gnu: All snippets report errors using exceptions, else return #t.
[jackhill/guix/guix.git] / gnu / packages / databases.scm
1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2018 Ludovic Courtès <ludo@gnu.org>
3 ;;; Copyright © 2012, 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
4 ;;; Copyright © 2013, 2017 Cyril Roelandt <tipecaml@gmail.com>
5 ;;; Copyright © 2014, 2016 David Thompson <davet@gnu.org>
6 ;;; Copyright © 2014, 2015, 2016, 2018 Mark H Weaver <mhw@netris.org>
7 ;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
8 ;;; Copyright © 2015, 2016 Sou Bunnbu <iyzsong@gmail.com>
9 ;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
10 ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
11 ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
12 ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
13 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
14 ;;; Copyright © 2016, 2017 ng0 <contact.ng0@cryptolab.net>
15 ;;; Copyright © 2016, 2017 Roel Janssen <roel@gnu.org>
16 ;;; Copyright © 2016 David Craven <david@craven.ch>
17 ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
18 ;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
19 ;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org>
20 ;;; Copyright © 2016, 2017, 2018 Marius Bakke <mbakke@fastmail.com>
21 ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
22 ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
23 ;;; Copyright © 2017 Jelle Licht <jlicht@fsfe.org>
24 ;;; Copyright © 2017 Adriano Peluso <catonano@gmail.com>
25 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
26 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
27 ;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com>
28 ;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com>
29 ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
30 ;;; Copyright © 2017 Pierre Langlois <pierre.langlois@gmx.com>
31 ;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
32 ;;; Copyright © 2017 Kristofer Buffington <kristoferbuffington@gmail.com>
33 ;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
34 ;;;
35 ;;; This file is part of GNU Guix.
36 ;;;
37 ;;; GNU Guix is free software; you can redistribute it and/or modify it
38 ;;; under the terms of the GNU General Public License as published by
39 ;;; the Free Software Foundation; either version 3 of the License, or (at
40 ;;; your option) any later version.
41 ;;;
42 ;;; GNU Guix is distributed in the hope that it will be useful, but
43 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
44 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
45 ;;; GNU General Public License for more details.
46 ;;;
47 ;;; You should have received a copy of the GNU General Public License
48 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
49
50 (define-module (gnu packages databases)
51 #:use-module (gnu packages)
52 #:use-module (gnu packages admin)
53 #:use-module (gnu packages algebra)
54 #:use-module (gnu packages autotools)
55 #:use-module (gnu packages avahi)
56 #:use-module (gnu packages base)
57 #:use-module (gnu packages bash)
58 #:use-module (gnu packages bison)
59 #:use-module (gnu packages boost)
60 #:use-module (gnu packages check)
61 #:use-module (gnu packages compression)
62 #:use-module (gnu packages crypto)
63 #:use-module (gnu packages curl)
64 #:use-module (gnu packages cyrus-sasl)
65 #:use-module (gnu packages emacs)
66 #:use-module (gnu packages gettext)
67 #:use-module (gnu packages glib)
68 #:use-module (gnu packages gnupg)
69 #:use-module (gnu packages guile)
70 #:use-module (gnu packages time)
71 #:use-module (gnu packages golang)
72 #:use-module (gnu packages jemalloc)
73 #:use-module (gnu packages language)
74 #:use-module (gnu packages libevent)
75 #:use-module (gnu packages linux)
76 #:use-module (gnu packages man)
77 #:use-module (gnu packages ncurses)
78 #:use-module (gnu packages parallel)
79 #:use-module (gnu packages pcre)
80 #:use-module (gnu packages perl)
81 #:use-module (gnu packages perl-check)
82 #:use-module (gnu packages pkg-config)
83 #:use-module (gnu packages popt)
84 #:use-module (gnu packages python)
85 #:use-module (gnu packages rdf)
86 #:use-module (gnu packages readline)
87 #:use-module (gnu packages ruby)
88 #:use-module (gnu packages serialization)
89 #:use-module (gnu packages statistics)
90 #:use-module (gnu packages tcl)
91 #:use-module (gnu packages terminals)
92 #:use-module (gnu packages textutils)
93 #:use-module (gnu packages tls)
94 #:use-module (gnu packages valgrind)
95 #:use-module (gnu packages xml)
96 #:use-module ((guix licenses) #:prefix license:)
97 #:use-module (guix packages)
98 #:use-module (guix download)
99 #:use-module (guix git-download)
100 #:use-module (guix build-system gnu)
101 #:use-module (guix build-system go)
102 #:use-module (guix build-system perl)
103 #:use-module (guix build-system python)
104 #:use-module (guix build-system ruby)
105 #:use-module (guix build-system cmake)
106 #:use-module (guix build-system r)
107 #:use-module (guix build-system scons)
108 #:use-module ((guix build utils) #:hide (which))
109 #:use-module (guix utils)
110 #:use-module (srfi srfi-1)
111 #:use-module (srfi srfi-26)
112 #:use-module (ice-9 match))
113
114 (define-public 4store
115 (package
116 (name "4store")
117 (version "1.1.6")
118 (source (origin
119 (method url-fetch)
120 (uri (string-append "https://github.com/4store/4store/archive/v"
121 version ".tar.gz"))
122 (file-name (string-append name "-" version ".tar.gz"))
123 (sha256
124 (base32 "004fmcf1w75zhc1x3zc6kc97j4jqn2v5nhk6yb3z3cpfrhzi9j50"))
125 (patches (list (search-patch "4store-fix-buildsystem.patch")))))
126 (build-system gnu-build-system)
127 (native-inputs
128 `(("perl" ,perl)
129 ("python" ,python-2)
130 ("autoconf" ,autoconf)
131 ("automake" ,automake)
132 ("gettext" ,gettext-minimal)
133 ("libtool" ,libtool)
134 ("pcre" ,pcre "bin") ;for 'pcre-config'
135 ("pkg-config" ,pkg-config)))
136 (inputs
137 `(("glib" ,glib)
138 ("rasqal" ,rasqal)
139 ("libxml2" ,libxml2)
140 ("raptor2" ,raptor2)
141 ("readline" ,readline)
142 ("avahi" ,avahi)
143 ("cyrus-sasl" ,cyrus-sasl)
144 ("openssl" ,openssl)
145 ("util-linux" ,util-linux)))
146 (arguments
147 `(#:phases
148 (modify-phases %standard-phases
149 (add-after 'unpack 'generate-configure
150 (lambda _
151 (zero? (system* "sh" "autogen.sh")))))))
152 ;; http://www.4store.org has been down for a while now.
153 (home-page "https://github.com/4store/4store")
154 (synopsis "Clustered RDF storage and query engine")
155 (description "4store is a RDF/SPARQL store written in C, supporting
156 either single machines or networked clusters.")
157 (license license:gpl3+)))
158
159 (define-public gdbm
160 (package
161 (name "gdbm")
162 (version "1.14.1")
163 (source (origin
164 (method url-fetch)
165 (uri (string-append "mirror://gnu/gdbm/gdbm-"
166 version ".tar.gz"))
167 (sha256
168 (base32
169 "0pxwz3jlwvglq2mrbxvrjgr8pa0aj73p3v9sxmdlj570zw0gzknd"))))
170 (arguments `(#:configure-flags '("--enable-libgdbm-compat")))
171 (build-system gnu-build-system)
172 (home-page "http://www.gnu.org.ua/software/gdbm")
173 (synopsis
174 "Hash library of database functions compatible with traditional dbm")
175 (description
176 "GDBM is a library for manipulating hashed databases. It is used to
177 store key/value pairs in a file in a manner similar to the Unix dbm library
178 and provides interfaces to the traditional file format.")
179 (license license:gpl3+)))
180
181 (define-public go-gopkg.in-mgo.v2
182 (package
183 (name "go-gopkg.in-mgo.v2")
184 (version "2016.08.01")
185 (source (origin
186 (method git-fetch)
187 (uri (git-reference
188 (url "https://github.com/go-mgo/mgo")
189 (commit (string-append "r" version))))
190 (file-name (git-file-name name version))
191 (sha256
192 (base32
193 "0rwbi1z63w43b0z9srm8m7iz1fdwx7bq7n2mz862d6liiaqa59jd"))))
194 (build-system go-build-system)
195 (arguments
196 `(#:import-path "gopkg.in/mgo.v2"
197 ;; TODO: The tests fail as MongoDB fails to start
198 ;; Error parsing command line: unrecognised option '--chunkSize'
199 #:tests? #f
200 #:phases
201 (modify-phases %standard-phases
202 (delete 'reset-gzip-timestamps)
203 (add-before 'check 'start-mongodb
204 (lambda* (#:key tests? #:allow-other-keys)
205 (or (not tests?)
206 (with-directory-excursion "src/gopkg.in/mgo.v2"
207 (invoke "make" "startdb")))))
208 (add-after 'check 'stop'mongodb
209 (lambda* (#:key tests? #:allow-other-keys)
210 (or (not tests?)
211 (with-directory-excursion "src/gopkg.in/mgo.v2"
212 (invoke "make" "stopdb"))))))))
213 (native-inputs
214 `(("go-gopkg.in-check.v1" ,go-gopkg.in-check.v1)
215 ("mongodb" ,mongodb)
216 ("daemontools" ,daemontools)))
217 (synopsis "@code{mgo} offers a rich MongoDB driver for Go.")
218 (description
219 "@code{mgo} (pronounced as mango) is a MongoDB driver for the Go language.
220 It implements a rich selection of features under a simple API following
221 standard Go idioms.")
222 (home-page "http://labix.org/mgo")
223 (license license:bsd-2)))
224
225 (define-public bdb
226 (package
227 (name "bdb")
228 (version "6.2.32")
229 (source (origin
230 (method url-fetch)
231 (uri (string-append "http://download.oracle.com/berkeley-db/db-"
232 version ".tar.gz"))
233 (sha256
234 (base32
235 "1yx8wzhch5wwh016nh0kfxvknjkafv6ybkqh6nh7lxx50jqf5id9"))))
236 (build-system gnu-build-system)
237 (outputs '("out" ; programs, libraries, headers
238 "doc")) ; 94 MiB of HTML docs
239 (arguments
240 '(#:tests? #f ; no check target available
241 #:disallowed-references ("doc")
242 #:phases
243 (modify-phases %standard-phases
244 (replace 'configure
245 (lambda* (#:key outputs #:allow-other-keys)
246 (let ((out (assoc-ref outputs "out"))
247 (doc (assoc-ref outputs "doc")))
248 ;; '--docdir' is not honored, so we need to patch.
249 (substitute* "dist/Makefile.in"
250 (("docdir[[:blank:]]*=.*")
251 (string-append "docdir = " doc "/share/doc/bdb")))
252
253 (zero?
254 (system* "./dist/configure"
255 (string-append "--prefix=" out)
256 (string-append "CONFIG_SHELL=" (which "bash"))
257 (string-append "SHELL=" (which "bash"))
258
259 ;; Remove 7 MiB of .a files.
260 "--disable-static"
261
262 ;; The compatibility mode is needed by some packages,
263 ;; notably iproute2.
264 "--enable-compat185"
265
266 ;; The following flag is needed so that the inclusion
267 ;; of db_cxx.h into C++ files works; it leads to
268 ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h.
269 "--enable-cxx"))))))))
270 (synopsis "Berkeley database")
271 (description
272 "Berkeley DB is an embeddable database allowing developers the choice of
273 SQL, Key/Value, XML/XQuery or Java Object storage for their data model.")
274 ;; Starting with version 6, BDB is distributed under AGPL3. Many individual
275 ;; files are covered by the 3-clause BSD license.
276 (license (list license:agpl3+ license:bsd-3))
277 (home-page
278 "http://www.oracle.com/us/products/database/berkeley-db/overview/index.html")))
279
280 (define-public bdb-5.3
281 (package (inherit bdb)
282 (name "bdb")
283 (version "5.3.28")
284 (license (license:non-copyleft "file://LICENSE"
285 "See LICENSE in the distribution."))
286 (source (origin
287 (method url-fetch)
288 (uri (string-append "http://download.oracle.com/berkeley-db/db-"
289 version ".tar.gz"))
290 (sha256
291 (base32
292 "0a1n5hbl7027fbz5lm0vp0zzfp1hmxnz14wx3zl9563h83br5ag0"))))
293 (arguments
294 `(#:tests? #f ; no check target available
295 #:disallowed-references ("doc")
296 #:phases
297 (modify-phases %standard-phases
298 (replace 'configure
299 (lambda* (#:key outputs #:allow-other-keys)
300 (let ((out (assoc-ref outputs "out"))
301 (doc (assoc-ref outputs "doc")))
302 ;; '--docdir' is not honored, so we need to patch.
303 (substitute* "dist/Makefile.in"
304 (("docdir[[:blank:]]*=.*")
305 (string-append "docdir = " doc "/share/doc/bdb")))
306
307 (zero?
308 (system* "./dist/configure"
309 (string-append "--prefix=" out)
310 (string-append "CONFIG_SHELL=" (which "bash"))
311 (string-append "SHELL=" (which "bash"))
312
313 ;; Bdb doesn't recognize aarch64 as an architecture.
314 ,@(if (string=? "aarch64-linux" (%current-system))
315 '("--build=aarch64-unknown-linux-gnu")
316 '())
317
318 ;; Remove 7 MiB of .a files.
319 "--disable-static"
320
321 ;; The compatibility mode is needed by some packages,
322 ;; notably iproute2.
323 "--enable-compat185"
324
325 ;; The following flag is needed so that the inclusion
326 ;; of db_cxx.h into C++ files works; it leads to
327 ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h.
328 "--enable-cxx"))))))))))
329
330 (define-public es-dump-restore
331 (package
332 (name "es-dump-restore")
333 (version "2.1.0")
334 (source
335 (origin
336 (method url-fetch)
337 (uri (rubygems-uri "es_dump_restore" version))
338 (sha256
339 (base32
340 "020yk7f1hw48clmf5501z3xv9shsdchyymcv0y2cci2c1xvr1mim"))))
341 (build-system ruby-build-system)
342 (arguments
343 '(#:tests? #f)) ;; No testsuite.
