1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2018 Ludovic Courtès <ludo@gnu.org>
3 ;;; Copyright © 2012, 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
4 ;;; Copyright © 2013, 2017 Cyril Roelandt <tipecaml@gmail.com>
5 ;;; Copyright © 2014, 2016 David Thompson <davet@gnu.org>
6 ;;; Copyright © 2014, 2015, 2016, 2018 Mark H Weaver <mhw@netris.org>
7 ;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
8 ;;; Copyright © 2015, 2016 Sou Bunnbu <iyzsong@gmail.com>
9 ;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
10 ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
11 ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
12 ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
13 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
14 ;;; Copyright © 2016, 2017 Nils Gillmann <ng0@n0.is>
15 ;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
16 ;;; Copyright © 2016 David Craven <david@craven.ch>
17 ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
18 ;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
19 ;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org>
20 ;;; Copyright © 2016, 2017, 2018 Marius Bakke <mbakke@fastmail.com>
21 ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
22 ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
23 ;;; Copyright © 2017 Jelle Licht <jlicht@fsfe.org>
24 ;;; Copyright © 2017 Adriano Peluso <catonano@gmail.com>
25 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
26 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
27 ;;; Copyright © 2017, 2018 Alex Vong <alexvong1995@gmail.com>
28 ;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
29 ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
30 ;;; Copyright © 2017, 2018 Pierre Langlois <pierre.langlois@gmx.com>
31 ;;; Copyright © 2015, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
32 ;;; Copyright © 2017 Kristofer Buffington <kristoferbuffington@gmail.com>
33 ;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
34 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
36 ;;; This file is part of GNU Guix.
38 ;;; GNU Guix is free software; you can redistribute it and/or modify it
39 ;;; under the terms of the GNU General Public License as published by
40 ;;; the Free Software Foundation; either version 3 of the License, or (at
41 ;;; your option) any later version.
43 ;;; GNU Guix is distributed in the hope that it will be useful, but
44 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
45 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
46 ;;; GNU General Public License for more details.
48 ;;; You should have received a copy of the GNU General Public License
49 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
51 (define-module (gnu packages databases)
52 #:use-module (gnu packages)
53 #:use-module (gnu packages admin)
54 #:use-module (gnu packages algebra)
55 #:use-module (gnu packages autotools)
56 #:use-module (gnu packages avahi)
57 #:use-module (gnu packages base)
58 #:use-module (gnu packages bash)
59 #:use-module (gnu packages bison)
60 #:use-module (gnu packages boost)
61 #:use-module (gnu packages check)
62 #:use-module (gnu packages cmake)
63 #:use-module (gnu packages compression)
64 #:use-module (gnu packages crypto)
65 #:use-module (gnu packages curl)
66 #:use-module (gnu packages cyrus-sasl)
67 #:use-module (gnu packages emacs)
68 #:use-module (gnu packages gettext)
69 #:use-module (gnu packages glib)
70 #:use-module (gnu packages gnupg)
71 #:use-module (gnu packages guile)
72 #:use-module (gnu packages time)
73 #:use-module (gnu packages golang)
74 #:use-module (gnu packages jemalloc)
75 #:use-module (gnu packages language)
76 #:use-module (gnu packages libevent)
77 #:use-module (gnu packages linux)
78 #:use-module (gnu packages man)
79 #:use-module (gnu packages ncurses)
80 #:use-module (gnu packages parallel)
81 #:use-module (gnu packages pcre)
82 #:use-module (gnu packages perl)
83 #:use-module (gnu packages perl-check)
84 #:use-module (gnu packages pkg-config)
85 #:use-module (gnu packages popt)
86 #:use-module (gnu packages python)
87 #:use-module (gnu packages python-crypto)
88 #:use-module (gnu packages rdf)
89 #:use-module (gnu packages readline)
90 #:use-module (gnu packages ruby)
91 #:use-module (gnu packages serialization)
92 #:use-module (gnu packages statistics)
93 #:use-module (gnu packages tcl)
94 #:use-module (gnu packages terminals)
95 #:use-module (gnu packages textutils)
96 #:use-module (gnu packages tls)
97 #:use-module (gnu packages valgrind)
98 #:use-module (gnu packages web)
99 #:use-module (gnu packages xml)
100 #:use-module ((guix licenses) #:prefix license:)
101 #:use-module (guix packages)
102 #:use-module (guix download)
103 #:use-module (guix git-download)
104 #:use-module (guix build-system gnu)
105 #:use-module (guix build-system go)
106 #:use-module (guix build-system perl)
107 #:use-module (guix build-system python)
108 #:use-module (guix build-system ruby)
109 #:use-module (guix build-system cmake)
110 #:use-module (guix build-system r)
111 #:use-module (guix build-system scons)
112 #:use-module ((guix build utils) #:hide (which))
113 #:use-module (guix utils)
114 #:use-module (srfi srfi-1)
115 #:use-module (srfi srfi-26)
116 #:use-module (ice-9 match))
118 (define-public 4store
124 (uri (string-append "https://github.com/4store/4store/archive/v"
126 (file-name (string-append name "-" version ".tar.gz"))
128 (base32 "004fmcf1w75zhc1x3zc6kc97j4jqn2v5nhk6yb3z3cpfrhzi9j50"))
129 (patches (search-patches "4store-unset-preprocessor-directive.patch"
130 "4store-fix-buildsystem.patch"))))
131 (build-system gnu-build-system)
135 ("autoconf" ,autoconf)
136 ("automake" ,automake)
137 ("gettext" ,gettext-minimal)
139 ("pcre" ,pcre "bin") ;for 'pcre-config'
140 ("pkg-config" ,pkg-config)))
146 ("readline" ,readline)
148 ("cyrus-sasl" ,cyrus-sasl)
150 ("util-linux" ,util-linux)))
153 (modify-phases %standard-phases
154 (add-after 'unpack 'generate-configure
156 (invoke "sh" "autogen.sh"))))))
157 ;; http://www.4store.org has been down for a while now.
158 (home-page "https://github.com/4store/4store")
159 (synopsis "Clustered RDF storage and query engine")
160 (description "4store is a RDF/SPARQL store written in C, supporting
161 either single machines or networked clusters.")
162 (license license:gpl3+)))
170 (uri (string-append "mirror://gnu/gdbm/gdbm-"
174 "1kimnv12bzjjhaqk4c8w2j6chdj9c6bg21lchaf7abcyfss2r0mq"))))
175 (arguments `(#:configure-flags '("--enable-libgdbm-compat")))
176 (build-system gnu-build-system)
177 (home-page "http://www.gnu.org.ua/software/gdbm")
179 "Hash library of database functions compatible with traditional dbm")
181 "GDBM is a library for manipulating hashed databases. It is used to
182 store key/value pairs in a file in a manner similar to the Unix dbm library
183 and provides interfaces to the traditional file format.")
184 (license license:gpl3+)))
186 (define-public go-gopkg.in-mgo.v2
188 (name "go-gopkg.in-mgo.v2")
189 (version "2016.08.01")
193 (url "https://github.com/go-mgo/mgo")
194 (commit (string-append "r" version))))
195 (file-name (git-file-name name version))
198 "0rwbi1z63w43b0z9srm8m7iz1fdwx7bq7n2mz862d6liiaqa59jd"))))
199 (build-system go-build-system)
201 `(#:import-path "gopkg.in/mgo.v2"
202 ;; TODO: The tests fail as MongoDB fails to start
203 ;; Error parsing command line: unrecognised option '--chunkSize'
206 (modify-phases %standard-phases
207 (delete 'reset-gzip-timestamps)
208 (add-before 'check 'start-mongodb
209 (lambda* (#:key tests? #:allow-other-keys)
211 (with-directory-excursion "src/gopkg.in/mgo.v2"
212 (invoke "make" "startdb")))
214 (add-after 'check 'stop'mongodb
215 (lambda* (#:key tests? #:allow-other-keys)
217 (with-directory-excursion "src/gopkg.in/mgo.v2"
218 (invoke "make" "stopdb")))
221 `(("go-gopkg.in-check.v1" ,go-gopkg.in-check.v1)
223 ("daemontools" ,daemontools)))
224 (synopsis "@code{mgo} offers a rich MongoDB driver for Go.")
226 "@code{mgo} (pronounced as mango) is a MongoDB driver for the Go language.
227 It implements a rich selection of features under a simple API following
228 standard Go idioms.")
229 (home-page "http://labix.org/mgo")
230 (license license:bsd-2)))
238 (uri (string-append "http://download.oracle.com/berkeley-db/db-"
242 "1yx8wzhch5wwh016nh0kfxvknjkafv6ybkqh6nh7lxx50jqf5id9"))))
243 (build-system gnu-build-system)
244 (outputs '("out" ; programs, libraries, headers
245 "doc")) ; 94 MiB of HTML docs
247 '(#:tests? #f ; no check target available
248 #:disallowed-references ("doc")
250 (modify-phases %standard-phases
252 (lambda* (#:key outputs #:allow-other-keys)
253 (let ((out (assoc-ref outputs "out"))
254 (doc (assoc-ref outputs "doc")))
255 ;; '--docdir' is not honored, so we need to patch.
256 (substitute* "dist/Makefile.in"
257 (("docdir[[:blank:]]*=.*")
258 (string-append "docdir = " doc "/share/doc/bdb")))
260 (invoke "./dist/configure"
261 (string-append "--prefix=" out)
262 (string-append "CONFIG_SHELL=" (which "bash"))
263 (string-append "SHELL=" (which "bash"))
265 ;; Remove 7 MiB of .a files.
268 ;; The compatibility mode is needed by some packages,
272 ;; The following flag is needed so that the inclusion
273 ;; of db_cxx.h into C++ files works; it leads to
274 ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h.
275 "--enable-cxx")))))))
276 (synopsis "Berkeley database")
278 "Berkeley DB is an embeddable database allowing developers the choice of
279 SQL, Key/Value, XML/XQuery or Java Object storage for their data model.")
280 ;; Starting with version 6, BDB is distributed under AGPL3. Many individual
281 ;; files are covered by the 3-clause BSD license.
282 (license (list license:agpl3+ license:bsd-3))
284 "http://www.oracle.com/us/products/database/berkeley-db/overview/index.html")))
286 (define-public bdb-5.3
287 (package (inherit bdb)
290 (license (license:non-copyleft "file://LICENSE"
291 "See LICENSE in the distribution."))
294 (uri (string-append "http://download.oracle.com/berkeley-db/db-"
298 "0a1n5hbl7027fbz5lm0vp0zzfp1hmxnz14wx3zl9563h83br5ag0"))))
300 `(#:tests? #f ; no check target available
301 #:disallowed-references ("doc")
303 (modify-phases %standard-phases
305 (lambda* (#:key outputs #:allow-other-keys)
306 (let ((out (assoc-ref outputs "out"))
307 (doc (assoc-ref outputs "doc")))
308 ;; '--docdir' is not honored, so we need to patch.
309 (substitute* "dist/Makefile.in"
310 (("docdir[[:blank:]]*=.*")
311 (string-append "docdir = " doc "/share/doc/bdb")))
313 (invoke "./dist/configure"
314 (string-append "--prefix=" out)
315 (string-append "CONFIG_SHELL=" (which "bash"))
316 (string-append "SHELL=" (which "bash"))
318 ;; Bdb doesn't recognize aarch64 as an architecture.
319 ,@(if (string=? "aarch64-linux" (%current-system))
320 '("--build=aarch64-unknown-linux-gnu")
323 ;; Remove 7 MiB of .a files.
326 ;; The compatibility mode is needed by some packages,
330 ;; The following flag is needed so that the inclusion
331 ;; of db_cxx.h into C++ files works; it leads to
332 ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h.
333 "--enable-cxx")))))))))
335 (define-public es-dump-restore
337 (name "es-dump-restore")
342 (uri (rubygems-uri "es_dump_restore" version))
345 "020yk7f1hw48clmf5501z3xv9shsdchyymcv0y2cci2c1xvr1mim"))))
346 (build-system ruby-build-system)
348 '(#:tests? #f)) ;; No testsuite.
350 `(("ruby-httpclient" ,ruby-httpclient)
351 ("ruby-multi-json" ,ruby-multi-json)
352 ("ruby-progress_bar" ,ruby-progress_bar)
353 ("ruby-rubyzip" ,ruby-rubyzip)
354 ("ruby-thor" ,ruby-thor)))
355 (synopsis "Utility for dumping and restoring ElasticSearch indexes")
357 "This package provides a utility for dumping the contents of an
358 ElasticSearch index to a compressed file and restoring the dumpfile back to an
359 ElasticSearch server")
360 (home-page "https://github.com/patientslikeme/es_dump_restore")
361 (license license:expat)))
363 (define-public leveldb
369 (uri (string-append "https://github.com/google/leveldb"
370 "/archive/v" version ".tar.gz"))
371 (file-name (string-append name "-" version ".tar.gz"))
374 "0r36bcrj6b2afsp4aw1gjai3jbs1c7734pxpc1jz7hh9nasyiazm"))))
375 (build-system gnu-build-system)
377 '(#:make-flags (list "CC=gcc")
379 (modify-phases %standard-phases
382 ;; There is no install target, so we do it here.
