gnu/packages/python-science.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2015, 2016, 2020, 2021 Ricardo Wurmus <rekado@elephly.net>
   3 ;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch>
   4 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
   5 ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
   6 ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
   7 ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Marius Bakke <mbakke@fastmail.com>
   8 ;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
   9 ;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
  10 ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org>
  11 ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com>
  12 ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
  13 ;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
  14 ;;;
  15 ;;; This file is part of GNU Guix.
  16 ;;;
  17 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  18 ;;; under the terms of the GNU General Public License as published by
  19 ;;; the Free Software Foundation; either version 3 of the License, or (at
  20 ;;; your option) any later version.
  21 ;;;
  22 ;;; GNU Guix is distributed in the hope that it will be useful, but
  23 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  24 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  25 ;;; GNU General Public License for more details.
  26 ;;;
  27 ;;; You should have received a copy of the GNU General Public License
  28 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  29
  30 (define-module (gnu packages python-science)
  31   #:use-module ((guix licenses) #:prefix license:)
  32   #:use-module (gnu packages)
  33   #:use-module (gnu packages base)
  34   #:use-module (gnu packages check)
  35   #:use-module (gnu packages gcc)
  36   #:use-module (gnu packages maths)
  37   #:use-module (gnu packages perl)
  38   #:use-module (gnu packages python)
  39   #:use-module (gnu packages python-web)
  40   #:use-module (gnu packages python-xyz)
  41   #:use-module (gnu packages sphinx)
  42   #:use-module (gnu packages time)
  43   #:use-module (gnu packages xdisorg)
  44   #:use-module (gnu packages xml)
  45   #:use-module (gnu packages xorg)
  46   #:use-module (guix packages)
  47   #:use-module (guix download)
  48   #:use-module (guix utils)
  49   #:use-module (guix build-system python))
  50
  51 (define-public python-scipy
  52   (package
  53     (name "python-scipy")
  54     (version "1.6.0")
  55     (source
  56      (origin
  57        (method url-fetch)
  58        (uri (pypi-uri "scipy" version))
  59        (sha256
  60         (base32 "0rh5b1rwdcvvagld8vpxnpaibszy1skpx39a0fwzd5gx5pwcjvfb"))))
  61     (build-system python-build-system)
  62     (propagated-inputs
  63      `(("python-numpy" ,python-numpy)
  64        ("python-matplotlib" ,python-matplotlib)
  65        ("python-pyparsing" ,python-pyparsing)))
  66     (inputs
  67      `(("lapack" ,lapack)
  68        ("openblas" ,openblas)
  69        ("pybind11" ,pybind11)))
  70     (native-inputs
  71      `(("python-cython" ,python-cython)
  72        ("python-pytest" ,python-pytest)
  73        ("python-sphinx" ,python-sphinx)
  74        ("python-numpydoc" ,python-numpydoc)
  75        ("gfortran" ,gfortran)
  76        ("perl" ,perl)
  77        ("which" ,which)))
  78     (outputs '("out" "doc"))
  79     (arguments
  80      `(#:phases
  81        (modify-phases %standard-phases
  82          (add-before 'build 'change-home-dir
  83            (lambda _
  84              ;; Change from /homeless-shelter to /tmp for write permission.
  85              (setenv "HOME" "/tmp")
  86              #t))
  87          (add-after 'unpack 'disable-broken-tests
  88            (lambda _
  89              (substitute* "scipy/sparse/linalg/dsolve/tests/test_linsolve.py"
  90                (("^( +)def test_threads_parallel\\(self\\):" m indent)
  91                 (string-append indent
  92                                "@pytest.mark.skip(reason=\"Disabled by Guix\")\n"
  93                                m)))
  94              (substitute* "scipy/sparse/linalg/eigen/arpack/tests/test_arpack.py"
  95                (("^def test_parallel_threads\\(\\):" m)
  96                 (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n"
  97                                m)))
  98              #t))
  99          (add-before 'build 'configure-openblas
 100            (lambda* (#:key inputs #:allow-other-keys)
 101              (call-with-output-file "site.cfg"
 102                (lambda (port)
 103                  (format port
 104                          "[blas]
 105 libraries = openblas
 106 library_dirs = ~a/lib
 107 include_dirs = ~a/include
 108
 109 # backslash-n to make emacs happy
 110 \n[atlas]
 111 library_dirs = ~a/lib
 112 atlas_libs = openblas
 113 "
 114                          (assoc-ref inputs "openblas")
 115                          (assoc-ref inputs "openblas")
 116                          (assoc-ref inputs "openblas"))))
 117              #t))
 118          (add-after 'install 'install-doc
 119            (lambda* (#:key inputs outputs #:allow-other-keys)
 120              (let* ((data (string-append (assoc-ref outputs "doc") "/share"))
 121                     (doc (string-append data "/doc/" ,name "-" ,version))
 122                     (html (string-append doc "/html"))
 123                     (pyver ,(string-append "PYVER=" (version-major+minor
 124                                                      (package-version python))))
 125                     ;; By default it tries to run sphinx-build through the Python
 126                     ;; interpreter which won't work with our shell wrapper.
