gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018, 2019 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
  14 ;;;
  15 ;;; This file is part of GNU Guix.
  16 ;;;
  17 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  18 ;;; under the terms of the GNU General Public License as published by
  19 ;;; the Free Software Foundation; either version 3 of the License, or (at
  20 ;;; your option) any later version.
  21 ;;;
  22 ;;; GNU Guix is distributed in the hope that it will be useful, but
  23 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  24 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  25 ;;; GNU General Public License for more details.
  26 ;;;
  27 ;;; You should have received a copy of the GNU General Public License
  28 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  29
  30 (define-module (gnu packages package-management)
  31   #:use-module (gnu packages)
  32   #:use-module (gnu packages acl)
  33   #:use-module (gnu packages attr)
  34   #:use-module (gnu packages avahi)
  35   #:use-module (gnu packages autotools)
  36   #:use-module (gnu packages backup)
  37   #:use-module (gnu packages base)
  38   #:use-module (gnu packages bdw-gc)
  39   #:use-module (gnu packages bison)
  40   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  41   #:use-module (gnu packages check)
  42   #:use-module (gnu packages compression)
  43   #:use-module (gnu packages cpio)
  44   #:use-module (gnu packages crypto)
  45   #:use-module (gnu packages curl)
  46   #:use-module (gnu packages dbm)
  47   #:use-module (gnu packages docbook)
  48   #:use-module (gnu packages file)
  49   #:use-module (gnu packages gettext)
  50   #:use-module (gnu packages glib)
  51   #:use-module (gnu packages gnome)
  52   #:use-module (gnu packages gnupg)
  53   #:use-module (gnu packages graphviz)
  54   #:use-module (gnu packages gtk)
  55   #:use-module (gnu packages guile)
  56   #:use-module (gnu packages guile-xyz)
  57   #:use-module (gnu packages linux)
  58   #:use-module (gnu packages lisp)
  59   #:use-module (gnu packages man)
  60   #:use-module (gnu packages nettle)
  61   #:use-module (gnu packages nss)
  62   #:use-module (gnu packages patchutils)
  63   #:use-module (gnu packages perl)
  64   #:use-module (gnu packages perl-check)
  65   #:use-module (gnu packages pkg-config)
  66   #:use-module (gnu packages popt)
  67   #:use-module (gnu packages python)
  68   #:use-module (gnu packages python-web)
  69   #:use-module (gnu packages python-xyz)
  70   #:use-module (gnu packages serialization)
  71   #:use-module (gnu packages sqlite)
  72   #:use-module (gnu packages ssh)
  73   #:use-module (gnu packages texinfo)
  74   #:use-module (gnu packages time)
  75   #:use-module (gnu packages tls)
  76   #:use-module (gnu packages vim)
  77   #:use-module (gnu packages virtualization)
  78   #:use-module (gnu packages web)
  79   #:use-module (gnu packages xml)
  80   #:use-module (gnu packages xorg)
  81   #:use-module (guix build-system glib-or-gtk)
  82   #:use-module (guix build-system gnu)
  83   #:use-module (guix build-system meson)
  84   #:use-module (guix build-system python)
  85   #:use-module (guix download)
  86   #:use-module (guix gexp)
  87   #:use-module (guix git-download)
  88   #:use-module ((guix licenses) #:prefix license:)
  89   #:use-module (guix packages)
  90   #:use-module (guix utils)
  91   #:use-module (ice-9 match)
  92   #:use-module (srfi srfi-1))
  93
  94 (define (boot-guile-uri arch)
  95   "Return the URI for the bootstrap Guile tarball for ARCH."
  96   (cond ((string=? "armhf" arch)
  97          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  98                         arch "-linux"
  99                         "/20150101/guile-2.0.11.tar.xz"))
 100         ((string=? "aarch64" arch)
 101          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 102                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 103         (else
 104          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 105                         arch "-linux"
 106                         "/20131110/guile-2.0.9.tar.xz"))))
 107
 108 (define-public guix
 109   ;; Latest version of Guix, which may or may not correspond to a release.
 110   ;; Note: the 'update-guix-package.scm' script expects this definition to
 111   ;; start precisely like this.
 112   (let ((version "1.0.1")
 113         (commit "41b4b713f4892918a9a1950acdd89f33b977d143")
 114         (revision 10))
 115     (package
 116       (name "guix")
 117
 118       (version (if (zero? revision)
 119                    version
 120                    (string-append version "-"
 121                                   (number->string revision)
 122                                   "." (string-take commit 7))))
 123       (source (origin
 124                 (method git-fetch)
 125                 (uri (git-reference
 126                       (url "https://git.savannah.gnu.org/r/guix.git")
 127                       (commit commit)))
 128                 (sha256
 129                  (base32
 130                   "08sblj4xy78va6zlxmxdq2id58pjr8rjqxxycd77hiacsqbjh9g6"))
 131                 (file-name (string-append "guix-" version "-checkout"))))
 132       (build-system gnu-build-system)
 133       (arguments
 134        `(#:configure-flags (list
 135                             "--localstatedir=/var"
 136                             "--sysconfdir=/etc"
 137                             (string-append "--with-bash-completion-dir="
 138                                            (assoc-ref %outputs "out")
 139                                            "/etc/bash_completion.d")
 140
 141                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 142                             ;; we don't keep a reference to Graphviz, whose
 143                             ;; closure is pretty big (too big for the Guix
 144                             ;; system installation image.)
