gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018, 2019 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Vagrant Cascadian <vagrant@reproducible-builds.org>
  14 ;;; Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
  15 ;;;
  16 ;;; This file is part of GNU Guix.
  17 ;;;
  18 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  19 ;;; under the terms of the GNU General Public License as published by
  20 ;;; the Free Software Foundation; either version 3 of the License, or (at
  21 ;;; your option) any later version.
  22 ;;;
  23 ;;; GNU Guix is distributed in the hope that it will be useful, but
  24 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  25 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  26 ;;; GNU General Public License for more details.
  27 ;;;
  28 ;;; You should have received a copy of the GNU General Public License
  29 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  30
  31 (define-module (gnu packages package-management)
  32   #:use-module (gnu packages)
  33   #:use-module (gnu packages acl)
  34   #:use-module (gnu packages attr)
  35   #:use-module (gnu packages avahi)
  36   #:use-module (gnu packages autotools)
  37   #:use-module (gnu packages backup)
  38   #:use-module (gnu packages base)
  39   #:use-module (gnu packages bdw-gc)
  40   #:use-module (gnu packages bison)
  41   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  42   #:use-module (gnu packages check)
  43   #:use-module (gnu packages compression)
  44   #:use-module (gnu packages cpio)
  45   #:use-module (gnu packages crypto)
  46   #:use-module (gnu packages curl)
  47   #:use-module (gnu packages dbm)
  48   #:use-module (gnu packages docbook)
  49   #:use-module (gnu packages file)
  50   #:use-module (gnu packages gettext)
  51   #:use-module (gnu packages glib)
  52   #:use-module (gnu packages gnome)
  53   #:use-module (gnu packages gnupg)
  54   #:use-module (gnu packages graphviz)
  55   #:use-module (gnu packages gtk)
  56   #:use-module (gnu packages guile)
  57   #:use-module (gnu packages guile-xyz)
  58   #:use-module (gnu packages linux)
  59   #:use-module (gnu packages lisp)
  60   #:use-module (gnu packages man)
  61   #:use-module (gnu packages nettle)
  62   #:use-module (gnu packages nss)
  63   #:use-module (gnu packages patchutils)
  64   #:use-module (gnu packages perl)
  65   #:use-module (gnu packages perl-check)
  66   #:use-module (gnu packages pkg-config)
  67   #:use-module (gnu packages popt)
  68   #:use-module (gnu packages python)
  69   #:use-module (gnu packages python-web)
  70   #:use-module (gnu packages python-xyz)
  71   #:use-module (gnu packages serialization)
  72   #:use-module (gnu packages sqlite)
  73   #:use-module (gnu packages ssh)
  74   #:use-module (gnu packages texinfo)
  75   #:use-module (gnu packages time)
  76   #:use-module (gnu packages tls)
  77   #:use-module (gnu packages vim)
  78   #:use-module (gnu packages virtualization)
  79   #:use-module (gnu packages web)
  80   #:use-module (gnu packages xml)
  81   #:use-module (gnu packages xorg)
  82   #:use-module (guix build-system glib-or-gtk)
  83   #:use-module (guix build-system gnu)
  84   #:use-module (guix build-system meson)
  85   #:use-module (guix build-system python)
  86   #:use-module (guix download)
  87   #:use-module (guix gexp)
  88   #:use-module (guix git-download)
  89   #:use-module ((guix licenses) #:prefix license:)
  90   #:use-module (guix packages)
  91   #:use-module (guix utils)
  92   #:use-module (ice-9 match)
  93   #:use-module (srfi srfi-1))
  94
  95 (define (boot-guile-uri arch)
  96   "Return the URI for the bootstrap Guile tarball for ARCH."
  97   (cond ((string=? "armhf" arch)
  98          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  99                         arch "-linux"
 100                         "/20150101/guile-2.0.11.tar.xz"))
 101         ((string=? "aarch64" arch)
 102          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 103                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 104         (else
 105          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 106                         arch "-linux"
 107                         "/20131110/guile-2.0.9.tar.xz"))))
 108
 109 (define-public guix
 110   ;; Latest version of Guix, which may or may not correspond to a release.
 111   ;; Note: the 'update-guix-package.scm' script expects this definition to
 112   ;; start precisely like this.
 113   (let ((version "1.0.1")
 114         (commit "4a54ed774913480c0f8dad3caf0cd627e4fa8ebf")
 115         (revision 3))
 116     (package
 117       (name "guix")
 118
 119       (version (if (zero? revision)
 120                    version
 121                    (string-append version "-"
 122                                   (number->string revision)
 123                                   "." (string-take commit 7))))
 124       (source (origin
 125                 (method git-fetch)
 126                 (uri (git-reference
 127                       (url "https://git.savannah.gnu.org/r/guix.git")
 128                       (commit commit)))
 129                 (sha256
 130                  (base32
 131                   "14m4a4bn0d5hav6mrks5d7r223knx9dpswgbsc875wgr2921na2h"))
 132                 (file-name (string-append "guix-" version "-checkout"))))
 133       (build-system gnu-build-system)
 134       (arguments
 135        `(#:configure-flags (list
 136                             "--localstatedir=/var"
 137                             "--sysconfdir=/etc"
 138                             (string-append "--with-bash-completion-dir="
 139                                            (assoc-ref %outputs "out")
 140                                            "/etc/bash_completion.d")
 141
 142                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 143                             ;; we don't keep a reference to Graphviz, whose
 144                             ;; closure is pretty big (too big for the Guix
 145                             ;; system installation image.)
 146                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 147
 148                             ;; To avoid problems with the length of shebangs,
 149                             ;; choose a fixed-width and short directory name
 150                             ;; for tests.
