gnu/packages/graphviz.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015 Efraim Flashner <efraim@flashner.co.il>
   4 ;;; Copyright © 2016 Theodoros Foradis <theodoros@foradis.org>
   5 ;;; Copyright © 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
   6 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
   7 ;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
   8 ;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org>
   9 ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com>
  10 ;;;
  11 ;;; This file is part of GNU Guix.
  12 ;;;
  13 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  14 ;;; under the terms of the GNU General Public License as published by
  15 ;;; the Free Software Foundation; either version 3 of the License, or (at
  16 ;;; your option) any later version.
  17 ;;;
  18 ;;; GNU Guix is distributed in the hope that it will be useful, but
  19 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  20 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  21 ;;; GNU General Public License for more details.
  22 ;;;
  23 ;;; You should have received a copy of the GNU General Public License
  24 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  25
  26 (define-module (gnu packages graphviz)
  27   #:use-module (guix packages)
  28   #:use-module (guix build-system gnu)
  29   #:use-module (guix build-system python)
  30   #:use-module (guix download)
  31   #:use-module (guix git-download)
  32   #:use-module (guix utils)
  33   #:use-module (gnu packages autotools)
  34   #:use-module (gnu packages bison)
  35   #:use-module (gnu packages check)
  36   #:use-module (gnu packages compression)
  37   #:use-module (gnu packages flex)
  38   #:use-module (gnu packages fontutils)
  39   #:use-module (gnu packages gd)
  40   #:use-module (gnu packages glib)
  41   #:use-module (gnu packages gnome)
  42   #:use-module (gnu packages gtk)
  43   #:use-module (gnu packages guile)
  44   #:use-module (gnu packages image)
  45   #:use-module (gnu packages perl)
  46   #:use-module (gnu packages pkg-config)
  47   #:use-module (gnu packages python)
  48   #:use-module (gnu packages python-xyz)
  49   #:use-module (gnu packages swig)
  50   #:use-module (gnu packages tcl)
  51   #:use-module (gnu packages tex)
  52   #:use-module (gnu packages xml)
  53   #:use-module (gnu packages xorg)
  54   #:use-module ((guix licenses) #:prefix license:))
  55
  56 (define-public graphviz
  57   (package
  58     (name "graphviz")
  59     (version "2.42.3")
  60     (source (origin
  61               (method url-fetch)
  62               (uri (string-append
  63                     "https://www2.graphviz.org/Packages/stable/portable_source/"
  64                     "graphviz-" version ".tar.gz"))
  65               (sha256
  66                (base32
  67                 "1pbswjbx3fjdlsxcm7cmlsl5bvaa3d6gcnr0cr8x3c8pag13zbwg"))))
  68     (build-system gnu-build-system)
  69     (arguments
  70      ;; FIXME: rtest/rtest.sh is a ksh script (!).  Add ksh as an input.
  71      '(#:tests? #f
  72        #:phases
  73        (modify-phases %standard-phases
  74          (add-after 'install 'move-docs
  75            (lambda* (#:key outputs #:allow-other-keys)
  76              (let ((out (assoc-ref outputs "out"))
  77                    (doc (assoc-ref outputs "doc")))
  78                (mkdir-p (string-append doc "/share/graphviz"))
  79                (rename-file (string-append out "/share/graphviz/doc")
  80                             (string-append doc "/share/graphviz/doc"))
  81                #t)))
  82          (add-after 'move-docs 'move-guile-bindings
  83            (lambda* (#:key outputs #:allow-other-keys)
  84              (let* ((out (assoc-ref outputs "out"))
  85                     (lib (string-append out "/lib"))
  86                     (extdir (string-append lib
  87                                            "/guile/2.0/extensions")))
  88                (mkdir-p extdir)
  89                (rename-file (string-append
  90                              lib "/graphviz/guile/libgv_guile.so")
  91                             (string-append extdir
  92                                            "/libgv_guile.so"))
  93                #t))))))
  94     (inputs
  95      `(("libXrender" ,libxrender)
  96        ("libX11" ,libx11)
  97        ("gts" ,gts)
  98        ("gd" ,gd)                                 ; FIXME: Our GD is too old
  99        ("guile" ,guile-2.0)                       ;Guile bindings
 100        ("swig" ,swig)
 101        ("pango" ,pango)
 102        ("fontconfig" ,fontconfig)
 103        ("freetype" ,freetype)
 104        ("libltdl" ,libltdl)
 105        ("libXaw" ,libxaw)
 106        ("expat" ,expat)
 107        ("libjpeg" ,libjpeg-turbo)
 108        ("libpng" ,libpng)))
 109     (native-inputs
 110      `(("bison" ,bison)
 111        ("pkg-config" ,pkg-config)))
 112     (outputs '("out" "doc"))                      ; 5 MiB of html + pdfs
 113     (home-page "http://www.graphviz.org/")
 114     (synopsis "Graph visualization software")
 115     (description
 116      "Graphviz is a graph visualization tool suite.  Graph visualization is a
 117 way of representing structural information as diagrams of abstract graphs and
 118 networks.  It has important applications in networking, bioinformatics,
 119 software engineering, database and web design, machine learning, and in visual
 120 interfaces for other technical domains.")