344 (propagated-inputs
345 `(("ruby-httpclient" ,ruby-httpclient)
346 ("ruby-multi-json" ,ruby-multi-json)
347 ("ruby-progress_bar" ,ruby-progress_bar)
348 ("ruby-rubyzip" ,ruby-rubyzip)
349 ("ruby-thor" ,ruby-thor)))
350 (synopsis "Utility for dumping and restoring ElasticSearch indexes")
351 (description
352 "This package provides a utility for dumping the contents of an
353 ElasticSearch index to a compressed file and restoring the dumpfile back to an
354 ElasticSearch server")
355 (home-page "https://github.com/patientslikeme/es_dump_restore")
356 (license license:expat)))
357
358 (define-public leveldb
359 (package
360 (name "leveldb")
361 (version "1.20")
362 (source (origin
363 (method url-fetch)
364 (uri (string-append "https://github.com/google/leveldb"
365 "/archive/v" version ".tar.gz"))
366 (file-name (string-append name "-" version ".tar.gz"))
367 (sha256
368 (base32
369 "0r36bcrj6b2afsp4aw1gjai3jbs1c7734pxpc1jz7hh9nasyiazm"))))
370 (build-system gnu-build-system)
371 (arguments
372 '(#:make-flags (list "CC=gcc")
373 #:phases
374 (modify-phases %standard-phases
375 (delete 'configure)
376 (replace 'install
377 ;; There is no install target, so we do it here.
378 (lambda* (#:key outputs #:allow-other-keys)
379 (let* ((out (assoc-ref outputs "out"))
380 (lib (string-append out "/lib"))
381 (include (string-append out "/include")))
382 (for-each (lambda (file)
383 (install-file file lib))
384 (find-files "out-shared" "^libleveldb\\.so.*$"))
385 (copy-recursively "include" include)
386 #t))))))
387 (inputs
388 `(("snappy" ,snappy)))
389 (home-page "http://leveldb.org/")
390 (synopsis "Fast key-value storage library")
391 (description
392 "LevelDB is a fast key-value storage library that provides an ordered
393 mapping from string keys to string values.")
394 (license license:bsd-3)))
395
396 (define-public memcached
397 (package
398 (name "memcached")
399 (version "1.5.6")
400 (source
401 (origin
402 (method url-fetch)
403 (uri (string-append
404 "https://memcached.org/files/memcached-" version ".tar.gz"))
405 (sha256
406 (base32
407 "00szy9d4szaixi260dcd4846zci04y0sd47ia2lzg0bxkn2ywxcn"))))
408 (build-system gnu-build-system)
409 (inputs
410 `(("libevent" ,libevent)
411 ("cyrus-sasl" ,cyrus-sasl)))
412 (home-page "https://memcached.org/")
413 (synopsis "In memory caching service")
414 (description "Memcached is a in memory key value store. It has a small
415 and generic API, and was originally intended for use with dynamic web
416 applications.")
417 (license license:bsd-3)))
418
419 (define-public mongodb
420 (package
421 (name "mongodb")
422 (version "3.4.10")
423 (source (origin
424 (method url-fetch)
425 (uri (string-append "https://github.com/mongodb/mongo/archive/r"
426 version ".tar.gz"))
427 (file-name (string-append name "-" version ".tar.gz"))
428 (sha256
429 (base32 "0676lvkljj7a5hdhv78dbykqnqrj9lbn9799mi84b8vbnzsq961r"))
430 (modules '((guix build utils)))
431 (snippet
432 '(begin
433 (for-each (lambda (dir)
434 (delete-file-recursively
435 (string-append "src/third_party/" dir)))
436 '("pcre-8.41" "scons-2.5.0" "snappy-1.1.3"
437 "valgrind-3.11.0" "wiredtiger"
438 "yaml-cpp-0.5.3" "zlib-1.2.8"))
439 #t))
440 (patches
441 (list
442 (search-patch "mongodb-support-unknown-linux-distributions.patch")))))
443 (build-system scons-build-system)
444 (inputs
445 `(("openssl" ,openssl)
446 ("pcre" ,pcre)
447 ,@(match (%current-system)
448 ((or "x86_64-linux" "aarch64-linux" "mips64el-linux")
449 `(("wiredtiger" ,wiredtiger)))
450 (_ `()))
451 ("yaml-cpp" ,yaml-cpp)
452 ("zlib" ,zlib)
453 ("snappy" ,snappy)))
454 (native-inputs
455 `(("valgrind" ,valgrind)
456 ("perl" ,perl)
457 ("python" ,python2-minimal)
458 ("python2-pymongo" ,python2-pymongo)
459 ("python2-pyyaml" ,python2-pyyaml)
460 ("tzdata" ,tzdata)))
461 (arguments
462 `(#:scons ,scons-python2
463 #:phases
464 (let ((common-options
465 `(;; "--use-system-tcmalloc" TODO: Missing gperftools
466 "--use-system-pcre"
467 ;; wiredtiger is 64-bit only
468 ,,(if (any (cute string-prefix? <> (or (%current-target-system)
469 (%current-system)))
470 '("i686-linux" "armhf-linux"))
471 ``"--wiredtiger=off"
472 ``"--use-system-wiredtiger")
473 ;; TODO
474 ;; build/opt/mongo/db/fts/unicode/string.o failed: Error 1
475 ;; --use-system-boost
476 "--use-system-snappy"
477 "--use-system-zlib"
478 "--use-system-valgrind"
479 ;; "--use-system-stemmer" TODO: Missing relevant package
480 "--use-system-yaml"
481 "--disable-warnings-as-errors"
482 ,(format #f "--jobs=~a" (parallel-job-count))
483 "--ssl")))
484 (modify-phases %standard-phases
485 (add-after 'unpack 'scons-propagate-environment
486 (lambda _
487 ;; Modify the SConstruct file to arrange for
488 ;; environment variables to be propagated.
489 (substitute* "SConstruct"
490 (("^env = Environment\\(")
491 "env = Environment(ENV=os.environ, "))
492 #t))
493 (add-after 'unpack 'create-version-file
494 (lambda _
495 (call-with-output-file "version.json"
496 (lambda (port)
497 (display ,(simple-format #f "{
498 \"version\": \"~A\"
499 }" version) port)))
500 #t))
501 (replace 'build
502 (lambda _
503 (zero? (apply system*
504 `("scons"
505 ,@common-options
506 "mongod" "mongo" "mongos")))))
507 (replace 'check
508 (lambda* (#:key tests? inputs #:allow-other-keys)
509 (setenv "TZDIR"
510 (string-append (assoc-ref inputs "tzdata")
511 "/share/zoneinfo"))
512 (or (not tests?)
513 ;; Note that with the tests, especially the unittests, the
514 ;; build can take up to ~45GB of space, as many tests are
515 ;; individual executable files, with some being hundreds of
516 ;; megabytes in size.
517 (begin
518 (apply
519 invoke `("scons" ,@common-options "dbtest" "unittests"))
520 (substitute* "build/unittests.txt"
521 ;; TODO: Don't run the async_stream_test, as it hangs
522 (("^build\\/opt\\/mongo\\/executor\\/async\\_stream\\_test\n$")
523 "")
524 ;; TODO: This test fails
525 ;; Expected 0UL != disks.size() (0 != 0) @src/mongo/util/procparser_test.cpp:476
526 (("^build\\/opt\\/mongo\\/util\\/procparser\\_test\n$")
527 ""))
528 (invoke "python" "buildscripts/resmoke.py"
529 "--suites=dbtest,unittests"
530 (format #f "--jobs=~a" (parallel-job-count)))))))
531 (replace 'install
532 (lambda _
533 (let ((bin (string-append (assoc-ref %outputs "out") "/bin")))
534 (install-file "mongod" bin)
535 (install-file "mongos" bin)
536 (install-file "mongo" bin))
537 #t))))))
538 (home-page "https://www.mongodb.org/")
539 (synopsis "High performance and high availability document database")
540 (description
541 "Mongo is a high-performance, high availability, schema-free
542 document-oriented database. A key goal of MongoDB is to bridge the gap
543 between key/value stores (which are fast and highly scalable) and traditional
544 RDBMS systems (which are deep in functionality).")
545 (license (list license:agpl3
546 ;; Some parts are licensed under the Apache License
547 license:asl2.0))))
548
549 (define-public mysql
550 (package
551 (name "mysql")
552 (version "5.7.21")
553 (source (origin
554 (method url-fetch)
555 (uri (list (string-append
556 "http://dev.mysql.com/get/Downloads/MySQL-"
557 (version-major+minor version) "/"
558 name "-" version ".tar.gz")
559 (string-append
560 "http://downloads.mysql.com/archives/get/file/"
561 name "-" version ".tar.gz")))
562 (sha256
563 (base32
564 "1dq9bgnajf7cq3mrjkwv6w5nwslhs26lkrw56i7w4fbsq9wm087s"))))
565 (build-system cmake-build-system)
566 (arguments
567 `(#:configure-flags
568 '("-DBUILD_CONFIG=mysql_release"
569 "-DWITH_SSL=system"
570 "-DWITH_ZLIB=system"
571 "-DDEFAULT_CHARSET=utf8"
572 "-DDEFAULT_COLLATION=utf8_general_ci"
573 "-DMYSQL_DATADIR=/var/lib/mysql"
574 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
575 "-DINSTALL_INFODIR=share/mysql/docs"
576 "-DINSTALL_MANDIR=share/man"
577 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
578 "-DINSTALL_SCRIPTDIR=bin"
579 "-DINSTALL_INCLUDEDIR=include/mysql"
580 "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
581 "-DINSTALL_SUPPORTFILESDIR=share/mysql"
582 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
583 "-DINSTALL_DOCDIR=share/mysql/docs"
584 "-DINSTALL_SHAREDIR=share/mysql"
585 ;; Get rid of test data.
586 "-DINSTALL_MYSQLTESTDIR="
587 "-DINSTALL_SQLBENCHDIR=")
588 #:phases (modify-phases %standard-phases
589 (add-after
590 'unpack 'patch-boost-version
591 (lambda _
592 ;; Mysql wants boost-1.59.0 specifically
593 (substitute* "cmake/boost.cmake"
594 (("59")
595 ,(match (string-split (package-version boost) #\.)
596 ((_ minor . _) minor))))))
597 (add-after
598 'install 'remove-extra-binaries
599 (lambda* (#:key outputs #:allow-other-keys)
600 (let ((out (assoc-ref outputs "out")))
601 ;; Remove the 3 *_embedded files, which weigh in at
602 ;; 14 MiB each.
603 (for-each delete-file
604 (find-files (string-append out "/bin")
605 "_embedded$"))
606 #t))))))
607 (native-inputs
608 `(("bison" ,bison)
609 ("perl" ,perl)))
610 (inputs
611 `(("boost" ,boost)
612 ("libaio" ,libaio)
613 ("ncurses" ,ncurses)
614 ("openssl" ,openssl)
615 ("zlib" ,zlib)))
616 (home-page "http://www.mysql.com/")
617 (synopsis "Fast, easy to use, and popular database")
618 (description
619 "MySQL is a fast, reliable, and easy to use relational database
620 management system that supports the standardized Structured Query
621 Language.")
622 (license license:gpl2)))
623
624 (define-public mariadb
625 (package
626 (name "mariadb")
627 (version "10.1.29")
628 (source (origin
629 (method url-fetch)
630 (uri (string-append "https://downloads.mariadb.org/f/"
631 name "-" version "/source/"
632 name "-" version ".tar.gz"))
633 (sha256
634 (base32
635 "1m3ya6c3snnsyscd0waklayqfv0vhws52iizv2j5masj5xhdbfvk"))))
636 (build-system cmake-build-system)
637 (arguments
638 '(#:configure-flags
639 '("-DBUILD_CONFIG=mysql_release"
640 ;; Linking with libarchive fails, like this:
641
642 ;; ld: /gnu/store/...-libarchive-3.2.2/lib/libarchive.a(archive_entry.o):
643 ;; relocation R_X86_64_32 against `.bss' can not be used when
644 ;; making a shared object; recompile with -fPIC
645
646 ;; For now, disable the features that that use libarchive (xtrabackup).
647 "-DWITH_LIBARCHIVE=OFF"
648
649 "-DDEFAULT_CHARSET=utf8"
650 "-DDEFAULT_COLLATION=utf8_general_ci"
651 "-DMYSQL_DATADIR=/var/lib/mysql"
652 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
653 "-DINSTALL_INFODIR=share/mysql/docs"
654 "-DINSTALL_MANDIR=share/man"
655 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
656 "-DINSTALL_SCRIPTDIR=bin"
657 "-DINSTALL_INCLUDEDIR=include/mysql"
658 "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
659 "-DINSTALL_SUPPORTFILESDIR=share/mysql/support-files"
660 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
661 "-DINSTALL_DOCDIR=share/mysql/docs"
662 "-DINSTALL_SHAREDIR=share/mysql")
663 #:phases
664 (modify-phases %standard-phases
665 (add-before
666 'configure 'pre-configure
667 (lambda _
668 (setenv "CONFIG_SHELL" (which "sh"))
669 #t))
670 (add-after
671 'install 'post-install
672 (lambda* (#:key outputs #:allow-other-keys)
673 (let* ((out (assoc-ref outputs "out"))
674 (test (assoc-ref outputs "test")))
675 (substitute* (string-append out "/bin/mysql_install_db")
676 (("basedir=\"\"")
677 (string-append "basedir=\"" out "\"")))
678 ;; Remove unneeded files for testing.
679 (with-directory-excursion out
680 (for-each delete-file-recursively
681 '("data" "mysql-test" "sql-bench"
682 "share/man/man1/mysql-test-run.pl.1")))))))))
683 (native-inputs
684 `(("bison" ,bison)
685 ("perl" ,perl)))
686 (inputs
687 `(("jemalloc" ,jemalloc)
688 ("libaio" ,libaio)
689 ("libxml2" ,libxml2)
690 ("ncurses" ,ncurses)
691 ("openssl" ,openssl)
692 ("pcre" ,pcre)
693 ("zlib" ,zlib)))
694 (home-page "https://mariadb.org/")
695 (synopsis "SQL database server")
696 (description
697 "MariaDB is a multi-user and multi-threaded SQL database server, designed
698 as a drop-in replacement of MySQL.")
699 (license license:gpl2)))
700
701 (define-public postgresql
702 (package
703 (name "postgresql")
704 (version "10.3")
705 (source (origin
706 (method url-fetch)
707 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
708 version "/postgresql-" version ".tar.bz2"))
709 (sha256
710 (base32
711 "06lkcwsf851z49zqcws5yc77s2yrbaazf2nvbk38hpp31rw6i8kf"))))
712 (build-system gnu-build-system)
713 (arguments
714 `(#:configure-flags '("--with-uuid=e2fs")
715 #:phases
716 (modify-phases %standard-phases
717 (add-before 'configure 'patch-/bin/sh
718 (lambda _
719 ;; Refer to the actual shell.