 151                             "ac_cv_guix_test_root=/tmp/guix-tests")
 152          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 153
 154          #:modules ((guix build gnu-build-system)
 155                     (guix build utils)
 156                     (srfi srfi-26)
 157                     (ice-9 popen)
 158                     (ice-9 rdelim))
 159
 160          #:phases (modify-phases %standard-phases
 161                     (replace 'bootstrap
 162                       (lambda _
 163                         ;; Make sure 'msgmerge' can modify the PO files.
 164                         (for-each (lambda (po)
 165                                     (chmod po #o666))
 166                                   (find-files "." "\\.po$"))
 167
 168                         (patch-shebang "build-aux/git-version-gen")
 169
 170                         (call-with-output-file ".tarball-version"
 171                           (lambda (port)
 172                             (display ,version port)))
 173
 174                         (invoke "sh" "bootstrap")))
 175                     (add-before 'check 'copy-bootstrap-guile
 176                       (lambda* (#:key system inputs #:allow-other-keys)
 177                         ;; Copy the bootstrap guile tarball in the store used
 178                         ;; by the test suite.
 179                         (define (intern tarball)
 180                           (let ((base (strip-store-file-name tarball)))
 181                             (copy-file tarball base)
 182                             (invoke "./test-env" "guix" "download"
 183                                     (string-append "file://" (getcwd)
 184                                                    "/" base))
 185                             (delete-file base)))
 186
 187
 188                         (intern (assoc-ref inputs "boot-guile"))
 189
 190                         ;; On x86_64 some tests need the i686 Guile.
 191                         ,@(if (and (not (%current-target-system))
 192                                    (string=? (%current-system)
 193                                              "x86_64-linux"))
 194                               '((intern (assoc-ref inputs "boot-guile/i686")))
 195                               '())
 196                         #t))
 197                     (add-after 'unpack 'disable-failing-tests
 198                       ;; XXX FIXME: These tests fail within the build container.
 199                       (lambda _
 200                         (substitute* "tests/syscalls.scm"
 201                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 202                            (string-append "(test-skip 1)\n" all)))
 203                         (substitute* "tests/containers.scm"
 204                           (("^\\(test-(assert|equal)" all)
 205                            (string-append "(test-skip 1)\n" all)))
 206                         (when (file-exists? "tests/guix-environment-container.sh")
 207                           (substitute* "tests/guix-environment-container.sh"
 208                             (("guix environment --version")
 209                              "exit 77\n")))
 210                         #t))
 211                     (add-before 'check 'set-SHELL
 212                       (lambda _
 213                         ;; 'guix environment' tests rely on 'SHELL' having a
 214                         ;; correct value, so set it.
 215                         (setenv "SHELL" (which "sh"))
 216                         #t))
 217                     (add-after 'install 'wrap-program
 218                       (lambda* (#:key inputs outputs #:allow-other-keys)
 219                         ;; Make sure the 'guix' command finds GnuTLS,
 220                         ;; Guile-JSON, and Guile-Git automatically.
 221                         (let* ((out    (assoc-ref outputs "out"))
 222                                (guile  (assoc-ref inputs "guile"))
 223                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 224                                (json   (assoc-ref inputs "guile-json"))
 225                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 226                                (git    (assoc-ref inputs "guile-git"))
 227                                (bs     (assoc-ref inputs
 228                                                   "guile-bytestructures"))
 229                                (ssh    (assoc-ref inputs "guile-ssh"))
 230                                (gnutls (assoc-ref inputs "gnutls"))
 231                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 232                                (deps   (list gcrypt json sqlite gnutls
 233                                              git bs ssh))
 234                                (effective
 235                                 (read-line
 236                                  (open-pipe* OPEN_READ
 237                                              (string-append guile "/bin/guile")
 238                                              "-c" "(display (effective-version))")))
 239                                (path   (string-join
 240                                         (map (cut string-append <>
 241                                                   "/share/guile/site/"
 242                                                   effective)
 243                                              (delete #f deps))
 244                                         ":"))
 245                                (gopath (string-join
 246                                         (map (cut string-append <>
 247                                                   "/lib/guile/" effective
 248                                                   "/site-ccache")
 249                                              (delete #f deps))
 250                                         ":"))
 251                                (locpath (string-append locales "/lib/locale")))
 252
 253                           (wrap-program (string-append out "/bin/guix")
 254                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 255                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 256                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 257
 258                           #t))))))
 259       (native-inputs `(("pkg-config" ,pkg-config)
 260
 261                        ;; XXX: Keep the development inputs here even though
 262                        ;; they're unnecessary, just so that 'guix environment
 263                        ;; guix' always contains them.
 264                        ("autoconf" ,autoconf-wrapper)
 265                        ("automake" ,automake)
 266                        ("gettext" ,gettext-minimal)
 267                        ("texinfo" ,texinfo)
 268                        ("graphviz" ,graphviz)
 269                        ("help2man" ,help2man)
 270                        ("po4a" ,po4a)))
 271       (inputs
 272        `(("bzip2" ,bzip2)
 273          ("gzip" ,gzip)
 274          ("zlib" ,zlib)                           ;for 'guix publish'
 275          ("lzlib" ,lzlib)            ;for 'guix publish' and 'guix substitute'
 276
 277          ("sqlite" ,sqlite)
 278          ("libgcrypt" ,libgcrypt)
 279
 280          ("guile" ,guile-2.2)
 281
 282          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 283          ;; have it here.
 284          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 285          ;; Some of the tests use "unshare" when it is available.