 121     (license license:epl1.0)))
 122
 123 ;; Older Graphviz needed for pygraphviz.  See
 124 ;; https://github.com/pygraphviz/pygraphviz/issues/175
 125 (define-public graphviz-2.38
 126   ;; This commit corresponds to the changelog change for version 2.38.0.
 127   ;; There are no tags.
 128   (let ((commit "f54ac2c9313ae80ccf76ef4ac6aa9be820a23126")
 129         (revision "1"))
 130     (package (inherit graphviz)
 131       (name "graphviz")
 132       (version (git-version "2.38.0" revision commit))
 133       (source (origin
 134                 (method git-fetch)
 135                 (uri (git-reference
 136                       (url "https://gitlab.com/graphviz/graphviz.git")
 137                       (commit commit)))
 138                 (file-name (git-file-name name version))
 139                 (sha256
 140                  (base32
 141                   "1vjg308gflmi1khgjmcj431cnkrlv12bg4cqah39mwhny92jy92x"))))
 142       (arguments
 143        (substitute-keyword-arguments (package-arguments graphviz)
 144          ((#:phases phases)
 145           `(modify-phases ,phases
 146              (add-after 'unpack 'prepare-bootstrap
 147                (lambda _
 148                  (substitute* "autogen.sh"
 149                    (("/bin/sh") (which "sh"))
 150                    (("\\$GRAPHVIZ_VERSION_DATE") "0"))
 151                  (setenv "CONFIG_SHELL" (which "sh"))
 152                  (setenv "SHELL" (which "sh"))
 153
 154                  (map make-file-writable (find-files "." ".*"))
 155                  #t))
 156              (replace 'bootstrap
 157                (lambda _ (invoke (which "sh") "autogen.sh" "NOCONFIG") #t))))))
 158       (native-inputs
 159        `(("autoconf" ,autoconf)
 160          ("automake" ,automake)
 161          ("libtool" ,libtool)
 162          ("flex" ,flex)
 163          ("perl" ,perl)
 164          ("tcl" ,tcl)
 165          ,@(package-native-inputs graphviz))))))
 166
 167 (define-public python-graphviz
 168   (package
 169     (name "python-graphviz")
 170     (version "0.13.2")
 171     (source (origin
 172               (method url-fetch)
 173               (uri (pypi-uri "graphviz" version ".zip"))
 174               (sha256
 175                (base32
 176                 "009alrilzx0v7kl41khbq7k6k8b8pxyvbsi1b1ai933f6kpbxb30"))))
 177     (build-system python-build-system)
 178     (arguments
 179      '(#:phases (modify-phases %standard-phases
 180                   (replace 'check
 181                     (lambda* (#:key tests #:allow-other-keys)
 182                       (if tests
 183                           (invoke "pytest" "-vv")
 184                           (format #t "test suite not run~%"))
 185                       #t)))))
 186     (native-inputs
 187      `(("unzip" ,unzip)
 188
 189        ;; For tests.