720 (substitute* '("src/bin/pg_ctl/pg_ctl.c"
721 "src/bin/psql/command.c")
722 (("/bin/sh") (which "sh")))
723 #t))
724 (add-after 'build 'build-contrib
725 (lambda _
726 (zero? (system* "make" "-C" "contrib"))))
727 (add-after 'install 'install-contrib
728 (lambda _
729 (zero? (system* "make" "-C" "contrib" "install")))))))
730 (inputs
731 `(("readline" ,readline)
732 ("libuuid" ,util-linux)
733 ("zlib" ,zlib)))
734 (home-page "https://www.postgresql.org/")
735 (synopsis "Powerful object-relational database system")
736 (description
737 "PostgreSQL is a powerful object-relational database system. It is fully
738 ACID compliant, has full support for foreign keys, joins, views, triggers, and
739 stored procedures (in multiple languages). It includes most SQL:2008 data
740 types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and
741 TIMESTAMP. It also supports storage of binary large objects, including
742 pictures, sounds, or video.")
743 (license (license:x11-style "file://COPYRIGHT"))))
744
745 (define-public postgresql-9.6
746 (package
747 (inherit postgresql)
748 (name "postgresql")
749 (version "9.6.8")
750 (source (origin
751 (method url-fetch)
752 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
753 version "/postgresql-" version ".tar.bz2"))
754 (sha256
755 (base32
756 "0w7bwf19wbdd3jjbjv03cnx56qka4801srcbsayk9v792awv7zga"))))))
757
758 (define-public qdbm
759 (package
760 (name "qdbm")
761 (version "1.8.78")
762 (source
763 (origin
764 (method url-fetch)
765 (uri (string-append "http://fallabs.com/" name "/"
766 name "-" version ".tar.gz"))
767 (sha256
768 (base32
769 "0gmpvhn02pkq280ffmn4da1g4mdr1xxz7l80b7y4n7km1mrzwrml"))))
770 (build-system gnu-build-system)
771 (arguments
772 `( #:configure-flags (list (string-append "LDFLAGS=-Wl,-rpath="
773 (assoc-ref %outputs "out")
774 "/lib"))))
775 (home-page "http://fallabs.com/qdbm")
776 (synopsis "Key-value database")
777 (description "QDBM is a library of routines for managing a
778 database. The database is a simple data file containing key-value
779 pairs. Every key and value is serial bytes with variable length.
780 Binary data as well as character strings can be used as a key or a
781 value. There is no concept of data tables or data types. Records are
782 organized in a hash table or B+ tree.")
783 (license license:lgpl2.1+)))
784
785 (define-public recutils
786 (package
787 (name "recutils")
788 (version "1.7")
789 (source (origin
790 (method url-fetch)
791 (uri (string-append "mirror://gnu/recutils/recutils-"
792 version ".tar.gz"))
793 (sha256
794 (base32
795 "0cdwa4094x3yx7vn98xykvnlp9rngvd58d19vs3vh5hrvggccg93"))))
796 (build-system gnu-build-system)
797
798 ;; Running tests in parallel leads to test failures and crashes in
799 ;; torture/utils.
800 (arguments '(#:parallel-tests? #f
801 #:configure-flags
802 (list (string-append "--with-bash-headers="
803 (assoc-ref %build-inputs "bash:include")
804 "/include/bash"))
805
806 #:phases (modify-phases %standard-phases
807 (add-before 'build 'set-bash4.4-header-location
808 (lambda _
809 (substitute* "bash/Makefile.in"
810 ;; Adjust the header search path for Bash
811 ;; 4.4 in accordance with 'bash.pc'.
812 (("AM_CPPFLAGS = (.*)$" _ rest)
813 (string-append "AM_CPPFLAGS = "
814 "-I$(BASH_HEADERS)/include "
815 rest))
816
817 ;; Install to PREFIX/lib/bash to match Bash
818 ;; 4.4's search path.
819 (("^libdir = .*$")
820 "libdir = @libdir@/bash\n"))
821 #t)))))
822
823 (native-inputs `(("emacs" ,emacs-minimal)
824 ("bc" ,bc)
825 ("bash:include" ,bash "include")
826 ("libuuid" ,util-linux)))
827
828 ;; TODO: Add more optional inputs.
829 (inputs `(("curl" ,curl)
830 ("libgcrypt" ,libgcrypt)
831 ("check" ,check)))
832 (synopsis "Manipulate plain text files as databases")
833 (description
834 "GNU Recutils is a set of tools and libraries for creating and
835 manipulating text-based, human-editable databases. Despite being text-based,
836 databases created with Recutils carry all of the expected features such as
837 unique fields, primary keys, time stamps and more. Many different field
838 types are supported, as is encryption.")
839 (license license:gpl3+)
840 (home-page "https://www.gnu.org/software/recutils/")))
841
842 (define-public rocksdb
843 (package
844 (name "rocksdb")
845 (version "5.10.4")
846 (source (origin
847 (method url-fetch)
848 (uri (string-append "https://github.com/facebook/rocksdb"
849 "/archive/v" version ".tar.gz"))
850 (file-name (string-append name "-" version ".tar.gz"))
851 (sha256
852 (base32
853 "0hp7jxr99vyc57n708hiqk4lks9a9zmjgfjc21mx6v1rmabj2944"))
854 (modules '((guix build utils)))
855 (snippet
856 '(begin
857 ;; TODO: unbundle gtest.
858 (delete-file "build_tools/gnu_parallel")
859 (substitute* "Makefile"
860 (("build_tools/gnu_parallel") "parallel"))
861 #t))))
862 (build-system gnu-build-system)
863 (arguments
864 `(#:make-flags (list "CC=gcc" "V=1"
865 ;; Ceph requires that RTTI is enabled.
866 "USE_RTTI=1"
867 (string-append "INSTALL_PATH="
868 (assoc-ref %outputs "out"))
869
870 ;; Running the full test suite takes hours and require
871 ;; a lot of disk space. Instead we only run a subset
872 ;; (see .travis.yml and Makefile).
873 "ROCKSDBTESTS_END=db_tailing_iter_test")
874 #:test-target "check_some"
875 ;; Many tests fail on 32-bit platforms. There are multiple reports about
876 ;; this upstream, but it's not going to be supported any time soon.
877 #:tests? (let ((system ,(or (%current-target-system)
878 (%current-system))))
879 (or (string-prefix? "x86_64-linux" system)
880 (string-prefix? "aarch64-linux" system)))
881 #:phases
882 (modify-phases %standard-phases
883 (add-after 'unpack 'patch-Makefile
884 (lambda _
885 (substitute* "Makefile"
886 ;; Don't depend on the static library when installing.
887 (("install: install-static")
888 "install: install-shared")
889 (("#!/bin/sh") (string-append "#!" (which "sh"))))
890 #t))
891 (delete 'configure)
892 ;; The default target is only needed for tests and built on demand.
893 (delete 'build)
894 (add-before 'check 'disable-optimizations
895 (lambda _
896 ;; Prevent the build from passing '-march=native' to the compiler.
897 (setenv "PORTABLE" "1")
898 #t))
899 (add-before 'check 'disable-failing-tests
900 (lambda _
901 (substitute* "Makefile"
902 ;; These tests reliably fail due to "Too many open files".
903 (("^[[:blank:]]+env_test[[:blank:]]+\\\\") "\\")
904 (("^[[:blank:]]+persistent_cache_test[[:blank:]]+\\\\") "\\"))
905 #t))
906 (add-after 'check 'build
907 ;; The default build target is a debug build for tests. The
908 ;; install target depends on the "shared_lib" release target
909 ;; so we build it here for clarity.
910 (lambda* (#:key (make-flags '()) parallel-build? #:allow-other-keys)
911 (apply invoke "make" "shared_lib"
912 `(,@(if parallel-build?
913 `("-j" ,(number->string (parallel-job-count)))
914 '())
915 ,@make-flags)))))))
916 (native-inputs
917 `(("parallel" ,parallel)
918 ("perl" ,perl)
919 ("procps" ,procps)
920 ("python" ,python-2)
921 ("which" ,which)))
922 (inputs
923 `(("bzip2" ,bzip2)
924 ("gflags" ,gflags)
925 ("jemalloc" ,jemalloc)
926 ("lz4" ,lz4)
927 ("snappy" ,snappy)
928 ("zlib" ,zlib)))
929 (home-page "http://rocksdb.org/")
930 (synopsis "Persistent key-value store for fast storage")
931 (description
932 "RocksDB is a library that forms the core building block for a fast
933 key-value server, especially suited for storing data on flash drives. It
934 has a @dfn{Log-Structured-Merge-Database} (LSM) design with flexible tradeoffs
935 between @dfn{Write-Amplification-Factor} (WAF), @dfn{Read-Amplification-Factor}
936 (RAF) and @dfn{Space-Amplification-Factor} (SAF). It has multi-threaded
937 compactions, making it specially suitable for storing multiple terabytes of
938 data in a single database. RocksDB is partially based on @code{LevelDB}.")
939 ;; RocksDB is dual licensed under GPL2 and ASL 2.0. Some header
940 ;; files carry the 3-clause BSD license.
941 (license (list license:gpl2 license:asl2.0 license:bsd-3))))
942
943 (define-public sparql-query
944 (package
945 (name "sparql-query")
946 (version "1.1")
947 (source (origin
948 (method url-fetch)
949 (uri (string-append "https://github.com/tialaramex/"
950 name "/archive/" version ".tar.gz"))
951 (sha256
952 (base32 "0yq3k20472rv8npcc420q9ab6idy584g5y0q501d360k5q0ggr8w"))
953 (file-name (string-append name "-" version ".tar.gz"))))
954 (build-system gnu-build-system)
955 (inputs
956 `(("readline" ,readline)
957 ("ncurses" ,ncurses)
958 ("glib" ,glib)
959 ("libxml2" ,libxml2)
960 ("curl" ,curl)))
961 (native-inputs
962 `(("pkg-config" ,pkg-config)))
963 (arguments
964 `(#:make-flags '("CC=gcc")
965 #:phases
966 (modify-phases %standard-phases
967 (delete 'configure)
968 ;; The Makefile uses git to obtain versioning information. This phase
969 ;; substitutes the git invocation with the package version.
970 (add-after 'unpack 'remove-git-dependency
971 (lambda _
972 (substitute* "Makefile"
973 (("^gitrev :=.*$")
974 (string-append "gitrev = \"v" ,version "\"")))))
975 ;; The install phase of the Makefile assumes $PREFIX/usr/local/bin.
976 ;; This replacement does the same thing, except for using $PREFIX/bin
977 ;; instead.
978 (replace 'install
979 (lambda* (#:key outputs #:allow-other-keys)
980 (let* ((out (assoc-ref outputs "out"))
981 (bin (string-append out "/bin")))
982 (install-file "sparql-query" bin)
983 (system* "ln" "--symbolic"
984 (string-append bin "/sparql-query")
985 (string-append bin "/sparql-update")))))
986 (replace 'check
987 (lambda* (#:key make-flags #:allow-other-keys)
988 (and
989 (zero? (apply system* "make" `(,@make-flags "scan-test")))
990 (zero? (system "./scan-test"))))))))
991 (home-page "https://github.com/tialaramex/sparql-query/")
992 (synopsis "Command-line tool for accessing SPARQL endpoints over HTTP")
993 (description "Sparql-query is a command-line tool for accessing SPARQL
994 endpoints over HTTP. It has been intentionally designed to 'feel' similar to
995 tools for interrogating SQL databases. For example, you can enter a query over
996 several lines, using a semi-colon at the end of a line to indicate the end of
997 your query. It also supports readline so that you can more easily recall and
998 edit previous queries, even across sessions. It can be used non-interactively,
999 for example from a shell script.")
1000 ;; Some files (like scan-sparql.c) contain a GPLv3+ license header, while
1001 ;; others (like sparql-query.c) contain a GPLv2+ license header.
1002 (license (list license:gpl3+))))
1003
1004 (define-public sqlite
1005 (package
1006 (name "sqlite")
1007 (version "3.22.0")
1008 (source (origin
1009 (method url-fetch)
1010 (uri (let ((numeric-version
1011 (match (string-split version #\.)
1012 ((first-digit other-digits ...)
1013 (string-append first-digit
1014 (string-pad-right
1015 (string-concatenate
1016 (map (cut string-pad <> 2 #\0)
1017 other-digits))
1018 6 #\0))))))
1019 (string-append "https://sqlite.org/2018/sqlite-autoconf-"
1020 numeric-version ".tar.gz")))
1021 (sha256
1022 (base32
1023 "04n6hnw2g818d7r92cp2608kd5mhzyysy83k29kbq1mp709an918"))))
1024 (build-system gnu-build-system)
1025 (inputs `(("readline" ,readline)))
1026 (arguments
1027 `(#:configure-flags
1028 ;; Add -DSQLITE_SECURE_DELETE, -DSQLITE_ENABLE_UNLOCK_NOTIFY and
1029 ;; -DSQLITE_ENABLE_DBSTAT_VTAB to CFLAGS. GNU Icecat will refuse
1030 ;; to use the system SQLite unless these options are enabled.
1031 (list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
1032 "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
1033 "-DSQLITE_ENABLE_DBSTAT_VTAB"))))
1034 (home-page "https://www.sqlite.org/")
1035 (synopsis "The SQLite database management system")
1036 (description
1037 "SQLite is a software library that implements a self-contained, serverless,
1038 zero-configuration, transactional SQL database engine. SQLite is the most
1039 widely deployed SQL database engine in the world. The source code for SQLite
1040 is in the public domain.")
1041 (license license:public-domain)))
1042
1043 ;; This is used by Tracker.
1044 (define-public sqlite-with-fts5
1045 (package (inherit sqlite)
1046 (name "sqlite-with-fts5")
1047 (arguments
1048 (substitute-keyword-arguments (package-arguments sqlite)
1049 ((#:configure-flags flags)
1050 `(cons "--enable-fts5" ,flags))))))
1051
1052 ;; This is used by Clementine.