 145                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 146
 147                             ;; To avoid problems with the length of shebangs,
 148                             ;; choose a fixed-width and short directory name
 149                             ;; for tests.
 150                             "ac_cv_guix_test_root=/tmp/guix-tests")
 151          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 152
 153          #:modules ((guix build gnu-build-system)
 154                     (guix build utils)
 155                     (srfi srfi-26)
 156                     (ice-9 popen)
 157                     (ice-9 rdelim))
 158
 159          #:phases (modify-phases %standard-phases
 160                     (replace 'bootstrap
 161                       (lambda _
 162                         ;; Make sure 'msgmerge' can modify the PO files.
 163                         (for-each (lambda (po)
 164                                     (chmod po #o666))
 165                                   (find-files "." "\\.po$"))
 166
 167                         (patch-shebang "build-aux/git-version-gen")
 168
 169                         (call-with-output-file ".tarball-version"
 170                           (lambda (port)
 171                             (display ,version port)))
 172
 173                         (invoke "sh" "bootstrap")))
 174                     (add-before 'check 'copy-bootstrap-guile
 175                       (lambda* (#:key system inputs #:allow-other-keys)
 176                         ;; Copy the bootstrap guile tarball in the store used
 177                         ;; by the test suite.
 178                         (define (intern file recursive?)
 179                           (let ((base (strip-store-file-name file)))
 180                             ;; Note: don't use 'guix download' here because we
 181                             ;; need to set the 'recursive?' argument.
 182                             (invoke "./test-env" "guile" "-c"
 183                                     (object->string
 184                                      `(begin
 185                                         (use-modules (guix))
 186                                         (with-store store
 187                                           (add-to-store store ,base ,recursive?
 188                                                         "sha256" ,file)))))))
 189
 190                         (intern (assoc-ref inputs "boot-guile") #f)
 191
 192                         ;; On x86_64 some tests need the i686 Guile.
 193                         ,@(if (and (not (%current-target-system))
 194                                    (string=? (%current-system)
 195                                              "x86_64-linux"))
 196                               '((intern (assoc-ref inputs "boot-guile/i686") #f))
 197                               '())
 198
 199                         ;; Copy the bootstrap executables.
 200                         (for-each (lambda (input)
 201                                     (intern (assoc-ref inputs input) #t))
 202                                   '("bootstrap/bash" "bootstrap/mkdir"
 203                                     "bootstrap/tar" "bootstrap/xz"))
 204                         #t))
 205                     (add-after 'unpack 'disable-failing-tests
 206                       ;; XXX FIXME: These tests fail within the build container.
 207                       (lambda _
 208                         (substitute* "tests/syscalls.scm"
 209                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 210                            (string-append "(test-skip 1)\n" all)))
 211                         (substitute* "tests/containers.scm"
 212                           (("^\\(test-(assert|equal)" all)
 213                            (string-append "(test-skip 1)\n" all)))
 214                         (when (file-exists? "tests/guix-environment-container.sh")
 215                           (substitute* "tests/guix-environment-container.sh"
 216                             (("guix environment --version")
 217                              "exit 77\n")))
 218                         #t))
 219                     (add-before 'check 'set-SHELL
 220                       (lambda _
 221                         ;; 'guix environment' tests rely on 'SHELL' having a
 222                         ;; correct value, so set it.
 223                         (setenv "SHELL" (which "sh"))
 224                         #t))
 225                     (add-after 'install 'wrap-program
 226                       (lambda* (#:key inputs outputs #:allow-other-keys)
 227                         ;; Make sure the 'guix' command finds GnuTLS,
 228                         ;; Guile-JSON, and Guile-Git automatically.
 229                         (let* ((out    (assoc-ref outputs "out"))
 230                                (guile  (assoc-ref inputs "guile"))
 231                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 232                                (json   (assoc-ref inputs "guile-json"))
 233                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 234                                (git    (assoc-ref inputs "guile-git"))
 235                                (bs     (assoc-ref inputs
 236                                                   "guile-bytestructures"))
 237                                (ssh    (assoc-ref inputs "guile-ssh"))
 238                                (gnutls (assoc-ref inputs "gnutls"))
 239                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 240                                (deps   (list gcrypt json sqlite gnutls
 241                                              git bs ssh))
 242                                (effective
 243                                 (read-line
 244                                  (open-pipe* OPEN_READ
 245                                              (string-append guile "/bin/guile")
 246                                              "-c" "(display (effective-version))")))
 247                                (path   (string-join
 248                                         (map (cut string-append <>
 249                                                   "/share/guile/site/"
 250                                                   effective)
 251                                              (delete #f deps))
 252                                         ":"))
 253                                (gopath (string-join
 254                                         (map (cut string-append <>
 255                                                   "/lib/guile/" effective
 256                                                   "/site-ccache")
 257                                              (delete #f deps))
 258                                         ":"))
 259                                (locpath (string-append locales "/lib/locale")))
 260
 261                           (wrap-program (string-append out "/bin/guix")
 262                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 263                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 264                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 265
 266                           #t))))))
 267       (native-inputs `(("pkg-config" ,pkg-config)
 268
 269                        ;; XXX: Keep the development inputs here even though
 270                        ;; they're unnecessary, just so that 'guix environment
 271                        ;; guix' always contains them.