 190        ("graphviz" ,graphviz)
 191        ("python-mock" ,python-mock)
 192        ("python-pytest" ,python-pytest)
 193        ("python-pytest-cov" ,python-pytest-cov)
 194        ("python-pytest-mock" ,python-pytest-mock)))
 195     (home-page "https://github.com/xflr6/graphviz")
 196     (synopsis "Simple Python interface for Graphviz")
 197     (description
 198      "This package provides a simple Python interface for the Graphviz graph
 199 visualization tool suite.")
 200     (license license:expat)))
 201
 202 (define-public python2-graphviz
 203   (package-with-python2 python-graphviz))
 204
 205 (define-public python-pygraphviz
 206   (package
 207     (name "python-pygraphviz")
 208     (version "1.5")
 209     (source
 210      (origin
 211        (method git-fetch)
 212        (uri (git-reference
 213              (url "https://github.com/pygraphviz/pygraphviz.git")
 214              (commit (string-append "pygraphviz-" version))))
 215        (file-name (string-append "pygraphviz-" version "-checkout"))
 216        (sha256
 217         (base32
 218          "1yldym38m8ckgflln83i88143pd9fjj1vfp23sq39fs6np5g0nzp"))))
 219     (build-system python-build-system)
 220     (arguments
 221      `(#:configure-flags
 222        (let ((graphviz (assoc-ref %build-inputs "graphviz")))
 223          (list (string-append "--include-path=" graphviz "/include")
 224                (string-append "--library-path=" graphviz "/lib")))))
 225     (inputs
 226      `(("graphviz" ,graphviz-2.38)))
 227     (native-inputs
 228      `(("python-nose" ,python-nose)
 229        ("python-mock" ,python-mock)
 230        ("python-doctest-ignore-unicode" ,python-doctest-ignore-unicode)))
 231     (home-page "http://pygraphviz.github.io")
 232     (synopsis "Python interface to Graphviz")
 233     (description "PyGraphviz is a Python interface to the Graphviz graph
 234 layout and visualization package.  With PyGraphviz you can create, edit, read,
 235 write, and draw graphs using Python to access the Graphviz graph data
 236 structure and layout algorithms.")
 237     (license license:bsd-3)))
 238
 239 (define-public gts
 240   (package
 241     (name "gts")
 242     (version "0.7.6")
 243     (source (origin
 244              (method url-fetch)
 245              (uri (string-append "mirror://sourceforge/gts/gts/" version
 246                                  "/gts-" version ".tar.gz"))
 247              (sha256
 248               (base32
 249                "07mqx09jxh8cv9753y2d2jsv7wp8vjmrd7zcfpbrddz3wc9kx705"))))
 250     (build-system gnu-build-system)
 251     (arguments
 252      '(#:phases
 253        (modify-phases %standard-phases
 254          (add-before 'check 'pre-check
 255            (lambda _
 256              (chmod "test/boolean/test.sh" #o777)
 257              #t)))
 258
 259        ;; Some data files used by the test suite are missing.
 260        ;; See <http://sourceforge.net/p/gts/bugs/41/>.
 261        #:tests? #f))
 262     (native-inputs
 263      `(("pkg-config" ,pkg-config)))
 264     (propagated-inputs
 265      ;; The gts.pc file has glib-2.0 as required.
 266      `(("glib" ,glib)))
 267     (home-page "http://gts.sourceforge.net/")
 268
 269     ;; Note: Despite the name, this is not official GNU software.
 270     (synopsis "Triangulated Surface Library")
 271     (description
 272      "Library intended to provide a set of useful functions to deal with
 273 3D surfaces meshed with interconnected triangles.")