 127                     (sphinxbuild "SPHINXBUILD=LANG=C sphinx-build"))
 128                ;; Make installed package available for building the
 129                ;; documentation
 130                (add-installed-pythonpath inputs outputs)
 131                (with-directory-excursion "doc"
 132                  ;; Fix generation of images for mathematical expressions.
 133                  (substitute* (find-files "source" "conf\\.py")
 134                    (("pngmath_use_preview = True")
 135                     "pngmath_use_preview = False"))
 136                  (mkdir-p html)
 137                  (invoke "make" "html" pyver sphinxbuild)
 138                  (with-directory-excursion "build/html"
 139                    (for-each (lambda (file)
 140                                (let* ((dir (dirname file))
 141                                       (tgt-dir (string-append html "/" dir)))
 142                                  (install-file file html)))
 143                              (find-files "." ".*")))))
 144              #t))
 145          ;; Tests can only be run after the library has been installed and not
 146          ;; within the source directory.
 147          (delete 'check)
 148          (add-after 'install 'check
 149            (lambda* (#:key inputs outputs #:allow-other-keys)
 150              (add-installed-pythonpath inputs outputs)
 151              (with-directory-excursion "/tmp"
 152                (invoke "python" "-c"
 153                        "import scipy; scipy.test(verbose=2)")))))))
 154     (home-page "https://www.scipy.org/")
 155     (synopsis "The Scipy library provides efficient numerical routines")
 156     (description "The SciPy library is one of the core packages that make up
 157 the SciPy stack.  It provides many user-friendly and efficient numerical
 158 routines such as routines for numerical integration and optimization.")
 159     (properties `((python2-variant . ,(delay python2-scipy))))
 160     (license license:bsd-3)))
 161
 162 ;; Version 1.2.2 is the last version to support Python 2
 163 (define-public python2-scipy
 164   (package
 165     (inherit (package-with-python2
 166               (strip-python2-variant python-scipy)))
 167     (version "1.2.2")
 168     (source
 169      (origin
 170        (method url-fetch)
 171        (uri (pypi-uri "scipy" version))
 172        (sha256
 173         (base32
 174          "1cgvgin8fvckv96hjh3ikmwkra5rif51bdb75ifzf7xbil5iwcx4"))))))
 175
 176 (define-public python2-weave
 177   (package
 178     (name "python2-weave")
 179     (version "0.16.0")
 180     (source
 181      (origin
 182        (method url-fetch)
 183        (uri (pypi-uri "weave" version))
 184        (sha256
 185         (base32 "0jnm3584mfichgwgrd1gk5i42ll9c08nkw9716n947n4338f6ghs"))))
 186     (build-system python-build-system)
 187     (arguments
 188      `(#:python ,python-2
 189        #:phases
 190        (modify-phases %standard-phases
 191          (replace 'check
 192            (lambda _
 193              (invoke "nosetests" "-v"
 194                      "--exclude"
 195                      "test_(user|incorrect_ownership|char_fail|obj_fail)"))))))
 196     (propagated-inputs
 197      `(("python-numpy" ,python2-numpy)))
 198     (native-inputs
 199      `(("python-nose" ,python2-nose)))
 200     (home-page "https://www.scipy.org/")
 201     (synopsis "Tools for including C/C++ code within Python code")