 272                        ("autoconf" ,autoconf-wrapper)
 273                        ("automake" ,automake)
 274                        ("gettext" ,gettext-minimal)
 275                        ("texinfo" ,texinfo)
 276                        ("graphviz" ,graphviz)
 277                        ("help2man" ,help2man)
 278                        ("po4a" ,po4a)))
 279       (inputs
 280        `(("bzip2" ,bzip2)
 281          ("gzip" ,gzip)
 282          ("zlib" ,zlib)              ;for 'guix publish'
 283          ("lzlib" ,lzlib)            ;for 'guix publish' and 'guix substitute'
 284
 285          ("sqlite" ,sqlite)
 286          ("libgcrypt" ,libgcrypt)
 287
 288          ("guile" ,guile-2.2)
 289
 290          ;; Some of the tests use "unshare" when it is available.
 291          ("util-linux" ,util-linux)
 292
 293          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 294          ;; have it here.
 295          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 296          ,@(if (and (not (%current-target-system))
 297                     (string=? (%current-system) "x86_64-linux"))
 298                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 299                '())
 300
 301          ;; Tests also rely on these bootstrap executables.
 302          ("bootstrap/bash" ,(bootstrap-executable "bash" (%current-system)))
 303          ("bootstrap/mkdir" ,(bootstrap-executable "mkdir" (%current-system)))
 304          ("bootstrap/tar" ,(bootstrap-executable "tar" (%current-system)))
 305          ("bootstrap/xz" ,(bootstrap-executable "xz" (%current-system)))
 306
 307          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 308       (propagated-inputs
 309        `(("gnutls" ,gnutls)
 310          ("guile-gcrypt" ,guile-gcrypt)
 311          ("guile-json" ,guile-json-3)
 312          ("guile-sqlite3" ,guile-sqlite3)
 313          ("guile-ssh" ,guile-ssh)
 314          ("guile-git" ,guile-git)))
 315
 316       (home-page "https://www.gnu.org/software/guix/")
 317       (synopsis "Functional package manager for installed software packages and versions")
 318       (description
 319        "GNU Guix is a functional package manager for the GNU system, and is
 320 also a distribution thereof.  It includes a virtual machine image.  Besides
 321 the usual package management features, it also supports transactional
 322 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 323 the Nix package manager.")
 324       (license license:gpl3+)
 325       (properties '((ftp-server . "alpha.gnu.org"))))))
 326
 327 (define-public guix-daemon
 328   ;; This package is for internal consumption: it allows us to quickly build
 329   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 330   ;; pull'.
 331   (package
 332     (inherit guix)
 333     (properties `((hidden? . #t)))
 334     (name "guix-daemon")
 335
 336     ;; Use a minimum set of dependencies.
 337     (native-inputs
 338      (fold alist-delete (package-native-inputs guix)
 339            '("po4a" "graphviz" "help2man")))
 340     (inputs
 341      `(("gnutls" ,gnutls)
 342        ("guile-git" ,guile-git)
 343        ("guile-json" ,guile-json-3)
 344        ("guile-gcrypt" ,guile-gcrypt)
 345        ,@(fold alist-delete (package-inputs guix)
 346                '("boot-guile" "boot-guile/i686" "util-linux"))))
 347
 348     (propagated-inputs '())
 349
 350     (arguments
 351      (substitute-keyword-arguments (package-arguments guix)
 352        ((#:configure-flags flags '())
 353         ;; Pretend we have those libraries; we don't actually need them.
 354         `(append ,flags
 355                  '("guix_cv_have_recent_guile_sqlite3=yes"
 356                    "guix_cv_have_recent_guile_ssh=yes")))
 357        ((#:tests? #f #f)
 358         #f)
 359        ((#:phases phases '%standard-phases)
 360         `(modify-phases ,phases
 361            (add-after 'unpack 'change-default-guix
 362              (lambda _
 363                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 364                ;; Here we use a questionable hack where we hard-code root's
 365                ;; current guix, which could be wrong (XXX).  Note that scripts
 366                ;; like 'guix perform-download' do not run as root so we assume
 367                ;; that they have access to /var/guix/profiles/per-user/root.
 368                (substitute* "nix/libstore/globals.cc"
 369                  (("guixProgram = (.*)nixBinDir + \"/guix\"" _ before)
 370                   (string-append "guixProgram = " before
 371                                  "/var/guix/profiles/per-user/root\
 372 /current-guix/bin/guix")))
 373                #t))
 374            (replace 'build
 375              (lambda _
 376                (invoke "make" "nix/libstore/schema.sql.hh")
 377                (invoke "make" "-j" (number->string
 378                                     (parallel-job-count))
 379                        "guix-daemon")))
 380            (delete 'copy-bootstrap-guile)
 381            (replace 'install
 382              (lambda* (#:key outputs #:allow-other-keys)
 383                (invoke "make" "install-binPROGRAMS")))
 384            (delete 'wrap-program)))))))
 385
 386 (define-public guile2.0-guix
 387   (deprecated-package "guile2.0-guix" guix))
 388
 389 (define-public guix-minimal
 390   ;; A version of Guix which is built with the minimal set of dependencies, as
 391   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 392   ;; marked as hidden.
 393   (hidden-package
 394    (package
 395      (inherit guix)
 396      (name "guix-minimal")
 397      (inputs
 398       `(("guile" ,guile-2.2)
 399         ,@(alist-delete "guile" (package-inputs guix))))
 400      (propagated-inputs
 401       (fold alist-delete
 402             (package-propagated-inputs guix)
 403             '("guile-ssh"))))))
 404
 405 (define (source-file? file stat)
 406   "Return true if FILE is likely a source file, false if it is a typical
 407 generated file."
