gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Vagrant Cascadian <vagrant@reproducible-builds.org>
  14 ;;;
  15 ;;; This file is part of GNU Guix.
  16 ;;;
  17 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  18 ;;; under the terms of the GNU General Public License as published by
  19 ;;; the Free Software Foundation; either version 3 of the License, or (at
  20 ;;; your option) any later version.
  21 ;;;
  22 ;;; GNU Guix is distributed in the hope that it will be useful, but
  23 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  24 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  25 ;;; GNU General Public License for more details.
  26 ;;;
  27 ;;; You should have received a copy of the GNU General Public License
  28 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  29
  30 (define-module (gnu packages package-management)
  31   #:use-module (gnu packages)
  32   #:use-module (gnu packages acl)
  33   #:use-module (gnu packages attr)
  34   #:use-module (gnu packages avahi)
  35   #:use-module (gnu packages autotools)
  36   #:use-module (gnu packages backup)
  37   #:use-module (gnu packages base)
  38   #:use-module (gnu packages bdw-gc)
  39   #:use-module (gnu packages bison)
  40   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  41   #:use-module (gnu packages check)
  42   #:use-module (gnu packages compression)
  43   #:use-module (gnu packages cpio)
  44   #:use-module (gnu packages crypto)
  45   #:use-module (gnu packages curl)
  46   #:use-module (gnu packages dbm)
  47   #:use-module (gnu packages docbook)
  48   #:use-module (gnu packages file)
  49   #:use-module (gnu packages gettext)
  50   #:use-module (gnu packages glib)
  51   #:use-module (gnu packages gnome)
  52   #:use-module (gnu packages gnupg)
  53   #:use-module (gnu packages graphviz)
  54   #:use-module (gnu packages gtk)
  55   #:use-module (gnu packages guile)
  56   #:use-module (gnu packages guile-xyz)
  57   #:use-module (gnu packages linux)
  58   #:use-module (gnu packages lisp)
  59   #:use-module (gnu packages man)
  60   #:use-module (gnu packages nettle)
  61   #:use-module (gnu packages nss)
  62   #:use-module (gnu packages patchutils)
  63   #:use-module (gnu packages perl)
  64   #:use-module (gnu packages perl-check)
  65   #:use-module (gnu packages pkg-config)
  66   #:use-module (gnu packages popt)
  67   #:use-module (gnu packages python)
  68   #:use-module (gnu packages python-web)
  69   #:use-module (gnu packages python-xyz)
  70   #:use-module (gnu packages serialization)
  71   #:use-module (gnu packages sqlite)
  72   #:use-module (gnu packages ssh)
  73   #:use-module (gnu packages texinfo)
  74   #:use-module (gnu packages time)
  75   #:use-module (gnu packages tls)
  76   #:use-module (gnu packages vim)
  77   #:use-module (gnu packages virtualization)
  78   #:use-module (gnu packages web)
  79   #:use-module (gnu packages xml)
  80   #:use-module (gnu packages xorg)
  81   #:use-module (guix build-system glib-or-gtk)
  82   #:use-module (guix build-system gnu)
  83   #:use-module (guix build-system meson)
  84   #:use-module (guix build-system python)
  85   #:use-module (guix download)
  86   #:use-module (guix gexp)
  87   #:use-module (guix git-download)
  88   #:use-module ((guix licenses) #:prefix license:)
  89   #:use-module (guix packages)
  90   #:use-module (guix utils)
  91   #:use-module (ice-9 match)
  92   #:use-module (srfi srfi-1))
  93
  94 (define (boot-guile-uri arch)
  95   "Return the URI for the bootstrap Guile tarball for ARCH."
  96   (cond ((string=? "armhf" arch)
  97          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  98                         arch "-linux"
  99                         "/20150101/guile-2.0.11.tar.xz"))
 100         ((string=? "aarch64" arch)
 101          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 102                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 103         (else
 104          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 105                         arch "-linux"
 106                         "/20131110/guile-2.0.9.tar.xz"))))
 107
 108 (define-public guix
 109   ;; Latest version of Guix, which may or may not correspond to a release.
 110   ;; Note: the 'update-guix-package.scm' script expects this definition to
 111   ;; start precisely like this.
 112   (let ((version "0.16.0")
 113         (commit "d78bfd27bdc449cf93fe4c5497d242c2da1aeac8")
 114         (revision 12))
 115     (package
 116       (name "guix")
 117
 118       (version (if (zero? revision)
 119                    version
 120                    (string-append version "-"
 121                                   (number->string revision)
 122                                   "." (string-take commit 7))))
 123       (source (origin
 124                 (method git-fetch)
 125                 (uri (git-reference
 126                       (url "https://git.savannah.gnu.org/r/guix.git")
 127                       (commit commit)))
 128                 (sha256
 129                  (base32
 130                   "1i24snn7dq7r8c3mf4waz13k11lglhgvx0zb6xqiqiplmb6f7q6n"))
 131                 (file-name (string-append "guix-" version "-checkout"))))
 132       (build-system gnu-build-system)
 133       (arguments
 134        `(#:configure-flags (list
 135                             "--localstatedir=/var"
 136                             "--sysconfdir=/etc"
 137                             (string-append "--with-bash-completion-dir="
 138                                            (assoc-ref %outputs "out")
 139                                            "/etc/bash_completion.d")
 140
 141                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 142                             ;; we don't keep a reference to Graphviz, whose
 143                             ;; closure is pretty big (too big for the Guix
 144                             ;; system installation image.)