 202     (description "Weave is the stand-alone version of the obsolete Scipy
 203 submodule @code{scipy.weave}.  It is Python 2.x only, and is provided for
 204 users that need new versions of Scipy but have existing code that still
 205 depends on @code{scipy.weave}.  For new code, users are recommended to use
 206 Cython.")
 207     (license license:bsd-3)))
 208
 209 (define-public python-scikit-fuzzy
 210   (package
 211     (name "python-scikit-fuzzy")
 212     (version "0.4.2")
 213     (source
 214      (origin
 215        (method url-fetch)
 216        (uri (pypi-uri "scikit-fuzzy" version))
 217        (sha256
 218         (base32 "0bp1n771fj44kdp7a00bcvfwirvv2rc803b7g6yf3va7v0j29c8s"))))
 219     (build-system python-build-system)
 220     (arguments
 221      `(#:phases
 222        (modify-phases %standard-phases
 223          (replace 'check
 224            (lambda _
 225              (invoke "nosetests" "-s" "-v" "skfuzzy")
 226              #t)))))
 227     (native-inputs
 228      `(("python-nose" ,python-nose)))
 229     (propagated-inputs
 230      `(("python-networkx" ,python-networkx)
 231        ("python-numpy" ,python-numpy)
 232        ("python-scipy" ,python-scipy)))
 233     (home-page "https://github.com/scikit-fuzzy/scikit-fuzzy")
 234     (synopsis "Fuzzy logic toolkit for SciPy")
 235     (description
 236      "This package implements many useful tools for projects involving fuzzy
 237 logic, also known as grey logic.")
 238     (license license:bsd-3)))
 239
 240 (define-public python-scikit-image
 241   (package
 242     (name "python-scikit-image")
 243     (version "0.17.2")
 244     (source
 245      (origin
 246        (method url-fetch)
 247        (uri (pypi-uri "scikit-image" version))
 248        (sha256
 249         (base32 "1cyqqbcbrg3prc36wis0sm3q5rjhd7h9bp33jwfyixzhi02lr5dx"))))
 250     (build-system python-build-system)
 251     (arguments
 252      ;; TODO: Some tests require running X11 server. Disable them?
 253      '(#:tests? #f))
 254     ;; See DEPENDS.txt for the list of build and run time requiremnts
 255     (propagated-inputs
 256      `(("python-cloudpickle" ,python-cloudpickle)
 257        ("python-dask" ,python-dask)
 258        ("python-imageio" ,python-imageio)
 259        ("python-matplotlib" ,python-matplotlib)
 260        ("python-networkx" ,python-networkx)
 261        ("python-numpy" ,python-numpy)
 262        ("python-pillow" ,python-pillow)
 263        ("python-pywavelets" ,python-pywavelets)
 264        ("python-scipy" ,python-scipy)
 265        ("python-six" ,python-six)
 266        ("python-tifffile" ,python-tifffile)))
 267     (native-inputs
 268      `(("python-cython" ,python-cython)))
 269     (home-page "https://scikit-image.org/")
 270     (synopsis "Image processing in Python")
 271     (description
 272      "Scikit-image is a collection of algorithms for image processing.")
 273     (license license:bsd-3)))
 274
 275 (define-public python-sgp4
 276   (package
 277     (name "python-sgp4")
 278     (version "2.12")
 279     (source
 280      (origin
 281        (method url-fetch)
 282        (uri (pypi-uri "sgp4" version))
 283        (sha256
 284         (base32 "0dncp9i5b6afkg7f8mj9j0qzsp008b8v73yc0qkmizhpns7mvwvx"))))
 285     (build-system python-build-system)
 286     (propagated-inputs
 287      `(("python-numpy" ,python-numpy)))
 288     (home-page "https://github.com/brandon-rhodes/python-sgp4")
 289     (synopsis "Track earth satellite TLE orbits using SGP4")
 290     (description
 291      "This package provides a Python implementation of the most recent version
 292 of the SGP4 satellite tracking algorithm.")