 408   (define (wrong-extension? file)
 409     (or (string-suffix? "~" file)
 410         (member (file-extension file)
 411                 '("o" "a" "lo" "so" "go"))))
 412
 413   (match (basename file)
 414     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 415      #f)
 416     ((? wrong-extension?)
 417      #f)
 418     (_
 419      #t)))
 420
 421 (define-public current-guix-package
 422   ;; This parameter allows callers to override the package that 'current-guix'
 423   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 424   ;; for instance because it's not running from a source code checkout.
 425   (make-parameter #f))
 426
 427 (define-public current-guix
 428   (let* ((repository-root (delay (canonicalize-path
 429                                   (string-append (current-source-directory)
 430                                                  "/../.."))))
 431          (select? (delay (or (git-predicate (force repository-root))
 432                              source-file?))))
 433     (lambda ()
 434       "Return a package representing Guix built from the current source tree.
 435 This works by adding the current source tree to the store (after filtering it
 436 out) and returning a package that uses that as its 'source'."
 437       (or (current-guix-package)
 438           (package
 439             (inherit guix)
 440             (version (string-append (package-version guix) "+"))
 441             (source (local-file (force repository-root) "guix-current"
 442                                 #:recursive? #t
 443                                 #:select? (force select?))))))))
 444
 445 \f
 446 ;;;
 447 ;;; Other tools.
 448 ;;;
 449
 450 (define-public nix
 451   (package
 452     (name "nix")
 453     (version "2.0.4")
 454     (source (origin
 455              (method url-fetch)
 456              (uri (string-append "http://nixos.org/releases/nix/nix-"
 457                                  version "/nix-" version ".tar.xz"))
 458              (sha256
 459               (base32
 460                "0ss9svxlh1pvrdmnqjvjyqjmbqmrdbyfarvbb14i9d4bggzl0r8n"))))
 461     (build-system gnu-build-system)
 462     (native-inputs `(("pkg-config" ,pkg-config)))
 463     (inputs `(("curl" ,curl)
 464               ("bzip2" ,bzip2)
 465               ("libgc" ,libgc)
 466               ("libseccomp" ,libseccomp)
 467               ("libsodium" ,libsodium)
 468               ("openssl" ,openssl)
 469               ("sqlite" ,sqlite)
 470               ("xz" ,xz)))
 471     (home-page "https://nixos.org/nix/")
 472     (synopsis "The Nix package manager")
 473     (description
 474      "Nix is a purely functional package manager.  This means that it treats
 475 packages like values in purely functional programming languages such as
 476 Haskell—they are built by functions that don't have side-effects, and they
 477 never change after they have been built.  Nix stores packages in the Nix
 478 store, usually the directory /nix/store, where each package has its own unique
 479 sub-directory.")
 480     (license license:lgpl2.1+)))
 481
 482 (define-public stow
 483   (package
 484     (name "stow")
 485     (version "2.3.1")
 486     (source (origin
 487               (method url-fetch)
 488               (uri (string-append "mirror://gnu/stow/stow-"
 489                                   version ".tar.gz"))
 490               (sha256
 491                (base32
 492                 "0jrxy12ywn7smdzdnvwzjw77l6knx6jkj2rckgykg1dpf6bdkm89"))))
 493     (build-system gnu-build-system)
 494     (inputs
 495      `(("perl" ,perl)))
 496     (native-inputs
 497      `(("perl-test-simple" ,perl-test-simple)
 498        ("perl-test-output" ,perl-test-output)
 499        ("perl-capture-tiny" ,perl-capture-tiny)
 500        ("perl-io-stringy" ,perl-io-stringy)))
 501     (home-page "https://www.gnu.org/software/stow/")
 502     (synopsis "Managing installed software packages")
 503     (description
 504      "GNU Stow is a symlink manager.  It generates symlinks to directories
 505 of data and makes them appear to be merged into the same directory.  It is
 506 typically used for managing software packages installed from source, by
 507 letting you install them apart in distinct directories and then create
 508 symlinks to the files in a common directory such as /usr/local.")
 509     (license license:gpl3+)))
 510
 511 (define-public rpm
 512   (package
 513     (name "rpm")
 514     (version "4.14.2.1")
 515     (source (origin
 516               (method url-fetch)
 517               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 518                                   (version-major+minor version) ".x/rpm-"
 519                                   version ".tar.bz2"))
 520               (sha256
 521                (base32
 522                 "1nmck2fq9h85fgs3zhh6w1avlw5y16cbz5khd459ry3jfd5w4f8i"))))
 523     (build-system gnu-build-system)
 524     (arguments
 525      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 526                            "--enable-python"
 527                            "--without-lua")
 528        #:phases (modify-phases %standard-phases
 529                   (add-before 'configure 'set-nss-library-path
 530                     (lambda* (#:key inputs #:allow-other-keys)
 531                       (let ((nss (assoc-ref inputs "nss")))
 532                         (setenv "LIBRARY_PATH"
 533                                 (string-append (getenv "LIBRARY_PATH") ":"
 534                                                nss "/lib/nss"))
 535                         #t))))))
 536     (native-inputs
 537      `(("pkg-config" ,pkg-config)))
 538     (inputs
 539      `(("python" ,python)
 540        ("xz" ,xz)
 541        ("bdb" ,bdb)
 542        ("popt" ,popt)
 543        ("nss" ,nss)
 544        ("nspr" ,nspr)
 545        ("libarchive" ,libarchive)
 546        ("file" ,file)
 547        ("bzip2" ,bzip2)
 548        ("zlib" ,zlib)
 549        ("cpio" ,cpio)))
 550     (home-page "https://rpm.org/")
 551     (synopsis "The RPM Package Manager")
 552     (description
 553      "The RPM Package Manager (RPM) is a command-line driven package
 554 management system capable of installing, uninstalling, verifying, querying,
 555 and updating computer software packages.  Each software package consists of an
 556 archive of files along with information about the package like its version, a
 557 description.  There is also a library permitting developers to manage such
 558 transactions from C or Python.")