1053 (define-public sqlite-with-fts3
1054 (package (inherit sqlite)
1055 (name "sqlite-with-fts3")
1056 (arguments
1057 (substitute-keyword-arguments (package-arguments sqlite)
1058 ((#:configure-flags flags)
1059 `(list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
1060 "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
1061 "-DSQLITE_ENABLE_DBSTAT_VTAB "
1062 "-DSQLITE_ENABLE_FTS3 "
1063 "-DSQLITE_ENABLE_FTS3_PARENTHESIS "
1064 "-DSQLITE_ENABLE_FTS3_TOKENIZER")))))))
1065
1066 (define-public tdb
1067 (package
1068 (name "tdb")
1069 (version "1.3.15")
1070 (source (origin
1071 (method url-fetch)
1072 (uri (string-append "https://www.samba.org/ftp/tdb/tdb-"
1073 version ".tar.gz"))
1074 (sha256
1075 (base32
1076 "0a37jhpij8wr4f4pjqdlwnffy2l6a2vkqdpz1bqxj6v06cwbz8dl"))))
1077 (build-system gnu-build-system)
1078 (arguments
1079 '(#:phases
1080 (modify-phases %standard-phases
1081 (replace 'configure
1082 (lambda* (#:key outputs #:allow-other-keys)
1083 (let ((out (assoc-ref outputs "out")))
1084 ;; The 'configure' script is a wrapper for Waf and
1085 ;; doesn't recognize things like '--enable-fast-install'.
1086 (zero? (system* "./configure"
1087 (string-append "--prefix=" out)))))))))
1088 (native-inputs
1089 `(;; TODO: Build the documentation.
1090 ;; ("docbook-xsl" ,docbook-xsl)
1091 ;; ("libxml2" ,libxml2)
1092 ;; ("libxslt" ,libxslt)
1093 ("python" ,python-2))) ;for the Waf build system
1094 (home-page "https://tdb.samba.org/")
1095 (synopsis "Trivial database")
1096 (description
1097 "TDB is a Trivial Database. In concept, it is very much like GDBM,
1098 and BSD's DB except that it allows multiple simultaneous writers and uses
1099 locking internally to keep writers from trampling on each other. TDB is also
1100 extremely small.")
1101 (license license:lgpl3+)))
1102
1103 (define-public perl-dbi
1104 (package
1105 (name "perl-dbi")
1106 (version "1.637")
1107 (source (origin
1108 (method url-fetch)
1109 (uri (string-append
1110 "mirror://cpan/authors/id/T/TI/TIMB/DBI-"
1111 version ".tar.gz"))
1112 (sha256
1113 (base32
1114 "1ikbsb6sb0bd2m1dqknl4vx7ikmnd41y0xq8np1l40g8jcjp2mr5"))))
1115 (build-system perl-build-system)
1116 (synopsis "Database independent interface for Perl")
1117 (description "This package provides an database interface for Perl.")
1118 (home-page "http://search.cpan.org/dist/DBI")
1119 (license license:perl-license)))
1120
1121 (define-public perl-dbix-class
1122 (package
1123 (name "perl-dbix-class")
1124 (version "0.082840")
1125 (source
1126 (origin
1127 (method url-fetch)
1128 (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
1129 "DBIx-Class-" version ".tar.gz"))
1130 (sha256
1131 (base32
1132 "1vw1f756g8m5hq11nqf5dk2cw2y4mqq91ca5p75fn5g3fp8syja0"))))
1133 (build-system perl-build-system)
1134 (native-inputs
1135 `(("perl-dbd-sqlite" ,perl-dbd-sqlite)
1136 ("perl-file-temp" ,perl-file-temp)
1137 ("perl-module-install" ,perl-module-install)
1138 ("perl-package-stash" ,perl-package-stash)
1139 ("perl-test-deep" ,perl-test-deep)
1140 ("perl-test-exception" ,perl-test-exception)
1141 ("perl-test-warn" ,perl-test-warn)))
1142 (propagated-inputs
1143 `(("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1144 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1145 ("perl-class-inspector" ,perl-class-inspector)
1146 ("perl-config-any" ,perl-config-any)
1147 ("perl-context-preserve" ,perl-context-preserve)
1148 ("perl-data-dumper-concise" ,perl-data-dumper-concise)
1149 ("perl-data-page" ,perl-data-page)
1150 ("perl-dbi" ,perl-dbi)
1151 ("perl-devel-globaldestruction" ,perl-devel-globaldestruction)
1152 ("perl-hash-merge" ,perl-hash-merge)
1153 ("perl-module-find" ,perl-module-find)
1154 ("perl-moo" ,perl-moo)
1155 ("perl-mro-compat" ,perl-mro-compat)
1156 ("perl-namespace-clean" ,perl-namespace-clean)
1157 ("perl-path-class" ,perl-path-class)
1158 ("perl-scalar-list-utils" ,perl-scalar-list-utils)
1159 ("perl-scope-guard" ,perl-scope-guard)
1160 ("perl-sql-abstract" ,perl-sql-abstract)
1161 ("perl-sub-name" ,perl-sub-name)
1162 ("perl-text-balanced" ,perl-text-balanced)
1163 ("perl-try-tiny" ,perl-try-tiny)))
1164 (home-page "http://search.cpan.org/dist/DBIx-Class")
1165 (synopsis "Extensible and flexible object <-> relational mapper")
1166 (description "An SQL to OO mapper with an object API inspired by
1167 Class::DBI (with a compatibility layer as a springboard for porting) and a
1168 resultset API that allows abstract encapsulation of database operations. It
1169 aims to make representing queries in your code as perl-ish as possible while
1170 still providing access to as many of the capabilities of the database as
1171 possible, including retrieving related records from multiple tables in a
1172 single query, \"JOIN\", \"LEFT JOIN\", \"COUNT\", \"DISTINCT\", \"GROUP BY\",
1173 \"ORDER BY\" and \"HAVING\" support.")
1174 (license license:perl-license)))
1175
1176 (define-public perl-dbix-class-cursor-cached
1177 (package
1178 (name "perl-dbix-class-cursor-cached")
1179 (version "1.001004")
1180 (source
1181 (origin
1182 (method url-fetch)
1183 (uri (string-append "mirror://cpan/authors/id/A/AR/ARCANEZ/"
1184 "DBIx-Class-Cursor-Cached-" version ".tar.gz"))
1185 (sha256
1186 (base32
1187 "09b2jahn2x12qm4f7qm1jzsxbz7qn1czp6a3fnl5l2i3l4r5421p"))))
1188 (build-system perl-build-system)
1189 (native-inputs
1190 `(("perl-cache-cache" ,perl-cache-cache)
1191 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1192 ("perl-module-install" ,perl-module-install)))
1193 (propagated-inputs
1194 `(("perl-carp-clan" ,perl-carp-clan)
1195 ("perl-dbix-class" ,perl-dbix-class)))
1196 (home-page "http://search.cpan.org/dist/DBIx-Class-Cursor-Cached")
1197 (synopsis "Cursor with built-in caching support")
1198 (description "DBIx::Class::Cursor::Cached provides a cursor class with
1199 built-in caching support.")
1200 (license license:perl-license)))
1201
1202 (define-public perl-dbix-class-introspectablem2m
1203 (package
1204 (name "perl-dbix-class-introspectablem2m")
1205 (version "0.001002")
1206 (source
1207 (origin
1208 (method url-fetch)
1209 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1210 "DBIx-Class-IntrospectableM2M-" version ".tar.gz"))
1211 (sha256
1212 (base32
1213 "1w47rh2241iy5x3a9bqsyd5kdp9sk43dksr99frzv4qn4jsazfn6"))))
1214 (build-system perl-build-system)
1215 (native-inputs
1216 `(("perl-module-install" ,perl-module-install)))
1217 (propagated-inputs
1218 `(("perl-dbix-class" ,perl-dbix-class)))
1219 (home-page "http://search.cpan.org/dist/DBIx-Class-IntrospectableM2M")
1220 (synopsis "Introspect many-to-many relationships")
1221 (description "Because the many-to-many relationships are not real
1222 relationships, they can not be introspected with DBIx::Class. Many-to-many
1223 relationships are actually just a collection of convenience methods installed
1224 to bridge two relationships. This DBIx::Class component can be used to store
1225 all relevant information about these non-relationships so they can later be
1226 introspected and examined.")
1227 (license license:perl-license)))
1228
1229 (define-public perl-dbix-class-schema-loader
1230 (package
1231 (name "perl-dbix-class-schema-loader")
1232 (version "0.07047")
1233 (source
1234 (origin
1235 (method url-fetch)
1236 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1237 "DBIx-Class-Schema-Loader-" version ".tar.gz"))
1238 (sha256
1239 (base32
1240 "06s2q6xj95600sdlfph57spjk2z1gjs4zwq5b7mz7d5izcxgnwb6"))))
1241 (build-system perl-build-system)
1242 (native-inputs
1243 `(("perl-config-any" ,perl-config-any)
1244 ("perl-config-general" ,perl-config-general)
1245 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1246 ("perl-dbix-class-introspectablem2m" ,perl-dbix-class-introspectablem2m)
1247 ("perl-module-install" ,perl-module-install)
1248 ("perl-moose" ,perl-moose)
1249 ("perl-moosex-markasmethods" ,perl-moosex-markasmethods)
1250 ("perl-moosex-nonmoose" ,perl-moosex-nonmoose)
1251 ("perl-namespace-autoclean" ,perl-namespace-autoclean)
1252 ("perl-test-deep" ,perl-test-deep)
1253 ("perl-test-differences" ,perl-test-differences)
1254 ("perl-test-exception" ,perl-test-exception)
1255 ("perl-test-pod" ,perl-test-pod)
1256 ("perl-test-warn" ,perl-test-warn)))
1257 (propagated-inputs
1258 `(("perl-class-unload" ,perl-class-unload)
1259 ("perl-class-inspector" ,perl-class-inspector)
1260 ("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1261 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1262 ("perl-carp-clan" ,perl-carp-clan)
1263 ("perl-data-dump" ,perl-data-dump)
1264 ("perl-dbix-class" ,perl-dbix-class)
1265 ("perl-hash-merge" ,perl-hash-merge)
1266 ("perl-list-moreutils" ,perl-list-moreutils)
1267 ("perl-lingua-en-inflect-phrase" ,perl-lingua-en-inflect-phrase)
1268 ("perl-lingua-en-inflect-number" ,perl-lingua-en-inflect-number)
1269 ("perl-lingua-en-tagger" ,perl-lingua-en-tagger)
1270 ("perl-namespace-clean" ,perl-namespace-clean)
1271 ("perl-mro-compat" ,perl-mro-compat)
1272 ("perl-scope-guard" ,perl-scope-guard)
1273 ("perl-string-camelcase" ,perl-string-camelcase)
1274 ("perl-string-toidentifier-en" ,perl-string-toidentifier-en)
1275 ("perl-sub-name" ,perl-sub-name)
1276 ("perl-try-tiny" ,perl-try-tiny)))
1277 (arguments `(#:tests? #f)) ;TODO: t/20invocations.t fails
1278 (home-page "http://search.cpan.org/dist/DBIx-Class-Schema-Loader")
1279 (synopsis "Create a DBIx::Class::Schema based on a database")
1280 (description "DBIx::Class::Schema::Loader automates the definition of a
1281 DBIx::Class::Schema by scanning database table definitions and setting up the
1282 columns, primary keys, unique constraints and relationships.")
1283 (license license:perl-license)))
1284
1285 (define-public perl-dbd-pg
1286 (package
1287 (name "perl-dbd-pg")
1288 (version "3.7.4")
1289 (source
1290 (origin
1291 (method url-fetch)
1292 (uri (string-append "mirror://cpan/authors/id/T/TU/TURNSTEP/"
1293 "DBD-Pg-" version ".tar.gz"))
1294 (sha256
1295 (base32
1296 "0gkqlvbmzbdm0g4k328nlkjdg3wrjm5i2n9jxj1i8sqxkm79rylz"))))
1297 (build-system perl-build-system)
1298 (native-inputs
1299 `(("perl-dbi" ,perl-dbi)))
1300 (propagated-inputs
1301 `(("perl-dbi" ,perl-dbi)
1302 ("postgresql" ,postgresql)))
1303 (home-page "http://search.cpan.org/dist/DBD-Pg")
1304 (synopsis "DBI PostgreSQL interface")
1305 (description "This package provides a PostgreSQL driver for the Perl5
1306 @dfn{Database Interface} (DBI).")
1307 (license license:perl-license)))
1308
1309 (define-public perl-dbd-mysql
1310 (package
1311 (name "perl-dbd-mysql")
1312 (version "4.043")
1313 (source
1314 (origin
1315 (method url-fetch)
1316 (uri (string-append "mirror://cpan/authors/id/M/MI/MICHIELB/"
1317 "DBD-mysql-" version ".tar.gz"))
1318 (sha256
1319 (base32
1320 "16bg7l28n65ngi1abjxvwk906a80i2vd5vzjn812dx8phdg8d7v2"))
1321 (patches (search-patches "perl-dbd-mysql-CVE-2017-10788.patch"))))
1322 (build-system perl-build-system)
1323 ;; Tests require running MySQL server
1324 (arguments `(#:tests? #f))
1325 (propagated-inputs
1326 `(("perl-dbi" ,perl-dbi)
1327 ("mysql" ,mysql)))
1328 (home-page "http://search.cpan.org/dist/DBD-mysql")
1329 (synopsis "DBI MySQL interface")
1330 (description "This package provides a MySQL driver for the Perl5
1331 @dfn{Database Interface} (DBI).")
1332 (license license:perl-license)))
1333
1334 (define-public perl-dbd-sqlite
1335 (package
1336 (name "perl-dbd-sqlite")
1337 (version "1.54")
1338 (source (origin
1339 (method url-fetch)
1340 (uri (string-append
1341 "mirror://cpan/authors/id/I/IS/ISHIGAKI/DBD-SQLite-"
1342 version ".tar.gz"))
1343 (sha256
1344 (base32
1345 "0sbj9lx9syzpknvjv8cz9jndg32qz775vy2prgq305npv3dsca9r"))))
1346 (build-system perl-build-system)
1347 (inputs `(("sqlite" ,sqlite)))
1348 (propagated-inputs `(("perl-dbi" ,perl-dbi)))
1349 (synopsis "SQlite interface for Perl")
1350 (description "DBD::SQLite is a Perl DBI driver for SQLite, that includes
1351 the entire thing in the distribution. So in order to get a fast transaction
1352 capable RDBMS working for your Perl project you simply have to install this
1353 module, and nothing else.")