383 (lambda* (#:key outputs #:allow-other-keys)
384 (let* ((out (assoc-ref outputs "out"))
385 (lib (string-append out "/lib"))
386 (include (string-append out "/include")))
387 (for-each (lambda (file)
388 (install-file file lib))
389 (find-files "out-shared" "^libleveldb\\.so.*$"))
390 (copy-recursively "include" include)
393 `(("snappy" ,snappy)))
394 (home-page "http://leveldb.org/")
395 (synopsis "Fast key-value storage library")
397 "LevelDB is a fast key-value storage library that provides an ordered
398 mapping from string keys to string values.")
399 (license license:bsd-3)))
401 (define-public memcached
409 "https://memcached.org/files/memcached-" version ".tar.gz"))
412 "0jqw3z0408yx0lzc6ykn4d29n02dk31kqnmq9b3ldmcnpl6hck29"))))
413 (build-system gnu-build-system)
415 `(("libevent" ,libevent)
416 ("cyrus-sasl" ,cyrus-sasl)))
417 (home-page "https://memcached.org/")
418 (synopsis "In-memory caching service")
419 (description "Memcached is an in-memory key-value store. It has a small
420 and generic API, and was originally intended for use with dynamic web
422 (license license:bsd-3)))
424 (define-public mongodb
430 (uri (string-append "https://github.com/mongodb/mongo/archive/r"
432 (file-name (string-append name "-" version ".tar.gz"))
434 (base32 "0676lvkljj7a5hdhv78dbykqnqrj9lbn9799mi84b8vbnzsq961r"))
435 (modules '((guix build utils)))
438 (for-each (lambda (dir)
439 (delete-file-recursively
440 (string-append "src/third_party/" dir)))
441 '("pcre-8.41" "scons-2.5.0" "snappy-1.1.3"
442 "valgrind-3.11.0" "wiredtiger"
443 "yaml-cpp-0.5.3" "zlib-1.2.8"))
447 (search-patch "mongodb-support-unknown-linux-distributions.patch")))))
448 (build-system scons-build-system)
450 `(("openssl" ,openssl)
452 ,@(match (%current-system)
453 ((or "x86_64-linux" "aarch64-linux" "mips64el-linux")
454 `(("wiredtiger" ,wiredtiger)))
456 ("yaml-cpp" ,yaml-cpp)
460 `(("valgrind" ,valgrind)
462 ("python" ,python2-minimal)
463 ("python2-pymongo" ,python2-pymongo)
464 ("python2-pyyaml" ,python2-pyyaml)
467 `(#:scons ,scons-python2
469 (let ((common-options
470 `(;; "--use-system-tcmalloc" TODO: Missing gperftools
472 ;; wiredtiger is 64-bit only
473 ,,(if (any (cute string-prefix? <> (or (%current-target-system)
475 '("i686-linux" "armhf-linux"))
477 ``"--use-system-wiredtiger")
479 ;; build/opt/mongo/db/fts/unicode/string.o failed: Error 1
480 ;; --use-system-boost
481 "--use-system-snappy"
483 "--use-system-valgrind"
484 ;; "--use-system-stemmer" TODO: Missing relevant package
486 "--disable-warnings-as-errors"
487 ,(format #f "--jobs=~a" (parallel-job-count))
489 (modify-phases %standard-phases
490 (add-after 'unpack 'scons-propagate-environment
492 ;; Modify the SConstruct file to arrange for
493 ;; environment variables to be propagated.
494 (substitute* "SConstruct"
495 (("^env = Environment\\(")
496 "env = Environment(ENV=os.environ, "))
498 (add-after 'unpack 'create-version-file
500 (call-with-output-file "version.json"
502 (display ,(simple-format #f "{
508 (apply invoke `("scons"
510 "mongod" "mongo" "mongos"))))
512 (lambda* (#:key tests? inputs #:allow-other-keys)
514 (string-append (assoc-ref inputs "tzdata")
517 ;; Note that with the tests, especially the unittests, the
518 ;; build can take up to ~45GB of space, as many tests are
519 ;; individual executable files, with some being hundreds of
520 ;; megabytes in size.
521 (apply invoke `("scons" ,@common-options "dbtest" "unittests"))
522 (substitute* "build/unittests.txt"
523 ;; TODO: Don't run the async_stream_test, as it hangs
524 (("^build\\/opt\\/mongo\\/executor\\/async\\_stream\\_test\n$")
526 ;; TODO: This test fails
527 ;; Expected 0UL != disks.size() (0 != 0) @src/mongo/util/procparser_test.cpp:476
528 (("^build\\/opt\\/mongo\\/util\\/procparser\\_test\n$")
530 (invoke "python" "buildscripts/resmoke.py"
531 "--suites=dbtest,unittests"
532 (format #f "--jobs=~a" (parallel-job-count))))
535 (lambda* (#:key outputs #:allow-other-keys)
536 (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
537 (install-file "mongod" bin)
538 (install-file "mongos" bin)
539 (install-file "mongo" bin))
541 (home-page "https://www.mongodb.org/")
542 (synopsis "High performance and high availability document database")
544 "Mongo is a high-performance, high availability, schema-free
545 document-oriented database. A key goal of MongoDB is to bridge the gap
546 between key/value stores (which are fast and highly scalable) and traditional
547 RDBMS systems (which are deep in functionality).")
548 (license (list license:agpl3
549 ;; Some parts are licensed under the Apache License
552 ;; XXX When updating, check whether boost-for-mysql is still needed.
553 ;; It might suffice to patch ‘cmake/boost.cmake’ as done in the past.
560 (uri (list (string-append
561 "https://dev.mysql.com/get/Downloads/MySQL-"
562 (version-major+minor version) "/"
563 name "-" version ".tar.gz")
565 "https://downloads.mysql.com/archives/get/file/"
566 name "-" version ".tar.gz")))
569 "0rbc3xsc11lq2dm0ip6gxa16c06hi74scb97x5cw7yhbabaz4c07"))))
570 (build-system cmake-build-system)
573 '("-DBUILD_CONFIG=mysql_release"
576 "-DDEFAULT_CHARSET=utf8"
577 "-DDEFAULT_COLLATION=utf8_general_ci"
578 "-DMYSQL_DATADIR=/var/lib/mysql"
579 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
580 "-DINSTALL_INFODIR=share/mysql/docs"
581 "-DINSTALL_MANDIR=share/man"
582 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
583 "-DINSTALL_SCRIPTDIR=bin"
584 "-DINSTALL_INCLUDEDIR=include/mysql"
585 "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
586 "-DINSTALL_SUPPORTFILESDIR=share/mysql"
587 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
588 "-DINSTALL_DOCDIR=share/mysql/docs"
589 "-DINSTALL_SHAREDIR=share/mysql"
590 ;; Get rid of test data.
591 "-DINSTALL_MYSQLTESTDIR="
592 "-DINSTALL_SQLBENCHDIR=")
593 #:phases (modify-phases %standard-phases
595 'install 'remove-extra-binaries
596 (lambda* (#:key outputs #:allow-other-keys)
597 (let ((out (assoc-ref outputs "out")))
598 ;; Remove the 3 *_embedded files, which weigh in at
600 (for-each delete-file
601 (find-files (string-append out "/bin")
608 `(("boost" ,boost-for-mysql)
613 (home-page "https://www.mysql.com/")
614 (synopsis "Fast, easy to use, and popular database")
616 "MySQL is a fast, reliable, and easy to use relational database
617 management system that supports the standardized Structured Query
619 (license license:gpl2)))
621 (define-public mariadb
627 (uri (string-append "https://downloads.mariadb.org/f/"
628 name "-" version "/source/"
629 name "-" version ".tar.gz"))
632 "0ijdmdn9mcciwv361zfmja6b1h6qpbdqgrnnq6kkdapplyq1dmcc"))
633 (patches (search-patches "mariadb-client-test-32bit.patch"))
634 (modules '((guix build utils)))
637 ;; Delete bundled snappy and xz.
638 (delete-file-recursively "storage/tokudb/PerconaFT/third_party")
639 (substitute* "storage/tokudb/PerconaFT/CMakeLists.txt"
640 ;; This file checks that the bundled sources are present and
641 ;; declares build procedures for them.
642 (("^include\\(TokuThirdParty\\)") ""))
643 (substitute* "storage/tokudb/PerconaFT/ft/CMakeLists.txt"
644 ;; Don't attempt to use the procedures we just removed.
645 ((" build_lzma build_snappy") ""))
647 ;; Preserve CMakeLists.txt for these.
648 (for-each (lambda (file)
649 (unless (string-suffix? "CMakeLists.txt" file)
651 (append (find-files "extra/yassl")
652 (find-files "pcre") (find-files "zlib")))
654 (build-system cmake-build-system)
657 '("-DBUILD_CONFIG=mysql_release"
658 ;; Linking with libarchive fails, like this:
660 ;; ld: /gnu/store/...-libarchive-3.2.2/lib/libarchive.a(archive_entry.o):
661 ;; relocation R_X86_64_32 against `.bss' can not be used when
662 ;; making a shared object; recompile with -fPIC
664 ;; For now, disable the features that that use libarchive (xtrabackup).
665 "-DWITH_LIBARCHIVE=OFF"
667 ;; Ensure the system libraries are used.
668 "-DWITH_JEMALLOC=yes"
673 "-DDEFAULT_CHARSET=utf8"
674 "-DDEFAULT_COLLATION=utf8_general_ci"
675 "-DMYSQL_DATADIR=/var/lib/mysql"
676 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
677 "-DINSTALL_INFODIR=share/mysql/docs"
678 "-DINSTALL_MANDIR=share/man"
679 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
680 "-DINSTALL_SCRIPTDIR=bin"
681 "-DINSTALL_INCLUDEDIR=include/mysql"
682 "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
683 "-DINSTALL_SUPPORTFILESDIR=share/mysql/support-files"
684 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
685 "-DINSTALL_DOCDIR=share/mysql/docs"
686 "-DINSTALL_SHAREDIR=share")
688 (modify-phases %standard-phases
689 (add-after 'unpack 'fix-pcre-detection
691 ;; The bundled PCRE in MariaDB has a patch that was upstreamed
692 ;; in version 8.34. Unfortunately the upstream patch behaves
693 ;; slightly differently and the build system fails to detect it.
694 ;; See <https://bugs.exim.org/show_bug.cgi?id=2173>.
695 ;; XXX: Consider patching PCRE instead.
696 (substitute* "cmake/pcre.cmake"
697 ((" OR NOT PCRE_STACK_SIZE_OK") ""))
699 (add-after 'unpack 'adjust-tests
701 (let ((disabled-tests
702 '(;; These fail because root@hostname == root@localhost in
703 ;; the build environment, causing a user count mismatch.
704 ;; See <https://jira.mariadb.org/browse/MDEV-7761>.
706 "main.explain_non_select"
707 "main.stat_tables_innodb"
708 "roles.acl_statistics"
710 ;; FIXME: This test fails on i686:
711 ;; -myisampack: Can't create/write to file (Errcode: 17 "File exists")
712 ;; +myisampack: Can't create/write to file (Errcode: 17 "File exists)
713 ;; When running "myisampack --join=foo/t3 foo/t1 foo/t2"
714 ;; (all three tables must exist and be identical)
715 ;; in a loop it produces the same error around 1/240 times.
716 ;; montywi on #maria suggested removing the real_end check in
717 ;; "strings/my_vsnprintf.c" on line 503, yet it still does not
718 ;; reach the ending quote occasionally. Disable it for now.
720 ;; FIXME: This test fails on armhf-linux:
721 "mroonga/storage.index_read_multiple_double"))
723 ;; This file contains a list of known-flaky tests for this
724 ;; release. Append our own items.
725 (unstable-tests (open-file "mysql-test/unstable-tests" "a")))
726 (for-each (lambda (test)
727 (format unstable-tests "~a : ~a\n"
728 test "Disabled in Guix"))
730 (close-port unstable-tests)
732 (substitute* "mysql-test/mysql-test-run.pl"
733 (("/bin/ls") (which "ls"))
734 (("/bin/sh") (which "sh")))
736 (add-before 'configure 'disable-plugins
738 (let ((disable-plugin (lambda (name)
739 (call-with-output-file
740 (string-append "plugin/" name
743 (format port "\n")))))
744 (disabled-plugins '(;; XXX: Causes a test failure.
746 (for-each disable-plugin disabled-plugins)
749 (lambda* (#:key (tests? #t) #:allow-other-keys)
751 (with-directory-excursion "mysql-test"
752 (invoke "./mtr" "--verbose"
754 "--testcase-timeout=40"
755 "--suite-timeout=600"
756 "--parallel" (number->string (parallel-job-count))
757 "--skip-test-list=unstable-tests"))
758 (format #t "test suite not run~%"))
761 'install 'post-install
762 (lambda* (#:key outputs #:allow-other-keys)
763 (let* ((out (assoc-ref outputs "out"))
764 (test (assoc-ref outputs "test")))
765 (substitute* (string-append out "/bin/mysql_install_db")
767 (string-append "basedir=\"" out "\"")))
768 ;; Remove unneeded files for testing.
769 (with-directory-excursion out
770 (for-each delete-file-recursively
771 '("data" "mysql-test" "sql-bench"
772 "share/man/man1/mysql-test-run.pl.1"))
773 ;; Delete huge and unnecessary executables.