 293     (license license:expat)))
 294
 295 (define-public python-pandas
 296   (package
 297     (name "python-pandas")
 298     (version "1.0.5")
 299     (source
 300      (origin
 301        (method url-fetch)
 302        (uri (pypi-uri "pandas" version))
 303        (sha256
 304         (base32 "1a2gv3g6jr6vb5ca43fkwjl5xf86wpfz8y3zcy787adjl0hdkib9"))))
 305     (build-system python-build-system)
 306     (arguments
 307      `(#:modules ((guix build utils)
 308                   (guix build python-build-system)
 309                   (ice-9 ftw)
 310                   (srfi srfi-26))
 311        #:phases (modify-phases %standard-phases
 312                   (add-after 'unpack 'patch-which
 313                     (lambda* (#:key inputs #:allow-other-keys)
 314                       (let ((which (assoc-ref inputs "which")))
 315                         (substitute* "pandas/io/clipboard/__init__.py"
 316                           (("^WHICH_CMD = .*")
 317                            (string-append "WHICH_CMD = \"" which "\"\n"))))
 318                       #t))
 319                   (add-before 'check 'prepare-x
 320                     (lambda _
 321                       (system "Xvfb &")
 322                       (setenv "DISPLAY" ":0")
 323                       ;; xsel needs to write a log file.
 324                       (setenv "HOME" "/tmp")
 325                       #t))
 326                   (replace 'check
 327                     (lambda _
 328                       (let ((build-directory
 329                              (string-append
 330                               (getcwd) "/build/"
 331                               (car (scandir "build"
 332                                             (cut string-prefix? "lib." <>))))))
 333                         ;; Disable the "strict data files" option which causes
 334                         ;; the build to error out if required data files are
 335                         ;; not available (as is the case with PyPI archives).
 336                         (substitute* "setup.cfg"
 337                           (("addopts = --strict-data-files") "addopts = "))
 338                         (with-directory-excursion build-directory
 339                           (invoke "pytest" "-vv" "pandas" "--skip-slow"
 340                                   "--skip-network"))))))))
 341     (propagated-inputs
 342      `(("python-jinja2" ,python-jinja2)
 343        ("python-numpy" ,python-numpy)
 344        ("python-openpyxl" ,python-openpyxl)
 345        ("python-pytz" ,python-pytz)
 346        ("python-dateutil" ,python-dateutil)
 347        ("python-xlrd" ,python-xlrd)))
 348     (inputs
 349      `(("which" ,which)
 350        ("xclip" ,xclip)
 351        ("xsel" ,xsel)))
 352     (native-inputs
 353      `(("python-cython" ,python-cython)
 354        ("python-beautifulsoup4" ,python-beautifulsoup4)
 355        ("python-lxml" ,python-lxml)
 356        ("python-html5lib" ,python-html5lib)
 357        ("python-nose" ,python-nose)
 358        ("python-pytest" ,python-pytest)
 359        ("python-pytest-mock" ,python-pytest-mock)
 360        ;; Needed to test clipboard support.
 361        ("xorg-server" ,xorg-server-for-tests)))
 362     (home-page "https://pandas.pydata.org")
 363     (synopsis "Data structures for data analysis, time series, and statistics")
 364     (description
 365      "Pandas is a Python package providing fast, flexible, and expressive data
 366 structures designed to make working with structured (tabular,
 367 multidimensional, potentially heterogeneous) and time series data both easy
 368 and intuitive.  It aims to be the fundamental high-level building block for
 369 doing practical, real world data analysis in Python.")
 370     (properties `((python2-variant . ,(delay python2-pandas))))
 371     (license license:bsd-3)))
 372
 373 (define-public python-pandas-0.25
 374   (package
 375     (inherit python-pandas)
 376     (version "0.25.3")
 377     (source (origin
 378               (method url-fetch)
 379               (uri (pypi-uri "pandas" version))
 380               (sha256
 381                (base32
 382                 "191048m6kdc6yfvqs9w412lq60cfvigrsb57y0x116lwibgp9njj"))))
 383     (arguments
 384      (substitute-keyword-arguments (package-arguments python-pandas)
 385        ((#:phases phases)
 386         `(modify-phases ,phases
 387            (replace 'patch-which
 388              (lambda* (#:key inputs #:allow-other-keys)
 389                (let ((which (assoc-ref inputs "which")))
 390                  (substitute* "pandas/io/clipboard/__init__.py"
 391                    (("^CHECK_CMD = .*")
 392                      (string-append "CHECK_CMD = \"" which "\"\n"))))
 393                #t))
 394            (delete 'prepare-x)))))))
 395
 396 ;; Pandas 0.24.x are the last versions that support Python 2.