 274     (license license:lgpl2.0+)))
 275
 276 (define-public xdot
 277   (package
 278     (name "xdot")
 279     (version "1.1")
 280     (source
 281      (origin
 282       (method url-fetch)
 283       (uri (pypi-uri "xdot" version))
 284       (sha256
 285        (base32
 286         "0cr4rh7dz4dfzyxrk5pzhm0d15gkrgkfp3i5lw178xy81pc56p71"))))
 287     (build-system python-build-system)
 288     (arguments
 289      `(#:phases
 290        (modify-phases %standard-phases
 291          ;; We wrap xdot, so that we don't propagate gtk+ and graphviz
 292          (add-after 'install 'wrap
 293            (lambda* (#:key inputs outputs #:allow-other-keys)
 294              (wrap-program (string-append (assoc-ref outputs "out") "/bin/xdot")
 295                `("GI_TYPELIB_PATH" ":" prefix
 296                  (,(string-append
 297                     (assoc-ref inputs "gtk+") "/lib/girepository-1.0"
 298                     ":" (assoc-ref inputs "pango") "/lib/girepository-1.0"
 299                     ":" (assoc-ref inputs "gdk-pixbuf") "/lib/girepository-1.0"
 300                     ":" (assoc-ref inputs "atk") "/lib/girepository-1.0")))
 301                `("PATH" ":" prefix
 302                  (,(string-append (assoc-ref inputs "graphviz") "/bin"))))
 303              #t)))))
 304     (inputs
 305      `(("atk" ,atk)
 306        ("gdk-pixbuf" ,gdk-pixbuf+svg)
 307        ("graphviz" ,graphviz)
 308        ("gtk+" ,gtk+)
 309        ("python-pycairo" ,python-pycairo)
 310        ("python-pygobject" ,python-pygobject)))
 311     (home-page "https://pypi.org/project/xdot/")
 312     (synopsis "Interactive viewer for graphviz dot files")
 313     (description "Xdot is an interactive viewer for graphs written in
 314 @code{graphviz}’s dot language.  Internally, it uses the xdot output format as
 315 an intermediate format,and @code{gtk} and @code{cairo} for rendering.  Xdot can
 316 be used either as a standalone application, or as a python library.")
 317     (license license:lgpl3+)))
 318
 319 (define-public python-pydot
 320   (package
 321     (name "python-pydot")
 322     (version "1.2.4")
 323     (source
 324      (origin
 325        (method url-fetch)
 326        (uri (pypi-uri "pydot" version))
 327        (sha256
 328         (base32
 329          "1dhy4jpp646jslh2yks6klwwbaxcs905byyny880gl1iap8y5llj"))))
 330     (build-system python-build-system)
 331     (native-inputs
 332      ;; For tests.
 333      `(("python-chardet" ,python-chardet)))
 334     (propagated-inputs
 335      `(("python-pyparsing" ,python-pyparsing)))
 336     (home-page "https://github.com/erocarrera/pydot")
 337     (synopsis "Python interface to Graphviz's DOT language")
 338     (description
 339      "Pydot provides an interface to create, handle, modify and process
 340 graphs in Graphviz's DOT language, written in pure Python.")
 341     (license license:expat)))
 342
 343 (define-public python2-pydot
 344   (package-with-python2 python-pydot))
 345
 346 (define-public dot2tex
 347   (package
 348     (name "dot2tex")
 349     (version "2.11.3")
 350     (source (origin
 351               (method url-fetch)
 352               (uri (pypi-uri "dot2tex" version))
 353               (sha256
 354                (base32
 355                 "1kp77wiv7b5qib82i3y3sn9r49rym43aaqm5aw1bwnzfbbq2m6i9"))))
 356     (build-system python-build-system)
 357     (arguments
 358      `(#:python ,python-2))
 359     (inputs
 360      `(("texlive-latex-preview" ,texlive-latex-preview)
 361        ("graphviz" ,graphviz)))
 362     (propagated-inputs
 363      `(("python-pyparsing" ,python2-pyparsing)))
 364     (home-page "https://github.com/kjellmf/dot2tex")
 365     (synopsis "Graphviz to LaTeX converter")
 366     (description
 367      "The purpose of @code{dot2tex} is to give graphs generated by Graphviz a
 368 more LaTeX friendly look and feel.  This is accomplished by converting
 369 @code{xdot} output from Graphviz to a series of PSTricks or PGF/TikZ commands.
 370 This approach allows:
 371
 372 @itemize @bullet
 373 @item Typesetting labels with LaTeX, allowing mathematical notation
 374 @item Using native PSTricks and PGF/TikZ commands for drawing arrows
 375 @item Using backend specific styles to customize the output
 376 @end itemize")
 377     (license license:expat)))