774 (for-each delete-file (find-files "bin" "(test|embedded)"))
775 ;; And static libraries.
776 (for-each delete-file (find-files "lib" "\\.a$")))
782 `(("jemalloc" ,jemalloc)
791 ;; mariadb.pc says -lssl -lcrypto, so propagate it.
792 `(("openssl" ,openssl)))
793 ;; The test suite is very resource intensive and can take more than three
794 ;; hours on a x86_64 system. Give slow and busy machines some leeway.
795 (properties '((timeout . 64800))) ;18 hours
796 (home-page "https://mariadb.org/")
797 (synopsis "SQL database server")
799 "MariaDB is a multi-user and multi-threaded SQL database server, designed
800 as a drop-in replacement of MySQL.")
801 (license license:gpl2)))
803 ;; Don't forget to update the other postgresql packages when upgrading this one.
804 (define-public postgresql
810 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
811 version "/postgresql-" version ".tar.bz2"))
814 "0jv26y3f10svrjxzsgqxg956c86b664azyk2wppzpa5x11pjga38"))))
815 (build-system gnu-build-system)
817 `(#:configure-flags '("--with-uuid=e2fs")
819 (modify-phases %standard-phases
820 (add-before 'configure 'patch-/bin/sh
822 ;; Refer to the actual shell.
823 (substitute* '("src/bin/pg_ctl/pg_ctl.c"
824 "src/bin/psql/command.c")
825 (("/bin/sh") (which "sh")))
827 (add-after 'build 'build-contrib
829 (invoke "make" "-C" "contrib")))
830 (add-after 'install 'install-contrib
832 (invoke "make" "-C" "contrib" "install"))))))
834 `(("readline" ,readline)
835 ("libuuid" ,util-linux)
837 (home-page "https://www.postgresql.org/")
838 (synopsis "Powerful object-relational database system")
840 "PostgreSQL is a powerful object-relational database system. It is fully
841 ACID compliant, has full support for foreign keys, joins, views, triggers, and
842 stored procedures (in multiple languages). It includes most SQL:2008 data
843 types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and
844 TIMESTAMP. It also supports storage of binary large objects, including
845 pictures, sounds, or video.")
846 (license (license:x11-style "file://COPYRIGHT"))))
848 (define-public postgresql-9.6
855 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
856 version "/postgresql-" version ".tar.bz2"))
859 "0c55akrkzqd6p6a8hr0338wk246hl76r9j16p4zn3s51d7f0l99q"))))))
861 (define-public python-pymysql
863 (name "python-pymysql")
868 (uri (pypi-uri "PyMySQL" version))
871 "0gvi63f1zq1bbd30x28kqyx351hal1yc323ckp0mihainb5n1iwy"))))
872 (build-system python-build-system)
874 `(("python-unittest2" ,python-unittest2)))
876 `(("python-cryptography" ,python-cryptography)))
878 `(#:tests? #f)) ; tests expect a running MySQL
879 (home-page "https://github.com/PyMySQL/PyMySQL/")
880 (synopsis "Pure-Python MySQL driver")
882 "PyMySQL is a pure-Python MySQL client library, based on PEP 249.
883 Most public APIs are compatible with @command{mysqlclient} and MySQLdb.")
884 (license license:expat)))
886 (define-public python2-pymysql
887 (package-with-python2 python-pymysql))
896 (uri (string-append "http://fallabs.com/" name "/"
897 name "-" version ".tar.gz"))
900 "0gmpvhn02pkq280ffmn4da1g4mdr1xxz7l80b7y4n7km1mrzwrml"))))
901 (build-system gnu-build-system)
903 `( #:configure-flags (list (string-append "LDFLAGS=-Wl,-rpath="
904 (assoc-ref %outputs "out")
906 (home-page "http://fallabs.com/qdbm")
907 (synopsis "Key-value database")
908 (description "QDBM is a library of routines for managing a
909 database. The database is a simple data file containing key-value
910 pairs. Every key and value is serial bytes with variable length.
911 Binary data as well as character strings can be used as a key or a
912 value. There is no concept of data tables or data types. Records are
913 organized in a hash table or B+ tree.")
914 (license license:lgpl2.1+)))
916 (define-public recutils
922 (uri (string-append "mirror://gnu/recutils/recutils-"
926 "0cdwa4094x3yx7vn98xykvnlp9rngvd58d19vs3vh5hrvggccg93"))
927 (modules '((guix build utils)))
930 ;; Adjust the bundled gnulib to work with glibc 2.28. See e.g.
931 ;; "m4-gnulib-libio.patch". This is a phase rather than patch
932 ;; or snippet to work around <https://bugs.gnu.org/32347>.
933 (substitute* (find-files "lib" "\\.c$")
934 (("#if defined _IO_ftrylockfile")
935 "#if defined _IO_EOF_SEEN"))
936 (substitute* "lib/stdio-impl.h"
937 (("^/\\* BSD stdio derived implementations")
938 (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n"
939 "# define _IO_IN_BACKUP 0x100\n"
941 "/* BSD stdio derived implementations")))
943 (build-system gnu-build-system)
945 ;; Running tests in parallel leads to test failures and crashes in
947 (arguments '(#:parallel-tests? #f
949 (list (string-append "--with-bash-headers="
950 (assoc-ref %build-inputs "bash:include")
953 #:phases (modify-phases %standard-phases
954 (add-before 'build 'set-bash4.4-header-location
956 (substitute* "bash/Makefile.in"
957 ;; Adjust the header search path for Bash
958 ;; 4.4 in accordance with 'bash.pc'.
959 (("AM_CPPFLAGS = (.*)$" _ rest)
960 (string-append "AM_CPPFLAGS = "
961 "-I$(BASH_HEADERS)/include "
964 ;; Install to PREFIX/lib/bash to match Bash
965 ;; 4.4's search path.
967 "libdir = @libdir@/bash\n"))
970 (native-inputs `(("emacs" ,emacs-minimal)
972 ("bash:include" ,bash "include")
973 ("libuuid" ,util-linux)))
975 ;; TODO: Add more optional inputs.
976 (inputs `(("curl" ,curl)
977 ("libgcrypt" ,libgcrypt)
979 (synopsis "Manipulate plain text files as databases")
981 "GNU Recutils is a set of tools and libraries for creating and
982 manipulating text-based, human-editable databases. Despite being text-based,
983 databases created with Recutils carry all of the expected features such as
984 unique fields, primary keys, time stamps and more. Many different field
985 types are supported, as is encryption.")
986 (license license:gpl3+)
987 (home-page "https://www.gnu.org/software/recutils/")))
989 (define-public rocksdb
996 (url "https://github.com/facebook/rocksdb")
997 (commit (string-append "v" version))))
998 (file-name (git-file-name name version))
1001 "0q26frbj9pykarcfa0yxgwncxlvsqhjkby0jrbfs1a8srja688r4"))
1002 (modules '((guix build utils)))
1005 ;; TODO: unbundle gtest.
1006 (delete-file "build_tools/gnu_parallel")
1007 (substitute* "Makefile"
1008 (("build_tools/gnu_parallel") "parallel"))
1010 (build-system gnu-build-system)
1012 `(#:make-flags (list "CC=gcc" "V=1"
1013 ;; Ceph requires that RTTI is enabled.
1015 (string-append "INSTALL_PATH="
1016 (assoc-ref %outputs "out"))
1018 ;; Running the full test suite takes hours and require
1019 ;; a lot of disk space. Instead we only run a subset
1020 ;; (see .travis.yml and Makefile).
1021 "ROCKSDBTESTS_END=db_tailing_iter_test")
1022 #:test-target "check_some"
1023 ;; Many tests fail on 32-bit platforms. There are multiple reports about
1024 ;; this upstream, but it's not going to be supported any time soon.
1025 #:tests? (let ((system ,(or (%current-target-system)
1026 (%current-system))))
1027 (or (string-prefix? "x86_64-linux" system)
1028 (string-prefix? "aarch64-linux" system)))
1030 (modify-phases %standard-phases
1031 (add-after 'unpack 'patch-Makefile
1033 (substitute* "Makefile"
1034 ;; Don't depend on the static library when installing.
1035 (("install: install-static")
1036 "install: install-shared")
1037 (("#!/bin/sh") (string-append "#!" (which "sh"))))
1040 ;; The default target is only needed for tests and built on demand.
1042 (add-before 'check 'disable-optimizations
1044 ;; Prevent the build from passing '-march=native' to the compiler.
1045 (setenv "PORTABLE" "1")
1047 (add-before 'check 'disable-failing-tests
1049 (substitute* "Makefile"
1050 ;; These tests reliably fail due to "Too many open files".
1051 (("^[[:blank:]]+env_test[[:blank:]]+\\\\") "\\")
1052 (("^[[:blank:]]+persistent_cache_test[[:blank:]]+\\\\") "\\"))
1054 (add-after 'check 'build
1055 ;; The default build target is a debug build for tests. The
1056 ;; install target depends on the "shared_lib" release target
1057 ;; so we build it here for clarity.
1058 (lambda* (#:key (make-flags '()) parallel-build? #:allow-other-keys)
1059 (apply invoke "make" "shared_lib"
1060 `(,@(if parallel-build?
1061 `("-j" ,(number->string (parallel-job-count)))
1065 `(("parallel" ,parallel)
1068 ("python" ,python-2)
1073 ("jemalloc" ,jemalloc)
1077 (home-page "http://rocksdb.org/")
1078 (synopsis "Persistent key-value store for fast storage")
1080 "RocksDB is a library that forms the core building block for a fast
1081 key-value server, especially suited for storing data on flash drives. It
1082 has a @dfn{Log-Structured-Merge-Database} (LSM) design with flexible tradeoffs
1083 between @dfn{Write-Amplification-Factor} (WAF), @dfn{Read-Amplification-Factor}
1084 (RAF) and @dfn{Space-Amplification-Factor} (SAF). It has multi-threaded
1085 compactions, making it specially suitable for storing multiple terabytes of
1086 data in a single database. RocksDB is partially based on @code{LevelDB}.")
1087 ;; RocksDB is dual licensed under GPL2 and ASL 2.0. Some header
1088 ;; files carry the 3-clause BSD license.
1089 (license (list license:gpl2 license:asl2.0 license:bsd-3))))
1091 (define-public sparql-query
1093 (name "sparql-query")
1097 (uri (string-append "https://github.com/tialaramex/"
1098 name "/archive/" version ".tar.gz"))
1100 (base32 "0yq3k20472rv8npcc420q9ab6idy584g5y0q501d360k5q0ggr8w"))
1101 (file-name (string-append name "-" version ".tar.gz"))))
1102 (build-system gnu-build-system)
1104 `(("readline" ,readline)
1105 ("ncurses" ,ncurses)
1107 ("libxml2" ,libxml2)
1110 `(("pkg-config" ,pkg-config)))
1112 `(#:make-flags '("CC=gcc")
1114 (modify-phases %standard-phases
1116 ;; The Makefile uses git to obtain versioning information. This phase
1117 ;; substitutes the git invocation with the package version.
1118 (add-after 'unpack 'remove-git-dependency
1120 (substitute* "Makefile"
1122 (string-append "gitrev = \"v" ,version "\"")))
1124 ;; The install phase of the Makefile assumes $PREFIX/usr/local/bin.
1125 ;; This replacement does the same thing, except for using $PREFIX/bin
1128 (lambda* (#:key outputs #:allow-other-keys)
1129 (let* ((out (assoc-ref outputs "out"))
1130 (bin (string-append out "/bin")))
1131 (install-file "sparql-query" bin)
1132 (symlink (string-append bin "/sparql-query")
1133 (string-append bin "/sparql-update")))
1136 (lambda* (#:key make-flags #:allow-other-keys)
1137 (apply invoke "make" `(,@make-flags "scan-test"))
1138 (invoke "./scan-test"))))))
1139 (home-page "https://github.com/tialaramex/sparql-query/")
1140 (synopsis "Command-line tool for accessing SPARQL endpoints over HTTP")
1141 (description "Sparql-query is a command-line tool for accessing SPARQL
1142 endpoints over HTTP. It has been intentionally designed to 'feel' similar to
1143 tools for interrogating SQL databases. For example, you can enter a query over
1144 several lines, using a semi-colon at the end of a line to indicate the end of
1145 your query. It also supports readline so that you can more easily recall and
1146 edit previous queries, even across sessions. It can be used non-interactively,
1147 for example from a shell script.")
1148 ;; Some files (like scan-sparql.c) contain a GPLv3+ license header, while
1149 ;; others (like sparql-query.c) contain a GPLv2+ license header.
1150 (license (list license:gpl3+))))
1152 (define-public sqlcrush
1153 ;; Unfortunately, there is no proper upstream release and may never be.