 145                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 146
 147                             ;; To avoid problems with the length of shebangs,
 148                             ;; choose a fixed-width and short directory name
 149                             ;; for tests.
 150                             "ac_cv_guix_test_root=/tmp/guix-tests")
 151          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 152
 153          #:modules ((guix build gnu-build-system)
 154                     (guix build utils)
 155                     (srfi srfi-26)
 156                     (ice-9 popen)
 157                     (ice-9 rdelim))
 158
 159          #:phases (modify-phases %standard-phases
 160                     (replace 'bootstrap
 161                       (lambda _
 162                         ;; Make sure 'msgmerge' can modify the PO files.
 163                         (for-each (lambda (po)
 164                                     (chmod po #o666))
 165                                   (find-files "." "\\.po$"))
 166
 167                         (patch-shebang "build-aux/git-version-gen")
 168
 169                         (call-with-output-file ".tarball-version"
 170                           (lambda (port)
 171                             (display ,version port)))
 172
 173                         (invoke "sh" "bootstrap")))
 174                     (add-before 'check 'copy-bootstrap-guile
 175                       (lambda* (#:key system inputs #:allow-other-keys)
 176                         ;; Copy the bootstrap guile tarball in the store used
 177                         ;; by the test suite.
 178                         (define (intern tarball)
 179                           (let ((base (strip-store-file-name tarball)))
 180                             (copy-file tarball base)
 181                             (invoke "./test-env" "guix" "download"
 182                                     (string-append "file://" (getcwd)
 183                                                    "/" base))
 184                             (delete-file base)))
 185
 186
 187                         (intern (assoc-ref inputs "boot-guile"))
 188
 189                         ;; On x86_64 some tests need the i686 Guile.
 190                         ,@(if (and (not (%current-target-system))
 191                                    (string=? (%current-system)
 192                                              "x86_64-linux"))
 193                               '((intern (assoc-ref inputs "boot-guile/i686")))
 194                               '())
 195                         #t))
 196                     (add-after 'unpack 'disable-failing-tests
 197                       ;; XXX FIXME: These tests fail within the build container.
 198                       (lambda _
 199                         (substitute* "tests/syscalls.scm"
 200                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 201                            (string-append "(test-skip 1)\n" all)))
 202                         (substitute* "tests/containers.scm"
 203                           (("^\\(test-(assert|equal)" all)
 204                            (string-append "(test-skip 1)\n" all)))
 205                         (when (file-exists? "tests/guix-environment-container.sh")
 206                           (substitute* "tests/guix-environment-container.sh"
 207                             (("guix environment --version")
 208                              "exit 77\n")))
 209                         #t))
 210                     (add-before 'check 'set-SHELL
 211                       (lambda _
 212                         ;; 'guix environment' tests rely on 'SHELL' having a
 213                         ;; correct value, so set it.
 214                         (setenv "SHELL" (which "sh"))
 215                         #t))
 216                     (add-after 'install 'wrap-program
 217                       (lambda* (#:key inputs outputs #:allow-other-keys)
 218                         ;; Make sure the 'guix' command finds GnuTLS,
 219                         ;; Guile-JSON, and Guile-Git automatically.
 220                         (let* ((out    (assoc-ref outputs "out"))
 221                                (guile  (assoc-ref inputs "guile"))
 222                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 223                                (json   (assoc-ref inputs "guile-json"))
 224                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 225                                (git    (assoc-ref inputs "guile-git"))
 226                                (bs     (assoc-ref inputs
 227                                                   "guile-bytestructures"))
 228                                (ssh    (assoc-ref inputs "guile-ssh"))
 229                                (gnutls (assoc-ref inputs "gnutls"))
 230                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 231                                (deps   (list gcrypt json sqlite gnutls
 232                                              git bs ssh))
 233                                (effective
 234                                 (read-line
 235                                  (open-pipe* OPEN_READ
 236                                              (string-append guile "/bin/guile")
 237                                              "-c" "(display (effective-version))")))
 238                                (path   (string-join
 239                                         (map (cut string-append <>
 240                                                   "/share/guile/site/"
 241                                                   effective)
 242                                              (delete #f deps))
 243                                         ":"))
 244                                (gopath (string-join
 245                                         (map (cut string-append <>
 246                                                   "/lib/guile/" effective
 247                                                   "/site-ccache")
 248                                              (delete #f deps))
 249                                         ":"))
 250                                (locpath (string-append locales "/lib/locale")))
 251
 252                           (wrap-program (string-append out "/bin/guix")
 253                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 254                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 255                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 256
 257                           #t))))))
 258       (native-inputs `(("pkg-config" ,pkg-config)
 259
 260                        ;; XXX: Keep the development inputs here even though
 261                        ;; they're unnecessary, just so that 'guix environment
 262                        ;; guix' always contains them.
 263                        ("autoconf" ,autoconf-wrapper)
 264                        ("automake" ,automake)
 265                        ("gettext" ,gettext-minimal)
 266                        ("texinfo" ,texinfo)
 267                        ("graphviz" ,graphviz)
 268                        ("help2man" ,help2man)
 269                        ("po4a" ,po4a)))
 270       (inputs
 271        `(("bzip2" ,bzip2)
 272          ("gzip" ,gzip)
 273          ("zlib" ,zlib)                           ;for 'guix publish'
 274
 275          ("sqlite" ,sqlite)
 276          ("libgcrypt" ,libgcrypt)
 277
 278          ("guile" ,guile-2.2)
 279
 280          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 281          ;; have it here.
