gnu/packages/mpi.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
   3 ;;; Copyright © 2014, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
   4 ;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
   5 ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
   6 ;;; Copyright © 2017 Dave Love <fx@gnu.org>
   7 ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
   8 ;;;
   9 ;;; This file is part of GNU Guix.
  10 ;;;
  11 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  12 ;;; under the terms of the GNU General Public License as published by
  13 ;;; the Free Software Foundation; either version 3 of the License, or (at
  14 ;;; your option) any later version.
  15 ;;;
  16 ;;; GNU Guix is distributed in the hope that it will be useful, but
  17 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  18 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  19 ;;; GNU General Public License for more details.
  20 ;;;
  21 ;;; You should have received a copy of the GNU General Public License
  22 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  23
  24 (define-module (gnu packages mpi)
  25   #:use-module (guix packages)
  26   #:use-module ((guix licenses)
  27                 #:hide (expat))
  28   #:use-module (guix download)
  29   #:use-module (guix utils)
  30   #:use-module (guix build-system gnu)
  31   #:use-module (gnu packages)
  32   #:use-module (gnu packages gcc)
  33   #:use-module (gnu packages linux)
  34   #:use-module (gnu packages pciutils)
  35   #:use-module (gnu packages xorg)
  36   #:use-module (gnu packages gtk)
  37   #:use-module (gnu packages xml)
  38   #:use-module (gnu packages perl)
  39   #:use-module (gnu packages ncurses)
  40   #:use-module (gnu packages pkg-config)
  41   #:use-module (gnu packages valgrind)
  42   #:use-module (ice-9 match))
  43
  44 (define-public hwloc
  45   (package
  46     (name "hwloc")
  47     (version "1.11.8")
  48     (source (origin
  49               (method url-fetch)
  50               (uri (string-append "https://www.open-mpi.org/software/hwloc/v"
  51                                   (version-major+minor version)
  52                                   "/downloads/hwloc-" version ".tar.bz2"))
  53               (sha256
  54                (base32
  55                 "0karxv4r1r8sa7ki5aamlxdvyvz0bvzq4gdhq0yi5nc4a0k11vzc"))))
  56     (build-system gnu-build-system)
  57     (outputs '("out"           ;'lstopo' & co., depends on Cairo, libx11, etc.
  58                "lib"           ;small closure
  59                "debug"))
  60     (inputs
  61      `(("libx11" ,libx11)
  62        ("cairo" ,cairo)
  63        ("ncurses" ,ncurses)
  64        ("expat" ,expat)
  65        ,@(if (not (string-prefix? "armhf"
  66                                   (or (%current-target-system)
  67                                       (%current-system))))
  68              `(("numactl" ,numactl))
  69              '())))
  70     (propagated-inputs
  71      ;; hwloc.pc lists it in 'Requires.private'.
  72      `(("libpciaccess" ,libpciaccess)))
  73     (native-inputs
  74      `(("pkg-config" ,pkg-config)))
  75     (arguments
  76      `(#:configure-flags '("--localstatedir=/var")
  77        #:phases
  78        (modify-phases %standard-phases
  79          (add-after 'install 'refine-libnuma
  80            ;; Give -L arguments for libraries to avoid propagation
  81            (lambda* (#:key inputs outputs #:allow-other-keys)
  82              (let ((out  (assoc-ref outputs "lib"))
  83                    (numa (assoc-ref inputs "numactl")))
  84                (substitute* (map (lambda (f) (string-append out "/" f))
  85                                  '("lib/pkgconfig/hwloc.pc" "lib/libhwloc.la"))
  86                  (("-lnuma" lib)
  87                   (string-append "-L" numa "/lib " lib))))))
  88          (add-after 'install 'avoid-circular-references
  89            (lambda* (#:key outputs #:allow-other-keys)
  90              (let ((lib (assoc-ref outputs "lib")))
  91                ;; Suppress the 'prefix=' and 'exec_prefix=' lines so that the
  92                ;; "lib" output doesn't refer to "out".
  93                (substitute* (string-append lib "/lib/pkgconfig/hwloc.pc")
  94                  (("^.*prefix=.*$")
  95                   ""))
  96                #t))))))
  97     (home-page "https://www.open-mpi.org/projects/hwloc/")
  98     (synopsis "Abstraction of hardware architectures")
  99     (description
 100      "hwloc provides a portable abstraction (across OS,
 101 versions, architectures, ...) of the hierarchical topology of modern
 102 architectures, including NUMA memory nodes, sockets, shared caches, cores and
 103 simultaneous multithreading.  It also gathers various attributes such as cache
 104 and memory information.  It primarily aims at helping high-performance
 105 computing applications with gathering information about the hardware so as to
 106 exploit it accordingly and efficiently.
 107
 108 hwloc may display the topology in multiple convenient formats.  It also offers
 109 a powerful programming interface to gather information about the hardware,
 110 bind processes, and much more.")
