fatal: I/O or internal error
1293        #:tests? #f))
1294     (native-inputs
1295      `(("attr" ,attr)                   ; for tests
1296        ("bison" ,bison)
1297        ("glib:bin" ,glib "bin")         ; for 'glib-mkenums'
1298        ("gobject-introspection" ,gobject-introspection)
1299        ("pkg-config" ,pkg-config)
1300        ("xsltproc" ,libxslt)))
1301     (inputs
1302      `(("avahi" ,avahi)
1303        ("docbook-xml" ,docbook-xml-4.2)
1304        ("docbook-xsl" ,docbook-xsl)
1305        ("e2fsprogs" ,e2fsprogs)
1306        ("fuse" ,fuse)
1307        ("glib" ,glib)
1308        ("gpgme" ,gpgme)
1309        ("libarchive" ,libarchive)
1310        ("libsoup" ,libsoup)
1311        ("util-linux" ,util-linux)))
1312     (home-page "https://ostree.readthedocs.io/en/latest/")
1313     (synopsis "Operating system and container binary deployment and upgrades")
1314     (description
1315      "@code{libostree} is both a shared library and suite of command line
1316 tools that combines a \"git-like\" model for committing and downloading
1317 bootable file system trees, along with a layer for deploying them and managing
1318 the boot loader configuration.")
1319     (license license:lgpl2.0+)))
1320
1321 (define-public flatpak
1322   (package
1323    (name "flatpak")
1324    (version "1.8.2")
1325    (source
1326     (origin
1327      (method url-fetch)
1328      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1329                          version "/flatpak-" version ".tar.xz"))
1330      (sha256
1331       (base32 "1c45a0k7wx685n5b3ihv7dk0mm2kmwbw7cx8w5g2la62yxfn49kr"))))
1332
1333    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1334    ;; find the TLS backend in glib-networking.
1335    (build-system glib-or-gtk-build-system)
1336
1337    (arguments
1338     '(#:configure-flags
1339       (list
1340        "--enable-documentation=no" ;; FIXME
1341        "--enable-system-helper=no"
1342        "--localstatedir=/var"
1343        (string-append "--with-system-bubblewrap="
1344                       (assoc-ref %build-inputs "bubblewrap")
1345                       "/bin/bwrap")
1346        (string-append "--with-system-dbus-proxy="
1347                       (assoc-ref %build-inputs "xdg-dbus-proxy")
1348                       "/bin/xdg-dbus-proxy"))
1349       #:phases
1350       (modify-phases %standard-phases
1351         (add-after 'unpack 'fix-tests
1352           (lambda* (#:key inputs #:allow-other-keys)
1353             (copy-recursively
1354              (string-append (assoc-ref inputs "glibc-utf8-locales")
1355                             "/lib/locale/") "/tmp/locale")
1356             (for-each make-file-writable (find-files "/tmp"))
1357             (substitute* "tests/make-test-runtime.sh"
1358               (("cp `which.*") "echo guix\n")
1359               (("cp -r /usr/lib/locale/C\\.\\*")
1360                (string-append "mkdir ${DIR}/usr/lib/locale/en_US; \
1361 cp -r /tmp/locale/*/en_US.*")))
1362             (substitute* "tests/libtest.sh"
1363               (("/bin/kill") (which "kill"))
1364               (("/usr/bin/python3") (which "python3")))
1365             #t))
1366         ;; Many tests fail for unknown reasons, so we just run a few basic
1367         ;; tests.