 286          ("util-linux" ,util-linux)
 287          ,@(if (and (not (%current-target-system))
 288                     (string=? (%current-system) "x86_64-linux"))
 289                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 290                '())
 291
 292          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 293       (propagated-inputs
 294        `(("gnutls" ,gnutls)
 295          ("guile-gcrypt" ,guile-gcrypt)
 296          ("guile-json" ,guile-json-1)
 297          ("guile-sqlite3" ,guile-sqlite3)
 298          ("guile-ssh" ,guile-ssh)
 299          ("guile-git" ,guile-git)))
 300
 301       (home-page "https://www.gnu.org/software/guix/")
 302       (synopsis "Functional package manager for installed software packages and versions")
 303       (description
 304        "GNU Guix is a functional package manager for the GNU system, and is
 305 also a distribution thereof.  It includes a virtual machine image.  Besides
 306 the usual package management features, it also supports transactional
 307 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 308 the Nix package manager.")
 309       (license license:gpl3+)
 310       (properties '((ftp-server . "alpha.gnu.org"))))))
 311
 312 (define-public guix-daemon
 313   ;; This package is for internal consumption: it allows us to quickly build
 314   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 315   ;; pull'.
 316   (package
 317     (inherit guix)
 318     (properties `((hidden? . #t)))
 319     (name "guix-daemon")
 320
 321     ;; Use a minimum set of dependencies.
 322     (native-inputs
 323      (fold alist-delete (package-native-inputs guix)
 324            '("po4a" "graphviz" "help2man")))
 325     (inputs
 326      `(("gnutls" ,gnutls)
 327        ("guile-git" ,guile-git)
 328        ("guile-json" ,guile-json-1)
 329        ("guile-gcrypt" ,guile-gcrypt)
 330        ,@(fold alist-delete (package-inputs guix)
 331                '("boot-guile" "boot-guile/i686" "util-linux"))))
 332
 333     (propagated-inputs '())
 334
 335     (arguments
 336      (substitute-keyword-arguments (package-arguments guix)
 337        ((#:configure-flags flags '())
 338         ;; Pretend we have those libraries; we don't actually need them.
 339         `(append ,flags
 340                  '("guix_cv_have_recent_guile_sqlite3=yes"
 341                    "guix_cv_have_recent_guile_ssh=yes")))
 342        ((#:tests? #f #f)
 343         #f)
 344        ((#:phases phases '%standard-phases)
 345         `(modify-phases ,phases
 346            (replace 'build
 347              (lambda _
 348                (invoke "make" "nix/libstore/schema.sql.hh")
 349                (invoke "make" "-j" (number->string
 350                                     (parallel-job-count))
 351                        "guix-daemon")))
 352            (delete 'copy-bootstrap-guile)
 353            (replace 'install
 354              (lambda* (#:key outputs #:allow-other-keys)
 355                (invoke "make" "install-binPROGRAMS"
 356                        "install-nodist_pkglibexecSCRIPTS")
 357
 358                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 359                ;; Here we use a questionable hack where we hard-code root's
 360                ;; current guix, which could be wrong (XXX).  Note that scripts
 361                ;; like 'guix perform-download' do not run as root so we assume
 362                ;; that they have access to /var/guix/profiles/per-user/root.
 363                (let ((out (assoc-ref outputs "out")))
 364                  (substitute* (find-files (string-append out "/libexec"))
 365                    (("exec \".*/bin/guix\"")
 366                     "exec \"${GUIX:-/var/guix/profiles/per-user/root/current-guix/bin/guix}\""))
 367                  #t)))
 368            (delete 'wrap-program)))))))
 369
 370 (define-public guile2.0-guix
 371   (deprecated-package "guile2.0-guix" guix))
 372
 373 (define-public guix-minimal
 374   ;; A version of Guix which is built with the minimal set of dependencies, as
 375   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 376   ;; marked as hidden.
 377   (hidden-package
 378    (package
 379      (inherit guix)
 380      (name "guix-minimal")
 381      (inputs
 382       `(("guile" ,guile-2.2)
 383         ,@(alist-delete "guile" (package-inputs guix))))
 384      (propagated-inputs
 385       (fold alist-delete
 386             (package-propagated-inputs guix)
 387             '("guile-ssh"))))))
 388
 389 (define (source-file? file stat)
 390   "Return true if FILE is likely a source file, false if it is a typical
 391 generated file."
 392   (define (wrong-extension? file)
 393     (or (string-suffix? "~" file)
 394         (member (file-extension file)
 395                 '("o" "a" "lo" "so" "go"))))
 396
 397   (match (basename file)
 398     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 399      #f)
 400     ((? wrong-extension?)
 401      #f)
 402     (_
 403      #t)))
 404
 405 (define-public current-guix-package
 406   ;; This parameter allows callers to override the package that 'current-guix'
 407   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 408   ;; for instance because it's not running from a source code checkout.
 409   (make-parameter #f))
 410
 411 (define-public current-guix
 412   (let* ((repository-root (delay (canonicalize-path
 413                                   (string-append (current-source-directory)
 414                                                  "/../.."))))
 415          (select? (delay (or (git-predicate (force repository-root))
 416                              source-file?))))
 417     (lambda ()
 418       "Return a package representing Guix built from the current source tree.
 419 This works by adding the current source tree to the store (after filtering it
 420 out) and returning a package that uses that as its 'source'."
 421       (or (current-guix-package)
 422           (package
 423             (inherit guix)
 424             (version (string-append (package-version guix) "+"))
 425             (source (local-file (force repository-root) "guix-current"
 426                                 #:recursive? #t
 427                                 #:select? (force select?))))))))
 428
 429 \f
 430 ;;;
 431 ;;; Other tools.