1154 (let ((commit "b5f6868f189566a26eecc78d0f0659813c1aa98a")
1158 (version (git-version "0.1.5" revision commit))
1162 (url "https://github.com/coffeeandscripts/sqlcrush.git")
1164 (file-name (git-file-name name version))
1167 "0x3wy40r93p0jv3nbwj9a77wa4ff697d13r0wffmm7q9h3mzsww8"))))
1168 (build-system python-build-system)
1170 `(("python-cryptography" ,python-cryptography)
1171 ("python-psycopg2" ,python-psycopg2)
1172 ("python-pymysql" ,python-pymysql)
1173 ("python-sqlalchemy" ,python-sqlalchemy)))
1174 (home-page "https://github.com/coffeeandscripts/sqlcrush")
1175 (synopsis "Text console-based database viewer and editor")
1177 "SQLcrush lets you view and edit a database directly from the text
1178 console through an ncurses interface. You can explore each table's structure,
1179 browse and edit the contents, add and delete entries, all while tracking your
1181 (license license:gpl3+)))) ; no headers, see README.md
1183 (define-public sqlite
1186 (replacement sqlite-3.26.0)
1190 (uri (let ((numeric-version
1191 (match (string-split version #\.)
1192 ((first-digit other-digits ...)
1193 (string-append first-digit
1196 (map (cut string-pad <> 2 #\0)
1199 (string-append "https://sqlite.org/2018/sqlite-autoconf-"
1200 numeric-version ".tar.gz")))
1203 "0jmprv2vpggzhy7ma4ynmv1jzn3pfiwzkld0kkg6hvgvqs44xlfr"))))
1204 (build-system gnu-build-system)
1205 (inputs `(("readline" ,readline)))
1208 ;; Add -DSQLITE_SECURE_DELETE, -DSQLITE_ENABLE_UNLOCK_NOTIFY and
1209 ;; -DSQLITE_ENABLE_DBSTAT_VTAB to CFLAGS. GNU Icecat will refuse
1210 ;; to use the system SQLite unless these options are enabled.
1211 (list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
1212 "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
1213 "-DSQLITE_ENABLE_DBSTAT_VTAB"))))
1214 (home-page "https://www.sqlite.org/")
1215 (synopsis "The SQLite database management system")
1217 "SQLite is a software library that implements a self-contained, serverless,
1218 zero-configuration, transactional SQL database engine. SQLite is the most
1219 widely deployed SQL database engine in the world. The source code for SQLite
1220 is in the public domain.")
1221 (license license:public-domain)))
1223 (define-public sqlite-3.26.0
1224 (package (inherit sqlite)
1228 (uri (let ((numeric-version
1229 (match (string-split version #\.)
1230 ((first-digit other-digits ...)
1231 (string-append first-digit
1234 (map (cut string-pad <> 2 #\0)
1237 (string-append "https://sqlite.org/2018/sqlite-autoconf-"
1238 numeric-version ".tar.gz")))
1241 "0pdzszb4sp73hl36siiv3p300jvfvbcdxi2rrmkwgs6inwznmajx"))))))
1243 ;; This is used by Tracker.
1244 (define-public sqlite-with-fts5
1245 (package/inherit sqlite
1246 (name "sqlite-with-fts5")
1248 (substitute-keyword-arguments (package-arguments sqlite)
1249 ((#:configure-flags flags)
1250 `(cons "--enable-fts5" ,flags))))))
1252 ;; This is used by Qt.
1253 (define-public sqlite-with-column-metadata
1254 (package/inherit sqlite
1255 (name "sqlite-with-column-metadata")
1257 (substitute-keyword-arguments (package-arguments sqlite)
1258 ((#:configure-flags flags)
1259 `(list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
1260 "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
1261 "-DSQLITE_ENABLE_DBSTAT_VTAB "
1262 "-DSQLITE_ENABLE_COLUMN_METADATA")))))))
1270 (uri (string-append "https://www.samba.org/ftp/tdb/tdb-"
1274 "1ibcz466xwk1x6xvzlgzd5va4lyrjzm3rnjak29kkwk7cmhw4gva"))))
1275 (build-system gnu-build-system)
1278 (modify-phases %standard-phases
1280 (lambda* (#:key outputs #:allow-other-keys)
1281 (let ((out (assoc-ref outputs "out")))
1282 ;; The 'configure' script is a wrapper for Waf and
1283 ;; doesn't recognize things like '--enable-fast-install'.
1284 (invoke "./configure"
1285 (string-append "--prefix=" out))))))))
1287 `(;; TODO: Build the documentation.
1288 ;; ("docbook-xsl" ,docbook-xsl)
1289 ;; ("libxml2" ,libxml2)
1290 ;; ("libxslt" ,libxslt)
1291 ("python" ,python-2))) ;for the Waf build system
1292 (home-page "https://tdb.samba.org/")
1293 (synopsis "Trivial database")
1295 "TDB is a Trivial Database. In concept, it is very much like GDBM,
1296 and BSD's DB except that it allows multiple simultaneous writers and uses
1297 locking internally to keep writers from trampling on each other. TDB is also
1299 (license license:lgpl3+)))
1301 (define-public perl-dbi
1308 "mirror://cpan/authors/id/T/TI/TIMB/DBI-"
1312 "1hf2x29bnqf2x1v4bdhji802z7n2mbg7h1amv8gdkqyhrlrfa2am"))))
1313 (build-system perl-build-system)
1314 (synopsis "Database independent interface for Perl")
1315 (description "This package provides an database interface for Perl.")
1316 (home-page "https://metacpan.org/release/DBI")
1317 (license license:perl-license)))
1319 (define-public perl-dbix-class
1321 (name "perl-dbix-class")
1322 (version "0.082841")
1326 (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
1327 "DBIx-Class-" version ".tar.gz"))
1330 "1gf3hgv8f9rnr8bl4ljgsqk4aliphmvljhsk4282kvdc4mcgh1fp"))))
1331 (build-system perl-build-system)
1333 `(("perl-dbd-sqlite" ,perl-dbd-sqlite)
1334 ("perl-file-temp" ,perl-file-temp)
1335 ("perl-module-install" ,perl-module-install)
1336 ("perl-package-stash" ,perl-package-stash)
1337 ("perl-test-deep" ,perl-test-deep)
1338 ("perl-test-exception" ,perl-test-exception)
1339 ("perl-test-warn" ,perl-test-warn)))
1341 `(("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1342 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1343 ("perl-class-inspector" ,perl-class-inspector)
1344 ("perl-config-any" ,perl-config-any)
1345 ("perl-context-preserve" ,perl-context-preserve)
1346 ("perl-data-dumper-concise" ,perl-data-dumper-concise)
1347 ("perl-data-page" ,perl-data-page)
1348 ("perl-dbi" ,perl-dbi)
1349 ("perl-devel-globaldestruction" ,perl-devel-globaldestruction)
1350 ("perl-hash-merge" ,perl-hash-merge)
1351 ("perl-module-find" ,perl-module-find)
1352 ("perl-moo" ,perl-moo)
1353 ("perl-mro-compat" ,perl-mro-compat)
1354 ("perl-namespace-clean" ,perl-namespace-clean)
1355 ("perl-path-class" ,perl-path-class)
1356 ("perl-scalar-list-utils" ,perl-scalar-list-utils)
1357 ("perl-scope-guard" ,perl-scope-guard)
1358 ("perl-sql-abstract" ,perl-sql-abstract)
1359 ("perl-sub-name" ,perl-sub-name)
1360 ("perl-text-balanced" ,perl-text-balanced)
1361 ("perl-try-tiny" ,perl-try-tiny)))
1362 (home-page "https://metacpan.org/release/DBIx-Class")
1363 (synopsis "Extensible and flexible object <-> relational mapper")
1364 (description "An SQL to OO mapper with an object API inspired by
1365 Class::DBI (with a compatibility layer as a springboard for porting) and a
1366 resultset API that allows abstract encapsulation of database operations. It
1367 aims to make representing queries in your code as perl-ish as possible while
1368 still providing access to as many of the capabilities of the database as
1369 possible, including retrieving related records from multiple tables in a
1370 single query, \"JOIN\", \"LEFT JOIN\", \"COUNT\", \"DISTINCT\", \"GROUP BY\",
1371 \"ORDER BY\" and \"HAVING\" support.")
1372 (license license:perl-license)))
1374 (define-public perl-dbix-class-cursor-cached
1376 (name "perl-dbix-class-cursor-cached")
1377 (version "1.001004")
1381 (uri (string-append "mirror://cpan/authors/id/A/AR/ARCANEZ/"
1382 "DBIx-Class-Cursor-Cached-" version ".tar.gz"))
1385 "09b2jahn2x12qm4f7qm1jzsxbz7qn1czp6a3fnl5l2i3l4r5421p"))))
1386 (build-system perl-build-system)
1388 `(("perl-cache-cache" ,perl-cache-cache)
1389 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1390 ("perl-module-install" ,perl-module-install)))
1392 `(("perl-carp-clan" ,perl-carp-clan)
1393 ("perl-dbix-class" ,perl-dbix-class)))
1394 (home-page "https://metacpan.org/release/DBIx-Class-Cursor-Cached")
1395 (synopsis "Cursor with built-in caching support")
1396 (description "DBIx::Class::Cursor::Cached provides a cursor class with
1397 built-in caching support.")
1398 (license license:perl-license)))
1400 (define-public perl-dbix-class-introspectablem2m
1402 (name "perl-dbix-class-introspectablem2m")
1403 (version "0.001002")
1407 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1408 "DBIx-Class-IntrospectableM2M-" version ".tar.gz"))
1411 "1w47rh2241iy5x3a9bqsyd5kdp9sk43dksr99frzv4qn4jsazfn6"))))
1412 (build-system perl-build-system)
1414 `(("perl-module-install" ,perl-module-install)))
1416 `(("perl-dbix-class" ,perl-dbix-class)))
1417 (home-page "https://metacpan.org/release/DBIx-Class-IntrospectableM2M")
1418 (synopsis "Introspect many-to-many relationships")
1419 (description "Because the many-to-many relationships are not real
1420 relationships, they can not be introspected with DBIx::Class. Many-to-many
1421 relationships are actually just a collection of convenience methods installed
1422 to bridge two relationships. This DBIx::Class component can be used to store
1423 all relevant information about these non-relationships so they can later be
1424 introspected and examined.")
1425 (license license:perl-license)))
1427 (define-public perl-dbix-class-schema-loader
1429 (name "perl-dbix-class-schema-loader")
1434 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1435 "DBIx-Class-Schema-Loader-" version ".tar.gz"))
1438 "0r57fv71ypxafb85cpxph1hdqii7ipjwvc19yb6fpkvq2ggcssg8"))))
1439 (build-system perl-build-system)
1441 `(("perl-config-any" ,perl-config-any)
1442 ("perl-config-general" ,perl-config-general)
1443 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1444 ("perl-dbix-class-introspectablem2m" ,perl-dbix-class-introspectablem2m)
1445 ("perl-module-install" ,perl-module-install)
1446 ("perl-moose" ,perl-moose)
1447 ("perl-moosex-markasmethods" ,perl-moosex-markasmethods)
1448 ("perl-moosex-nonmoose" ,perl-moosex-nonmoose)
1449 ("perl-namespace-autoclean" ,perl-namespace-autoclean)
1450 ("perl-test-deep" ,perl-test-deep)
1451 ("perl-test-differences" ,perl-test-differences)
1452 ("perl-test-exception" ,perl-test-exception)
1453 ("perl-test-pod" ,perl-test-pod)
1454 ("perl-test-warn" ,perl-test-warn)))
1456 `(("perl-class-unload" ,perl-class-unload)
1457 ("perl-class-inspector" ,perl-class-inspector)
1458 ("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1459 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1460 ("perl-carp-clan" ,perl-carp-clan)
1461 ("perl-data-dump" ,perl-data-dump)
1462 ("perl-dbix-class" ,perl-dbix-class)
1463 ("perl-hash-merge" ,perl-hash-merge)
1464 ("perl-list-moreutils" ,perl-list-moreutils)
1465 ("perl-lingua-en-inflect-phrase" ,perl-lingua-en-inflect-phrase)
1466 ("perl-lingua-en-inflect-number" ,perl-lingua-en-inflect-number)
1467 ("perl-lingua-en-tagger" ,perl-lingua-en-tagger)
1468 ("perl-namespace-clean" ,perl-namespace-clean)
1469 ("perl-mro-compat" ,perl-mro-compat)
1470 ("perl-scope-guard" ,perl-scope-guard)
1471 ("perl-string-camelcase" ,perl-string-camelcase)
1472 ("perl-string-toidentifier-en" ,perl-string-toidentifier-en)
1473 ("perl-sub-name" ,perl-sub-name)
1474 ("perl-try-tiny" ,perl-try-tiny)))
1475 (arguments `(#:tests? #f)) ;TODO: t/20invocations.t fails
1476 (home-page "https://metacpan.org/release/DBIx-Class-Schema-Loader")
1477 (synopsis "Create a DBIx::Class::Schema based on a database")
1478 (description "DBIx::Class::Schema::Loader automates the definition of a
1479 DBIx::Class::Schema by scanning database table definitions and setting up the
1480 columns, primary keys, unique constraints and relationships.")