 282          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 283          ;; Some of the tests use "unshare" when it is available.
 284          ("util-linux" ,util-linux)
 285          ,@(if (and (not (%current-target-system))
 286                     (string=? (%current-system) "x86_64-linux"))
 287                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 288                '())
 289
 290          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 291       (propagated-inputs
 292        `(("gnutls" ,gnutls)
 293          ("guile-gcrypt" ,guile-gcrypt)
 294          ("guile-json" ,guile-json)
 295          ("guile-sqlite3" ,guile-sqlite3)
 296          ("guile-ssh" ,guile-ssh)
 297          ("guile-git" ,guile-git)))
 298
 299       (home-page "https://www.gnu.org/software/guix/")
 300       (synopsis "Functional package manager for installed software packages and versions")
 301       (description
 302        "GNU Guix is a functional package manager for the GNU system, and is
 303 also a distribution thereof.  It includes a virtual machine image.  Besides
 304 the usual package management features, it also supports transactional
 305 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 306 the Nix package manager.")
 307       (license license:gpl3+)
 308       (properties '((ftp-server . "alpha.gnu.org"))))))
 309
 310 (define-public guix-daemon
 311   ;; This package is for internal consumption: it allows us to quickly build
 312   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 313   ;; pull'.
 314   (package
 315     (inherit guix)
 316     (properties `((hidden? . #t)))
 317     (name "guix-daemon")
 318
 319     ;; Use a minimum set of dependencies.
 320     (native-inputs
 321      (fold alist-delete (package-native-inputs guix)
 322            '("po4a" "graphviz" "help2man")))
 323     (inputs
 324      `(("gnutls" ,gnutls)
 325        ("guile-git" ,guile-git)
 326        ("guile-json" ,guile-json)
 327        ("guile-gcrypt" ,guile-gcrypt)
 328        ,@(fold alist-delete (package-inputs guix)
 329                '("boot-guile" "boot-guile/i686" "util-linux"))))
 330
 331     (propagated-inputs '())
 332
 333     (arguments
 334      (substitute-keyword-arguments (package-arguments guix)
 335        ((#:configure-flags flags '())
 336         ;; Pretend we have those libraries; we don't actually need them.
 337         `(append ,flags
 338                  '("guix_cv_have_recent_guile_sqlite3=yes"
 339                    "guix_cv_have_recent_guile_ssh=yes")))
 340        ((#:tests? #f #f)
 341         #f)
 342        ((#:phases phases '%standard-phases)
 343         `(modify-phases ,phases
 344            (replace 'build
 345              (lambda _
 346                (invoke "make" "nix/libstore/schema.sql.hh")
 347                (invoke "make" "-j" (number->string
 348                                     (parallel-job-count))
 349                        "guix-daemon")))
 350            (delete 'copy-bootstrap-guile)
 351            (replace 'install
 352              (lambda* (#:key outputs #:allow-other-keys)
 353                (invoke "make" "install-binPROGRAMS"
 354                        "install-nodist_pkglibexecSCRIPTS")
 355
 356                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 357                ;; Here we use a questionable hack where we hard-code root's
 358                ;; current guix, which could be wrong (XXX).  Note that scripts
 359                ;; like 'guix perform-download' do not run as root so we assume
 360                ;; that they have access to /var/guix/profiles/per-user/root.
 361                (let ((out (assoc-ref outputs "out")))
 362                  (substitute* (find-files (string-append out "/libexec"))
 363                    (("exec \".*/bin/guix\"")
 364                     "exec \"${GUIX:-/var/guix/profiles/per-user/root/current-guix/bin/guix}\""))
 365                  #t)))
 366            (delete 'wrap-program)))))))
 367
 368 (define-public guile2.0-guix
 369   (deprecated-package "guile2.0-guix" guix))
 370
 371 (define-public guix-minimal
 372   ;; A version of Guix which is built with the minimal set of dependencies, as
 373   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 374   ;; marked as hidden.
 375   (hidden-package
 376    (package
 377      (inherit guix)
 378      (name "guix-minimal")
 379      (inputs
 380       `(("guile" ,guile-2.2)
 381         ,@(alist-delete "guile" (package-inputs guix))))
 382      (propagated-inputs
 383       (fold alist-delete
 384             (package-propagated-inputs guix)
 385             '("guile-ssh"))))))
 386
 387 (define (source-file? file stat)
 388   "Return true if FILE is likely a source file, false if it is a typical
 389 generated file."
 390   (define (wrong-extension? file)
 391     (or (string-suffix? "~" file)
 392         (member (file-extension file)
 393                 '("o" "a" "lo" "so" "go"))))
 394
 395   (match (basename file)
 396     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 397      #f)
 398     ((? wrong-extension?)
 399      #f)
 400     (_
 401      #t)))
 402
 403 (define-public current-guix-package
 404   ;; This parameter allows callers to override the package that 'current-guix'
 405   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 406   ;; for instance because it's not running from a source code checkout.
 407   (make-parameter #f))
 408
 409 (define-public current-guix
 410   (let* ((repository-root (delay (canonicalize-path
 411                                   (string-append (current-source-directory)
 412                                                  "/../.."))))
 413          (select? (delay (or (git-predicate (force repository-root))
 414                              source-file?))))
 415     (lambda ()
 416       "Return a package representing Guix built from the current source tree.
 417 This works by adding the current source tree to the store (after filtering it
 418 out) and returning a package that uses that as its 'source'."