 111     (license bsd-3)))
 112
 113 (define-public openmpi
 114   (package
 115     (name "openmpi")
 116     (version "1.10.7")
 117     (source
 118      (origin
 119       (method url-fetch)
 120       (uri (string-append "https://www.open-mpi.org/software/ompi/v"
 121                           (version-major+minor version)
 122                           "/downloads/openmpi-" version ".tar.bz2"))
 123       (sha256
 124        (base32
 125         "142s1vny9gllkq336yafxayjgcirj2jv0ddabj879jgya7hyr2d0"))))
 126     (build-system gnu-build-system)
 127     (inputs
 128      `(("hwloc" ,hwloc "lib")
 129        ("gfortran" ,gfortran)
 130        ("libfabric" ,libfabric)
 131        ,@(match (%current-system)
 132                 ((member (package-supported-systems psm))
 133                  `(("psm" ,psm)))
 134                 (_ `()))
 135        ("rdma-core" ,rdma-core)
 136        ("valgrind" ,valgrind)))
 137     (native-inputs
 138      `(("pkg-config" ,pkg-config)
 139        ("perl" ,perl)))
 140     (outputs '("out" "debug"))
 141     (arguments
 142      `(#:configure-flags `("--enable-mpi-ext=affinity" ;cr doesn't work
 143                            "--enable-memchecker"
 144                            "--with-sge"
 145
 146                            ;; VampirTrace is obsoleted by scorep and disabling
 147                            ;; it reduces the closure size considerably.
 148                            "--disable-vt"
 149
 150                            ,(string-append "--with-valgrind="
 151                                            (assoc-ref %build-inputs "valgrind"))
 152                            ,(string-append "--with-hwloc="
 153                                            (assoc-ref %build-inputs "hwloc")))
 154        #:phases (modify-phases %standard-phases
 155                   (add-before 'build 'remove-absolute
 156                     (lambda _
 157                       ;; Remove compiler absolute file names (OPAL_FC_ABSOLUTE
 158                       ;; etc.) to reduce the closure size.  See
 159                       ;; <https://lists.gnu.org/archive/html/guix-devel/2017-07/msg00388.html>
 160                       ;; and
 161                       ;; <https://www.mail-archive.com/users@lists.open-mpi.org//msg31397.html>.
 162                       (substitute* '("orte/tools/orte-info/param.c"
 163                                      "oshmem/tools/oshmem_info/param.c"
 164                                      "ompi/tools/ompi_info/param.c")
 165                         (("_ABSOLUTE") ""))
 166                       ;; Avoid valgrind (which pulls in gdb etc.).
 167                       (substitute*
 168                           '("./ompi/mca/io/romio/src/io_romio_component.c")
 169                         (("MCA_io_romio_COMPLETE_CONFIGURE_FLAGS")
 170                          "\"[elided to reduce closure]\""))
 171                       #t))
 172                   (add-before 'build 'scrub-timestamps ;reproducibility
 173                     (lambda _
 174                       (substitute* '("ompi/tools/ompi_info/param.c"
 175                                      "orte/tools/orte-info/param.c"
 176                                      "oshmem/tools/oshmem_info/param.c")
 177                         ((".*(Built|Configured) on.*") ""))
 178                       #t))
 179                   (add-after 'install 'remove-logs ;reproducibility
 180                     (lambda* (#:key outputs #:allow-other-keys)
 181                       (let ((out (assoc-ref outputs "out")))
 182                         (for-each delete-file (find-files out "config.log"))
 183                         #t))))))
 184     (home-page "http://www.open-mpi.org")
 185     (synopsis "MPI-3 implementation")
 186     (description
 187      "The Open MPI Project is an MPI-3 implementation that is developed and
 188 maintained by a consortium of academic, research, and industry partners.  Open
 189 MPI is therefore able to combine the expertise, technologies, and resources
 190 from all across the High Performance Computing community in order to build the
 191 best MPI library available.  Open MPI offers advantages for system and
 192 software vendors, application developers and computer science researchers.")
 193     ;; See file://LICENSE
 194     (license bsd-2)))
 195
 196 (define-public openmpi-thread-multiple
 197   (package
 198     (inherit openmpi)
 199     (name "openmpi-thread-multiple")
 200     (arguments
 201      (substitute-keyword-arguments (package-arguments openmpi)
 202        ((#:configure-flags flags)
 203         `(cons "--enable-mpi-thread-multiple" ,flags))))
 204     (description " This version of Open@tie{}MPI has an implementation of
 205 @code{MPI_Init_thread} that provides @code{MPI_THREAD_MULTIPLE}.  This won't
 206 work correctly with all transports (such as @code{openib}), and the
 207 performance is generally worse than the vanilla @code{openmpi} package, which
 208 only provides @code{MPI_THREAD_FUNNELED}.")))