1481 (license license:perl-license)))
1483 (define-public perl-dbd-pg
1485 (name "perl-dbd-pg")
1490 (uri (string-append "mirror://cpan/authors/id/T/TU/TURNSTEP/"
1491 "DBD-Pg-" version ".tar.gz"))
1494 "0gkqlvbmzbdm0g4k328nlkjdg3wrjm5i2n9jxj1i8sqxkm79rylz"))))
1495 (build-system perl-build-system)
1497 `(("perl-dbi" ,perl-dbi)))
1499 `(("perl-dbi" ,perl-dbi)
1500 ("postgresql" ,postgresql)))
1501 (home-page "https://metacpan.org/release/DBD-Pg")
1502 (synopsis "DBI PostgreSQL interface")
1503 (description "This package provides a PostgreSQL driver for the Perl5
1504 @dfn{Database Interface} (DBI).")
1505 (license license:perl-license)))
1507 (define-public perl-dbd-mysql
1509 (name "perl-dbd-mysql")
1514 (uri (string-append "mirror://cpan/authors/id/M/MI/MICHIELB/"
1515 "DBD-mysql-" version ".tar.gz"))
1518 "1zqmch6c9gq06z90mkmk1skajk2kaggriw19ym5w04l7wv5gydqp"))))
1519 (build-system perl-build-system)
1522 (modify-phases %standard-phases
1523 (add-before 'configure 'skip-library-detection
1524 ;; Avoid depencies on perl-devel-checklib, openssl, and zlib. They
1525 ;; are really only needed for the test suite; their absence does not
1526 ;; affect the build or the end result.
1528 (substitute* "Makefile.PL"
1529 (("use Devel::CheckLib;" match)
1530 (string-append "# " match))
1534 ;; Tests require running MySQL server.
1537 `(("perl-dbi" ,perl-dbi)
1539 (home-page "https://metacpan.org/release/DBD-mysql")
1540 (synopsis "DBI MySQL interface")
1541 (description "This package provides a MySQL driver for the Perl5
1542 @dfn{Database Interface} (DBI).")
1543 (license license:perl-license)))
1545 (define-public perl-dbd-sqlite
1547 (name "perl-dbd-sqlite")
1552 "mirror://cpan/authors/id/I/IS/ISHIGAKI/DBD-SQLite-"
1556 "0fqx386jgs9mmrknr7smmzapf07izgivza7x08lfm39ks2cxs83i"))))
1557 (build-system perl-build-system)
1558 (inputs `(("sqlite" ,sqlite)))
1559 (propagated-inputs `(("perl-dbi" ,perl-dbi)))
1560 (synopsis "SQlite interface for Perl")
1561 (description "DBD::SQLite is a Perl DBI driver for SQLite, that includes
1562 the entire thing in the distribution. So in order to get a fast transaction
1563 capable RDBMS working for your Perl project you simply have to install this
1564 module, and nothing else.")
1565 (license license:perl-license)
1566 (home-page "https://metacpan.org/release/DBD-SQLite")))
1568 (define-public perl-sql-abstract
1570 (name "perl-sql-abstract")
1575 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1576 "SQL-Abstract-" version ".tar.gz"))
1579 "1aycggrvppy2zgkwwn85jkdz93n5gsx4dambrjk67k5067hayi4z"))))
1580 (build-system perl-build-system)
1582 `(("perl-module-install" ,perl-module-install)
1583 ("perl-test-deep" ,perl-test-deep)
1584 ("perl-test-exception" ,perl-test-exception)
1585 ("perl-test-warn" ,perl-test-warn)))
1587 `(("perl-hash-merge" ,perl-hash-merge)
1588 ("perl-moo" ,perl-moo)
1589 ("perl-mro-compat" ,perl-mro-compat)
1590 ("perl-text-balanced" ,perl-text-balanced)))
1591 (home-page "https://metacpan.org/release/SQL-Abstract")
1592 (synopsis "Generate SQL from Perl data structures")
1593 (description "This module was inspired by the excellent DBIx::Abstract.
1594 While based on the concepts used by DBIx::Abstract, the concepts used have
1595 been modified to make the SQL easier to generate from Perl data structures.
1596 The underlying idea is for this module to do what you mean, based on the data
1597 structures you provide it, so that you don't have to modify your code every
1598 time your data changes.")
1599 (license license:perl-license)))
1601 (define-public perl-sql-splitstatement
1603 (name "perl-sql-splitstatement")
1608 (uri (string-append "mirror://cpan/authors/id/E/EM/EMAZEP/"
1609 "SQL-SplitStatement-" version ".tar.gz"))
1612 "0bqg45k4c9qkb2ypynlwhpvzsl4ssfagmsalys18s5c79ps30z7p"))))
1613 (build-system perl-build-system)
1615 `(("perl-test-exception" ,perl-test-exception)))
1617 `(("perl-class-accessor" ,perl-class-accessor)
1618 ("perl-list-moreutils" ,perl-list-moreutils)
1619 ("perl-regexp-common" ,perl-regexp-common)
1620 ("perl-sql-tokenizer" ,perl-sql-tokenizer)))
1621 (home-page "https://metacpan.org/release/SQL-SplitStatement")
1622 (synopsis "Split SQL code into atomic statements")
1623 (description "This module tries to split any SQL code, even including
1624 non-standard extensions, into the atomic statements it is composed of.")
1625 (license license:perl-license)))
1627 (define-public perl-sql-tokenizer
1629 (name "perl-sql-tokenizer")
1634 (uri (string-append "mirror://cpan/authors/id/I/IZ/IZUT/"
1635 "SQL-Tokenizer-" version ".tar.gz"))
1638 "1qa2dfbzdlr5qqdam9yn78z5w3al5r8577x06qan8wv58ay6ka7s"))))
1639 (build-system perl-build-system)
1640 (home-page "https://metacpan.org/release/SQL-Tokenizer")
1641 (synopsis "SQL tokenizer")
1642 (description "SQL::Tokenizer is a tokenizer for SQL queries. It does not
1643 claim to be a parser or query verifier. It just creates sane tokens from a
1645 (license license:perl-license)))
1647 (define-public unixodbc
1655 "ftp://ftp.unixodbc.org/pub/unixODBC/unixODBC-"
1658 (base32 "0xry3sg497wly8f7715a7gwkn2k36bcap0mvzjw74jj53yx6kwa5"))))
1659 (build-system gnu-build-system)
1660 (synopsis "Data source abstraction library")
1661 (description "Unixodbc is a library providing an API with which to access
1662 data sources. Data sources include SQL Servers and any software with an ODBC
1664 (license license:lgpl2.1+)
1665 ;; COPYING contains copy of lgpl2.1 - but copyright notices just say "LGPL"
1666 (home-page "http://www.unixodbc.org")))
1668 (define-public unqlite
1674 ;; Contains bug fixes against the official release, and has an
1675 ;; autotooled build system.
1676 (uri (string-append "https://github.com/aidin36/tocc/releases/"
1678 "unqlite-unofficial-" version ".tar.gz"))
1681 "1sbpvhg15gadq0mpcy16q7k3rkg4b4dicpnn5xifpkpn02sqik3s"))))
1682 (build-system gnu-build-system)
1683 (arguments `(#:tests? #f)) ;No check target
1684 (home-page "http://www.unqlite.org")
1685 (synopsis "In-memory key/value and document store")
1687 "UnQLite is an in-process software library which implements a
1688 self-contained, serverless, zero-configuration, transactional NoSQL
1689 database engine. UnQLite is a document store database similar to
1690 MongoDB, Redis, CouchDB, etc. as well as a standard Key/Value store
1691 similar to BerkeleyDB, LevelDB, etc.")
1692 (license license:bsd-2)))
1694 (define-public redis
1700 (uri (string-append "http://download.redis.io/releases/redis-"
1704 "194cydhv3hf4v95ifvjvsqrs4jn3ffrkg5lvxj5d3y04lwsp9dhx"))))
1705 (build-system gnu-build-system)
1707 '(#:tests? #f ; tests related to master/slave and replication fail
1708 #:phases (modify-phases %standard-phases
1709 (delete 'configure))
1710 #:make-flags `("CC=gcc"
1713 ,(string-append "PREFIX="
1714 (assoc-ref %outputs "out")))))
1715 (synopsis "Key-value cache and store")
1716 (description "Redis is an advanced key-value cache and store. Redis
1717 supports many data structures including strings, hashes, lists, sets, sorted
1718 sets, bitmaps and hyperloglogs.")
1719 (home-page "http://redis.io/")
1720 (license license:bsd-3)))
1722 (define-public kyotocabinet
1724 (name "kyotocabinet")
1728 (uri (string-append "http://fallabs.com/kyotocabinet/pkg/"
1729 name "-" version ".tar.gz"))
1732 "0g6js20x7vnpq4p8ghbw3mh9wpqksya9vwhzdx6dnlf354zjsal1"))))
1733 (build-system gnu-build-system)
1737 "--disable-opt" ;"-march=native". XXX this also turns off -O0.
1738 (string-append "LDFLAGS=-Wl,-rpath="
1739 (assoc-ref %outputs "out") "/lib"))))
1740 (inputs `(("zlib" ,zlib)))
1741 (home-page "http://fallabs.com/kyotocabinet/")
1743 "Kyoto Cabinet is a modern implementation of the DBM database")
1745 "Kyoto Cabinet is a standalone file-based database that supports Hash
1746 and B+ Tree data storage models. It is a fast key-value lightweight
1747 database and supports many programming languages. It is a NoSQL database.")
1748 (license license:gpl3+)))
1750 (define-public tokyocabinet
1752 (name "tokyocabinet")
1757 (uri (string-append "http://fallabs.com/tokyocabinet/"
1758 name "-" version ".tar.gz"))
1761 "140zvr0n8kvsl0fbn2qn3f2kh3yynfwnizn4dgbj47m975yg80x0"))))
1762 (build-system gnu-build-system)
1765 (list "--enable-pthread" "--enable-off64" "--enable-fastest"
1766 (string-append "LDFLAGS=-Wl,-rpath="
1767 (assoc-ref %outputs "out") "/lib"))))
1770 (home-page "http://fallabs.com/tokyocabinet/")
1771 (synopsis "Tokyo Cabinet is a modern implementation of the DBM database")
1773 "Tokyo Cabinet is a library of routines for managing a database.
1774 The database is a simple data file containing records, each is a pair of a
1775 key and a value. Every key and value is serial bytes with variable length.
1776 Both binary data and character string can be used as a key and a value.
1777 There is neither concept of data tables nor data types. Records are
1778 organized in hash table, B+ tree, or fixed-length array.")
1779 (license license:lgpl2.1+)))
1781 (define-public wiredtiger
1788 "http://source.wiredtiger.com/releases/wiredtiger-"
1789 version ".tar.bz2"))
1792 "0krwnb2zfbhvjaskwl875qzd3y626s84zcciq2mxr5c5riw3yh6s"))))
1793 (build-system gnu-build-system)
1795 '(#:configure-flags '("--enable-lz4" "--with-builtins=snappy,zlib")
1797 (modify-phases %standard-phases
1798 (add-before 'check 'disable-test/fops
1800 ;; XXX: timed out after 3600 seconds of silence
1801 (substitute* "Makefile"
1807 ("snappy" ,snappy)))
1808 (home-page "http://source.wiredtiger.com/")
1809 (synopsis "NoSQL data engine")
1811 "WiredTiger is an extensible platform for data management. It supports
1812 row-oriented storage (where all columns of a row are stored together),
1813 column-oriented storage (where columns are stored in groups, allowing for
1814 more efficient access and storage of column subsets) and log-structured merge
1815 trees (LSM), for sustained throughput under random insert workloads.")
1816 (license license:gpl3) ; or GPL-2
1817 ;; configure.ac: WiredTiger requires a 64-bit build.
1818 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))))
1820 (define-public wiredtiger-3
1822 (inherit wiredtiger)
1827 (uri (string-append "http://source.wiredtiger.com/releases/wiredtiger-"
1828 version ".tar.bz2"))
1831 "014awypv579ascg4jbx4pndj2wld337m79yyzrzyr7hxrff139jx"))))))
1833 (define-public guile-wiredtiger
1835 (name "guile-wiredtiger")
1840 (url "https://framagit.org/a-guile-mind/guile-wiredtiger.git")
1841 (commit "340ad4bc2ff4dcc6216a2f5c6f9172ca320ac66b")))
1842 (file-name (string-append name "-" version "-checkout"))
1845 "15j36bvxxzil7qpwlmh1rffqpva3ynvrcpqhhqbj2c9208ayz595"))))
1846 (build-system gnu-build-system)
1848 '(#:parallel-tests? #f ;; tests can't be run in parallel, yet.
1850 (list (string-append "--with-libwiredtiger-prefix="
1851 (assoc-ref %build-inputs "wiredtiger")))
1852 #:make-flags '("GUILE_AUTO_COMPILE=0")))
1854 `(("autoconf" ,autoconf)
1855 ("automake" ,automake)
1856 ("pkg-config" ,pkg-config)))
1858 `(("wiredtiger" ,wiredtiger-3)
1859 ("guile" ,guile-2.2)))
1861 `(("guile-bytestructures" ,guile-bytestructures)))
1862 (synopsis "WiredTiger bindings for GNU Guile")
1864 "This package provides Guile bindings to the WiredTiger ``NoSQL''
1866 (home-page "https://framagit.org/a-guile-mind/guile-wiredtiger")
1867 (license license:gpl3+)))
1869 (define-public perl-db-file
1871 (name "perl-db-file")
1877 "mirror://cpan/authors/id/P/PM/PMQS/DB_File-"
1882 "0w2d99vs9qarng2f9fpg3gchfdzy6an13507jhclcl8wv183h5hg"))))
1883 (build-system perl-build-system)
1884 (inputs `(("bdb" ,bdb)))
1885 (native-inputs `(("perl-test-pod" ,perl-test-pod)))
1887 `(#:phases (modify-phases %standard-phases
1889 'configure 'modify-config.in
1890 (lambda* (#:key inputs #:allow-other-keys)
1891 (substitute* "config.in"
1892 (("/usr/local/BerkeleyDB") (assoc-ref inputs "bdb")))
1894 (home-page "https://metacpan.org/release/DB_File")
1896 "Perl5 access to Berkeley DB version 1.x")
1898 "The DB::File module provides Perl bindings to the Berkeley DB version 1.x.")