 419       (or (current-guix-package)
 420           (package
 421             (inherit guix)
 422             (version (string-append (package-version guix) "+"))
 423             (source (local-file (force repository-root) "guix-current"
 424                                 #:recursive? #t
 425                                 #:select? (force select?))))))))
 426
 427 \f
 428 ;;;
 429 ;;; Other tools.
 430 ;;;
 431
 432 (define-public nix
 433   (package
 434     (name "nix")
 435     (version "2.0.4")
 436     (source (origin
 437              (method url-fetch)
 438              (uri (string-append "http://nixos.org/releases/nix/nix-"
 439                                  version "/nix-" version ".tar.xz"))
 440              (sha256
 441               (base32
 442                "0ss9svxlh1pvrdmnqjvjyqjmbqmrdbyfarvbb14i9d4bggzl0r8n"))))
 443     (build-system gnu-build-system)
 444     (native-inputs `(("pkg-config" ,pkg-config)))
 445     (inputs `(("curl" ,curl)
 446               ("bzip2" ,bzip2)
 447               ("libgc" ,libgc)
 448               ("libseccomp" ,libseccomp)
 449               ("libsodium" ,libsodium)
 450               ("openssl" ,openssl)
 451               ("sqlite" ,sqlite)
 452               ("xz" ,xz)))
 453     (home-page "https://nixos.org/nix/")
 454     (synopsis "The Nix package manager")
 455     (description
 456      "Nix is a purely functional package manager.  This means that it treats
 457 packages like values in purely functional programming languages such as
 458 Haskell—they are built by functions that don't have side-effects, and they
 459 never change after they have been built.  Nix stores packages in the Nix
 460 store, usually the directory /nix/store, where each package has its own unique
 461 sub-directory.")
 462     (license license:lgpl2.1+)))
 463
 464 (define-public stow
 465   (package
 466     (name "stow")
 467     (version "2.2.2")
 468     (source (origin
 469               (method url-fetch)
 470               (uri (string-append "mirror://gnu/stow/stow-"
 471                                   version ".tar.gz"))
 472               (sha256
 473                (base32
 474                 "1pvky9fayms4r6fhns8jd0vavszd7d979w62vfd5n88v614pdxz2"))))
 475     (build-system gnu-build-system)
 476     (inputs
 477      `(("perl" ,perl)))
 478     (native-inputs
 479      `(("perl-test-simple" ,perl-test-simple)
 480        ("perl-test-output" ,perl-test-output)
 481        ("perl-capture-tiny" ,perl-capture-tiny)
 482        ("perl-io-stringy" ,perl-io-stringy)))
 483     (home-page "https://www.gnu.org/software/stow/")
 484     (synopsis "Managing installed software packages")
 485     (description
 486      "GNU Stow is a symlink manager.  It generates symlinks to directories
 487 of data and makes them appear to be merged into the same directory.  It is
 488 typically used for managing software packages installed from source, by
 489 letting you install them apart in distinct directories and then create
 490 symlinks to the files in a common directory such as /usr/local.")
 491     (license license:gpl2+)))
 492
 493 (define-public rpm
 494   (package
 495     (name "rpm")
 496     (version "4.14.2")
 497     (source (origin
 498               (method url-fetch)
 499               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 500                                   (version-major+minor version) ".x/rpm-"
 501                                   version ".tar.bz2"))
 502               (sha256
 503                (base32
 504                 "0armd7dqr8bl0isx8l4xlylm7dikasmxhhcbz336fkp2x30w5jw0"))))
 505     (build-system gnu-build-system)
 506     (arguments
 507      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 508                            "--enable-python"
 509                            "--without-lua")
 510        #:phases (modify-phases %standard-phases
 511                   (add-before 'configure 'set-nss-library-path
 512                     (lambda* (#:key inputs #:allow-other-keys)
 513                       (let ((nss (assoc-ref inputs "nss")))
 514                         (setenv "LIBRARY_PATH"
 515                                 (string-append (getenv "LIBRARY_PATH") ":"
 516                                                nss "/lib/nss"))
 517                         #t))))))
 518     (native-inputs
 519      `(("pkg-config" ,pkg-config)))
 520     (inputs
 521      `(("python" ,python-2)
 522        ("xz" ,xz)
 523        ("bdb" ,bdb)
 524        ("popt" ,popt)
 525        ("nss" ,nss)
 526        ("nspr" ,nspr)
 527        ("libarchive" ,libarchive)
 528        ("nettle" ,nettle)            ;XXX: actually a dependency of libarchive
 529        ("file" ,file)
 530        ("bzip2" ,bzip2)
 531        ("zlib" ,zlib)
 532        ("cpio" ,cpio)))
 533     (home-page "http://rpm.org/")
 534     (synopsis "The RPM Package Manager")
 535     (description
 536      "The RPM Package Manager (RPM) is a command-line driven package
 537 management system capable of installing, uninstalling, verifying, querying,
 538 and updating computer software packages.  Each software package consists of an
 539 archive of files along with information about the package like its version, a
 540 description.  There is also a library permitting developers to manage such
 541 transactions from C or Python.")
 542
 543     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 544     (license license:gpl2+)))
 545
 546 (define-public diffoscope
 547   (package
 548     (name "diffoscope")
 549     (version "113")
 550     (source (origin
 551               (method url-fetch)
 552               (uri (pypi-uri name version))
 553               (sha256
 554                (base32
 555                 "10wjri6vsqxf2nb7jjhsq38qlpf407b4qrdczrk696aa1v71i44w"))))
 556     (build-system python-build-system)
 557     (arguments
 558      `(#:phases (modify-phases %standard-phases
 559                   ;; setup.py mistakenly requires python-magic from PyPi, even
 560                   ;; though the Python bindings of `file` are sufficient.