 559
 560     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 561     (license license:gpl2+)))
 562
 563 (define-public python-anaconda-client
 564   (package
 565     (name "python-anaconda-client")
 566     (version "1.6.3")
 567     (source
 568      (origin
 569        (method url-fetch)
 570        (uri (string-append "https://github.com/Anaconda-Platform/"
 571                            "anaconda-client/archive/" version ".tar.gz"))
 572        (file-name (string-append name "-" version ".tar.gz"))
 573        (sha256
 574         (base32
 575          "1wv4wi6k5jz7rlwfgvgfdizv77x3cr1wa2aj0k1595g7fbhkjhz2"))))
 576     (build-system python-build-system)
 577     (propagated-inputs
 578      `(("python-pyyaml" ,python-pyyaml)
 579        ("python-requests" ,python-requests)
 580        ("python-clyent" ,python-clyent)))
 581     (native-inputs
 582      `(("python-pytz" ,python-pytz)
 583        ("python-dateutil" ,python-dateutil)
 584        ("python-mock" ,python-mock)
 585        ("python-coverage" ,python-coverage)
 586        ("python-pillow" ,python-pillow)))
 587     (arguments
 588      `(#:phases
 589        (modify-phases %standard-phases
 590          ;; This is needed for some tests.
 591          (add-before 'check 'set-up-home
 592            (lambda* _ (setenv "HOME" "/tmp") #t))
 593          (add-before 'check 'remove-network-tests
 594            (lambda* _
 595              ;; Remove tests requiring a network connection
 596              (let ((network-tests '("tests/test_upload.py"
 597                                     "tests/test_authorizations.py"
 598                                     "tests/test_login.py"
 599                                     "tests/test_whoami.py"
 600                                     "utils/notebook/tests/test_data_uri.py"
 601                                     "utils/notebook/tests/test_base.py"
 602                                     "utils/notebook/tests/test_downloader.py"
 603                                     "inspect_package/tests/test_conda.py")))
 604                (with-directory-excursion "binstar_client"
 605                  (for-each delete-file network-tests)))
 606              #t)))))
 607     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 608     (synopsis "Anaconda Cloud command line client library")
 609     (description
 610      "Anaconda Cloud command line client library provides an interface to
 611 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 612 environments.")
 613     (license license:bsd-3)))
 614
 615 (define-public python2-anaconda-client
 616   (package-with-python2 python-anaconda-client))
 617
 618 (define-public python-conda
 619   (package
 620     (name "python-conda")
 621     (version "4.3.16")
 622     (source
 623      (origin
 624        (method url-fetch)
 625        (uri (string-append "https://github.com/conda/conda/archive/"
 626                            version ".tar.gz"))
 627        (file-name (string-append name "-" version ".tar.gz"))
 628        (sha256
 629         (base32
 630          "1jq8hyrc5npb5sf4vw6s6by4602yj8f79vzpbwdfgpkn02nfk1dv"))))
 631     (build-system python-build-system)
 632     (arguments
 633      `(#:phases
 634        (modify-phases %standard-phases
 635          (add-before 'build 'create-version-file
 636            (lambda _
 637              (with-output-to-file "conda/.version"
 638                (lambda () (display ,version)))
 639              #t))
 640          (add-before 'check 'remove-failing-tests
 641            (lambda _
 642              ;; These tests require internet/network access
 643              (let ((network-tests '("test_cli.py"
 644                                     "test_create.py"
 645                                     "test_export.py"
 646                                     "test_fetch.py"
 647                                     "test_history.py"
 648                                     "test_info.py"
 649                                     "test_install.py"
 650                                     "test_priority.py"
 651                                     "conda_env/test_cli.py"
 652                                     "conda_env/test_create.py"
 653                                     "conda_env/specs/test_notebook.py"
 654                                     "conda_env/utils/test_notebooks.py"
 655                                     "core/test_index.py"
 656                                     "core/test_repodata.py")))
 657                (with-directory-excursion "tests"
 658                  (for-each delete-file network-tests)
 659
 660                  ;; FIXME: This test creates a file, then deletes it and tests
 661                  ;; that the file was deleted.  For some reason it fails when
 662                  ;; building with guix, but does not when you run it in the
 663                  ;; directory left when you build with the --keep-failed
 664                  ;; option
 665                  (delete-file "gateways/disk/test_delete.py")
 666                  #t))))
 667          (replace 'check
 668            (lambda _
 669              (setenv "HOME" "/tmp")
 670              (invoke "py.test"))))))
 671     (native-inputs
 672      `(("python-cytoolz" ,python-cytoolz)
 673        ("python-ruamel.yaml" ,python-ruamel.yaml)
 674        ("python-requests" ,python-requests)
 675        ("python-pycosat" ,python-pycosat)
 676        ("python-pytest" ,python-pytest)
 677        ("python-responses" ,python-responses)
 678        ("python-pyyaml" ,python-pyyaml)
 679        ("python-anaconda-client" ,python-anaconda-client)))
 680     (home-page "https://github.com/conda/conda")
 681     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 682     (description
 683      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 684 is the package manager used by Anaconda installations, but it may be used for
 685 other systems as well.  Conda makes environments first-class citizens, making
 686 it easy to create independent environments even for C libraries.  Conda is
 687 written entirely in Python.