1899 (license license:perl-license)))
1907 (uri (string-append "https://github.com/LMDB/lmdb/archive/"
1908 "LMDB_" version ".tar.gz"))
1911 "0a7a8535csrvw71mrgx680m5d17bnxmmhcccij30idifi1cpi4pk"))))
1912 (build-system gnu-build-system)
1914 `(#:test-target "test"
1916 (modify-phases %standard-phases
1918 (lambda* (#:key outputs #:allow-other-keys)
1919 (chdir (string-append
1920 (getenv "PWD") "/lmdb-LMDB_" ,version "/libraries/liblmdb"))
1921 (substitute* "Makefile"
1922 (("/usr/local") (assoc-ref outputs "out")))
1924 (home-page "https://symas.com/products/lightning-memory-mapped-database")
1925 (synopsis "Lightning Memory-Mapped Database library")
1927 "The @dfn{Lightning Memory-Mapped Database} (LMDB) is a high-performance
1928 transactional database. Unlike more complex relational databases, LMDB handles
1929 only key-value pairs (stored as arbitrary byte arrays) and relies on the
1930 underlying operating system for caching and locking, keeping the code small and
1932 The use of ‘zero-copy’ memory-mapped files combines the persistence of classic
1933 disk-based databases with high read performance that scales linearly over
1934 multiple cores. The size of each database is limited only by the size of the
1935 virtual address space — not physical RAM.")
1936 (license license:openldap2.8)))
1938 (define-public libpqxx
1945 "http://pqxx.org/download/software/libpqxx/"
1946 name "-" version ".tar.gz"))
1949 "0f6wxspp6rx12fkasanb0z2g2gc8dhcfwnxagx8wwqbpg6ifsz09"))))
1950 (build-system gnu-build-system)
1952 `(("python" ,python-2)))
1953 (inputs `(("postgresql" ,postgresql)))
1955 `(#:tests? #f ; # FAIL: 1
1957 (modify-phases %standard-phases
1958 (add-before 'configure 'fix-sed-command
1960 ;; Newer sed versions error out if double brackets are not used.
1961 (substitute* "configure"
1962 (("\\[:space:\\]") "[[:space:]]"))
1964 (synopsis "C++ connector for PostgreSQL")
1966 "Libpqxx is a C++ library to enable user programs to communicate with the
1967 PostgreSQL database back-end. The database back-end can be local or it may be
1968 on another machine, accessed via TCP/IP.")
1969 (home-page "http://pqxx.org/")
1970 (license license:bsd-3)))
1972 (define-public python-peewee
1974 (name "python-peewee")
1979 (uri (pypi-uri "peewee" version))
1982 "10f2mrd5hw6rjklrzaix2lsxlgc8vx3xak54arcy6yd791zhchi3"))))
1983 (build-system python-build-system)
1985 `(#:tests? #f)) ; Fails to import test data
1987 `(("python-cython" ,python-cython)))
1988 (home-page "https://github.com/coleifer/peewee/")
1989 (synopsis "Small object-relational mapping utility")
1991 "Peewee is a simple and small ORM (object-relation mapping) tool. Peewee
1992 handles converting between pythonic values and those used by databases, so you
1993 can use Python types in your code without having to worry. It has built-in
1994 support for sqlite, mysql and postgresql. If you already have a database, you
1995 can autogenerate peewee models using @code{pwiz}, a model generator.")
1996 (license license:expat)))
1998 (define-public python2-peewee
1999 (package-with-python2 python-peewee))
2001 (define-public sqlcipher
2008 (uri (string-append "https://github.com/sqlcipher/" name
2009 "/archive/v" version ".tar.gz"))
2011 (base32 "1nxarwbci8jx99f1d0y1ivxcv25s78l1p7q6qy28lkpkcx8pm2b9"))
2012 (file-name (string-append name "-" version ".tar.gz"))))
2013 (build-system gnu-build-system)
2015 `(("libcrypto" ,openssl)
2016 ("libtcl8.6" ,tcl))) ; required for running the tests
2021 '("--enable-tempstore=yes"
2022 "CFLAGS=-DSQLITE_HAS_CODEC -DSQLITE_ENABLE_FTS3"
2023 "LDFLAGS=-lcrypto -ltcl8.6"
2025 ;; tests cannot be run from the Makefile
2026 ;; see: <https://github.com/sqlcipher/sqlcipher/issues/172>
2027 #:test-target "testfixture"
2029 (modify-phases %standard-phases
2030 (add-before 'check 'build-test-runner
2031 (assoc-ref %standard-phases 'check))
2034 (invoke "./testfixture" "test/crypto.test"))))))
2035 (home-page "https://www.zetetic.net/sqlcipher/")
2037 "Library providing transparent encryption of SQLite database files")
2038 (description "SQLCipher is an implementation of SQLite, extended to
2039 provide transparent 256-bit AES encryption of database files. Pages are
2040 encrypted before being written to disk and are decrypted when read back. It’s
2041 well suited for protecting embedded application databases and for mobile
2044 ;; src/{crypto.c,crypto_impl.c,crypto.h,crypto_cc.c,crypto_libtomcrypt.c},
2045 ;; src/{crypto_openssl.c,sqlcipher.h}, tool/crypto-speedtest.tcl,
2046 ;; test/crypto.test are licensed under a 3-clause BSD license. All other
2047 ;; source files are in the public domain.
2048 (license (list license:public-domain license:bsd-3))))
2050 (define-public python-pyodbc-c
2052 (name "python-pyodbc-c")
2057 (uri (string-append "https://gitlab.com/daym/pyodbc-c/repository/"
2058 "archive.tar.gz?ref=v" version))
2061 "05aq2297k779xidmxcwkrrxjvj1bh2q7d9a1rcjv6zr15y764ga9"))
2062 (file-name (string-append name "-" version ".tar.gz"))))
2063 (build-system python-build-system)
2065 `(("unixodbc" ,unixodbc)))
2067 `(;; No unit tests exist.
2069 (home-page "https://github.com/mkleehammer/pyodbc")
2070 (synopsis "Python ODBC Library")
2071 (description "@code{python-pyodbc-c} provides a Python DB-API driver
2073 (license (license:x11-style "file://LICENSE.TXT"))))
2075 (define-public python2-pyodbc-c
2076 (package-with-python2 python-pyodbc-c))
2078 (define-public python-pyodbc
2080 (name "python-pyodbc")
2085 (uri (pypi-uri "pyodbc" version))
2088 "1m311vi7vpay1j7rkq71fpsk0gb7454k4lldk5b63hyy6yvsn9j3"))
2089 (file-name (string-append name "-" version ".tar.gz"))))
2090 (build-system python-build-system)
2092 `(("unixodbc" ,unixodbc)))
2094 `(;; No unit tests exist.
2096 (home-page "https://github.com/mkleehammer/pyodbc")
2097 (synopsis "Python ODBC Library")
2098 (description "@code{python-pyodbc} provides a Python DB-API driver
2100 (license (license:x11-style "file:///LICENSE.TXT"))))
2102 (define-public python2-pyodbc
2103 (package-with-python2 python-pyodbc))
2105 (define-public mdbtools
2113 (url "https://github.com/brianb/mdbtools.git")
2115 (file-name (git-file-name name version))
2118 "0gwcpp9y09xhs21g7my2fs8ncb8i6ahlyixcx8jd3q97jbzj441l"))))
2119 (build-system gnu-build-system)
2123 `(("autoconf" ,autoconf)
2124 ("automake" ,automake)
2125 ("libtool" ,libtool)
2126 ("pkg-config" ,pkg-config)
2127 ("txt2man" ,txt2man)
2129 (home-page "http://mdbtools.sourceforge.net/")
2130 (synopsis "Read Microsoft Access databases")
2131 (description "MDB Tools is a set of tools and applications to read the
2132 proprietary MDB file format used in Microsoft's Access database package. This
2133 includes programs to export schema and data from Microsoft's Access database
2134 file format to other databases such as MySQL, Oracle, Sybase, PostgreSQL,
2135 etc., and an SQL engine for performing simple SQL queries.")
2136 (license (list license:lgpl2.0
2139 (define-public python-lmdb
2141 (name "python-lmdb")
2145 (uri (pypi-uri "lmdb" version))
2148 "1zh38gvkqw1jm5105if6rr7ccbgyxr7k2rm5ygb9ab3bq82pyaww"))
2149 (modules '((guix build utils)))
2151 ;; Delete bundled lmdb source files.
2153 (for-each delete-file (list "lib/lmdb.h"
2158 (build-system python-build-system)
2163 (modify-phases %standard-phases
2164 (add-before 'build 'use-system-lmdb
2165 (lambda* (#:key inputs #:allow-other-keys)
2166 (let ((lmdb (assoc-ref inputs "lmdb")))
2167 (setenv "LMDB_FORCE_SYSTEM" "set")
2168 (setenv "LMDB_INCLUDEDIR" (string-append lmdb "/include"))
2169 (setenv "LMDB_LIBDIR" (string-append lmdb "/lib"))
2171 ;; Tests fail with: ‘lmdb.tool: Please specify environment (--env)’.
2173 (home-page "https://github.com/dw/py-lmdb")
2174 (synopsis "Python binding for the ‘Lightning’ database (LMDB)")
2176 "python-lmdb or py-lmdb is a Python binding for the @dfn{Lightning
2177 Memory-Mapped Database} (LMDB), a high-performance key-value store.")
2179 (list license:openldap2.8
2180 ;; ‘lib/win32/inttypes.h’ and ‘lib/win32-stdint/stdint.h’ are BSD-3,
2181 ;; but not actually needed on platforms currently supported by Guix.
2184 (define-public python2-lmdb
2185 (package-with-python2 python-lmdb))
2187 (define-public python-orator
2189 (name "python-orator")
2193 (uri (pypi-uri "orator" version))
2196 "14r58z64fdp76ixnvmi4lni762b405ynmsx6chr1qihs3yl9zn6c"))))
2197 (build-system python-build-system)
2200 (modify-phases %standard-phases
2201 (add-after 'unpack 'loosen-dependencies
2202 ;; Tests are not actually run since they are not included with the
2203 ;; distributed package, but dependencies are checked.
2205 (substitute* "setup.py"
2207 (("flexmock==0.9.7") "flexmock")
2208 ;; The pytest-mock package is out of date, so we remove minimum
2209 ;; version requirement.
2210 (("pytest-mock.*'") "pytest-mock'"))
2213 `(("python-pytest-mock" ,python-pytest-mock)
2214 ("python-pytest" ,python-pytest)
2215 ("python-flexmock" ,python-flexmock)))
2217 `(("python-backpack" ,python-backpack)
2218 ("python-blinker" ,python-blinker)
2219 ("python-cleo" ,python-cleo)
2220 ("python-faker" ,python-faker)
2221 ("python-inflection" ,python-inflection)
2222 ("python-lazy-object-proxy" ,python-lazy-object-proxy)
2223 ("python-pendulum" ,python-pendulum)
2224 ("python-pyaml" ,python-pyaml)
2225 ("python-pygments" ,python-pygments)
2226 ("python-simplejson" ,python-simplejson)
2227 ("python-six" ,python-six)
2228 ("python-wrapt" ,python-wrapt)))
2229 (home-page "https://orator-orm.com/")
2230 (synopsis "ActiveRecord ORM for Python")
2232 "Orator provides a simple ActiveRecord-like Object Relational Mapping
2233 implementation for Python.")
2234 (license license:expat)
2235 (properties `((python2-variant . ,(delay python2-orator))))))
2237 (define-public python2-orator
2238 (package-with-python2 (strip-python2-variant python-orator)))
2240 (define-public virtuoso-ose
2242 (name "virtuoso-ose")
2248 "https://github.com/openlink/virtuoso-opensource/releases/"
2249 "download/v" version "/virtuoso-opensource-" version ".tar.gz"))
2251 (base32 "0r1xakclkfi69pzh8z2k16z3x0m49pxp764icj0ad4w4bb97fr42"))))
2252 (build-system gnu-build-system)
2254 `(#:tests? #f ; Tests require a network connection.
2255 ;; TODO: Removing the libsrc/zlib source directory breaks the build.
2256 ;; This indicates that the internal zlib code may still be used.
2257 #:configure-flags '("--without-internal-zlib"
2258 "--with-readline")))
2260 `(("openssl" ,openssl)
2261 ("net-tools" ,net-tools)
2262 ("readline" ,readline)
2264 (home-page "http://vos.openlinksw.com/owiki/wiki/VOS/")
2265 (synopsis "Multi-model database system")
2266 (description "Virtuoso is a scalable cross-platform server that combines
2267 relational, graph, and document data management with web application server
2268 and web services platform functionality.")