 432 ;;;
 433
 434 (define-public nix
 435   (package
 436     (name "nix")
 437     (version "2.0.4")
 438     (source (origin
 439              (method url-fetch)
 440              (uri (string-append "http://nixos.org/releases/nix/nix-"
 441                                  version "/nix-" version ".tar.xz"))
 442              (sha256
 443               (base32
 444                "0ss9svxlh1pvrdmnqjvjyqjmbqmrdbyfarvbb14i9d4bggzl0r8n"))))
 445     (build-system gnu-build-system)
 446     (native-inputs `(("pkg-config" ,pkg-config)))
 447     (inputs `(("curl" ,curl)
 448               ("bzip2" ,bzip2)
 449               ("libgc" ,libgc)
 450               ("libseccomp" ,libseccomp)
 451               ("libsodium" ,libsodium)
 452               ("openssl" ,openssl)
 453               ("sqlite" ,sqlite)
 454               ("xz" ,xz)))
 455     (home-page "https://nixos.org/nix/")
 456     (synopsis "The Nix package manager")
 457     (description
 458      "Nix is a purely functional package manager.  This means that it treats
 459 packages like values in purely functional programming languages such as
 460 Haskell—they are built by functions that don't have side-effects, and they
 461 never change after they have been built.  Nix stores packages in the Nix
 462 store, usually the directory /nix/store, where each package has its own unique
 463 sub-directory.")
 464     (license license:lgpl2.1+)))
 465
 466 (define-public stow
 467   (package
 468     (name "stow")
 469     (version "2.3.0")
 470     (source (origin
 471               (method url-fetch)
 472               (uri (string-append "mirror://gnu/stow/stow-"
 473                                   version ".tar.gz"))
 474               (sha256
 475                (base32
 476                 "0h8qr2rxsrkg6d8jxjk68r23jgn1dxdxyp4bnzzinpa8sjhfl905"))))
 477     (build-system gnu-build-system)
 478     (arguments
 479      '(#:phases
 480        (modify-phases %standard-phases
 481          (add-after 'install 'wrap-stow
 482            (lambda* (#:key inputs outputs #:allow-other-keys)
 483              (let ((out (assoc-ref outputs "out")))
 484                (wrap-program (string-append out "/bin/stow")
 485                  `("PERL5LIB" ":" prefix
 486                    ,(map (lambda (i) (string-append (assoc-ref inputs i)
 487                                                     "/lib/perl5/site_perl"))
 488                          '("perl-clone-choose" "perl-clone" "perl-hash-merge"))))
 489                #t))))))
 490     (inputs
 491      `(("perl" ,perl)
 492        ("perl-clone" ,perl-clone)
 493        ("perl-clone-choose" ,perl-clone-choose)
 494        ("perl-hash-merge" ,perl-hash-merge)))
 495     (native-inputs
 496      `(("perl-test-simple" ,perl-test-simple)
 497        ("perl-test-output" ,perl-test-output)
 498        ("perl-capture-tiny" ,perl-capture-tiny)
 499        ("perl-io-stringy" ,perl-io-stringy)))
 500     (home-page "https://www.gnu.org/software/stow/")
 501     (synopsis "Managing installed software packages")
 502     (description
 503      "GNU Stow is a symlink manager.  It generates symlinks to directories
 504 of data and makes them appear to be merged into the same directory.  It is
 505 typically used for managing software packages installed from source, by
 506 letting you install them apart in distinct directories and then create
 507 symlinks to the files in a common directory such as /usr/local.")
 508     (license license:gpl3+)))
 509
 510 (define-public rpm
 511   (package
 512     (name "rpm")
 513     (version "4.14.2.1")
 514     (source (origin
 515               (method url-fetch)
 516               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 517                                   (version-major+minor version) ".x/rpm-"
 518                                   version ".tar.bz2"))
 519               (sha256
 520                (base32
 521                 "1nmck2fq9h85fgs3zhh6w1avlw5y16cbz5khd459ry3jfd5w4f8i"))))
 522     (build-system gnu-build-system)
 523     (arguments
 524      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 525                            "--enable-python"
 526                            "--without-lua")
 527        #:phases (modify-phases %standard-phases
 528                   (add-before 'configure 'set-nss-library-path
 529                     (lambda* (#:key inputs #:allow-other-keys)
 530                       (let ((nss (assoc-ref inputs "nss")))
 531                         (setenv "LIBRARY_PATH"
 532                                 (string-append (getenv "LIBRARY_PATH") ":"
 533                                                nss "/lib/nss"))
 534                         #t))))))
 535     (native-inputs
 536      `(("pkg-config" ,pkg-config)))
 537     (inputs
 538      `(("python" ,python)
 539        ("xz" ,xz)
 540        ("bdb" ,bdb)
 541        ("popt" ,popt)
 542        ("nss" ,nss)
 543        ("nspr" ,nspr)
 544        ("libarchive" ,libarchive)
 545        ("nettle" ,nettle)            ;XXX: actually a dependency of libarchive
 546        ("file" ,file)
 547        ("bzip2" ,bzip2)
 548        ("zlib" ,zlib)
 549        ("cpio" ,cpio)))
 550     (home-page "https://rpm.org/")
 551     (synopsis "The RPM Package Manager")
 552     (description
 553      "The RPM Package Manager (RPM) is a command-line driven package
 554 management system capable of installing, uninstalling, verifying, querying,
 555 and updating computer software packages.  Each software package consists of an
 556 archive of files along with information about the package like its version, a
 557 description.  There is also a library permitting developers to manage such
 558 transactions from C or Python.")