1354 (license license:perl-license)
1355 (home-page "http://search.cpan.org/~ishigaki/DBD-SQLite/lib/DBD/SQLite.pm")))
1356
1357 (define-public perl-sql-abstract
1358 (package
1359 (name "perl-sql-abstract")
1360 (version "1.84")
1361 (source
1362 (origin
1363 (method url-fetch)
1364 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1365 "SQL-Abstract-" version ".tar.gz"))
1366 (sha256
1367 (base32
1368 "0xayvgv6nic61jm3nhg41rzwgm8h83wfyazvpaks0z7asjillpv5"))))
1369 (build-system perl-build-system)
1370 (native-inputs
1371 `(("perl-module-install" ,perl-module-install)
1372 ("perl-test-deep" ,perl-test-deep)
1373 ("perl-test-exception" ,perl-test-exception)
1374 ("perl-test-warn" ,perl-test-warn)))
1375 (propagated-inputs
1376 `(("perl-hash-merge" ,perl-hash-merge)
1377 ("perl-moo" ,perl-moo)
1378 ("perl-mro-compat" ,perl-mro-compat)
1379 ("perl-text-balanced" ,perl-text-balanced)))
1380 (home-page "http://search.cpan.org/dist/SQL-Abstract")
1381 (synopsis "Generate SQL from Perl data structures")
1382 (description "This module was inspired by the excellent DBIx::Abstract.
1383 While based on the concepts used by DBIx::Abstract, the concepts used have
1384 been modified to make the SQL easier to generate from Perl data structures.
1385 The underlying idea is for this module to do what you mean, based on the data
1386 structures you provide it, so that you don't have to modify your code every
1387 time your data changes.")
1388 (license license:perl-license)))
1389
1390 (define-public perl-sql-splitstatement
1391 (package
1392 (name "perl-sql-splitstatement")
1393 (version "1.00020")
1394 (source
1395 (origin
1396 (method url-fetch)
1397 (uri (string-append "mirror://cpan/authors/id/E/EM/EMAZEP/"
1398 "SQL-SplitStatement-" version ".tar.gz"))
1399 (sha256
1400 (base32
1401 "0bqg45k4c9qkb2ypynlwhpvzsl4ssfagmsalys18s5c79ps30z7p"))))
1402 (build-system perl-build-system)
1403 (native-inputs
1404 `(("perl-test-exception" ,perl-test-exception)))
1405 (propagated-inputs
1406 `(("perl-class-accessor" ,perl-class-accessor)
1407 ("perl-list-moreutils" ,perl-list-moreutils)
1408 ("perl-regexp-common" ,perl-regexp-common)
1409 ("perl-sql-tokenizer" ,perl-sql-tokenizer)))
1410 (home-page "http://search.cpan.org/dist/SQL-SplitStatement")
1411 (synopsis "Split SQL code into atomic statements")
1412 (description "This module tries to split any SQL code, even including
1413 non-standard extensions, into the atomic statements it is composed of.")
1414 (license license:perl-license)))
1415
1416 (define-public perl-sql-tokenizer
1417 (package
1418 (name "perl-sql-tokenizer")
1419 (version "0.24")
1420 (source
1421 (origin
1422 (method url-fetch)
1423 (uri (string-append "mirror://cpan/authors/id/I/IZ/IZUT/"
1424 "SQL-Tokenizer-" version ".tar.gz"))
1425 (sha256
1426 (base32
1427 "1qa2dfbzdlr5qqdam9yn78z5w3al5r8577x06qan8wv58ay6ka7s"))))
1428 (build-system perl-build-system)
1429 (home-page "http://search.cpan.org/dist/SQL-Tokenizer")
1430 (synopsis "SQL tokenizer")
1431 (description "SQL::Tokenizer is a tokenizer for SQL queries. It does not
1432 claim to be a parser or query verifier. It just creates sane tokens from a
1433 valid SQL query.")
1434 (license license:perl-license)))
1435
1436 (define-public unixodbc
1437 (package
1438 (name "unixodbc")
1439 (version "2.3.4")
1440 (source (origin
1441 (method url-fetch)
1442 (uri
1443 (string-append
1444 "ftp://ftp.unixodbc.org/pub/unixODBC/unixODBC-"
1445 version ".tar.gz"))
1446 (sha256
1447 (base32 "0f8y88rcc2akjvjv5y66yx7k0ms9h1s0vbcfy25j93didflhj59f"))))
1448 (build-system gnu-build-system)
1449 (synopsis "Data source abstraction library")
1450 (description "Unixodbc is a library providing an API with which to access
1451 data sources. Data sources include SQL Servers and any software with an ODBC
1452 Driver.")
1453 (license license:lgpl2.1+)
1454 ;; COPYING contains copy of lgpl2.1 - but copyright notices just say "LGPL"
1455 (home-page "http://www.unixodbc.org")))
1456
1457 (define-public unqlite
1458 (package
1459 (name "unqlite")
1460 (version "1.1.6")
1461 (source (origin
1462 (method url-fetch)
1463 ;; Contains bug fixes against the official release, and has an
1464 ;; autotooled build system.
1465 (uri (string-append "https://github.com/aidin36/tocc/releases/"
1466 "download/v1.0.0/"
1467 "unqlite-unofficial-" version ".tar.gz"))
1468 (sha256
1469 (base32
1470 "1sbpvhg15gadq0mpcy16q7k3rkg4b4dicpnn5xifpkpn02sqik3s"))))
1471 (build-system gnu-build-system)
1472 (arguments `(#:tests? #f)) ;No check target
1473 (home-page "http://www.unqlite.org")
1474 (synopsis "In-memory key/value and document store")
1475 (description
1476 "UnQLite is an in-process software library which implements a
1477 self-contained, serverless, zero-configuration, transactional NoSQL
1478 database engine. UnQLite is a document store database similar to
1479 MongoDB, Redis, CouchDB, etc. as well as a standard Key/Value store
1480 similar to BerkeleyDB, LevelDB, etc.")
1481 (license license:bsd-2)))
1482
1483 (define-public redis
1484 (package
1485 (name "redis")
1486 (version "4.0.2")
1487 (source (origin
1488 (method url-fetch)
1489 (uri (string-append "http://download.redis.io/releases/redis-"
1490 version".tar.gz"))
1491 (sha256
1492 (base32
1493 "04s8cgvwjj1979s3hg8zkwc9pyn3jkjpz5zidp87kfcipifr385i"))))
1494 (build-system gnu-build-system)
1495 (arguments
1496 '(#:tests? #f ; tests related to master/slave and replication fail
1497 #:phases (modify-phases %standard-phases
1498 (delete 'configure))
1499 #:make-flags `("CC=gcc"
1500 "MALLOC=libc"
1501 "LDFLAGS=-ldl"
1502 ,(string-append "PREFIX="
1503 (assoc-ref %outputs "out")))))
1504 (synopsis "Key-value cache and store")
1505 (description "Redis is an advanced key-value cache and store. Redis
1506 supports many data structures including strings, hashes, lists, sets, sorted
1507 sets, bitmaps and hyperloglogs.")
1508 (home-page "http://redis.io/")
1509 (license license:bsd-3)))
1510
1511 (define-public kyotocabinet
1512 (package
1513 (name "kyotocabinet")
1514 (version "1.2.76")
1515 (source (origin
1516 (method url-fetch)
1517 (uri (string-append "http://fallabs.com/kyotocabinet/pkg/"
1518 name "-" version ".tar.gz"))
1519 (sha256
1520 (base32
1521 "0g6js20x7vnpq4p8ghbw3mh9wpqksya9vwhzdx6dnlf354zjsal1"))))
1522 (build-system gnu-build-system)
1523 (arguments
1524 `(#:configure-flags
1525 (list
1526 "--disable-opt" ;"-march=native". XXX this also turns off -O0.
1527 (string-append "LDFLAGS=-Wl,-rpath="
1528 (assoc-ref %outputs "out") "/lib"))))
1529 (inputs `(("zlib" ,zlib)))
1530 (home-page "http://fallabs.com/kyotocabinet/")
1531 (synopsis
1532 "Kyoto Cabinet is a modern implementation of the DBM database")
1533 (description
1534 "Kyoto Cabinet is a standalone file-based database that supports Hash
1535 and B+ Tree data storage models. It is a fast key-value lightweight
1536 database and supports many programming languages. It is a NoSQL database.")
1537 (license license:gpl3+)))
1538
1539 (define-public tokyocabinet
1540 (package
1541 (name "tokyocabinet")
1542 (version "1.4.48")
1543 (source
1544 (origin
1545 (method url-fetch)
1546 (uri (string-append "http://fallabs.com/tokyocabinet/"
1547 name "-" version ".tar.gz"))
1548 (sha256
1549 (base32
1550 "140zvr0n8kvsl0fbn2qn3f2kh3yynfwnizn4dgbj47m975yg80x0"))))
1551 (build-system gnu-build-system)
1552 (arguments
1553 `(#:configure-flags
1554 (list "--enable-pthread" "--enable-off64" "--enable-fastest"
1555 (string-append "LDFLAGS=-Wl,-rpath="
1556 (assoc-ref %outputs "out") "/lib"))))
1557 (inputs
1558 `(("zlib" ,zlib)))
1559 (home-page "http://fallabs.com/tokyocabinet/")
1560 (synopsis "Tokyo Cabinet is a modern implementation of the DBM database")
1561 (description
1562 "Tokyo Cabinet is a library of routines for managing a database.
1563 The database is a simple data file containing records, each is a pair of a
1564 key and a value. Every key and value is serial bytes with variable length.
1565 Both binary data and character string can be used as a key and a value.
1566 There is neither concept of data tables nor data types. Records are
1567 organized in hash table, B+ tree, or fixed-length array.")
1568 (license license:lgpl2.1+)))
1569
1570 (define-public wiredtiger
1571 (package
1572 (name "wiredtiger")
1573 (version "2.9.1")
1574 (source (origin
1575 (method url-fetch)
1576 (uri (string-append
1577 "http://source.wiredtiger.com/releases/wiredtiger-"
1578 version ".tar.bz2"))
1579 (sha256
1580 (base32
1581 "0krwnb2zfbhvjaskwl875qzd3y626s84zcciq2mxr5c5riw3yh6s"))))
1582 (build-system gnu-build-system)
1583 (arguments
1584 '(#:configure-flags '("--enable-lz4" "--with-builtins=snappy,zlib")
1585 #:phases
1586 (modify-phases %standard-phases
1587 (add-before 'check 'disable-test/fops
1588 (lambda _
1589 ;; XXX: timed out after 3600 seconds of silence
1590 (substitute* "Makefile"
1591 (("test/fops") ""))
1592 #t)))))
1593 (inputs
1594 `(("lz4" ,lz4)
1595 ("zlib" ,zlib)
1596 ("snappy" ,snappy)))
1597 (home-page "http://source.wiredtiger.com/")
1598 (synopsis "NoSQL data engine")
1599 (description
1600 "WiredTiger is an extensible platform for data management. It supports
1601 row-oriented storage (where all columns of a row are stored together),
1602 column-oriented storage (where columns are stored in groups, allowing for
1603 more efficient access and storage of column subsets) and log-structured merge
1604 trees (LSM), for sustained throughput under random insert workloads.")
1605 (license license:gpl3) ; or GPL-2
1606 ;; configure.ac: WiredTiger requires a 64-bit build.
1607 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))))
1608
1609 (define-public guile-wiredtiger
1610 (package
1611 (name "guile-wiredtiger")
1612 (version "0.6.3")
1613 (source (origin
1614 (method git-fetch)
1615 (uri (git-reference
1616 (url "https://framagit.org/a-guile-mind/guile-wiredtiger.git")
1617 (commit "070ed68139d99c279f058a6c293f00292d35dbd7")))
1618 (file-name (string-append name "-" version "-checkout"))
1619 (sha256
1620 (base32
1621 "14rna97wsylajzxfif95wnblq85csgcfc666gh5dl0ssgd7x8llh"))))
1622 (build-system gnu-build-system)
1623 (arguments
1624 '(#:parallel-tests? #f ;; tests can't be run in parallel, yet.
1625 #:configure-flags
1626 (list (string-append "--with-libwiredtiger-prefix="
1627 (assoc-ref %build-inputs "wiredtiger")))
1628 #:make-flags '("GUILE_AUTO_COMPILE=0")))
1629 ;; TODO: Remove microkanren.scm when we have a separate package
1630 ;; for it.
1631 (native-inputs
1632 `(("autoconf" ,autoconf)
1633 ("automake" ,automake)
1634 ("pkg-config" ,pkg-config)))
1635 (inputs
1636 `(("wiredtiger" ,wiredtiger)
1637 ("guile" ,guile-2.2)))
1638 (propagated-inputs
1639 `(("guile-lib" ,guile-lib))) ;for (htmlprag)
1640 (synopsis "WiredTiger bindings for GNU Guile")
1641 (description
1642 "This package provides Guile bindings to the WiredTiger ``NoSQL''
1643 database. Various higher level database abstractions.")
1644 (home-page "https://framagit.org/a-guile-mind/guile-wiredtiger")
1645 (license license:gpl3+)))
1646
1647 (define-public perl-db-file
1648 (package
1649 (name "perl-db-file")
1650 (version "1.840")
1651 (source
1652 (origin
1653 (method url-fetch)
1654 (uri (string-append
1655 "mirror://cpan/authors/id/P/PM/PMQS/DB_File-"
1656 version
1657 ".tar.gz"))
1658 (sha256
1659 (base32
1660 "1i5jz85z4hpx15lw6ix27pyvrf0ziyh4z33lii4d3wnhz83lg1mp"))))
1661 (build-system perl-build-system)
1662 (inputs `(("bdb" ,bdb)))
1663 (native-inputs `(("perl-test-pod" ,perl-test-pod)))
1664 (arguments
1665 `(#:phases (modify-phases %standard-phases
1666 (add-before
1667 'configure 'modify-config.in
1668 (lambda* (#:key inputs #:allow-other-keys)
1669 (substitute* "config.in"
1670 (("/usr/local/BerkeleyDB") (assoc-ref inputs "bdb")))
1671 #t)))))
1672 (home-page "http://search.cpan.org/dist/DB_File")
1673 (synopsis
1674 "Perl5 access to Berkeley DB version 1.x")
1675 (description
1676 "The DB::File module provides Perl bindings to the Berkeley DB version 1.x.")