 688
 689 This package provides Conda as a library.")
 690     (license license:bsd-3)))
 691
 692 (define-public python2-conda
 693   (let ((base (package-with-python2
 694                (strip-python2-variant python-conda))))
 695     (package (inherit base)
 696              (native-inputs
 697               `(("python2-enum34" ,python2-enum34)
 698                 ,@(package-native-inputs base))))))
 699
 700 (define-public conda
 701   (package (inherit python-conda)
 702     (name "conda")
 703     (arguments
 704      (substitute-keyword-arguments (package-arguments python-conda)
 705        ((#:phases phases)
 706         `(modify-phases ,phases
 707            (replace 'build
 708              (lambda* (#:key outputs #:allow-other-keys)
 709                ;; This test fails when run before installation.
 710                (delete-file "tests/test_activate.py")
 711
 712                ;; Fix broken defaults
 713                (substitute* "conda/base/context.py"
 714                  (("return sys.prefix")
 715                   (string-append "return \"" (assoc-ref outputs "out") "\""))
 716                  (("return (prefix_is_writable\\(self.root_prefix\\))" _ match)
 717                   (string-append "return False if self.root_prefix == self.conda_prefix else "
 718                                  match)))
 719
 720                ;; The util/setup-testing.py is used to build conda in
 721                ;; application form, rather than the default, library form.
 722                ;; With this, we are able to run commands like `conda --help`
 723                ;; directly on the command line
 724                (invoke "python" "utils/setup-testing.py" "build_py")))
 725            (replace 'install
 726              (lambda* (#:key inputs outputs #:allow-other-keys)
 727                (let* ((out (assoc-ref outputs "out"))
 728                       (target (string-append out "/lib/python"
 729                                              (python-version
 730                                               (assoc-ref inputs "python"))
 731                                              "/site-packages/")))
 732                  ;; The installer aborts if the target directory is not on
 733                  ;; PYTHONPATH.
 734                  (setenv "PYTHONPATH"
 735                          (string-append target ":" (getenv "PYTHONPATH")))
 736
 737                  ;; And it aborts if the directory doesn't exist.
 738                  (mkdir-p target)
 739                  (invoke "python" "utils/setup-testing.py" "install"
 740                          (string-append "--prefix=" out)))))
 741            ;; The "activate" and "deactivate" scripts don't need wrapping.
 742            ;; They also break when they are renamed.
 743            (add-after 'wrap 'undo-wrap
 744              (lambda* (#:key outputs #:allow-other-keys)
 745                (with-directory-excursion (string-append (assoc-ref outputs "out") "/bin/")
 746                  (delete-file "deactivate")
 747                  (rename-file ".deactivate-real" "deactivate")
 748                  (delete-file "activate")
 749                  (rename-file ".activate-real" "activate")
 750                  #t)))))))
 751     (description
 752      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 753 is the package manager used by Anaconda installations, but it may be used for
 754 other systems as well.  Conda makes environments first-class citizens, making
 755 it easy to create independent environments even for C libraries.  Conda is
 756 written entirely in Python.")))
 757
 758 (define-public gwl
 759   (package
 760     (name "gwl")
 761     (version "0.1.1")
 762     (source (origin
 763               (method url-fetch)
 764               (uri (string-append "https://www.guixwl.org/releases/gwl-"
 765                                   version ".tar.gz"))
 766               (sha256
 767                (base32
 768                 "06pm967mq1wyggx7l0nfapw5s0k5qc5r9lawk2v3db868br779a7"))))
 769     (build-system gnu-build-system)
 770     (native-inputs
 771      `(("autoconf" ,autoconf)
 772        ("automake" ,automake)
 773        ("pkg-config" ,pkg-config)))
 774     (inputs
 775      `(("guile" ,guile-2.2)))
 776     (propagated-inputs
 777      `(("guix" ,guix)
 778        ("guile-commonmark" ,guile-commonmark)))
 779     (home-page "https://www.guixwl.org")
 780     (synopsis "Workflow management extension for GNU Guix")
 781     (description "This project provides two subcommands to GNU Guix and
 782 introduces two record types that provide a workflow management extension built
 783 on top of GNU Guix.")
 784     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 785     ;; the web interface modules in gwl/ are licensed AGPL3+,
 786     ;; and the fonts included in this package are licensed OFL1.1.