 561                   ;; https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815844
 562                   (add-after 'unpack 'dependency-on-python-magic
 563                     (lambda _
 564                       (substitute* "setup.py"
 565                         (("'python-magic',") ""))))
 566                   ;; This test is broken because our `file` package has a
 567                   ;; bug in berkeley-db file type detection.
 568                   (add-after 'unpack 'remove-berkeley-test
 569                     (lambda _
 570                       (delete-file "tests/comparators/test_berkeley_db.py")
 571                       #t))
 572                   (add-after 'unpack 'embed-tool-references
 573                     (lambda* (#:key inputs #:allow-other-keys)
 574                       (substitute* "diffoscope/comparators/utils/compare.py"
 575                         (("\\['xxd',")
 576                          (string-append "['" (which "xxd") "',")))
 577                       (substitute* "diffoscope/comparators/elf.py"
 578                         (("@tool_required\\('readelf'\\)") "")
 579                         (("get_tool_name\\('readelf'\\)")
 580                          (string-append "'" (which "readelf") "'")))
 581                       (substitute* "diffoscope/comparators/directory.py"
 582                         (("@tool_required\\('stat'\\)") "")
 583                         (("@tool_required\\('getfacl'\\)") "")
 584                         (("\\['stat',")
 585                          (string-append "['" (which "stat") "',"))
 586                         (("\\['getfacl',")
 587                          (string-append "['" (which "getfacl") "',")))
 588                       #t))
 589                   (add-before 'check 'delete-failing-test
 590                     (lambda _
 591                       (delete-file "tests/test_tools.py") ;this requires /sbin to be on the path
 592                       #t)))))
 593     (inputs `(("rpm" ,rpm)                        ;for rpm-python
 594               ("python-file" ,python-file)
 595               ("python-debian" ,python-debian)
 596               ("python-libarchive-c" ,python-libarchive-c)
 597               ("python-tlsh" ,python-tlsh)
 598               ("acl" ,acl)                        ;for getfacl
 599               ("colordiff" ,colordiff)
 600               ("xxd" ,xxd)
 601
 602               ;; Below are modules used for tests.
 603               ("python-pytest" ,python-pytest)
 604               ("python-chardet" ,python-chardet)))
 605     (home-page "https://diffoscope.org/")
 606     (synopsis "Compare files, archives, and directories in depth")
 607     (description
 608      "Diffoscope tries to get to the bottom of what makes files or directories
 609 different.  It recursively unpacks archives of many kinds and transforms
 610 various binary formats into more human readable forms to compare them.  It can
 611 compare two tarballs, ISO images, or PDFs just as easily.")
 612     (license license:gpl3+)))
 613
 614 (define-public trydiffoscope
 615  (package
 616    (name "trydiffoscope")
 617    (version "67.0.1")
 618    (source
 619     (origin
 620       (method git-fetch)
 621       (uri (git-reference
 622             (url "https://salsa.debian.org/reproducible-builds/trydiffoscope.git")
 623             (commit version)))
 624       (file-name (git-file-name name version))
 625       (sha256
 626        (base32
 627         "03b66cjii7l2yiwffj6ym6mycd5drx7prfp4j2550281pias6mjh"))))
 628     (arguments
 629      `(#:phases
 630        (modify-phases %standard-phases
 631          (add-after 'install 'install-doc
 632            (lambda* (#:key outputs #:allow-other-keys)
 633              (let* ((share (string-append (assoc-ref outputs "out") "/share/")))
 634                (mkdir-p (string-append share "/man/man1/" ))
 635                (invoke "rst2man.py"
 636                        "trydiffoscope.1.rst"
 637                        (string-append share "/man/man1/trydiffoscope.1"))
 638                (mkdir-p (string-append share "/doc/" ,name "-" ,version))
 639                (install-file "./README.rst"
 640                           (string-append share "/doc/" ,name "-" ,version)))
 641              #t)))))
 642     (propagated-inputs
 643      `(("python-requests" ,python-requests)))
 644     (native-inputs
 645      `(("gzip" ,gzip)
 646        ("python-docutils" ,python-docutils)))
 647     (build-system python-build-system)
 648     (home-page "https://try.diffoscope.org")
 649     (synopsis "Client for remote diffoscope service")
 650     (description "This is a client for the @url{https://try.diffoscope.org,
 651 remote diffoscope service}.
 652
 653 Diffoscope tries to get to the bottom of what makes files or directories
 654 different.  It recursively unpacks archives of many kinds and transforms
 655 various binary formats into more human readable forms to compare them.  It can
 656 compare two tarballs, ISO images, or PDFs just as easily.
 657
 658 Results are displayed by default, stored as local text or html files, or made
 659 available via a URL on @url{https://try.diffoscope.org}.  Results stored on the
 660 server are purged after 30 days.")