1677 (license license:perl-license)))
1678
1679 (define-public lmdb
1680 (package
1681 (name "lmdb")
1682 (version "0.9.21")
1683 (source (origin
1684 (method url-fetch)
1685 (uri (string-append "https://github.com/LMDB/lmdb/archive/"
1686 "LMDB_" version ".tar.gz"))
1687 (sha256
1688 (base32
1689 "0ndmj07hkm2ic60z1f4rdscxs7pq45hk9fibjyv5nhfclhsvd1qi"))))
1690 (build-system gnu-build-system)
1691 (arguments
1692 `(#:test-target "test"
1693 #:phases
1694 (modify-phases %standard-phases
1695 (replace 'configure
1696 (lambda* (#:key outputs #:allow-other-keys)
1697 (chdir (string-append
1698 (getenv "PWD") "/lmdb-LMDB_" ,version "/libraries/liblmdb"))
1699 (substitute* "Makefile"
1700 (("/usr/local") (assoc-ref outputs "out")))
1701 #t)))))
1702 (home-page "https://symas.com/products/lightning-memory-mapped-database")
1703 (synopsis "Lightning Memory-Mapped Database library")
1704 (description
1705 "The @dfn{Lightning Memory-Mapped Database} (LMDB) is a high-performance
1706 transactional database. Unlike more complex relational databases, LMDB handles
1707 only key-value pairs (stored as arbitrary byte arrays) and relies on the
1708 underlying operating system for caching and locking, keeping the code small and
1709 simple.
1710 The use of ‘zero-copy’ memory-mapped files combines the persistence of classic
1711 disk-based databases with high read performance that scales linearly over
1712 multiple cores. The size of each database is limited only by the size of the
1713 virtual address space — not physical RAM.")
1714 (license license:openldap2.8)))
1715
1716 (define-public libpqxx
1717 (package
1718 (name "libpqxx")
1719 (version "4.0.1")
1720 (source (origin
1721 (method url-fetch)
1722 (uri (string-append
1723 "http://pqxx.org/download/software/libpqxx/"
1724 name "-" version ".tar.gz"))
1725 (sha256
1726 (base32
1727 "0f6wxspp6rx12fkasanb0z2g2gc8dhcfwnxagx8wwqbpg6ifsz09"))))
1728 (build-system gnu-build-system)
1729 (native-inputs
1730 `(("python" ,python-2)))
1731 (inputs `(("postgresql" ,postgresql)))
1732 (arguments
1733 `(#:tests? #f ; # FAIL: 1
1734 #:phases
1735 (modify-phases %standard-phases
1736 (add-before 'configure 'fix-sed-command
1737 (lambda _
1738 ;; Newer sed versions error out if double brackets are not used.
1739 (substitute* "configure"
1740 (("\\[:space:\\]") "[[:space:]]"))
1741 #t)))))
1742 (synopsis "C++ connector for PostgreSQL")
1743 (description
1744 "Libpqxx is a C++ library to enable user programs to communicate with the
1745 PostgreSQL database back-end. The database back-end can be local or it may be
1746 on another machine, accessed via TCP/IP.")
1747 (home-page "http://pqxx.org/")
1748 (license license:bsd-3)))
1749
1750 (define-public python-peewee
1751 (package
1752 (name "python-peewee")
1753 (version "2.10.2")
1754 (source
1755 (origin
1756 (method url-fetch)
1757 (uri (pypi-uri "peewee" version))
1758 (sha256
1759 (base32
1760 "10f2mrd5hw6rjklrzaix2lsxlgc8vx3xak54arcy6yd791zhchi3"))))
1761 (build-system python-build-system)
1762 (arguments
1763 `(#:tests? #f)) ; Fails to import test data
1764 (native-inputs
1765 `(("python-cython" ,python-cython)))
1766 (home-page "https://github.com/coleifer/peewee/")
1767 (synopsis "Small object-relational mapping utility")
1768 (description
1769 "Peewee is a simple and small ORM (object-relation mapping) tool. Peewee
1770 handles converting between pythonic values and those used by databases, so you
1771 can use Python types in your code without having to worry. It has built-in
1772 support for sqlite, mysql and postgresql. If you already have a database, you
1773 can autogenerate peewee models using @code{pwiz}, a model generator.")
1774 (license license:expat)))
1775
1776 (define-public python2-peewee
1777 (package-with-python2 python-peewee))
1778
1779 (define-public sqlcipher
1780 (package
1781 (name "sqlcipher")
1782 (version "3.3.1")
1783 (source
1784 (origin
1785 (method url-fetch)
1786 (uri (string-append "https://github.com/sqlcipher/" name
1787 "/archive/v" version ".tar.gz"))
1788 (sha256
1789 (base32 "1gv58dlbpzrmznly52yqbxgvii0ib88zr3aszla1bsypwjr6flff"))
1790 (file-name (string-append name "-" version ".tar.gz"))))
1791 (build-system gnu-build-system)
1792 (inputs
1793 `(("libcrypto" ,openssl)
1794 ("libtcl8.6" ,tcl))) ; required for running the tests
1795 (native-inputs
1796 `(("tcl" ,tcl)))
1797 (arguments
1798 '(#:configure-flags
1799 '("--enable-tempstore=yes"
1800 "CFLAGS=-DSQLITE_HAS_CODEC -DSQLITE_ENABLE_FTS3"
1801 "LDFLAGS=-lcrypto -ltcl8.6"
1802 "--disable-tcl")
1803 ;; tests cannot be run from the Makefile
1804 ;; see: <https://github.com/sqlcipher/sqlcipher/issues/172>
1805 #:test-target "testfixture"
1806 #:phases
1807 (modify-phases %standard-phases
1808 (add-before 'check 'build-test-runner
1809 (assoc-ref %standard-phases 'check))
1810 (replace 'check
1811 (lambda _
1812 (zero?
1813 (system* "./testfixture" "test/crypto.test")))))))
1814 (home-page "https://www.zetetic.net/sqlcipher/")
1815 (synopsis
1816 "Library providing transparent encryption of SQLite database files")
1817 (description "SQLCipher is an implementation of SQLite, extended to
1818 provide transparent 256-bit AES encryption of database files. Pages are
1819 encrypted before being written to disk and are decrypted when read back. It’s
1820 well suited for protecting embedded application databases and for mobile
1821 development.")
1822 ;; The source files
1823 ;; src/{crypto.c,crypto_impl.c,crypto.h,crypto_cc.c,crypto_libtomcrypt.c},
1824 ;; src/{crypto_openssl.c,sqlcipher.h}, tool/crypto-speedtest.tcl,
1825 ;; test/crypto.test are licensed under a 3-clause BSD license. All other
1826 ;; source files are in the public domain.
1827 (license (list license:public-domain license:bsd-3))))
1828
1829 (define-public python-pyodbc-c
1830 (package
1831 (name "python-pyodbc-c")
1832 (version "3.1.4")
1833 (source
1834 (origin
1835 (method url-fetch)
1836 (uri (string-append "https://gitlab.com/daym/pyodbc-c/repository/"
1837 "archive.tar.gz?ref=v" version))
1838 (sha256
1839 (base32
1840 "05aq2297k779xidmxcwkrrxjvj1bh2q7d9a1rcjv6zr15y764ga9"))
1841 (file-name (string-append name "-" version ".tar.gz"))))
1842 (build-system python-build-system)
1843 (inputs
1844 `(("unixodbc" ,unixodbc)))
1845 (arguments
1846 `(;; No unit tests exist.
1847 #:tests? #f))
1848 (home-page "https://github.com/mkleehammer/pyodbc")
1849 (synopsis "Python ODBC Library")
1850 (description "@code{python-pyodbc-c} provides a Python DB-API driver
1851 for ODBC.")
1852 (license (license:x11-style "file://LICENSE.TXT"))))
1853
1854 (define-public python2-pyodbc-c
1855 (package-with-python2 python-pyodbc-c))
1856
1857 (define-public python-pyodbc
1858 (package
1859 (name "python-pyodbc")
1860 (version "4.0.21")
1861 (source
1862 (origin
1863 (method url-fetch)
1864 (uri (pypi-uri "pyodbc" version))
1865 (sha256
1866 (base32
1867 "0a83zwz3h1agshnsc6r7al6q83222w8601gpzzzjvjz5m56ghmcn"))
1868 (file-name (string-append name "-" version ".tar.gz"))))
1869 (build-system python-build-system)
1870 (inputs
1871 `(("unixodbc" ,unixodbc)))
1872 (arguments
1873 `(;; No unit tests exist.
1874 #:tests? #f))
1875 (home-page "https://github.com/mkleehammer/pyodbc")
1876 (synopsis "Python ODBC Library")
1877 (description "@code{python-pyodbc} provides a Python DB-API driver
1878 for ODBC.")
1879 (license (license:x11-style "file:///LICENSE.TXT"))))
1880
1881 (define-public python2-pyodbc
1882 (package-with-python2 python-pyodbc))
1883
1884 (define-public mdbtools
1885 (package
1886 (name "mdbtools")
1887 (version "0.7.1")
1888 (source
1889 (origin
1890 (method url-fetch)
1891 (uri (string-append "https://github.com/brianb/mdbtools/archive/"
1892 version ".tar.gz"))
1893 (sha256
1894 (base32
1895 "05hbmxcq173kzb899gdi3bz2qcc1vi3n1qbbkwpsvrq7ggf11wyw"))
1896 (file-name (string-append name "-" version ".tar.gz"))))
1897 (build-system gnu-build-system)
1898 (inputs
1899 `(("glib" ,glib)))
1900 (native-inputs
1901 `(("autoconf" ,autoconf)
1902 ("automake" ,automake)
1903 ("libtool" ,libtool)
1904 ("pkg-config" ,pkg-config)
1905 ("txt2man" ,txt2man)
1906 ("which" ,which)))
1907 (arguments
1908 `(#:phases
1909 (modify-phases %standard-phases
1910 (add-after 'unpack 'autoreconf
1911 (lambda _
1912 (zero? (system* "autoreconf" "-vfi")))))))
1913 (home-page "http://mdbtools.sourceforge.net/")
1914 (synopsis "Read Microsoft Access databases")
1915 (description "MDB Tools is a set of tools and applications to read the
1916 proprietary MDB file format used in Microsoft's Access database package. This
1917 includes programs to export schema and data from Microsoft's Access database
1918 file format to other databases such as MySQL, Oracle, Sybase, PostgreSQL,
1919 etc., and an SQL engine for performing simple SQL queries.")
1920 (license (list license:lgpl2.0
1921 license:gpl2+))))
1922
1923 (define-public python-lmdb
1924 (package
1925 (name "python-lmdb")
1926 (version "0.93")
1927 (source (origin
1928 (method url-fetch)
1929 (uri (pypi-uri "lmdb" version))
1930 (sha256
1931 (base32
1932 "0xdpb298fyl68acadbwv5801wcwfpnhc7sm4bnrq1x4bd5dhhsql"))
1933 (modules '((guix build utils)))
1934 (snippet
1935 ;; Delete bundled lmdb source files.
1936 '(begin
1937 (for-each delete-file (list "lib/lmdb.h"
1938 "lib/mdb.c"
1939 "lib/midl.c"
1940 "lib/midl.h"))
1941 #t))))
1942 (build-system python-build-system)
1943 (inputs
1944 `(("lmdb" ,lmdb)))
1945 (arguments
1946 `(#:phases
1947 (modify-phases %standard-phases
1948 (add-before 'build 'use-system-lmdb
1949 (lambda* (#:key inputs #:allow-other-keys)
1950 (let ((lmdb (assoc-ref inputs "lmdb")))
1951 (setenv "LMDB_FORCE_SYSTEM" "set")
1952 (setenv "LMDB_INCLUDEDIR" (string-append lmdb "/include"))
1953 (setenv "LMDB_LIBDIR" (string-append lmdb "/lib"))
1954 #t))))
1955 ;; Tests fail with: ‘lmdb.tool: Please specify environment (--env)’.
1956 #:tests? #f))
1957 (home-page "https://github.com/dw/py-lmdb")
1958 (synopsis "Python binding for the ‘Lightning’ database (LMDB)")
1959 (description
1960 "python-lmdb or py-lmdb is a Python binding for the @dfn{Lightning
1961 Memory-Mapped Database} (LMDB), a high-performance key-value store.")
1962 (license
1963 (list license:openldap2.8
1964 ;; ‘lib/win32/inttypes.h’ and ‘lib/win32-stdint/stdint.h’ are BSD-3,
1965 ;; but not actually needed on platforms currently supported by Guix.
1966 license:bsd-3))))
1967
1968 (define-public python2-lmdb
1969 (package-with-python2 python-lmdb))
1970
1971 (define-public python-orator
1972 (package
1973 (name "python-orator")
1974 (version "0.9.7")
1975 (source (origin
1976 (method url-fetch)
1977 (uri (pypi-uri "orator" version))
1978 (sha256
1979 (base32
1980 "14r58z64fdp76ixnvmi4lni762b405ynmsx6chr1qihs3yl9zn6c"))))
1981 (build-system python-build-system)
1982 (arguments
1983 `(#:phases
1984 (modify-phases %standard-phases
1985 (add-after 'unpack 'loosen-dependencies
1986 ;; Tests are not actually run since they are not included with the
1987 ;; distributed package, but dependencies are checked.
1988 (lambda _
1989 (substitute* "setup.py"
1990 ((",<.*'") "'")
1991 (("flexmock==0.9.7") "flexmock")
1992 ;; The pytest-mock package is out of date, so we remove minimum
1993 ;; version requirement.
1994 (("pytest-mock.*'") "pytest-mock'"))
1995 #t)))))
1996 (native-inputs
1997 `(("python-pytest-mock" ,python-pytest-mock)
1998 ("python-pytest" ,python-pytest)
1999 ("python-flexmock" ,python-flexmock)))
2000 (propagated-inputs
2001 `(("python-backpack" ,python-backpack)
2002 ("python-blinker" ,python-blinker)
2003 ("python-cleo" ,python-cleo)
2004 ("python-faker" ,python-faker)
2005 ("python-inflection" ,python-inflection)
2006 ("python-lazy-object-proxy" ,python-lazy-object-proxy)
2007 ("python-pendulum" ,python-pendulum)
2008 ("python-pyaml" ,python-pyaml)
2009 ("python-pygments" ,python-pygments)
2010 ("python-simplejson" ,python-simplejson)
2011 ("python-six" ,python-six)
2012 ("python-wrapt" ,python-wrapt)))
2013 (home-page "https://orator-orm.com/")
2014 (synopsis "ActiveRecord ORM for Python")
2015 (description
2016 "Orator provides a simple ActiveRecord-like Object Relational Mapping
2017 implementation for Python.")