2269 ;; configure: error: ... can only be build on 64bit platforms
2270 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))
2271 (license license:gpl2)))
2273 (define-public r-rmysql
2280 (uri (cran-uri "RMySQL" version))
2283 "0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n"))))
2284 (properties `((upstream-name . "RMySQL")))
2285 (build-system r-build-system)
2287 `(("pkg-config" ,pkg-config)))
2289 `(("mariadb" ,mariadb)
2292 `(("r-dbi" ,r-dbi)))
2293 (home-page "https://github.com/r-dbi/RMySQL")
2294 (synopsis "Database interface and MySQL driver for R")
2296 "This package provides a DBI interface to MySQL / MariaDB. The RMySQL
2297 package contains an old implementation based on legacy code from S-PLUS which
2298 is being phased out. A modern MySQL client based on Rcpp is available from
2299 the RMariaDB package.")
2300 (license license:gpl2)))
2302 (define-public python-ccm
2309 (uri (pypi-uri "ccm" version))
2312 "177dfxsmk3k4cih6fh6v8d91bh4nqx7ns6pc07w7m7i3cvdx3c8n"))))
2313 (build-system python-build-system)
2315 `(("python-pyyaml" ,python-pyyaml)
2316 ;; Not listed in setup.py, but used in ccmlib/node.py for full
2318 ("python-psutil" ,python-psutil)
2319 ("python-six" ,python-six)))
2320 (home-page "https://github.com/pcmanus/ccm")
2321 (synopsis "Cassandra Cluster Manager for Apache Cassandra clusters on
2323 (description "Cassandra Cluster Manager is a development tool for testing
2324 local Cassandra clusters. It creates, launches and removes Cassandra clusters
2326 (license license:asl2.0)))
2328 (define-public python2-ccm
2329 (package-with-python2 python-ccm))
2331 (define-public python2-pysqlite
2333 (name "python2-pysqlite")
2338 (uri (pypi-uri "pysqlite" version))
2341 "1424gwq9sil2ffmnizk60q36vydkv8rxs6m7xs987kz8cdc37lqp"))))
2342 (build-system python-build-system)
2344 `(("sqlite" ,sqlite)))
2346 `(#:python ,python-2 ; incompatible with Python 3
2347 #:tests? #f)) ; no test target
2348 (home-page "https://github.com/ghaering/pysqlite")
2349 (synopsis "SQLite bindings for Python")
2351 "Pysqlite provides SQLite bindings for Python that comply to the
2352 Database API 2.0T.")
2353 (license license:zlib)))
2355 (define-public python-sqlalchemy
2357 (name "python-sqlalchemy")
2362 (uri (string-append "https://pypi.python.org/packages/source/S/"
2363 "SQLAlchemy/SQLAlchemy-" version ".tar.gz"))
2366 "094mmbs4igrxplfyqd59j90jb83ixpbbzqc0w49yw81m82nnjrgg"))))
2367 (build-system python-build-system)
2369 `(("python-cython" ,python-cython) ;for c extensions
2370 ("python-pytest" ,python-pytest)
2371 ("python-mock" ,python-mock))) ;for tests
2374 (modify-phases %standard-phases
2376 (lambda _ (invoke "py.test"))))))
2377 (home-page "http://www.sqlalchemy.org")
2378 (synopsis "Database abstraction library")
2380 "SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that
2381 gives application developers the full power and flexibility of SQL. It
2382 provides a full suite of well known enterprise-level persistence patterns,
2383 designed for efficient and high-performing database access, adapted into a
2384 simple and Pythonic domain language.")
2385 (license license:x11)))
2387 (define-public python2-sqlalchemy
2388 (package-with-python2 python-sqlalchemy))
2390 (define-public python-sqlalchemy-utils
2392 (name "python-sqlalchemy-utils")
2397 (uri (pypi-uri "SQLAlchemy-Utils" version))
2400 "1myn71dn8j74xglyh46f12sh8ywb7j0j732rzwq70kvwwnq32m73"))))
2401 (build-system python-build-system)
2403 '(#:tests? #f)) ; FIXME: Many tests require a running database server.
2405 ;; (modify-phases %standard-phases
2408 ;; (zero? (system* "py.test" "sqlalchemy_utils" "tests")))))
2410 `(("python-six" ,python-six)
2411 ("python-sqlalchemy" ,python-sqlalchemy)))
2413 `(("python-dateutil" ,python-dateutil)
2414 ("python-flexmock" ,python-flexmock)
2415 ("python-psycopg2" ,python-psycopg2)
2416 ("python-pytest" ,python-pytest)
2417 ("python-pytz" ,python-pytz)))
2418 (home-page "https://github.com/kvesteri/sqlalchemy-utils")
2419 (synopsis "Various utility functions for SQLAlchemy")
2421 "SQLAlchemy-utils provides various utility functions and custom data types
2422 for SQLAlchemy. SQLAlchemy is an SQL database abstraction library for Python.
2424 You might also want to install the following optional dependencies:
2426 @item @code{python-passlib}
2427 @item @code{python-babel}
2428 @item @code{python-cryptography}
2429 @item @code{python-pytz}
2430 @item @code{python-psycopg2}
2431 @item @code{python-furl}
2432 @item @code{python-flask-babel}
2435 (license license:bsd-3)))
2437 (define-public python2-sqlalchemy-utils
2438 (package-with-python2 python-sqlalchemy-utils))
2440 (define-public python-alembic
2442 (name "python-alembic")
2447 (uri (pypi-uri "alembic" version))
2450 "0asqz9mwc4w8bsar1icv3ik9jslxrj3gv3yxgmhc6nc6r9qbkg04"))))
2451 (build-system python-build-system)
2453 `(("python-mock" ,python-mock)
2454 ("python-pytest-cov" ,python-pytest-cov)))
2456 `(("python-dateutil" ,python-dateutil)
2457 ("python-sqlalchemy" ,python-sqlalchemy)
2458 ("python-mako" ,python-mako)
2459 ("python-editor" ,python-editor)))
2460 (home-page "https://bitbucket.org/zzzeek/alembic")
2462 "Database migration tool for SQLAlchemy")
2464 "Alembic is a lightweight database migration tool for usage with the
2465 SQLAlchemy Database Toolkit for Python.")
2466 (license license:expat)))
2468 (define-public python2-alembic
2469 (package-with-python2 python-alembic))
2471 (define-public python-pickleshare
2473 (name "python-pickleshare")
2478 (uri (pypi-uri "pickleshare" version))
2480 (base32 "1jmghg3c53yp1i8cm6pcrm280ayi8621rwyav9fac7awjr3kss47"))))
2481 (build-system python-build-system)
2483 `(#:phases (modify-phases %standard-phases
2486 (invoke "pytest"))))))
2488 `(("python-pytest" ,python-pytest)))
2489 (home-page "https://github.com/vivainio/pickleshare")
2490 (synopsis "Tiny key value database with concurrency support")
2492 "PickleShare is a small ‘shelve’-like datastore with concurrency support.
2493 Like shelve, a PickleShareDB object acts like a normal dictionary. Unlike
2494 shelve, many processes can access the database simultaneously. Changing a
2495 value in database is immediately visible to other processes accessing the same
2496 database. Concurrency is possible because the values are stored in separate
2497 files. Hence the “database” is a directory where all files are governed by
2499 (properties `((python2-variant . ,(delay python2-pickleshare))))
2500 (license license:expat)))
2502 (define-public python2-pickleshare
2503 (let ((pickleshare (package-with-python2
2504 (strip-python2-variant python-pickleshare))))
2505 (package (inherit pickleshare)
2506 (propagated-inputs `(("python2-pathlib2" ,python2-pathlib2)
2507 ,@(package-propagated-inputs pickleshare))))))
2509 (define-public python-apsw
2511 (name "python-apsw")
2512 (version "3.20.1-r1")
2516 (uri (string-append "https://github.com/rogerbinns/apsw/archive/"
2518 (file-name (string-append "apsw-" version ".tar.gz"))
2521 "00ai7m2pqi26qaflhz314d8k5i3syw7xzr145fhfl0crhyh6adz2"))))
2522 (build-system python-build-system)
2524 `(("sqlite" ,sqlite)))
2527 (modify-phases %standard-phases
2530 (invoke "python" "setup.py" "build" "--enable-all-extensions")
2532 (add-after 'build 'build-test-helper
2534 (invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
2535 "-I." "-Isqlite3" "src/testextension.c")
2538 (add-after 'install 'check
2539 (lambda* (#:key inputs outputs #:allow-other-keys)
2540 (add-installed-pythonpath inputs outputs)
2541 (invoke "python" "setup.py" "test")
2543 (home-page "https://github.com/rogerbinns/apsw/")
2544 (synopsis "Another Python SQLite Wrapper")
2545 (description "APSW is a Python wrapper for the SQLite
2546 embedded relational database engine. In contrast to other wrappers such as
2547 pysqlite it focuses on being a minimal layer over SQLite attempting just to
2548 translate the complete SQLite API into Python.")
2549 (license license:zlib)))
2551 (define-public python2-apsw
2552 (package-with-python2 python-apsw))
2554 (define-public python2-neo4j-driver
2556 (name "python2-neo4j-driver")
2557 ;; NOTE: When upgrading to 1.5.0, please add a python3 variant.
2561 (uri (pypi-uri "neo4j-driver" version))
2564 "011r1vh182p8mm83d8dz9rfnc3l7rf7fd00cyrbyfzi71jmc4g98"))))
2565 (build-system python-build-system)
2567 `(#:python ,python-2))
2568 (home-page "https://neo4j.com/developer/python/")
2569 (synopsis "Neo4j driver code written in Python")
2570 (description "This package provides the Neo4j Python driver that connects
2571 to the database using Neo4j's binary protocol. It aims to be minimal, while
2572 being idiomatic to Python.")
2573 (license license:asl2.0)))
2575 (define-public python2-py2neo
2577 (name "python2-py2neo")
2581 (uri (pypi-uri "py2neo" version))
2584 "1f1q95vqcvlc3nsc33p841swnjdcjazddlq2dzi3qfnjqjrajxw1"))))
2585 (build-system python-build-system)
2587 `(#:python ,python-2))
2588 (home-page "http://py2neo.org")
2589 (synopsis "Library and toolkit for working with Neo4j in Python")
2590 (description "This package provides a client library and toolkit for
2591 working with Neo4j from within Python applications and from the command
2592 line. The core library has no external dependencies and has been carefully
2593 designed to be easy and intuitive to use.")
2594 (license license:asl2.0)))
2596 (define-public python-psycopg2
2598 (name "python-psycopg2")
2603 (uri (pypi-uri "psycopg2" version))
2606 "17klx964gw8z0znl0raz3by8vdc7cq5gxj4pdcrfcina84nrdkzc"))))
2607 (build-system python-build-system)
2609 ;; Tests would require a postgresql database "psycopg2_test"
2610 ;; and a running postgresql database management service.
2611 `(#:tests? #f)) ; TODO re-enable after providing a test-db.
2613 `(("postgresql" ,postgresql))) ; libpq
2614 (home-page "http://initd.org/psycopg/")
2615 (synopsis "Python PostgreSQL adapter")
2617 "psycopg2 is a thread-safe PostgreSQL adapter that implements DB-API
2619 (license license:lgpl3+)))
2621 (define-public python2-psycopg2
2622 (package-with-python2 python-psycopg2))
2624 (define-public python-sadisplay
2626 (name "python-sadisplay")
2631 (uri (pypi-uri "sadisplay" version))
2634 "01d9lxhmgpb68gy8rd6zj6fcwp84n2qq210n1qsk3qbsir79bzh4"))))
2635 (build-system python-build-system)
2637 `(("python-sqlalchemy" ,python-sqlalchemy)))
2640 `(("python-nose" ,python-nose)))
2641 (home-page "https://bitbucket.org/estin/sadisplay")
2642 (synopsis "SQLAlchemy schema displayer")
2643 (description "This package provides a program to build Entity
2644 Relationship diagrams from a SQLAlchemy model (or directly from the
2646 (license license:bsd-3)))
2648 (define-public python2-sadisplay
2649 (package-with-python2 python-sadisplay))
2651 (define-public python-mysqlclient
2653 (name "python-mysqlclient")
2658 (uri (pypi-uri "mysqlclient" version))
2661 "0kv4a1icwdav8jpl7qvnr931lw5h3v22ids6lwq6qpi1hjzf33pz"))))
2662 (build-system python-build-system)
2664 `(("mariadb" ,mariadb)
2665 ("nose" ,python-nose)
2666 ("mock" ,python-mock)
2667 ("py.test" ,python-pytest)))
2671 ("openssl" ,openssl)))
2672 (home-page "https://github.com/PyMySQL/mysqlclient-python")
2673 (synopsis "MySQLdb is an interface to the popular MySQL database server for Python")
2674 (description "MySQLdb is an interface to the popular MySQL database server
2675 for Python. The design goals are:
2677 @item Compliance with Python database API version 2.0 [PEP-0249],
2678 @item Thread-safety,
2679 @item Thread-friendliness (threads will not block each other).