 559
 560     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 561     (license license:gpl2+)))
 562
 563 (define-public diffoscope
 564   (package
 565     (name "diffoscope")
 566     (version "116")
 567     (source (origin
 568               (method git-fetch)
 569               (uri (git-reference
 570                     (url "https://salsa.debian.org/reproducible-builds/diffoscope.git")
 571                     (commit "116")))
 572               (file-name (git-file-name name version))
 573               (sha256
 574                (base32
 575                 "1anz2c112y0w21mh7xp6bs6z7v10dcy1i25nypkvqy3j929m0g28"))))
 576     (build-system python-build-system)
 577     (arguments
 578      `(#:phases (modify-phases %standard-phases
 579                   ;; setup.py mistakenly requires python-magic from PyPi, even
 580                   ;; though the Python bindings of `file` are sufficient.
 581                   ;; https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815844
 582                   (add-after 'unpack 'dependency-on-python-magic
 583                     (lambda _
 584                       (substitute* "setup.py"
 585                         (("'python-magic',") ""))))
 586                   ;; This test is broken because our `file` package has a
 587                   ;; bug in berkeley-db file type detection.
 588                   (add-after 'unpack 'remove-berkeley-test
 589                     (lambda _
 590                       (delete-file "tests/comparators/test_berkeley_db.py")
 591                       #t))
 592                   (add-after 'unpack 'embed-tool-references
 593                     (lambda* (#:key inputs #:allow-other-keys)
 594                       (substitute* "diffoscope/comparators/utils/compare.py"
 595                         (("\\['xxd',")
 596                          (string-append "['" (which "xxd") "',")))
 597                       (substitute* "diffoscope/comparators/elf.py"
 598                         (("@tool_required\\('readelf'\\)") "")
 599                         (("get_tool_name\\('readelf'\\)")
 600                          (string-append "'" (which "readelf") "'")))
 601                       (substitute* "diffoscope/comparators/directory.py"
 602                         (("@tool_required\\('stat'\\)") "")
 603                         (("@tool_required\\('getfacl'\\)") "")
 604                         (("\\['stat',")
 605                          (string-append "['" (which "stat") "',"))
 606                         (("\\['getfacl',")
 607                          (string-append "['" (which "getfacl") "',")))
 608                       #t))
 609                   (add-before 'check 'delete-failing-test
 610                     (lambda _
 611                       ;; this requires /sbin to be on the path
 612                       (delete-file "tests/test_tools.py")
 613                       #t)))))
 614     (inputs `(("rpm" ,rpm)                        ;for rpm-python
 615               ("python-file" ,python-file)
 616               ("python-debian" ,python-debian)
 617               ("python-libarchive-c" ,python-libarchive-c)
 618               ("python-tlsh" ,python-tlsh)
 619               ("acl" ,acl)                        ;for getfacl
 620               ("colordiff" ,colordiff)
 621               ("xxd" ,xxd)))
 622     ;; Below are modules used for tests.
 623     (native-inputs `(("python-pytest" ,python-pytest)
 624                      ("python-chardet" ,python-chardet)))
 625     (home-page "https://diffoscope.org/")
 626     (synopsis "Compare files, archives, and directories in depth")
 627     (description
 628      "Diffoscope tries to get to the bottom of what makes files or directories
 629 different.  It recursively unpacks archives of many kinds and transforms
 630 various binary formats into more human readable forms to compare them.  It can
 631 compare two tarballs, ISO images, or PDFs just as easily.")
 632     (license license:gpl3+)))
 633
 634 (define-public trydiffoscope
 635  (package
 636    (name "trydiffoscope")
 637    (version "67.0.1")
 638    (source
 639     (origin
 640       (method git-fetch)
 641       (uri (git-reference
 642             (url "https://salsa.debian.org/reproducible-builds/trydiffoscope.git")
 643             (commit version)))
 644       (file-name (git-file-name name version))
 645       (sha256
 646        (base32
 647         "03b66cjii7l2yiwffj6ym6mycd5drx7prfp4j2550281pias6mjh"))))
 648     (arguments
 649      `(#:phases
 650        (modify-phases %standard-phases
 651          (add-after 'install 'install-doc
 652            (lambda* (#:key outputs #:allow-other-keys)
 653              (let* ((share (string-append (assoc-ref outputs "out") "/share/")))
 654                (mkdir-p (string-append share "/man/man1/" ))
 655                (invoke "rst2man.py"
 656                        "trydiffoscope.1.rst"
 657                        (string-append share "/man/man1/trydiffoscope.1"))
 658                (mkdir-p (string-append share "/doc/" ,name "-" ,version))
 659                (install-file "./README.rst"
 660                           (string-append share "/doc/" ,name "-" ,version)))
 661              #t)))))
 662     (propagated-inputs
 663      `(("python-requests" ,python-requests)))
 664     (native-inputs
 665      `(("gzip" ,gzip)
 666        ("python-docutils" ,python-docutils)))
 667     (build-system python-build-system)
 668     (home-page "https://try.diffoscope.org")
 669     (synopsis "Client for remote diffoscope service")
 670     (description "This is a client for the @url{https://try.diffoscope.org,
 671 remote diffoscope service}.
 672
 673 Diffoscope tries to get to the bottom of what makes files or directories
 674 different.  It recursively unpacks archives of many kinds and transforms
 675 various binary formats into more human readable forms to compare them.  It can
 676 compare two tarballs, ISO images, or PDFs just as easily.
 677
 678 Results are displayed by default, stored as local text or html files, or made
 679 available via a URL on @url{https://try.diffoscope.org}.  Results stored on the
 680 server are purged after 30 days.")