 397 (define-public python2-pandas
 398   (let ((pandas (package-with-python2
 399                  (strip-python2-variant python-pandas-0.25))))
 400     (package
 401       (inherit pandas)
 402       (version "0.24.2")
 403       (source (origin
 404                 (method url-fetch)
 405                 (uri (pypi-uri "pandas" version))
 406                 (sha256
 407                  (base32
 408                   "18imlm8xbhcbwy4wa957a1fkamrcb0z988z006jpfda3ki09z4ag"))
 409                 (modules '((guix build utils)))
 410                 (snippet
 411                  '(begin
 412                     ;; Adjust for renamed error message in Python 2.7.17.  Taken
 413                     ;; from <https://github.com/pandas-dev/pandas/pull/29294>.
 414                     (substitute* "pandas/io/parsers.py"
 415                       (("if 'NULL byte' in msg:")
 416                        "if 'NULL byte' in msg or 'line contains NUL' in msg:"))
 417                     #t)))))))
 418
 419 (define-public python-bottleneck
 420   (package
 421     (name "python-bottleneck")
 422     (version "1.3.2")
 423     (source
 424      (origin
 425        (method url-fetch)
 426        (uri (pypi-uri "Bottleneck" version))
 427        (sha256
 428         (base32 "0wz5320jx3n4q2nsvwvc7cpi66b46qbals9v53m955rmcq5ry5r0"))))
 429     (build-system python-build-system)
 430     (arguments
 431      `(#:phases
 432        (modify-phases %standard-phases
 433          (replace 'check
 434            (lambda _
 435              (invoke "python" "setup.py" "pytest"))))))
 436     (native-inputs
 437      `(("python-hypothesis" ,python-hypothesis)
 438        ("python-pytest" ,python-pytest)
 439        ("python-pytest-runner" ,python-pytest-runner)))
 440     (propagated-inputs
 441      `(("python-numpy" ,python-numpy)))
 442     (home-page "https://github.com/pydata/bottleneck")
 443     (synopsis "Fast NumPy array functions written in C")
 444     (description
 445      "Bottleneck is a collection of fast, NaN-aware NumPy array functions
 446 written in C.")
 447     (license license:bsd-2)))
 448
 449 (define-public python-baycomp
 450   (package
 451     (name "python-baycomp")
 452     (version "1.0.2")
 453     (source
 454      (origin
 455        (method url-fetch)
 456        (uri (pypi-uri "baycomp" version))
 457        (sha256
 458         (base32 "1c1354a7b3g8slychjgyjxqdm8z40z9kviyl9n4g9kfpdg0p4d64"))))
 459     (build-system python-build-system)
 460     (propagated-inputs
 461      `(("python-matplotlib" ,python-matplotlib)
 462        ("python-numpy" ,python-numpy)
 463        ("python-scipy" ,python-scipy)))
 464     (home-page "https://github.com/janezd/baycomp")
 465     (synopsis "Library for comparison of Bayesian classifiers")
 466     (description
 467      "Baycomp is a library for Bayesian comparison of classifiers.  Functions
 468 in the library compare two classifiers on one or on multiple data sets.  They
 469 compute three probabilities: the probability that the first classifier has
 470 higher scores than the second, the probability that differences are within the
 471 region of practical equivalence (rope), or that the second classifier has
 472 higher scores.")
 473     (license license:expat)))
 474
 475 (define-public python-xarray
 476   (package
 477     (name "python-xarray")
 478     (version "0.15.1")
 479     (source (origin
 480               (method url-fetch)
 481               (uri (pypi-uri "xarray" version))
 482               (sha256
 483                (base32
 484                 "1yx8j66b7rn10m2l6gmn8yr9cn38pi5cj0x0wwpy4hdnhy6i7qv4"))))
 485     (build-system python-build-system)
 486     (native-inputs
 487      `(("python-setuptools-scm" ,python-setuptools-scm)
 488        ("python-pytest" ,python-pytest)))
 489     (propagated-inputs
 490      `(("python-numpy" ,python-numpy)
 491        ("python-pandas" ,python-pandas)))
 492     (arguments
 493      `(#:phases
 494        (modify-phases %standard-phases
 495          (replace 'check
 496            (lambda _
 497              (invoke "pytest"))))))
 498     (home-page "https://github.com/pydata/xarray")
 499     (synopsis "N-D labeled arrays and datasets")
 500     (description "Xarray (formerly xray) makes working with labelled
 501 multi-dimensional arrays simple, efficient, and fun!