2681 (license license:gpl2)))
2683 (define-public python2-mysqlclient
2684 (package-with-python2 python-mysqlclient))
2686 (define-public python-hiredis
2688 (name "python-hiredis")
2693 (uri (pypi-uri "hiredis" version))
2696 "1dfm2k9l9zar9nw9fwmm74zrgraxdxs04vx9li56fjcf289qx5fa"))))
2697 (build-system python-build-system)
2701 (home-page "https://github.com/redis/hiredis-py")
2702 (synopsis "Python extension that wraps protocol parsing code in hiredis")
2703 (description "Python-hiredis is a python extension that wraps protocol
2704 parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.")
2705 (license license:bsd-3)))
2707 (define-public python2-hiredis
2708 (package-with-python2 python-hiredis))
2710 (define-public python-fakeredis
2712 (name "python-fakeredis")
2717 (uri (pypi-uri "fakeredis" version))
2720 "0zncahj3byyasyfx9i7k991ph0n0lq8v3a21pqri5qxn9564bk9r"))))
2721 (build-system python-build-system)
2725 (home-page "https://github.com/jamesls/fakeredis")
2726 (synopsis "Fake implementation of redis API for testing purposes")
2728 "Fakeredis is a pure-Python implementation of the redis-py Python client
2729 that simulates talking to a redis server. It was created for a single purpose:
2730 to write unit tests.
2732 Setting up redis is not hard, but one often wants to write unit tests that don't
2733 talk to an external server such as redis. This module can be used as a
2734 reasonable substitute.")
2735 (license license:bsd-3)))
2737 (define-public python2-fakeredis
2738 (package-with-python2 python-fakeredis))
2740 (define-public python-redis
2742 (name "python-redis")
2747 (uri (pypi-uri "redis" version))
2749 (base32 "03vcgklykny0g0wpvqmy8p6azi2s078317wgb2xjv5m2rs9sjb52"))))
2750 (build-system python-build-system)
2751 ;; Tests require a running Redis server
2752 (arguments '(#:tests? #f))
2753 ;; As long as we are not running test, we do not need this input :-)
2755 ;; `(("python-pytest" ,python-pytest)))
2756 (home-page "https://github.com/andymccurdy/redis-py")
2757 (synopsis "Redis Python client")
2759 "This package provides a Python interface to the Redis key-value store.")
2760 (license license:expat)))
2762 (define-public python2-redis
2763 (package-with-python2 python-redis))
2765 (define-public python-rq
2772 (uri (pypi-uri "rq" version))
2774 (base32 "16d8kni57xlnah2hawy4xgw21xrv3f64j5q5shyp3zxx4yd9iibs"))))
2775 (build-system python-build-system)
2777 `(("python-click" ,python-click)
2778 ("python-redis" ,python-redis)))
2779 (home-page "http://python-rq.org/")
2780 (synopsis "Simple job queues for Python")
2782 "RQ (Redis Queue) is a simple Python library for queueing jobs and
2783 processing them in the background with workers. It is backed by Redis and it
2784 is designed to have a low barrier to entry.")
2785 (license license:bsd-2)))
2787 (define-public python2-rq
2788 (package-with-python2 python-rq))
2790 (define-public python-trollius-redis
2792 (name "python-trollius-redis")
2797 (uri (pypi-uri "trollius_redis" version))
2800 "0k3vypszmgmaipgw9xscvgm79h2zd6p6ci8gdp5sxl6g5kbqr9fy"))))
2801 (build-system python-build-system)
2802 ;; TODO: Tests require packaging 'hiredis'.
2803 (arguments '(#:tests? #f))
2804 (home-page "https://github.com/benjolitz/trollius-redis")
2805 (synopsis "Port of asyncio-redis to trollius")
2806 (description "@code{trollius-redis} is a Redis client for Python
2807 trollius. It is an asynchronious IO (PEP 3156) implementation of the
2809 (license license:bsd-2)))
2811 (define-public python2-trollius-redis
2812 (package-with-python2 python-trollius-redis))
2814 (define-public python-sqlparse
2816 (name "python-sqlparse")
2820 (uri (pypi-uri "sqlparse" version))
2823 "1v3xh0bkfhb262dbndgzhivpnhdwavdzz8jjhx9vx0xbrx2880nf"))))
2824 (build-system python-build-system)
2827 (modify-phases %standard-phases
2829 (lambda _ (invoke "py.test"))))))
2831 `(("python-pytest" ,python-pytest)))
2832 (home-page "https://github.com/andialbrecht/sqlparse")
2833 (synopsis "Non-validating SQL parser")
2834 (description "Sqlparse is a non-validating SQL parser for Python. It
2835 provides support for parsing, splitting and formatting SQL statements.")
2836 (license license:bsd-3)))
2838 (define-public python2-sqlparse
2839 (package-with-python2 python-sqlparse))
2841 (define-public python-sql
2848 (uri (pypi-uri "python-sql" version))
2851 "0p6kaqj02vz0habmdx37zjk6hjxdfm8aw737zs059vvpr70ird87"))))
2852 (build-system python-build-system)
2853 (home-page "https://python-sql.tryton.org/")
2854 (synopsis "Library to write SQL queries in a pythonic way")
2855 (description "@code{python-sql} is a library to write SQL queries, that
2856 transforms idiomatic python function calls to well-formed SQL queries.")
2857 (license license:bsd-3)))
2859 (define-public python2-sql
2860 (package-with-python2 python-sql))
2862 (define-public mongo-tools
2864 (name "mongo-tools")
2867 (origin (method git-fetch)
2869 (url "https://github.com/mongodb/mongo-tools")
2870 (commit (string-append "r" version))))
2871 (file-name (git-file-name name version))
2874 "1bcsz5cvj39a7nsxsfqmz9igrw33j6yli9kffigqyscs52amw7x1"))))
2875 (build-system go-build-system)
2877 `(#:import-path "github.com/mongodb/mongo-tools"
2878 #:modules ((srfi srfi-1)
2879 (guix build go-build-system)
2883 '("bsondump" "mongodump" "mongoexport" "mongofiles"
2884 "mongoimport" "mongooplog" "mongorestore"
2885 "mongostat" "mongotop")))
2886 (modify-phases %standard-phases
2887 (add-after 'unpack 'delete-bundled-source-code
2889 (delete-file-recursively
2890 "src/github.com/mongodb/mongo-tools/vendor")
2892 (add-after 'delete-bundled-source-code 'patch-source
2894 ;; Remove a redundant argument that causes compilation to fail.
2896 "src/github.com/mongodb/mongo-tools/mongorestore/filepath.go"
2897 (("skipping restore of system.profile collection\", db)")
2898 "skipping restore of system.profile collection\")"))
2900 ;; We don't need to install the source code for end-user applications
2901 (delete 'install-source)
2904 (for-each (lambda (tool)
2907 ;; This is where the tests expect to find the
2909 "-o" ,(string-append
2910 "src/github.com/mongodb/mongo-tools/bin/"
2913 "-tags=\"ssl sasl\""
2915 "-extldflags=-Wl,-z,now,-z,relro"
2917 "src/github.com/mongodb/mongo-tools/"
2918 tool "/main/" tool ".go"))))
2919 (simple-format #t "build: running ~A\n"
2920 (string-join command))
2921 (apply invoke command)))
2926 (with-directory-excursion "src"
2927 (for-each (lambda (tool)
2930 (string-append "github.com/mongodb/mongo-tools/"
2935 (lambda* (#:key outputs #:allow-other-keys)
2936 (for-each (lambda (tool)
2938 (string-append "src/github.com/mongodb/mongo-tools/bin/"
2940 (string-append (assoc-ref outputs "out")
2945 `(("go-github.com-howeyc-gopass" ,go-github.com-howeyc-gopass)
2946 ("go-github.com-jessevdk-go-flags" ,go-github.com-jessevdk-go-flags)
2947 ("go-golang.org-x-crypto-ssh-terminal" ,go-golang.org-x-crypto-ssh-terminal)
2948 ("go-gopkg.in-mgo.v2" ,go-gopkg.in-mgo.v2)
2949 ("go-gopkg.in-tomb.v2" ,go-gopkg.in-tomb.v2)
2950 ("go-github.com-nsf-termbox-go" ,go-github.com-nsf-termbox-go)
2951 ("go-github.com-smartystreets-goconvey" ,go-github.com-smartystreets-goconvey)))
2952 (home-page "https://github.com/mongodb/mongo-tools")
2953 (synopsis "Various tools for interacting with MongoDB and BSON")
2955 "This package includes a collection of tools related to MongoDB.
2958 Display BSON files in a human-readable format
2960 Convert data from JSON, TSV or CSV and insert them into a collection
2962 Write an existing collection to CSV or JSON format
2963 @item mongodump/mongorestore
2964 Dump MongoDB backups to disk in the BSON format
2966 Read MongoDB backups in the BSON format, and restore them to a live database
2968 Monitor live MongoDB servers, replica sets, or sharded clusters
2970 Read, write, delete, or update files in GridFS
2972 Replay oplog entries between MongoDB servers
2974 Monitor read/write activity on a mongo server
2976 (license license:asl2.0)))
2978 (define-public apache-arrow
2980 (name "apache-arrow")
2986 (url "https://github.com/apache/arrow")
2987 (commit (string-append "apache-arrow-" version))))
2988 (file-name (git-file-name name version))
2991 "1x7sdd8lbs3nfqjql1pcgbkjc19bls56zmgjayshkmablvlc4dy3"))))
2992 (build-system cmake-build-system)
2996 (modify-phases %standard-phases
2997 (add-before 'configure 'enter-source-directory
2998 (lambda _ (chdir "cpp") #t))
2999 (add-after 'unpack 'set-env
3001 (setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
3002 (setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
3003 (setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs "flatbuffers"))
3004 (setenv "JEMALLOC_HOME" (assoc-ref %build-inputs "jemalloc"))
3005 (setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson"))
3007 #:build-type "Release"
3009 (list "-DARROW_PYTHON=ON"
3011 ;; Install to PREFIX/lib (the default is
3013 (string-append "-DCMAKE_INSTALL_LIBDIR="
3014 (assoc-ref %outputs "out")
3017 ;; XXX These Guix package offer static
3018 ;; libraries that are not position independent,
3019 ;; and ld fails to link them into the arrow .so
3020 "-DARROW_WITH_SNAPPY=OFF"
3021 "-DARROW_WITH_ZLIB=OFF"
3022 "-DARROW_WITH_ZSTD=OFF"
3023 "-DARROW_WITH_LZ4=OFF"
3025 ;; Building the tests forces on all the
3026 ;; optional features and the use of static
3028 "-DARROW_BUILD_TESTS=OFF"
3029 "-DARROW_BUILD_STATIC=OFF")))
3032 ("rapidjson" ,rapidjson)
3033 ("brotli" ,google-brotli)
3034 ("flatbuffers" ,flatbuffers)
3035 ;; Arrow is not yet compatible with jemalloc >= 5:
3036 ;; https://issues.apache.org/jira/browse/ARROW-1141
3037 ("jemalloc" ,jemalloc-4.5.0)
3038 ("python-3" ,python)
3039 ("python-numpy" ,python-numpy)))
3040 (home-page "https://arrow.apache.org/")
3041 (synopsis "Columnar in-memory analytics")
3042 (description "Apache Arrow is a columnar in-memory analytics layer
3043 designed to accelerate big data. It houses a set of canonical in-memory
3044 representations of flat and hierarchical data along with multiple
3045 language-bindings for structure manipulation. It also provides IPC and common
3046 algorithm implementations.")
3047 (license license:asl2.0)))
3049 (define-public python-pyarrow
3051 (name "python-pyarrow")
3057 (url "https://github.com/apache/arrow")
3058 (commit (string-append "apache-arrow-" version))))
3059 (file-name (git-file-name name version))
3062 "1x7sdd8lbs3nfqjql1pcgbkjc19bls56zmgjayshkmablvlc4dy3"))))
3063 (build-system python-build-system)
3065 '(#:tests? #f ; XXX Test failures related to missing libhdfs, libhdfs3,
3066 ; and "Unsupported numpy type 22".
3068 (modify-phases %standard-phases
3069 (add-after 'unpack 'enter-source-directory
3070 (lambda _ (chdir "python") #t))
3071 (add-after 'unpack 'set-env
3073 (setenv "ARROW_HOME" (assoc-ref %build-inputs "apache-arrow"))
3076 `(("apache-arrow" ,apache-arrow)
3077 ("python-numpy" ,python-numpy)
3078 ("python-pandas" ,python-pandas)
3079 ("python-six" ,python-six)))
3082 ("python-cython" ,python-cython)
3083 ("python-pytest" ,python-pytest)
3084 ("python-setuptools-scm" ,python-setuptools-scm)))
3085 (home-page "https://arrow.apache.org/docs/python/")
3086 (synopsis "Python bindings for Apache Arrow")
3087 (description "This library provides a Pythonic API wrapper for the reference
3088 Arrow C++ implementation, along with tools for interoperability with pandas,
3089 NumPy, and other traditional Python scientific computing packages.")
3090 (license license:asl2.0)))
3092 (define-public python2-pyarrow
3093 (package-with-python2 python-pyarrow))