 681     (license license:gpl3+)))
 682
 683 (define-public python-anaconda-client
 684   (package
 685     (name "python-anaconda-client")
 686     (version "1.6.3")
 687     (source
 688      (origin
 689        (method url-fetch)
 690        (uri (string-append "https://github.com/Anaconda-Platform/"
 691                            "anaconda-client/archive/" version ".tar.gz"))
 692        (file-name (string-append name "-" version ".tar.gz"))
 693        (sha256
 694         (base32
 695          "1wv4wi6k5jz7rlwfgvgfdizv77x3cr1wa2aj0k1595g7fbhkjhz2"))))
 696     (build-system python-build-system)
 697     (propagated-inputs
 698      `(("python-pyyaml" ,python-pyyaml)
 699        ("python-requests" ,python-requests)
 700        ("python-clyent" ,python-clyent)))
 701     (native-inputs
 702      `(("python-pytz" ,python-pytz)
 703        ("python-dateutil" ,python-dateutil)
 704        ("python-mock" ,python-mock)
 705        ("python-coverage" ,python-coverage)
 706        ("python-pillow" ,python-pillow)))
 707     (arguments
 708      `(#:phases
 709        (modify-phases %standard-phases
 710          ;; This is needed for some tests.
 711          (add-before 'check 'set-up-home
 712            (lambda* _ (setenv "HOME" "/tmp") #t))
 713          (add-before 'check 'remove-network-tests
 714            (lambda* _
 715              ;; Remove tests requiring a network connection
 716              (let ((network-tests '("tests/test_upload.py"
 717                                     "tests/test_authorizations.py"
 718                                     "tests/test_login.py"
 719                                     "tests/test_whoami.py"
 720                                     "utils/notebook/tests/test_data_uri.py"
 721                                     "utils/notebook/tests/test_base.py"
 722                                     "utils/notebook/tests/test_downloader.py"
 723                                     "inspect_package/tests/test_conda.py")))
 724                (with-directory-excursion "binstar_client"
 725                  (for-each delete-file network-tests)))
 726              #t)))))
 727     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 728     (synopsis "Anaconda Cloud command line client library")
 729     (description
 730      "Anaconda Cloud command line client library provides an interface to
 731 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 732 environments.")
 733     (license license:bsd-3)))
 734
 735 (define-public python2-anaconda-client
 736   (package-with-python2 python-anaconda-client))
 737
 738 (define-public python-conda
 739   (package
 740     (name "python-conda")
 741     (version "4.3.16")
 742     (source
 743      (origin
 744        (method url-fetch)
 745        (uri (string-append "https://github.com/conda/conda/archive/"
 746                            version ".tar.gz"))
 747        (file-name (string-append name "-" version ".tar.gz"))
 748        (sha256
 749         (base32
 750          "1jq8hyrc5npb5sf4vw6s6by4602yj8f79vzpbwdfgpkn02nfk1dv"))))
 751     (build-system python-build-system)
 752     (arguments
 753      `(#:phases
 754        (modify-phases %standard-phases
 755          (add-before 'build 'create-version-file
 756            (lambda _
 757              (with-output-to-file "conda/.version"
 758                (lambda () (display ,version)))
 759              #t))
 760          (add-before 'check 'remove-failing-tests
 761            (lambda _
 762              ;; These tests require internet/network access
 763              (let ((network-tests '("test_cli.py"
 764                                     "test_create.py"
 765                                     "test_export.py"
 766                                     "test_fetch.py"
 767                                     "test_history.py"
 768                                     "test_info.py"
 769                                     "test_install.py"
 770                                     "test_priority.py"
 771                                     "conda_env/test_cli.py"
 772                                     "conda_env/test_create.py"
 773                                     "conda_env/specs/test_notebook.py"
 774                                     "conda_env/utils/test_notebooks.py"
 775                                     "core/test_index.py"
 776                                     "core/test_repodata.py")))
 777                (with-directory-excursion "tests"
 778                  (for-each delete-file network-tests)
 779
 780                  ;; FIXME: This test creates a file, then deletes it and tests
 781                  ;; that the file was deleted.  For some reason it fails when
 782                  ;; building with guix, but does not when you run it in the
 783                  ;; directory left when you build with the --keep-failed
 784                  ;; option
 785                  (delete-file "gateways/disk/test_delete.py")
 786                  #t))))
 787          (replace 'check
 788            (lambda _
 789              (setenv "HOME" "/tmp")
 790              (invoke "py.test"))))))
 791     (native-inputs
 792      `(("python-cytoolz" ,python-cytoolz)
 793        ("python-ruamel.yaml" ,python-ruamel.yaml)
 794        ("python-requests" ,python-requests)
 795        ("python-pycosat" ,python-pycosat)
 796        ("python-pytest" ,python-pytest)
 797        ("python-responses" ,python-responses)
 798        ("python-pyyaml" ,python-pyyaml)
 799        ("python-anaconda-client" ,python-anaconda-client)))
 800     (home-page "https://github.com/conda/conda")
 801     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 802     (description
 803      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 804 is the package manager used by Anaconda installations, but it may be used for
 805 other systems as well.  Conda makes environments first-class citizens, making
 806 it easy to create independent environments even for C libraries.  Conda is
 807 written entirely in Python.
 808
 809 This package provides Conda as a library.")
 810     (license license:bsd-3)))
 811
 812 (define-public python2-conda
 813   (let ((base (package-with-python2
 814                (strip-python2-variant python-conda))))
 815     (package (inherit base)
 816              (native-inputs
 817               `(("python2-enum34" ,python2-enum34)
 818                 ,@(package-native-inputs base))))))
 819
 820 (define-public conda
 821   (package (inherit python-conda)
 822     (name "conda")
 823     (arguments
 824      (substitute-keyword-arguments (package-arguments python-conda)
 825        ((#:phases phases)
 826         `(modify-phases ,phases
 827            (replace 'build
 828              (lambda* (#:key outputs #:allow-other-keys)
 829                ;; This test fails when run before installation.