 502
 503 Xarray introduces labels in the form of dimensions, coordinates and attributes
 504 on top of raw NumPy-like arrays, which allows for a more intuitive, more
 505 concise, and less error-prone developer experience.  The package includes a
 506 large and growing library of domain-agnostic functions for advanced analytics
 507 and visualization with these data structures.")
 508     (license license:asl2.0)))
 509
 510 (define-public python-msgpack-numpy
 511   (package
 512     (name "python-msgpack-numpy")
 513     (version "0.4.6.post0")
 514     (source
 515      (origin
 516        (method url-fetch)
 517        (uri (pypi-uri "msgpack-numpy" version))
 518        (sha256
 519         (base32
 520          "0syzy645mwcy7lfjwz6pc8f9p2vv1qk4limc8iina3l5nnf0rjyz"))))
 521     (build-system python-build-system)
 522     (propagated-inputs
 523      `(("python-msgpack" ,python-msgpack)
 524        ("python-numpy" ,python-numpy)))
 525     (home-page "https://github.com/lebedov/msgpack-numpy")
 526     (synopsis
 527      "Numpy data serialization using msgpack")
 528     (description
 529      "This package provides encoding and decoding routines that enable the
 530 serialization and deserialization of numerical and array data types provided
 531 by numpy using the highly efficient @code{msgpack} format.  Serialization of
 532 Python's native complex data types is also supported.")
 533     (license license:bsd-3)))
 534
 535 (define-public python-statannot
 536   (package
 537     (name "python-statannot")
 538     (version "0.2.3")
 539     (source
 540      (origin
 541        (method url-fetch)
 542        (uri (pypi-uri "statannot" version))
 543        (sha256
 544         (base32
 545          "1f8c2sylzr7lpjbyqxsqlp9xi8rj3d8c9hfh98x4jbb83zxc4026"))))
 546     (build-system python-build-system)
 547     (propagated-inputs
 548      `(("python-numpy" ,python-numpy)
 549        ("python-seaborn" ,python-seaborn)
 550        ("python-matplotlib" ,python-matplotlib)
 551        ("python-pandas" ,python-pandas)
 552        ("python-scipy" ,python-scipy)))
 553     (home-page
 554      "https://github.com/webermarcolivier/statannot")
 555     (synopsis "Add annotations to existing plots generated by seaborn")
 556     (description
 557      "This is a Python package to compute statistical test and add statistical
 558 annotations on an existing boxplots and barplots generated by seaborn.")
 559     (license license:expat)))
 560
 561 (define-public python-upsetplot
 562   (package
 563     (name "python-upsetplot")
 564     (version "0.4.1")
 565     (source
 566      (origin
 567        (method url-fetch)
 568        (uri (pypi-uri "UpSetPlot" version))
 569        (sha256
 570         (base32
 571          "0kwljcmsvrxm33y3ssham2bwv4a5m31mv96y9h18va0cv7s3mqn1"))))
 572     (build-system python-build-system)
 573     (arguments
 574      `(#:phases
 575        (modify-phases %standard-phases
 576          (add-after 'unpack 'fix-versioning
 577            (lambda _
 578              (substitute* "setup.py"
 579                (("pytest-cov<2.6") "pytest-cov"))))
 580          (replace 'check
 581            (lambda* (#:key inputs outputs #:allow-other-keys)
 582              (add-installed-pythonpath inputs outputs)
 583              (invoke "pytest" "-v" "--doctest-modules"))))))
 584     (propagated-inputs
 585      `(("python-matplotlib" ,python-matplotlib)
 586        ("python-pandas" ,python-pandas)))
 587     (native-inputs
 588      `(("python-pytest-runner" ,python-pytest-runner)
 589        ("python-pytest-cov" ,python-pytest-cov)))
 590     (home-page "https://upsetplot.readthedocs.io")
 591     (synopsis "Draw UpSet plots with Pandas and Matplotlib")
 592     (description
 593      "This is a Python implementation of UpSet plots by Lex et al.
 594 UpSet plots are used to visualize set overlaps; like Venn diagrams but more
 595 readable.")
 596     (license license:bsd-3)))