2018 (license license:expat)
2019 (properties `((python2-variant . ,(delay python2-orator))))))
2020
2021 (define-public python2-orator
2022 (package-with-python2 (strip-python2-variant python-orator)))
2023
2024 (define-public virtuoso-ose
2025 (package
2026 (name "virtuoso-ose")
2027 (version "7.2.4.2")
2028 (source
2029 (origin
2030 (method url-fetch)
2031 (uri (string-append
2032 "https://github.com/openlink/virtuoso-opensource/releases/"
2033 "download/v" version "/virtuoso-opensource-" version ".tar.gz"))
2034 (sha256
2035 (base32 "12dqam1gc1v93l0bj0vlpvjqppki6y1hqrlznywxnw0rrz9pb002"))))
2036 (build-system gnu-build-system)
2037 (arguments
2038 `(#:tests? #f)) ; Tests require a network connection.
2039 (inputs
2040 `(("openssl" ,openssl)
2041 ("net-tools" ,net-tools)))
2042 (home-page "http://vos.openlinksw.com/owiki/wiki/VOS/")
2043 (synopsis "Multi-model database system")
2044 (description "Virtuoso is a scalable cross-platform server that combines
2045 relational, graph, and document data management with web application server
2046 and web services platform functionality.")
2047 ;; configure: error: ... can only be build on 64bit platforms
2048 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))
2049 (license license:gpl2)))
2050
2051 (define-public r-rmysql
2052 (package
2053 (name "r-rmysql")
2054 (version "0.10.14")
2055 (source
2056 (origin
2057 (method url-fetch)
2058 (uri (cran-uri "RMySQL" version))
2059 (sha256
2060 (base32
2061 "01891kn263b02y6addgpy3gn5axg7m10bqbqv7dg9yx9k85am590"))))
2062 (properties `((upstream-name . "RMySQL")))
2063 (build-system r-build-system)
2064 (native-inputs
2065 `(("pkg-config" ,pkg-config)))
2066 (inputs
2067 `(("mariadb" ,mariadb)
2068 ("zlib" ,zlib)))
2069 (propagated-inputs
2070 `(("r-dbi" ,r-dbi)))
2071 (home-page "https://github.com/r-dbi/RMySQL")
2072 (synopsis "Database interface and MySQL driver for R")
2073 (description
2074 "This package provides a DBI interface to MySQL / MariaDB. The RMySQL
2075 package contains an old implementation based on legacy code from S-PLUS which
2076 is being phased out. A modern MySQL client based on Rcpp is available from
2077 the RMariaDB package.")
2078 (license license:gpl2)))
2079
2080 (define-public python-ccm
2081 (package
2082 (name "python-ccm")
2083 (version "2.1.6")
2084 (source
2085 (origin
2086 (method url-fetch)
2087 (uri (pypi-uri "ccm" version))
2088 (sha256
2089 (base32
2090 "177dfxsmk3k4cih6fh6v8d91bh4nqx7ns6pc07w7m7i3cvdx3c8n"))))
2091 (build-system python-build-system)
2092 (propagated-inputs
2093 `(("python-pyyaml" ,python-pyyaml)
2094 ;; Not listed in setup.py, but used in ccmlib/node.py for full
2095 ;; functionality
2096 ("python-psutil" ,python-psutil)
2097 ("python-six" ,python-six)))
2098 (home-page "https://github.com/pcmanus/ccm")
2099 (synopsis "Cassandra Cluster Manager for Apache Cassandra clusters on
2100 localhost")
2101 (description "Cassandra Cluster Manager is a development tool for testing
2102 local Cassandra clusters. It creates, launches and removes Cassandra clusters
2103 on localhost.")
2104 (license license:asl2.0)))
2105
2106 (define-public python2-ccm
2107 (package-with-python2 python-ccm))
2108
2109 (define-public python2-pysqlite
2110 (package
2111 (name "python2-pysqlite")
2112 (version "2.8.3")
2113 (source
2114 (origin
2115 (method url-fetch)
2116 (uri (pypi-uri "pysqlite" version))
2117 (sha256
2118 (base32
2119 "1424gwq9sil2ffmnizk60q36vydkv8rxs6m7xs987kz8cdc37lqp"))))
2120 (build-system python-build-system)
2121 (inputs
2122 `(("sqlite" ,sqlite)))
2123 (arguments
2124 `(#:python ,python-2 ; incompatible with Python 3
2125 #:tests? #f)) ; no test target
2126 (home-page "https://github.com/ghaering/pysqlite")
2127 (synopsis "SQLite bindings for Python")
2128 (description
2129 "Pysqlite provides SQLite bindings for Python that comply to the
2130 Database API 2.0T.")
2131 (license license:zlib)))
2132
2133 (define-public python-sqlalchemy
2134 (package
2135 (name "python-sqlalchemy")
2136 (version "1.0.12")
2137 (source
2138 (origin
2139 (method url-fetch)
2140 (uri (string-append "https://pypi.python.org/packages/source/S/"
2141 "SQLAlchemy/SQLAlchemy-" version ".tar.gz"))
2142 (sha256
2143 (base32
2144 "1l8qclhd0s90w3pvwhi5mjxdwr5j7gw7cjka2fx6f2vqmq7f4yb6"))))
2145 (build-system python-build-system)
2146 (native-inputs
2147 `(("python-cython" ,python-cython) ;for c extensions
2148 ("python-pytest" ,python-pytest)
2149 ("python-mock" ,python-mock))) ;for tests
2150 (arguments
2151 `(#:phases
2152 (modify-phases %standard-phases
2153 (replace 'check
2154 (lambda _ (zero? (system* "py.test")))))))
2155 (home-page "http://www.sqlalchemy.org")
2156 (synopsis "Database abstraction library")
2157 (description
2158 "SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that
2159 gives application developers the full power and flexibility of SQL. It
2160 provides a full suite of well known enterprise-level persistence patterns,
2161 designed for efficient and high-performing database access, adapted into a
2162 simple and Pythonic domain language.")
2163 (license license:x11)))
2164
2165 (define-public python2-sqlalchemy
2166 (package-with-python2 python-sqlalchemy))
2167
2168 (define-public python-sqlalchemy-utils
2169 (package
2170 (name "python-sqlalchemy-utils")
2171 (version "0.32.21")
2172 (source
2173 (origin
2174 (method url-fetch)
2175 (uri (pypi-uri "SQLAlchemy-Utils" version))
2176 (sha256
2177 (base32
2178 "1myn71dn8j74xglyh46f12sh8ywb7j0j732rzwq70kvwwnq32m73"))))
2179 (build-system python-build-system)
2180 (arguments
2181 '(#:tests? #f)) ; FIXME: Many tests require a running database server.
2182 ;; #:phases
2183 ;; (modify-phases %standard-phases
2184 ;; (replace 'check
2185 ;; (lambda _
2186 ;; (zero? (system* "py.test" "sqlalchemy_utils" "tests")))))
2187 (propagated-inputs
2188 `(("python-six" ,python-six)
2189 ("python-sqlalchemy" ,python-sqlalchemy)))
2190 (native-inputs
2191 `(("python-dateutil" ,python-dateutil)
2192 ("python-flexmock" ,python-flexmock)
2193 ("python-psycopg2" ,python-psycopg2)
2194 ("python-pytest" ,python-pytest)
2195 ("python-pytz" ,python-pytz)))
2196 (home-page "https://github.com/kvesteri/sqlalchemy-utils")
2197 (synopsis "Various utility functions for SQLAlchemy")
2198 (description
2199 "SQLAlchemy-utils provides various utility functions and custom data types
2200 for SQLAlchemy. SQLAlchemy is an SQL database abstraction library for Python.
2201
2202 You might also want to install the following optional dependencies:
2203 @enumerate
2204 @item @code{python-passlib}
2205 @item @code{python-babel}
2206 @item @code{python-cryptography}
2207 @item @code{python-pytz}
2208 @item @code{python-psycopg2}
2209 @item @code{python-furl}
2210 @item @code{python-flask-babel}
2211 @end enumerate
2212 ")
2213 (license license:bsd-3)))
2214
2215 (define-public python2-sqlalchemy-utils
2216 (package-with-python2 python-sqlalchemy-utils))
2217
2218 (define-public python-alembic
2219 (package
2220 (name "python-alembic")
2221 (version "0.9.6")
2222 (source
2223 (origin
2224 (method url-fetch)
2225 (uri (pypi-uri "alembic" version))
2226 (sha256
2227 (base32
2228 "0cm73vabrqj92v7a0wwvldj8j7bc7dwv358kvkk7p87gx7mm2a04"))))
2229 (build-system python-build-system)
2230 (native-inputs
2231 `(("python-mock" ,python-mock)
2232 ("python-pytest-cov" ,python-pytest-cov)))
2233 (propagated-inputs
2234 `(("python-dateutil" ,python-dateutil)
2235 ("python-sqlalchemy" ,python-sqlalchemy)
2236 ("python-mako" ,python-mako)
2237 ("python-editor" ,python-editor)))
2238 (home-page "https://bitbucket.org/zzzeek/alembic")
2239 (synopsis
2240 "Database migration tool for SQLAlchemy")
2241 (description
2242 "Alembic is a lightweight database migration tool for usage with the
2243 SQLAlchemy Database Toolkit for Python.")
2244 (license license:expat)))
2245
2246 (define-public python2-alembic
2247 (package-with-python2 python-alembic))
2248
2249 (define-public python-pickleshare
2250 (package
2251 (name "python-pickleshare")
2252 (version "0.7.4")
2253 (source
2254 (origin
2255 (method url-fetch)
2256 (uri (pypi-uri "pickleshare" version))
2257 (sha256
2258 (base32 "0yvk14dzxk7g6qpr7iw23vzqbsr0dh4ij4xynkhnzpfz4xr2bac4"))))
2259 (build-system python-build-system)
2260 (arguments
2261 `(#:phases (modify-phases %standard-phases
2262 (replace 'check
2263 (lambda _
2264 (invoke "pytest"))))))
2265 (native-inputs
2266 `(("python-pytest" ,python-pytest)))
2267 (home-page "https://github.com/vivainio/pickleshare")
2268 (synopsis "Tiny key value database with concurrency support")
2269 (description
2270 "PickleShare is a small ‘shelve’-like datastore with concurrency support.
2271 Like shelve, a PickleShareDB object acts like a normal dictionary. Unlike
2272 shelve, many processes can access the database simultaneously. Changing a
2273 value in database is immediately visible to other processes accessing the same
2274 database. Concurrency is possible because the values are stored in separate
2275 files. Hence the “database” is a directory where all files are governed by
2276 PickleShare.")
2277 (properties `((python2-variant . ,(delay python2-pickleshare))))
2278 (license license:expat)))
2279
2280 (define-public python2-pickleshare
2281 (let ((pickleshare (package-with-python2
2282 (strip-python2-variant python-pickleshare))))
2283 (package (inherit pickleshare)
2284 (propagated-inputs `(("python2-pathlib2" ,python2-pathlib2)
2285 ,@(package-propagated-inputs pickleshare))))))
2286
2287 (define-public python-apsw
2288 (package
2289 (name "python-apsw")
2290 (version "3.20.1-r1")
2291 (source
2292 (origin
2293 (method url-fetch)
2294 (uri (string-append "https://github.com/rogerbinns/apsw/archive/"
2295 version ".tar.gz"))
2296 (file-name (string-append "apsw-" version ".tar.gz"))
2297 (sha256
2298 (base32
2299 "00ai7m2pqi26qaflhz314d8k5i3syw7xzr145fhfl0crhyh6adz2"))))
2300 (build-system python-build-system)
2301 (inputs
2302 `(("sqlite" ,sqlite)))
2303 (arguments
2304 `(#:phases
2305 (modify-phases %standard-phases
2306 (replace 'build
2307 (lambda _
2308 (invoke "python" "setup.py" "build" "--enable-all-extensions")
2309 #t))
2310 (add-after 'build 'build-test-helper
2311 (lambda _
2312 (invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
2313 "-I." "-Isqlite3" "src/testextension.c")
2314 #t))
2315 (delete 'check)
2316 (add-after 'install 'check
2317 (lambda* (#:key inputs outputs #:allow-other-keys)
2318 (add-installed-pythonpath inputs outputs)
2319 (invoke "python" "setup.py" "test")
2320 #t)))))
2321 (home-page "https://github.com/rogerbinns/apsw/")
2322 (synopsis "Another Python SQLite Wrapper")
2323 (description "APSW is a Python wrapper for the SQLite
2324 embedded relational database engine. In contrast to other wrappers such as
2325 pysqlite it focuses on being a minimal layer over SQLite attempting just to
2326 translate the complete SQLite API into Python.")
2327 (license license:zlib)))
2328
2329 (define-public python2-apsw
2330 (package-with-python2 python-apsw))
2331
2332 (define-public python2-neo4j-driver
2333 (package
2334 (name "python2-neo4j-driver")
2335 ;; NOTE: When upgrading to 1.5.0, please add a python3 variant.
2336 (version "1.4.0")
2337 (source (origin
2338 (method url-fetch)
2339 (uri (pypi-uri "neo4j-driver" version))
2340 (sha256
2341 (base32
2342 "011r1vh182p8mm83d8dz9rfnc3l7rf7fd00cyrbyfzi71jmc4g98"))))
2343 (build-system python-build-system)
2344 (arguments
2345 `(#:python ,python-2))
2346 (home-page "https://neo4j.com/developer/python/")
2347 (synopsis "Neo4j driver code written in Python")
2348 (description "This package provides the Neo4j Python driver that connects
2349 to the database using Neo4j's binary protocol. It aims to be minimal, while
2350 being idiomatic to Python.")
2351 (license license:asl2.0)))
2352
2353 (define-public python2-py2neo
2354 (package
2355 (name "python2-py2neo")
2356 (version "3.1.2")
2357 (source (origin
2358 (method url-fetch)
2359 (uri (pypi-uri "py2neo" version))
2360 (sha256
2361 (base32
2362 "1f1q95vqcvlc3nsc33p841swnjdcjazddlq2dzi3qfnjqjrajxw1"))))
2363 (build-system python-build-system)
2364 (arguments
2365 `(#:python ,python-2))
2366 (home-page "http://py2neo.org")
2367 (synopsis "Library and toolkit for working with Neo4j in Python")
2368 (description "This package provides a client library and toolkit for
2369 working with Neo4j from within Python applications and from the command
2370 line. The core library has no external dependencies and has been carefully
2371 designed to be easy and intuitive to use.")