 830                (delete-file "tests/test_activate.py")
 831
 832                ;; Fix broken defaults
 833                (substitute* "conda/base/context.py"
 834                  (("return sys.prefix")
 835                   (string-append "return \"" (assoc-ref outputs "out") "\""))
 836                  (("return (prefix_is_writable\\(self.root_prefix\\))" _ match)
 837                   (string-append "return False if self.root_prefix == self.conda_prefix else "
 838                                  match)))
 839
 840                ;; The util/setup-testing.py is used to build conda in
 841                ;; application form, rather than the default, library form.
 842                ;; With this, we are able to run commands like `conda --help`
 843                ;; directly on the command line
 844                (invoke "python" "utils/setup-testing.py" "build_py")))
 845            (replace 'install
 846              (lambda* (#:key inputs outputs #:allow-other-keys)
 847                (let* ((out (assoc-ref outputs "out"))
 848                       (target (string-append out "/lib/python"
 849                                              ((@@ (guix build python-build-system)
 850                                                   get-python-version)
 851                                               (assoc-ref inputs "python"))
 852                                              "/site-packages/")))
 853                  ;; The installer aborts if the target directory is not on
 854                  ;; PYTHONPATH.
 855                  (setenv "PYTHONPATH"
 856                          (string-append target ":" (getenv "PYTHONPATH")))
 857
 858                  ;; And it aborts if the directory doesn't exist.
 859                  (mkdir-p target)
 860                  (invoke "python" "utils/setup-testing.py" "install"
 861                          (string-append "--prefix=" out)))))
 862            ;; The "activate" and "deactivate" scripts don't need wrapping.
 863            ;; They also break when they are renamed.
 864            (add-after 'wrap 'undo-wrap
 865              (lambda* (#:key outputs #:allow-other-keys)
 866                (with-directory-excursion (string-append (assoc-ref outputs "out") "/bin/")
 867                  (delete-file "deactivate")
 868                  (rename-file ".deactivate-real" "deactivate")
 869                  (delete-file "activate")
 870                  (rename-file ".activate-real" "activate")
 871                  #t)))))))
 872     (description
 873      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 874 is the package manager used by Anaconda installations, but it may be used for
 875 other systems as well.  Conda makes environments first-class citizens, making
 876 it easy to create independent environments even for C libraries.  Conda is
 877 written entirely in Python.")))
 878
 879 (define-public gwl
 880   (package
 881     (name "gwl")
 882     (version "0.1.1")
 883     (source (origin
 884               (method url-fetch)
 885               (uri (string-append "https://www.guixwl.org/releases/gwl-"
 886                                   version ".tar.gz"))
 887               (sha256
 888                (base32
 889                 "06pm967mq1wyggx7l0nfapw5s0k5qc5r9lawk2v3db868br779a7"))))
 890     (build-system gnu-build-system)
 891     (native-inputs
 892      `(("autoconf" ,autoconf)
 893        ("automake" ,automake)
 894        ("pkg-config" ,pkg-config)))
 895     (inputs
 896      `(("guile" ,guile-2.2)))
 897     (propagated-inputs
 898      `(("guix" ,guix)
 899        ("guile-commonmark" ,guile-commonmark)))
 900     (home-page "https://www.guixwl.org")
 901     (synopsis "Workflow management extension for GNU Guix")
 902     (description "This project provides two subcommands to GNU Guix and
 903 introduces two record types that provide a workflow management extension built
 904 on top of GNU Guix.")
 905     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 906     ;; the web interface modules in gwl/ are licensed AGPL3+,
 907     ;; and the fonts included in this package are licensed OFL1.1.
 908     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 909
 910 (define-public gcab
 911   (package
 912     (name "gcab")
 913     (version "1.2")
 914     (source (origin
 915               (method url-fetch)
 916               (uri (string-append "mirror://gnome/sources/gcab/"
 917                                   version "/gcab-" version ".tar.xz"))
 918               (sha256
 919                (base32
 920                 "038h5kk41si2hc9d9169rrlvp8xgsxq27kri7hv2vr39gvz9cbas"))))
 921     (build-system meson-build-system)
 922     (native-inputs
 923      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
 924        ("intltool" ,intltool)
 925        ("pkg-config" ,pkg-config)
 926        ("vala" ,vala)))
 927     (inputs
 928      `(("glib" ,glib)
 929        ("zlib" ,zlib)))
 930     (arguments
 931      `(#:configure-flags
 932        ;; XXX This ‘documentation’ is for developers, and fails informatively:
 933        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
 934        (list "-Ddocs=false"
 935              "-Dintrospection=false")))
 936     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
 937     (synopsis "Microsoft Cabinet file manipulation library")
 938     (description
 939      "The libgcab library provides GObject functions to read, write, and modify
 940 Microsoft cabinet (.@dfn{CAB}) files.")
 941     (license (list license:gpl2+        ; tests/testsuite.at
 942                    license:lgpl2.1+)))) ; the rest
 943
 944 (define-public msitools
 945   (package
 946     (name "msitools")
 947     (version "0.99")
 948     (source (origin
 949               (method url-fetch)
 950               (uri (string-append "mirror://gnome/sources/msitools/"
 951                                   version "/msitools-" version ".tar.xz"))
 952               (sha256
 953                (base32
 954                 "0d9nidn5zc81bc30w119933rn2g87mrsqyqkndg20srkbsd96xfl"))))
 955     (build-system gnu-build-system)
 956     (native-inputs
 957      `(("bison" ,bison)
 958        ("pkg-config" ,pkg-config)))
 959     (inputs
 960      `(("gcab" ,gcab)
 961        ("glib" ,glib)
 962        ("libgsf" ,libgsf)
 963        ("libxml2" ,libxml2)
 964        ("uuid" ,util-linux)))
 965     (home-page "https://wiki.gnome.org/msitools")
 966     (synopsis "Windows Installer file manipulation tool")
 967     (description
 968      "msitools is a collection of command-line tools to inspect, extract, build,
 969 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
 970 for packaging and deployment of cross-compiled Windows applications.")
