gnu/packages/parallel.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014 Eric Bavier <bavier@member.fsf.org>
   3 ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
   4 ;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
   5 ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
   6 ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
   7 ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
   8 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
   9 ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
  10 ;;;
  11 ;;; This file is part of GNU Guix.
  12 ;;;
  13 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  14 ;;; under the terms of the GNU General Public License as published by
  15 ;;; the Free Software Foundation; either version 3 of the License, or (at
  16 ;;; your option) any later version.
  17 ;;;
  18 ;;; GNU Guix is distributed in the hope that it will be useful, but
  19 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  20 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  21 ;;; GNU General Public License for more details.
  22 ;;;
  23 ;;; You should have received a copy of the GNU General Public License
  24 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  25
  26 (define-module (gnu packages parallel)
  27   #:use-module (guix build-system gnu)
  28   #:use-module (guix download)
  29   #:use-module ((guix licenses) #:prefix license:)
  30   #:use-module (guix packages)
  31   #:use-module (gnu packages)
  32   #:use-module (gnu packages admin)
  33   #:use-module (gnu packages autotools)
  34   #:use-module (gnu packages base)
  35   #:use-module (gnu packages freeipmi)
  36   #:use-module (gnu packages linux)
  37   #:use-module (gnu packages mpi)
  38   #:use-module (gnu packages perl)
  39   #:use-module (gnu packages pkg-config)
  40   #:use-module (gnu packages python)
  41   #:use-module (gnu packages readline)
  42   #:use-module (gnu packages tcl)
  43   #:use-module (gnu packages tls)
  44   #:use-module (gnu packages web))
  45
  46 (define-public parallel
  47   (package
  48     (name "parallel")
  49     (version "20171122")
  50     (source
  51      (origin
  52       (method url-fetch)
  53       (uri (string-append "mirror://gnu/parallel/parallel-"
  54                           version ".tar.bz2"))
  55       (sha256
  56        (base32
  57         "19l2r8zzh8jyb76r3ksfq9y3r8fg07xw31h0dq1d7jpf73fnmd21"))))
  58     (build-system gnu-build-system)
  59     (arguments
  60      `(#:phases
  61        (modify-phases %standard-phases
  62          (add-after 'unpack 'patch-bin-sh
  63            (lambda _
  64              (for-each
  65               (lambda (file)
  66                 (substitute* file
  67                   ;; Patch hard coded '/bin/sh' in the lin ending in:
  68                   ;; $Global::shell = $ENV{'PARALLEL_SHELL'} ||
  69                   ;;  parent_shell($$) || $ENV{'SHELL'} || "/bin/sh";
  70                   (("/bin/sh\\\";\n$") (string-append (which "sh") "\";\n"))
  71                   ;; Patch call to 'ps' and 'perl' commands.
  72                   ((" ps ") (string-append " " (which "ps") " "))
  73                   ((" perl -") (string-append " " (which "perl") " -"))))
  74               (list "src/parallel" "src/sem"))
  75              #t))
  76          (add-after 'install 'post-install-test
  77            (lambda* (#:key outputs #:allow-other-keys)
  78              (zero? (system* (string-append
  79                               (assoc-ref outputs "out") "/bin/parallel")
  80                              "echo"
  81                              ":::" "1" "2" "3")))))))
  82     (inputs
  83      `(("perl" ,perl)
  84        ("procps" ,procps)))
  85     (home-page "https://www.gnu.org/software/parallel/")
  86     (synopsis "Build and execute command lines in parallel")
  87     (description
  88      "GNU Parallel is a tool for executing shell jobs in parallel using one
  89 or more computers.  Jobs can consist of single commands or of scripts
  90 and they are executed on lists of files, hosts, users or other items.")