 787     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 788
 789 (define-public guix-jupyter
 790   (package
 791     (name "guix-jupyter")
 792     (version "0.1.0")
 793     (home-page "https://gitlab.inria.fr/guix-hpc/guix-kernel")
 794     (source (origin
 795               (method git-fetch)
 796               (uri (git-reference (url home-page)
 797                                   (commit (string-append "v" version))))
 798               (sha256
 799                (base32
 800                 "01z7jjkc7r7lj6637rcgpz40v8xqqyfp6871h94yvcnwm7zy9h1n"))
 801               (file-name (string-append "guix-jupyter-" version "-checkout"))))
 802     (build-system gnu-build-system)
 803     (arguments
 804      `(#:modules ((srfi srfi-26)
 805                   (ice-9 match)
 806                   (ice-9 popen)
 807                   (ice-9 rdelim)
 808                   (guix build utils)
 809                   (guix build gnu-build-system))
 810        #:phases
 811        (modify-phases %standard-phases
 812          (add-after 'install 'sed-kernel-json
 813            (lambda* (#:key inputs outputs #:allow-other-keys)
 814              (let* ((out   (assoc-ref outputs "out"))
 815                     (guix  (assoc-ref inputs  "guix"))
 816                     (guile (assoc-ref inputs  "guile"))
 817                     (json  (assoc-ref inputs  "guile-json"))
 818                     (git   (assoc-ref inputs  "guile-git"))
 819                     (bs    (assoc-ref inputs  "guile-bytestructures"))
 820                     (s-zmq (assoc-ref inputs  "guile-simple-zmq"))
 821                     (gcrypt (assoc-ref inputs  "guile-gcrypt"))
 822                     (deps  (list out s-zmq guix json git bs gcrypt))
 823                     (effective
 824                      (read-line
 825                       (open-pipe* OPEN_READ
 826                                   (string-append guile "/bin/guile")
 827                                   "-c" "(display (effective-version))")))
 828                     (path (map (cut string-append "-L\", \"" <>
 829                                     "/share/guile/site/"
 830                                     effective)
 831                                deps))
 832                     (gopath (map (cut string-append "-C\", \"" <>
 833                                       "/lib/guile/" effective
 834                                       "/site-ccache")
 835                                  deps))
 836                     (kernel-dir (string-append out "/share/jupyter/kernels/guix/")))
 837                (substitute* (string-append kernel-dir "kernel.json")
 838                  (("-s")
 839                   (string-join
 840                    (list (string-join path "\",\n\t\t\"")
 841                          (string-join gopath "\",\n\t\t\"")
 842                          "-s")
 843                    "\",\n\t\t\""))
 844                  (("guix-jupyter-kernel.scm")
 845                   (string-append out "/share/guile/site/2.2/"
 846                                  "guix-jupyter-kernel.scm")))
 847                #t))))))
 848     (native-inputs
 849      `(("autoconf" ,autoconf)
 850        ("automake" ,automake)
 851        ("pkg-config" ,pkg-config)
 852
 853        ;; For testing.
 854        ("jupyter" ,jupyter)
 855        ("python-ipython" ,python-ipython)
 856        ("python-ipykernel" ,python-ipykernel)))
 857     (inputs
 858      `(("guix" ,guix)
 859        ("guile" ,guile-2.2)))
 860     (propagated-inputs
 861      `(("guile-json" ,guile-json-3)
 862        ("guile-simple-zmq" ,guile-simple-zmq)
 863        ("guile-gcrypt" ,guile-gcrypt)))
 864     (synopsis "Guix kernel for Jupyter")
 865     (description
 866      "Guix-Jupyter is a Jupyter kernel.  It allows you to annotate notebooks
 867 with information about their software dependencies, such that code is executed
 868 in the right software environment.  Guix-Jupyter spawns the actual kernels
 869 such as @code{python-ipykernel} on behalf of the notebook user and runs them
 870 in an isolated environment, in separate namespaces.")
 871     (license license:gpl3+)))
 872
 873 (define-public gcab
 874   (package
 875     (name "gcab")
 876     (version "1.2")
 877     (source (origin
 878               (method url-fetch)
 879               (uri (string-append "mirror://gnome/sources/gcab/"
 880                                   version "/gcab-" version ".tar.xz"))
 881               (sha256
 882                (base32
 883                 "038h5kk41si2hc9d9169rrlvp8xgsxq27kri7hv2vr39gvz9cbas"))))
 884     (build-system meson-build-system)
 885     (native-inputs
 886      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
 887        ("intltool" ,intltool)
 888        ("pkg-config" ,pkg-config)
 889        ("vala" ,vala)))
 890     (inputs
 891      `(("glib" ,glib)
 892        ("zlib" ,zlib)))
 893     (arguments
 894      `(#:configure-flags
 895        ;; XXX This ‘documentation’ is for developers, and fails informatively:
 896        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
 897        (list "-Ddocs=false"
 898              "-Dintrospection=false")))
 899     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
 900     (synopsis "Microsoft Cabinet file manipulation library")
 901     (description
 902      "The libgcab library provides GObject functions to read, write, and modify
 903 Microsoft cabinet (.@dfn{CAB}) files.")
 904     (license (list license:gpl2+        ; tests/testsuite.at
 905                    license:lgpl2.1+)))) ; the rest
 906
 907 (define-public msitools
 908   (package
 909     (name "msitools")
 910     (version "0.100")
 911     (source (origin
 912               (method url-fetch)
 913               (uri (string-append "mirror://gnome/sources/msitools/"
 914                                   version "/msitools-" version ".tar.xz"))
 915               (sha256
 916                (base32
 917                 "1skq17qr2ic4qr3779j49byfm8rncwbsq9rj1a33ncn2m7isdwdv"))))
 918     (build-system gnu-build-system)
 919     (native-inputs
 920      `(("bison" ,bison)
 921        ("pkg-config" ,pkg-config)))
 922     (inputs
 923      `(("gcab" ,gcab)
 924        ("glib" ,glib)
 925        ("libgsf" ,libgsf)
 926        ("libxml2" ,libxml2)
 927        ("uuid" ,util-linux)))
 928     (home-page "https://wiki.gnome.org/msitools")
 929     (synopsis "Windows Installer file manipulation tool")
 930     (description
 931      "msitools is a collection of command-line tools to inspect, extract, build,
 932 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
 933 for packaging and deployment of cross-compiled Windows applications.")