2372 (license license:asl2.0)))
2373
2374 (define-public python-psycopg2
2375 (package
2376 (name "python-psycopg2")
2377 (version "2.7.3.1")
2378 (source
2379 (origin
2380 (method url-fetch)
2381 (uri (pypi-uri "psycopg2" version))
2382 (sha256
2383 (base32
2384 "0rda1j02ds6s28752fhmpwg761sh6jsxi1gpczqkrd28cki1cywv"))))
2385 (build-system python-build-system)
2386 (arguments
2387 ;; Tests would require a postgresql database "psycopg2_test"
2388 ;; and a running postgresql database management service.
2389 `(#:tests? #f)) ; TODO re-enable after providing a test-db.
2390 (inputs
2391 `(("postgresql" ,postgresql))) ; libpq
2392 (home-page "http://initd.org/psycopg/")
2393 (synopsis "Python PostgreSQL adapter")
2394 (description
2395 "psycopg2 is a thread-safe PostgreSQL adapter that implements DB-API 2.0. ")
2396 (license license:lgpl3+)))
2397
2398 (define-public python2-psycopg2
2399 (package-with-python2 python-psycopg2))
2400
2401 (define-public python-sadisplay
2402 (package
2403 (name "python-sadisplay")
2404 (version "0.4.8")
2405 (source
2406 (origin
2407 (method url-fetch)
2408 (uri (pypi-uri "sadisplay" version))
2409 (sha256
2410 (base32
2411 "01d9lxhmgpb68gy8rd6zj6fcwp84n2qq210n1qsk3qbsir79bzh4"))))
2412 (build-system python-build-system)
2413 (propagated-inputs
2414 `(("python-sqlalchemy" ,python-sqlalchemy)))
2415 (native-inputs
2416 ;; For tests.
2417 `(("python-nose" ,python-nose)))
2418 (home-page "https://bitbucket.org/estin/sadisplay")
2419 (synopsis "SQLAlchemy schema displayer")
2420 (description "This package provides a program to build Entity
2421 Relationship diagrams from a SQLAlchemy model (or directly from the
2422 database).")
2423 (license license:bsd-3)))
2424
2425 (define-public python2-sadisplay
2426 (package-with-python2 python-sadisplay))
2427
2428 (define-public python-mysqlclient
2429 (package
2430 (name "python-mysqlclient")
2431 (version "1.3.10")
2432 (source
2433 (origin
2434 (method url-fetch)
2435 (uri (pypi-uri "mysqlclient" version))
2436 (sha256
2437 (base32
2438 "0qkj570x4rbsblji6frvsvp2v1ap32dqzj1lq62zp9515ffsyaj5"))))
2439 (build-system python-build-system)
2440 (native-inputs
2441 `(("mariadb" ,mariadb)
2442 ("nose" ,python-nose)
2443 ("mock" ,python-mock)
2444 ("py.test" ,python-pytest)))
2445 (inputs
2446 `(("mysql" ,mysql)
2447 ("libz" ,zlib)
2448 ("openssl" ,openssl)))
2449 (home-page "https://github.com/PyMySQL/mysqlclient-python")
2450 (synopsis "MySQLdb is an interface to the popular MySQL database server for Python")
2451 (description "MySQLdb is an interface to the popular MySQL database server
2452 for Python. The design goals are:
2453 @enumerate
2454 @item Compliance with Python database API version 2.0 [PEP-0249],
2455 @item Thread-safety,
2456 @item Thread-friendliness (threads will not block each other).
2457 @end enumerate")
2458 (license license:gpl2)))
2459
2460 (define-public python2-mysqlclient
2461 (package-with-python2 python-mysqlclient))
2462
2463 (define-public python-hiredis
2464 (package
2465 (name "python-hiredis")
2466 (version "0.2.0")
2467 (source
2468 (origin
2469 (method url-fetch)
2470 (uri (pypi-uri "hiredis" version))
2471 (sha256
2472 (base32
2473 "1dfm2k9l9zar9nw9fwmm74zrgraxdxs04vx9li56fjcf289qx5fa"))))
2474 (build-system python-build-system)
2475 (arguments
2476 ;; no tests
2477 `(#:tests? #f))
2478 (home-page "https://github.com/redis/hiredis-py")
2479 (synopsis "Python extension that wraps protocol parsing code in hiredis")
2480 (description "Python-hiredis is a python extension that wraps protocol
2481 parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.")
2482 (license license:bsd-3)))
2483
2484 (define-public python2-hiredis
2485 (package-with-python2 python-hiredis))
2486
2487 (define-public python-fakeredis
2488 (package
2489 (name "python-fakeredis")
2490 (version "0.8.2")
2491 (source
2492 (origin
2493 (method url-fetch)
2494 (uri (pypi-uri "fakeredis" version))
2495 (sha256
2496 (base32
2497 "0zncahj3byyasyfx9i7k991ph0n0lq8v3a21pqri5qxn9564bk9r"))))
2498 (build-system python-build-system)
2499 (arguments
2500 ;; no tests
2501 `(#:tests? #f))
2502 (home-page "https://github.com/jamesls/fakeredis")
2503 (synopsis "Fake implementation of redis API for testing purposes")
2504 (description "Fakeredis is a pure python implementation of the redis-py
2505 python client that simulates talking to a redis server. This was created for a
2506 single purpose: to write unittests. Setting up redis is not hard, but many time
2507 you want to write unittests that do not talk to an external server (such as
2508 redis). This module now allows tests to simply use this module as a reasonable
2509 substitute for redis.")
2510 (license license:bsd-3)))
2511
2512 (define-public python2-fakeredis
2513 (package-with-python2 python-fakeredis))
2514
2515 (define-public python-redis
2516 (package
2517 (name "python-redis")
2518 (version "2.10.6")
2519 (source
2520 (origin
2521 (method url-fetch)
2522 (uri (pypi-uri "redis" version))
2523 (sha256
2524 (base32 "03vcgklykny0g0wpvqmy8p6azi2s078317wgb2xjv5m2rs9sjb52"))))
2525 (build-system python-build-system)
2526 ;; Tests require a running Redis server
2527 (arguments '(#:tests? #f))
2528 ;; As long as we are not running test, we do not need this input :-)
2529 ;;(native-inputs
2530 ;; `(("python-pytest" ,python-pytest)))
2531 (home-page "https://github.com/andymccurdy/redis-py")
2532 (synopsis "Redis Python client")
2533 (description
2534 "This package provides a Python interface to the Redis key-value store.")
2535 (license license:expat)))
2536
2537 (define-public python2-redis
2538 (package-with-python2 python-redis))
2539
2540 (define-public python-rq
2541 (package
2542 (name "python-rq")
2543 (version "0.7.1")
2544 (source
2545 (origin
2546 (method url-fetch)
2547 (uri (pypi-uri "rq" version))
2548 (sha256
2549 (base32 "0gaq5pnh0zy46r8jvygi0ifbvz3pq6i7xla78ijcgjw0x77qzsdh"))))
2550 (build-system python-build-system)
2551 (propagated-inputs
2552 `(("python-click" ,python-click)
2553 ("python-redis" ,python-redis)))
2554 (home-page "http://python-rq.org/")
2555 (synopsis "Simple job queues for Python")
2556 (description
2557 "RQ (Redis Queue) is a simple Python library for queueing jobs and
2558 processing them in the background with workers. It is backed by Redis and it
2559 is designed to have a low barrier to entry.")
2560 (license license:bsd-2)))
2561
2562 (define-public python2-rq
2563 (package-with-python2 python-rq))
2564
2565 (define-public python-trollius-redis
2566 (package
2567 (name "python-trollius-redis")
2568 (version "0.1.4")
2569 (source
2570 (origin
2571 (method url-fetch)
2572 (uri (pypi-uri "trollius_redis" version))
2573 (sha256
2574 (base32
2575 "0k3vypszmgmaipgw9xscvgm79h2zd6p6ci8gdp5sxl6g5kbqr9fy"))))
2576 (build-system python-build-system)
2577 ;; TODO: Tests require packaging 'hiredis'.
2578 (arguments '(#:tests? #f))
2579 (home-page "https://github.com/benjolitz/trollius-redis")
2580 (synopsis "Port of asyncio-redis to trollius")
2581 (description "@code{trollius-redis} is a Redis client for Python
2582 trollius. It is an asynchronious IO (PEP 3156) implementation of the
2583 Redis protocol.")
2584 (license license:bsd-2)))
2585
2586 (define-public python2-trollius-redis
2587 (package-with-python2 python-trollius-redis))
2588
2589 (define-public python-sqlparse
2590 (package
2591 (name "python-sqlparse")
2592 (version "0.2.4")
2593 (source (origin
2594 (method url-fetch)
2595 (uri (pypi-uri "sqlparse" version))
2596 (sha256
2597 (base32
2598 "1v3xh0bkfhb262dbndgzhivpnhdwavdzz8jjhx9vx0xbrx2880nf"))))
2599 (build-system python-build-system)
2600 (arguments
2601 `(#:phases
2602 (modify-phases %standard-phases
2603 (replace 'check
2604 (lambda _ (zero? (system* "py.test")))))))
2605 (native-inputs
2606 `(("python-pytest" ,python-pytest)))
2607 (home-page "https://github.com/andialbrecht/sqlparse")
2608 (synopsis "Non-validating SQL parser")
2609 (description "Sqlparse is a non-validating SQL parser for Python. It
2610 provides support for parsing, splitting and formatting SQL statements.")
2611 (license license:bsd-3)))
2612
2613 (define-public python2-sqlparse
2614 (package-with-python2 python-sqlparse))
2615
2616 (define-public python-sql
2617 (package
2618 (name "python-sql")
2619 (version "0.9")
2620 (source
2621 (origin
2622 (method url-fetch)
2623 (uri (pypi-uri "python-sql" version))
2624 (sha256
2625 (base32
2626 "0p6kaqj02vz0habmdx37zjk6hjxdfm8aw737zs059vvpr70ird87"))))
2627 (build-system python-build-system)
2628 (home-page "https://python-sql.tryton.org/")
2629 (synopsis "Library to write SQL queries in a pythonic way")
2630 (description "@code{python-sql} is a library to write SQL queries, that
2631 transforms idiomatic python function calls to well-formed SQL queries.")
2632 (license license:bsd-3)))
2633
2634 (define-public python2-sql
2635 (package-with-python2 python-sql))
2636
2637 (define-public mongo-tools
2638 (package
2639 (name "mongo-tools")
2640 (version "3.4.0")
2641 (source
2642 (origin (method git-fetch)
2643 (uri (git-reference
2644 (url "https://github.com/mongodb/mongo-tools")
2645 (commit (string-append "r" version))))
2646 (file-name (git-file-name name version))
2647 (sha256
2648 (base32
2649 "1bcsz5cvj39a7nsxsfqmz9igrw33j6yli9kffigqyscs52amw7x1"))))
2650 (build-system go-build-system)
2651 (arguments
2652 `(#:import-path "github.com/mongodb/mongo-tools"
2653 #:modules ((srfi srfi-1)
2654 (guix build go-build-system)
2655 (guix build utils))
2656 #:phases
2657 (let ((all-tools
2658 '("bsondump" "mongodump" "mongoexport" "mongofiles"
2659 "mongoimport" "mongooplog" "mongorestore"
2660 "mongostat" "mongotop")))
2661 (modify-phases %standard-phases
2662 (add-after 'unpack 'delete-bundled-source-code
2663 (lambda _
2664 (delete-file-recursively
2665 "src/github.com/mongodb/mongo-tools/vendor")
2666 #t))
2667 ;; We don't need to install the source code for end-user applications
2668 (delete 'install-source)
2669 (replace 'build
2670 (lambda _
2671 (every (lambda (tool)
2672 (let ((command
2673 `("go" "build"
2674 ;; This is where the tests expect to find the
2675 ;; executables
2676 "-o" ,(string-append
2677 "src/github.com/mongodb/mongo-tools/bin/"
2678 tool)
2679 "-v"
2680 "-tags=\"ssl sasl\""
2681 "-ldflags"
2682 "-extldflags=-Wl,-z,now,-z,relro"
2683 ,(string-append
2684 "src/github.com/mongodb/mongo-tools/"
2685 tool "/main/" tool ".go"))))
2686 (simple-format #t "build: running ~A\n"
2687 (string-join command))
2688 (apply invoke command)))
2689 all-tools)))
2690 (replace 'check
2691 (lambda _
2692 (with-directory-excursion "src"
2693 (every (lambda (tool)
2694 (invoke
2695 "go" "test" "-v"
2696 (string-append "github.com/mongodb/mongo-tools/" tool)))
2697 all-tools))))
2698 (replace 'install
2699 (lambda* (#:key outputs #:allow-other-keys)
2700 (for-each (lambda (tool)
2701 (install-file
2702 (string-append "src/github.com/mongodb/mongo-tools/bin/" tool)
2703 (string-append (assoc-ref outputs "out")
2704 "/bin")))
2705 all-tools)))))))
2706 (native-inputs
2707 `(("go-github.com-howeyc-gopass" ,go-github.com-howeyc-gopass)
2708 ("go-github.com-jessevdk-go-flags" ,go-github.com-jessevdk-go-flags)
2709 ("go-golang.org-x-crypto-ssh-terminal" ,go-golang.org-x-crypto-ssh-terminal)
2710 ("go-gopkg.in-mgo.v2" ,go-gopkg.in-mgo.v2)
2711 ("go-gopkg.in-tomb.v2" ,go-gopkg.in-tomb.v2)
2712 ("go-github.com-nsf-termbox-go" ,go-github.com-nsf-termbox-go)
2713 ("go-github.com-smartystreets-goconvey" ,go-github.com-smartystreets-goconvey)))
2714 (home-page "https://github.com/mongodb/mongo-tools")
2715 (synopsis "Various tools for interacting with MongoDB and BSON")
2716 (description
2717 "This package includes a collection of tools related to MongoDB.
2718 @table @code
2719 @item bsondump
2720 Display BSON files in a human-readable format
2721 @item mongoimport
2722 Convert data from JSON, TSV or CSV and insert them into a collection
2723 @item mongoexport
2724 Write an existing collection to CSV or JSON format
2725 @item mongodump/mongorestore
2726 Dump MongoDB backups to disk in the BSON format
2727 @item mongorestore
2728 Read MongoDB backups in the BSON format, and restore them to a live database
2729 @item mongostat
2730 Monitor live MongoDB servers, replica sets, or sharded clusters
2731 @item mongofiles
2732 Read, write, delete, or update files in GridFS
2733 @item mongooplog
2734 Replay oplog entries between MongoDB servers
2735 @item mongotop
2736 Monitor read/write activity on a mongo server
2737 @end table")
2738 (license license:asl2.0)))