1368         (replace 'check
1369           (lambda _
1370             (setenv "HOME" "/tmp")
1371             (invoke "make" "check"
1372                     "TESTS=tests/test-basic.sh tests/test-config.sh testcommon"))))))
1373     (native-inputs
1374     `(("bison" ,bison)
1375       ("dbus" ,dbus) ; for dbus-daemon
1376       ("gettext" ,gettext-minimal)
1377       ("glib:bin" ,glib "bin")          ; for glib-mkenums + gdbus-codegen
1378       ("glibc-utf8-locales" ,glibc-utf8-locales)
1379       ("gobject-introspection" ,gobject-introspection)
1380       ("libcap" ,libcap)
1381       ("pkg-config" ,pkg-config)
1382       ("python" ,python)
1383       ("python-pyparsing" ,python-pyparsing)
1384       ("socat" ,socat)
1385       ("which" ,which)))
1386    (propagated-inputs `(("glib-networking" ,glib-networking)
1387                         ("gnupg" ,gnupg)
1388                         ("gsettings-desktop-schemas"
1389                          ,gsettings-desktop-schemas)))
1390    (inputs
1391     `(("appstream-glib" ,appstream-glib)
1392       ("bubblewrap" ,bubblewrap)
1393       ("dconf" ,dconf)
1394       ("fuse" ,fuse)
1395       ("gdk-pixbuf" ,gdk-pixbuf)
1396       ("gpgme" ,gpgme)
1397       ("json-glib" ,json-glib)
1398       ("libarchive" ,libarchive)
1399       ("libostree" ,libostree)
1400       ("libseccomp" ,libseccomp)
1401       ("libsoup" ,libsoup)
1402       ("libxau" ,libxau)
1403       ("libxml2" ,libxml2)
1404       ("util-linux" ,util-linux)
1405       ("xdg-dbus-proxy" ,xdg-dbus-proxy)))
1406    (home-page "https://flatpak.org")
1407    (synopsis "System for building, distributing, and running sandboxed desktop
1408 applications")
1409    (description "Flatpak is a system for building, distributing, and running
1410 sandboxed desktop applications on GNU/Linux.")
1411    (license license:lgpl2.1+)))
1412
1413 (define-public akku
1414   (package
1415     (name "akku")
1416     (version "1.0.1")
1417     (source (origin
1418               (method git-fetch)
1419               (uri (git-reference
1420                     (url "https://gitlab.com/akkuscm/akku.git")
1421                     (commit (string-append "v" version))))
1422               (file-name (git-file-name name version))
1423               (sha256 (base32 "1dm32ws3nshnnscd7k75zswxxs1pp25y2q4k8j5ms241hz47by3c"))))
1424     (build-system gnu-build-system)
1425     (arguments
1426      '(#:phases (modify-phases %standard-phases
1427                   (replace 'bootstrap
1428                     (lambda* (#:key outputs #:allow-other-keys)
1429                       (for-each patch-shebang
1430                                 '("bootstrap"
1431                                   ".akku/env"))
1432                       (let* ((home "/tmp")
1433                              (datadir (string-append home "/.local/share/akku/")))
1434                         (mkdir-p datadir)
1435                         (invoke "touch" (string-append datadir "index.db"))
1436                         (setenv "HOME" home))
1437                       (invoke "./bootstrap")
1438                       #t))
1439                   (add-after 'install 'wrap-executables
1440                     (lambda* (#:key outputs inputs #:allow-other-keys)
1441                       (let ((out (assoc-ref outputs "out"))
1442                             (curl (assoc-ref inputs "curl")))
1443                         (wrap-program (string-append out "/bin/akku")
1444                           `("LD_LIBRARY_PATH" ":" prefix (,(string-append curl "/lib"))))
1445                         #t))))))
1446     (native-inputs
1447      `(("which" ,which)
1448        ("autoconf" ,autoconf)
1449        ("automake" ,automake)
1450        ("pkg-config" ,pkg-config)))
1451     (inputs
1452      `(("guile" ,guile-3.0)
1453        ("curl" ,curl)))
1454     (home-page "https://akkuscm.org/")
1455     (synopsis "Language package manager for Scheme")
1456     (description
1457      "Akku.scm is a project-based language package manager for R6RS and R7RS Scheme.
1458 It is mainly meant for programmers who develop portable programs or libraries in Scheme,
1459 but could potentially work for end-users of those programs.  It also has a translator
1460 from R7RS, which allows most R7RS code to run on R6RS implementations.")
1461     (license license:gpl3+)))