 661     (license license:gpl3+)))
 662
 663 (define-public python-anaconda-client
 664   (package
 665     (name "python-anaconda-client")
 666     (version "1.6.3")
 667     (source
 668      (origin
 669        (method url-fetch)
 670        (uri (string-append "https://github.com/Anaconda-Platform/"
 671                            "anaconda-client/archive/" version ".tar.gz"))
 672        (file-name (string-append name "-" version ".tar.gz"))
 673        (sha256
 674         (base32
 675          "1wv4wi6k5jz7rlwfgvgfdizv77x3cr1wa2aj0k1595g7fbhkjhz2"))))
 676     (build-system python-build-system)
 677     (propagated-inputs
 678      `(("python-pyyaml" ,python-pyyaml)
 679        ("python-requests" ,python-requests)
 680        ("python-clyent" ,python-clyent)))
 681     (native-inputs
 682      `(("python-pytz" ,python-pytz)
 683        ("python-dateutil" ,python-dateutil)
 684        ("python-mock" ,python-mock)
 685        ("python-coverage" ,python-coverage)
 686        ("python-pillow" ,python-pillow)))
 687     (arguments
 688      `(#:phases
 689        (modify-phases %standard-phases
 690          ;; This is needed for some tests.
 691          (add-before 'check 'set-up-home
 692            (lambda* _ (setenv "HOME" "/tmp") #t))
 693          (add-before 'check 'remove-network-tests
 694            (lambda* _
 695              ;; Remove tests requiring a network connection
 696              (let ((network-tests '("tests/test_upload.py"
 697                                     "tests/test_authorizations.py"
 698                                     "tests/test_login.py"
 699                                     "tests/test_whoami.py"
 700                                     "utils/notebook/tests/test_data_uri.py"
 701                                     "utils/notebook/tests/test_base.py"
 702                                     "utils/notebook/tests/test_downloader.py"
 703                                     "inspect_package/tests/test_conda.py")))
 704                (with-directory-excursion "binstar_client"
 705                  (for-each delete-file network-tests)))
 706              #t)))))
 707     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 708     (synopsis "Anaconda Cloud command line client library")
 709     (description
 710      "Anaconda Cloud command line client library provides an interface to
 711 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 712 environments.")
 713     (license license:bsd-3)))
 714
 715 (define-public python2-anaconda-client
 716   (package-with-python2 python-anaconda-client))
 717
 718 (define-public python-conda
 719   (package
 720     (name "python-conda")
 721     (version "4.3.16")
 722     (source
 723      (origin
 724        (method url-fetch)
 725        (uri (string-append "https://github.com/conda/conda/archive/"
 726                            version ".tar.gz"))
 727        (file-name (string-append name "-" version ".tar.gz"))
 728        (sha256
 729         (base32
 730          "1jq8hyrc5npb5sf4vw6s6by4602yj8f79vzpbwdfgpkn02nfk1dv"))))
 731     (build-system python-build-system)
 732     (arguments
 733      `(#:phases
 734        (modify-phases %standard-phases
 735          (add-before 'build 'create-version-file
 736            (lambda _
 737              (with-output-to-file "conda/.version"
 738                (lambda () (display ,version)))
 739              #t))
 740          (add-before 'check 'remove-failing-tests
 741            (lambda _
 742              ;; These tests require internet/network access
 743              (let ((network-tests '("test_cli.py"
 744                                     "test_create.py"
 745                                     "test_export.py"
 746                                     "test_fetch.py"
 747                                     "test_history.py"
 748                                     "test_info.py"
 749                                     "test_install.py"
 750                                     "test_priority.py"
 751                                     "conda_env/test_cli.py"
 752                                     "conda_env/test_create.py"
 753                                     "conda_env/specs/test_notebook.py"
 754                                     "conda_env/utils/test_notebooks.py"
 755                                     "core/test_index.py"
 756                                     "core/test_repodata.py")))
 757                (with-directory-excursion "tests"
 758                  (for-each delete-file network-tests)
 759
 760                  ;; FIXME: This test creates a file, then deletes it and tests
 761                  ;; that the file was deleted.  For some reason it fails when
 762                  ;; building with guix, but does not when you run it in the
 763                  ;; directory left when you build with the --keep-failed
 764                  ;; option
 765                  (delete-file "gateways/disk/test_delete.py")
 766                  #t))))
 767          (replace 'check
 768            (lambda _
 769              (setenv "HOME" "/tmp")
 770              (invoke "py.test"))))))
 771     (native-inputs
 772      `(("python-cytoolz" ,python-cytoolz)
 773        ("python-ruamel.yaml" ,python-ruamel.yaml)
 774        ("python-requests" ,python-requests)
 775        ("python-pycosat" ,python-pycosat)
 776        ("python-pytest" ,python-pytest)
 777        ("python-responses" ,python-responses)
 778        ("python-pyyaml" ,python-pyyaml)
 779        ("python-anaconda-client" ,python-anaconda-client)))
 780     (home-page "https://github.com/conda/conda")
 781     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 782     (description
 783      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 784 is the package manager used by Anaconda installations, but it may be used for
 785 other systems as well.  Conda makes environments first-class citizens, making
 786 it easy to create independent environments even for C libraries.  Conda is
 787 written entirely in Python.
 788
 789 This package provides Conda as a library.")
 790     (license license:bsd-3)))
 791
 792 (define-public python2-conda
 793   (let ((base (package-with-python2
 794                (strip-python2-variant python-conda))))
 795     (package (inherit base)
 796              (native-inputs
 797               `(("python2-enum34" ,python2-enum34)
 798                 ,@(package-native-inputs base))))))
 799
 800 (define-public conda
 801   (package (inherit python-conda)
 802     (name "conda")
 803     (arguments
 804      (substitute-keyword-arguments (package-arguments python-conda)
 805        ((#:phases phases)
 806         `(modify-phases ,phases
 807            (replace 'build
 808              (lambda* (#:key outputs #:allow-other-keys)
 809                ;; This test fails when run before installation.