 934     (license license:lgpl2.1+)))
 935
 936 (define-public libostree
 937   (package
 938     (name "libostree")
 939     (version "2019.3")
 940     (source (origin
 941               (method url-fetch)
 942               (uri (string-append
 943                     "https://github.com/ostreedev/ostree/releases/download/v"
 944                     (version-major+minor version) "/libostree-" version ".tar.xz"))
 945               (sha256
 946                (base32
 947                 "1r07yqbc9iiq0lzv1pryppd35fv695ym8r040msbfc93pmiy77y0"))))
 948     (build-system gnu-build-system)
 949     (arguments
 950      '(#:phases
 951        (modify-phases %standard-phases
 952          (add-before 'check 'pre-check
 953            (lambda _
 954              ;; Don't try to use the non-existing '/var/tmp' as test
 955              ;; directory.
 956              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
 957              #t)))
 958        ;; XXX: fails with:
 959        ;;     tap-driver.sh: missing test plan
 960        ;;     tap-driver.sh: internal error getting exit status
 961        ;;     tap-driver.sh: fatal: I/O or internal error
 962        #:tests? #f))
 963     (native-inputs
 964      `(("attr" ,attr)                   ; for tests
 965        ("bison" ,bison)
 966        ("glib:bin" ,glib "bin")         ; for 'glib-mkenums'
 967        ("gobject-introspection" ,gobject-introspection)
 968        ("pkg-config" ,pkg-config)
 969        ("xsltproc" ,libxslt)))
 970     (inputs
 971      `(("avahi" ,avahi)
 972        ("docbook-xml" ,docbook-xml-4.2)
 973        ("docbook-xsl" ,docbook-xsl)
 974        ("e2fsprogs" ,e2fsprogs)
 975        ("fuse" ,fuse)
 976        ("glib" ,glib)
 977        ("gpgme" ,gpgme)
 978        ("libarchive" ,libarchive)
 979        ("libsoup" ,libsoup)
 980        ("util-linux" ,util-linux)))
 981     (home-page "https://ostree.readthedocs.io/en/latest/")
 982     (synopsis "Operating system and container binary deployment and upgrades")
 983     (description
 984      "@code{libostree} is both a shared library and suite of command line
 985 tools that combines a \"git-like\" model for committing and downloading
 986 bootable file system trees, along with a layer for deploying them and managing
 987 the boot loader configuration.")
 988     (license license:lgpl2.0+)))
 989
 990 (define-public flatpak
 991   (package
 992    (name "flatpak")
 993    (version "1.4.3")
 994    (source
 995     (origin
 996      (method url-fetch)
 997      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
 998                          version "/flatpak-" version ".tar.xz"))
 999      (sha256
1000       (base32
1001        "11bfxmv8pxlb5x0lb2rsl45615fzfvq5r6wldf0l6ab2ngryd7i7"))))
1002
1003    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1004    ;; find the TLS backend in glib-networking.
1005    (build-system glib-or-gtk-build-system)
1006
1007    (arguments
1008     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
1009       #:configure-flags (list
1010                          "--enable-documentation=no" ;; FIXME
1011                          "--enable-system-helper=no"
1012                          "--localstatedir=/var"
1013                          (string-append "--with-system-bubblewrap="
1014                                         (assoc-ref %build-inputs "bubblewrap")
1015                                         "/bin/bwrap"))))
1016    (native-inputs `(("bison" ,bison)
1017                     ("gettext" ,gnu-gettext)
1018                     ("glib:bin" ,glib "bin") ; for glib-mkenums + gdbus-codegen
1019                     ("gobject-introspection" ,gobject-introspection)
1020                     ("libcap" ,libcap)
1021                     ("pkg-config" ,pkg-config)))
1022    (propagated-inputs `(("glib-networking" ,glib-networking)
1023                         ("gnupg" ,gnupg)
1024                         ("gsettings-desktop-schemas"
1025                          ,gsettings-desktop-schemas)))
1026    (inputs `(("appstream-glib" ,appstream-glib)
1027              ("bubblewrap" ,bubblewrap)
1028              ("dconf" ,dconf)
1029              ("fuse" ,fuse)
1030              ("gdk-pixbuf" ,gdk-pixbuf)
1031              ("gpgme" ,gpgme)
1032              ("json-glib" ,json-glib)
1033              ("libarchive" ,libarchive)
1034              ("libostree" ,libostree)
1035              ("libseccomp" ,libseccomp)
1036              ("libsoup" ,libsoup)
1037              ("libxau" ,libxau)
1038              ("libxml2" ,libxml2)
1039              ("util-linux" ,util-linux)))
1040    (home-page "https://flatpak.org")
1041    (synopsis "System for building, distributing, and running sandboxed desktop
1042 applications")
1043    (description "Flatpak is a system for building, distributing, and running
1044 sandboxed desktop applications on GNU/Linux.")
1045    (license license:lgpl2.1+)))