 971     (license license:lgpl2.1+)))
 972
 973 (define-public libostree
 974   (package
 975     (name "libostree")
 976     (version "2018.9.1")
 977     (source (origin
 978               (method url-fetch)
 979               (uri (string-append
 980                     "https://github.com/ostreedev/ostree/releases/download/v"
 981                     (version-major+minor version) "/libostree-" version ".tar.xz"))
 982               (sha256
 983                (base32
 984                 "01mygpkbl9sk2vr3hjbpih6qlg8lwx0q5lklm09f7jfwfpnwyqzj"))))
 985     (build-system gnu-build-system)
 986     (arguments
 987      '(#:phases
 988        (modify-phases %standard-phases
 989          (add-before 'check 'pre-check
 990            (lambda _
 991              ;; Don't try to use the non-existing '/var/tmp' as test
 992              ;; directory.
 993              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
 994              #t)))
 995        ;; XXX: fails with:
 996        ;;     tap-driver.sh: internal error getting exit status
 997        ;;     tap-driver.sh: fatal: I/O or internal error
 998        #:tests? #f))
 999     (native-inputs
1000      `(("attr" ,attr)                   ; for tests
1001        ("bison" ,bison)
1002        ("glib:bin" ,glib "bin")          ; for 'glib-mkenums'
1003        ("gobject-introspection" ,gobject-introspection)
1004        ("pkg-config" ,pkg-config)
1005        ("xsltproc" ,libxslt)))
1006     (inputs
1007      `(("avahi" ,avahi)
1008        ("docbook-xml" ,docbook-xml-4.2)
1009        ("docbook-xsl" ,docbook-xsl)
1010        ("e2fsprogs" ,e2fsprogs)
1011        ("fuse" ,fuse)
1012        ("glib" ,glib)
1013        ("gpgme" ,gpgme)
1014        ("libarchive" ,libarchive)
1015        ("libsoup" ,libsoup)
1016        ("nettle" ,nettle)               ; required by 'libarchive.la'
1017        ("util-linux" ,util-linux)))
1018     (home-page "https://ostree.readthedocs.io/en/latest/")
1019     (synopsis "Operating system and container binary deployment and upgrades")
1020     (description
1021      "@code{libostree} is both a shared library and suite of command line
1022 tools that combines a \"git-like\" model for committing and downloading
1023 bootable file system trees, along with a layer for deploying them and managing
1024 the boot loader configuration.")
1025     (license license:lgpl2.0+)))
1026
1027 (define-public flatpak
1028   (package
1029    (name "flatpak")
1030    (version "1.4.2")
1031    (source
1032     (origin
1033      (method url-fetch)
1034      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1035                          version "/flatpak-" version ".tar.xz"))
1036      (sha256
1037       (base32
1038        "08nmpp26mgv0vp3mlwk97rnp0j7i108h4hr9nllja19sjxnrlygj"))))
1039
1040    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1041    ;; find the TLS backend in glib-networking.
1042    (build-system glib-or-gtk-build-system)
1043
1044    (arguments
1045     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
1046       #:configure-flags (list
1047                          "--enable-documentation=no" ;; FIXME
1048                          "--enable-system-helper=no"
1049                          "--localstatedir=/var"
1050                          (string-append "--with-system-bubblewrap="
1051                                         (assoc-ref %build-inputs "bubblewrap")
1052                                         "/bin/bwrap"))))
1053    (native-inputs `(("bison" ,bison)
1054                     ("gettext" ,gnu-gettext)
1055                     ("glib:bin" ,glib "bin") ; for glib-mkenums + gdbus-codegen
1056                     ("gobject-introspection" ,gobject-introspection)
1057                     ("libcap" ,libcap)
1058                     ("pkg-config" ,pkg-config)))
1059    (propagated-inputs `(("glib-networking" ,glib-networking)
1060                         ("gnupg" ,gnupg)
1061                         ("gsettings-desktop-schemas"
1062                          ,gsettings-desktop-schemas)))
1063    (inputs `(("appstream-glib" ,appstream-glib)
1064              ("bubblewrap" ,bubblewrap)
1065              ("dconf" ,dconf)
1066              ("fuse" ,fuse)
1067              ("gdk-pixbuf" ,gdk-pixbuf)
1068              ("gpgme" ,gpgme)
1069              ("json-glib" ,json-glib)
1070              ("libarchive" ,libarchive)
1071              ("libostree" ,libostree)
1072              ("libseccomp" ,libseccomp)
1073              ("libsoup" ,libsoup)
1074              ("libxau" ,libxau)
1075              ("libxml2" ,libxml2)
1076              ("nettle" ,nettle)
1077              ("util-linux" ,util-linux)))
1078    (home-page "https://flatpak.org")
1079    (synopsis "System for building, distributing, and running sandboxed desktop
1080 applications")
1081    (description "Flatpak is a system for building, distributing, and running
1082 sandboxed desktop applications on GNU/Linux.")
1083    (license license:lgpl2.1+)))