  91     (license license:gpl3+)))
  92
  93 (define-public slurm
  94   (package
  95    (name "slurm")
  96    (version "16.05.11")
  97    (source (origin
  98             (method url-fetch)
  99             (uri (string-append
 100                   "https://download.schedmd.com/slurm/slurm-"
 101                   version ".tar.bz2"))
 102             (sha256
 103              (base32
 104               "0c63mvh13wsp6jlydaz98v35iwg53mk94ynpx9dqn2z4gl53k5y7"))
 105             (patches (search-patches
 106                       "slurm-configure-remove-nonfree-contribs.patch"))
 107             (modules '((guix build utils)))
 108             (snippet
 109              '(begin
 110                 (delete-file-recursively "contribs")
 111                 #t))))
 112    ;; FIXME: More optional inputs could be added,
 113    ;; in particular mysql and gtk+.
 114    (inputs `(("expect" ,expect)
 115              ("freeipmi" ,freeipmi)
 116              ("hwloc" ,hwloc "lib")
 117              ("json-c" ,json-c)
 118              ("linux-pam" , linux-pam)
 119              ("munge" ,munge)
 120              ("numactl" ,numactl)
 121              ("openssl" ,openssl)
 122              ("perl" ,perl)
 123              ("python" ,python-wrapper)
 124              ("readline" ,readline)))
 125    (native-inputs
 126     `(("autoconf" ,autoconf)
 127       ("pkg-config" ,pkg-config)))
 128    (build-system gnu-build-system)
 129    (arguments
 130     `(#:configure-flags
 131       (list "--enable-pam"
 132             (string-append "--with-freeipmi=" (assoc-ref %build-inputs "freeipmi"))
 133             (string-append "--with-hwloc=" (assoc-ref %build-inputs "hwloc"))
 134             (string-append "--with-json=" (assoc-ref %build-inputs "json-c"))
 135             (string-append "--with-munge=" (assoc-ref %build-inputs "munge"))
 136             (string-append "--with-ssl=" (assoc-ref %build-inputs "openssl")))
 137       #:phases
 138       (modify-phases %standard-phases
 139         (add-after 'unpack 'autogen
 140           (lambda _ (zero? (system* "autoconf"))))))) ; configure.ac was patched
 141    (home-page "http://slurm.schedmd.com/")
 142    (synopsis "Workload manager for cluster computing")
 143    (description
 144     "SLURM is a fault-tolerant and highly scalable cluster management and job
 145 scheduling system for large and small clusters.  It allocates access to
 146 resources (computer nodes) to users for some duration of time, provides a
 147 framework for starting, executing, and monitoring work (typically a parallel
 148 job) on a set of allocated nodes, and arbitrates contention for resources
 149 by managing a queue of pending work.")
 150    (license license:gpl2+)))
 151
 152 (define-public slurm-drmaa
 153   (package
 154     (name "slurm-drmaa")
 155     (version "1.0.7")
 156     (source (origin
 157               (method url-fetch)
 158               (uri "http://apps.man.poznan.pl/trac/slurm-drmaa/downloads/9")
 159               (file-name (string-append name "-" version ".tar.gz"))
 160               (sha256
 161                (base32
 162                 "0grw55hmny2mc4nc0y1arnvxd2k0dcdfn476kzs180fibjxgfw14"))))
 163     (build-system gnu-build-system)
 164     (inputs
 165      `(("slurm" ,slurm)))
 166     (native-inputs
 167      `(("which" ,which)))
 168     (home-page "http://apps.man.poznan.pl/trac/slurm-drmaa")
 169     (synopsis "Distributed resource management application API for SLURM")
 170     (description
 171      "PSNC DRMAA for Simple Linux Utility for Resource Management (SLURM) is
 172 an implementation of Open Grid Forum DRMAA 1.0 (Distributed Resource
 173 Management Application API) specification for submission and control of jobs
 174 to SLURM.  Using DRMAA, grid applications builders, portal developers and ISVs
 175 can use the same high-level API to link their software with different
 176 cluster/resource management systems.")
 177     (license license:gpl3+)))