 810                (delete-file "tests/test_activate.py")
 811
 812                ;; Fix broken defaults
 813                (substitute* "conda/base/context.py"
 814                  (("return sys.prefix")
 815                   (string-append "return \"" (assoc-ref outputs "out") "\""))
 816                  (("return (prefix_is_writable\\(self.root_prefix\\))" _ match)
 817                   (string-append "return False if self.root_prefix == self.conda_prefix else "
 818                                  match)))
 819
 820                ;; The util/setup-testing.py is used to build conda in
 821                ;; application form, rather than the default, library form.
 822                ;; With this, we are able to run commands like `conda --help`
 823                ;; directly on the command line
 824                (invoke "python" "utils/setup-testing.py" "build_py")))
 825            (replace 'install
 826              (lambda* (#:key inputs outputs #:allow-other-keys)
 827                (let* ((out (assoc-ref outputs "out"))
 828                       (target (string-append out "/lib/python"
 829                                              ((@@ (guix build python-build-system)
 830                                                   get-python-version)
 831                                               (assoc-ref inputs "python"))
 832                                              "/site-packages/")))
 833                  ;; The installer aborts if the target directory is not on
 834                  ;; PYTHONPATH.
 835                  (setenv "PYTHONPATH"
 836                          (string-append target ":" (getenv "PYTHONPATH")))
 837
 838                  ;; And it aborts if the directory doesn't exist.
 839                  (mkdir-p target)
 840                  (invoke "python" "utils/setup-testing.py" "install"
 841                          (string-append "--prefix=" out)))))
 842            ;; The "activate" and "deactivate" scripts don't need wrapping.
 843            ;; They also break when they are renamed.
 844            (add-after 'wrap 'undo-wrap
 845              (lambda* (#:key outputs #:allow-other-keys)
 846                (with-directory-excursion (string-append (assoc-ref outputs "out") "/bin/")
 847                  (delete-file "deactivate")
 848                  (rename-file ".deactivate-real" "deactivate")
 849                  (delete-file "activate")
 850                  (rename-file ".activate-real" "activate")
 851                  #t)))))))
 852     (description
 853      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 854 is the package manager used by Anaconda installations, but it may be used for
 855 other systems as well.  Conda makes environments first-class citizens, making
 856 it easy to create independent environments even for C libraries.  Conda is
 857 written entirely in Python.")))
 858
 859 (define-public gwl
 860   (package
 861     (name "gwl")
 862     (version "0.1.1")
 863     (source (origin
 864               (method url-fetch)
 865               (uri (string-append "https://www.guixwl.org/releases/gwl-"
 866                                   version ".tar.gz"))
 867               (sha256
 868                (base32
 869                 "06pm967mq1wyggx7l0nfapw5s0k5qc5r9lawk2v3db868br779a7"))))
 870     (build-system gnu-build-system)
 871     (native-inputs
 872      `(("autoconf" ,autoconf)
 873        ("automake" ,automake)
 874        ("pkg-config" ,pkg-config)))
 875     (inputs
 876      `(("guile" ,guile-2.2)))
 877     (propagated-inputs
 878      `(("guix" ,guix)
 879        ("guile-commonmark" ,guile-commonmark)))
 880     (home-page "https://www.guixwl.org")
 881     (synopsis "Workflow management extension for GNU Guix")
 882     (description "This project provides two subcommands to GNU Guix and
 883 introduces two record types that provide a workflow management extension built
 884 on top of GNU Guix.")
 885     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 886     ;; the web interface modules in gwl/ are licensed AGPL3+,
 887     ;; and the fonts included in this package are licensed OFL1.1.
 888     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 889
 890 (define-public gcab
 891   (package
 892     (name "gcab")
 893     (version "1.2")
 894     (source (origin
 895               (method url-fetch)
 896               (uri (string-append "mirror://gnome/sources/gcab/"
 897                                   version "/gcab-" version ".tar.xz"))
 898               (sha256
 899                (base32
 900                 "038h5kk41si2hc9d9169rrlvp8xgsxq27kri7hv2vr39gvz9cbas"))))
 901     (build-system meson-build-system)
 902     (native-inputs
 903      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
 904        ("intltool" ,intltool)
 905        ("pkg-config" ,pkg-config)
 906        ("vala" ,vala)))
 907     (inputs
 908      `(("glib" ,glib)
 909        ("zlib" ,zlib)))
 910     (arguments
 911      `(#:configure-flags
 912        ;; XXX This ‘documentation’ is for developers, and fails informatively:
 913        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
 914        (list "-Ddocs=false"
 915              "-Dintrospection=false")))
 916     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
 917     (synopsis "Microsoft Cabinet file manipulation library")
 918     (description
 919      "The libgcab library provides GObject functions to read, write, and modify
 920 Microsoft cabinet (.@dfn{CAB}) files.")
 921     (license (list license:gpl2+        ; tests/testsuite.at
 922                    license:lgpl2.1+)))) ; the rest
 923
 924 (define-public msitools
 925   (package
 926     (name "msitools")
 927     (version "0.99")
 928     (source (origin
 929               (method url-fetch)
 930               (uri (string-append "mirror://gnome/sources/msitools/"
 931                                   version "/msitools-" version ".tar.xz"))
 932               (sha256
 933                (base32
 934                 "0d9nidn5zc81bc30w119933rn2g87mrsqyqkndg20srkbsd96xfl"))))
 935     (build-system gnu-build-system)
 936     (native-inputs
 937      `(("bison" ,bison)
 938        ("pkg-config" ,pkg-config)))
 939     (inputs
 940      `(("gcab" ,gcab)
 941        ("glib" ,glib)
 942        ("libgsf" ,libgsf)
 943        ("libxml2" ,libxml2)
 944        ("uuid" ,util-linux)))
 945     (home-page "https://wiki.gnome.org/msitools")
 946     (synopsis "Windows Installer file manipulation tool")
 947     (description
 948      "msitools is a collection of command-line tools to inspect, extract, build,
 949 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
 950 for packaging and deployment of cross-compiled Windows applications.")
 951     (license license:lgpl2.1+)))
 952
 953 (define-public libostree
 954   (package
 955     (name "libostree")
 956     (version "2018.9.1")
 957     (source (origin
 958               (method url-fetch)
 959               (uri (string-append
 960                     "https://github.com/ostreedev/ostree/releases/download/v"
 961                     (version-major+minor version) "/libostree-" version ".tar.xz"))
 962               (sha256
 963                (base32
 964                 "01mygpkbl9sk2vr3hjbpih6qlg8lwx0q5lklm09f7jfwfpnwyqzj"))))
 965     (build-system gnu-build-system)
 966     (arguments
 967      '(#:phases
 968        (modify-phases %standard-phases
 969          (add-before 'check 'pre-check
 970            (lambda _
 971              ;; Don't try to use the non-existing '/var/tmp' as test
 972              ;; directory.
 973              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
 974              #t)))
 975        ;; XXX: fails with:
 976        ;;     tap-driver.sh: internal error getting exit status
 977        ;;     tap-driver.sh: fatal: I/O or internal error
 978        #:tests? #f))
 979     (native-inputs
 980      `(("attr" ,attr)                   ; for tests
 981        ("bison" ,bison)
 982        ("glib:bin" ,glib "bin")          ; for 'glib-mkenums'
 983        ("gobject-introspection" ,gobject-introspection)
 984        ("pkg-config" ,pkg-config)
 985        ("xsltproc" ,libxslt)))
 986     (inputs
 987      `(("avahi" ,avahi)
 988        ("docbook-xml" ,docbook-xml-4.2)
 989        ("docbook-xsl" ,docbook-xsl)
 990        ("e2fsprogs" ,e2fsprogs)
 991        ("fuse" ,fuse)
 992        ("glib" ,glib)
 993        ("gpgme" ,gpgme)
 994        ("libarchive" ,libarchive)
 995        ("libsoup" ,libsoup)
 996        ("nettle" ,nettle)               ; required by 'libarchive.la'
 997        ("util-linux" ,util-linux)))
 998     (home-page "https://ostree.readthedocs.io/en/latest/")
 999     (synopsis "Operating system and container binary deployment and upgrades")
1000     (description
1001      "@code{libostree} is both a shared library and suite of command line
1002 tools that combines a \"git-like\" model for committing and downloading
1003 bootable filesystem trees, along with a layer for deploying them and managing
1004 the bootloader configuration.")
1005     (license license:lgpl2.0+)))
1006
1007 (define-public flatpak
1008   (package
1009    (name "flatpak")
1010    (version "1.2.4")
1011    (source
1012     (origin
1013      (method url-fetch)
1014      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1015                          version "/flatpak-" version ".tar.xz"))
1016      (sha256
1017       (base32
1018        "1qf3ys84fzv11z6f6li59rxjdjbyrv7cyi9539k73r9i9pckjr8v"))))
1019
1020    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1021    ;; find the TLS backend in glib-networking.
1022    (build-system glib-or-gtk-build-system)
1023
1024    (arguments
1025     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
1026       #:configure-flags (list
1027                          "--enable-documentation=no" ;; FIXME
1028                          "--enable-system-helper=no"
1029                          "--localstatedir=/var"
1030                          (string-append "--with-system-bubblewrap="
1031                                         (assoc-ref %build-inputs "bubblewrap")
1032                                         "/bin/bwrap"))))
1033    (native-inputs `(("bison" ,bison)
1034                     ("gettext" ,gnu-gettext)
1035                     ("glib:bin" ,glib "bin") ; for glib-mkenums + gdbus-codegen
1036                     ("gobject-introspection" ,gobject-introspection)
1037                     ("libcap" ,libcap)
1038                     ("pkg-config" ,pkg-config)))
1039    (propagated-inputs `(("glib-networking" ,glib-networking)
1040                         ("gnupg" ,gnupg)
1041                         ("gsettings-desktop-schemas"
1042                          ,gsettings-desktop-schemas)))
1043    (inputs `(("appstream-glib" ,appstream-glib)
1044              ("bubblewrap" ,bubblewrap)
1045              ("dconf" ,dconf)
1046              ("gdk-pixbuf" ,gdk-pixbuf)
1047              ("gpgme" ,gpgme)
1048              ("json-glib" ,json-glib)
1049              ("libarchive" ,libarchive)
1050              ("libostree" ,libostree)
1051              ("libseccomp" ,libseccomp)
1052              ("libsoup" ,libsoup)
1053              ("libxau" ,libxau)
1054              ("libxml2" ,libxml2)
1055              ("nettle" ,nettle)
1056              ("util-linux" ,util-linux)))
1057    (home-page "https://flatpak.org")
1058    (synopsis "System for building, distributing, and running sandboxed desktop
1059 applications")
1060    (description "Flatpak is a system for building, distributing, and running
1061 sandboxed desktop applications on GNU/Linux.")
1062    (license license:lgpl2.1+)))