1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
3 ;;; Copyright © 2017, 2018 Roel Janssen <roel@gnu.org>
4 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
5 ;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
6 ;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
7 ;;; Copyright © 2018 Sahithi Yarlagadda <sahi@swecha.net>
8 ;;; Copyright © 2018 Sandeep Subramanian <sandeepsubramanian94@gmail.com>
9 ;;; Copyright © 2018 Charlie Ritter <chewzeirta@posteo.net>
10 ;;; Copyright © 2018 Konrad Hinsen <konrad.hinsen@fastmail.net>
12 ;;; This file is part of GNU Guix.
14 ;;; GNU Guix is free software; you can redistribute it and/or modify it
15 ;;; under the terms of the GNU General Public License as published by
16 ;;; the Free Software Foundation; either version 3 of the License, or (at
17 ;;; your option) any later version.
19 ;;; GNU Guix is distributed in the hope that it will be useful, but
20 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
21 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
22 ;;; GNU General Public License for more details.
24 ;;; You should have received a copy of the GNU General Public License
25 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
27 (define-module (gnu packages cran)
28 #:use-module ((guix licenses) #:prefix license:)
29 #:use-module (guix packages)
30 #:use-module (guix download)
31 #:use-module (guix utils)
32 #:use-module (guix build-system r)
33 #:use-module (gnu packages gcc)
34 #:use-module (gnu packages machine-learning)
35 #:use-module (gnu packages maths)
36 #:use-module (gnu packages mpi)
37 #:use-module (gnu packages perl)
38 #:use-module (gnu packages pkg-config)
39 #:use-module (gnu packages python)
40 #:use-module (gnu packages statistics)
41 #:use-module (gnu packages tls)
42 #:use-module (gnu packages web))
44 (define-public r-tidyverse
51 (uri (cran-uri "tidyverse" version))
54 "0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd"))))
55 (build-system r-build-system)
57 `(("r-broom" ,r-broom)
59 ("r-crayon" ,r-crayon)
60 ("r-dbplyr" ,r-dbplyr)
62 ("r-forcats" ,r-forcats)
63 ("r-ggplot2" ,r-ggplot2)
67 ("r-jsonlite" ,r-jsonlite)
68 ("r-lubridate" ,r-lubridate)
69 ("r-magrittr" ,r-magrittr)
70 ("r-modelr" ,r-modelr)
73 ("r-readxl" ,r-readxl)
74 ("r-reprex" ,r-reprex)
76 ("r-rstudioapi" ,r-rstudioapi)
78 ("r-stringr" ,r-stringr)
79 ("r-tibble" ,r-tibble)
82 (home-page "https://tidyverse.tidyverse.org")
83 (synopsis "Install and load packages from the \"Tidyverse\"")
85 "The @code{tidyverse} is a set of packages that work in harmony because
86 they share common data representations and API design. This package is
87 designed to make it easy to install and load multiple tidyverse packages in a
89 (license license:gpl3)))
91 (define-public r-rvest
98 (uri (cran-uri "rvest" version))
101 "04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"))))
102 (build-system r-build-system)
105 ("r-magrittr" ,r-magrittr)
106 ("r-selectr" ,r-selectr)
108 (home-page "https://github.com/hadley/rvest")
109 (synopsis "Simple web scraping for R")
111 "@code{r-rvest} helps you scrape information from web pages. It is
112 designed to work with @code{magrittr} to make it easy to express common web
113 scraping tasks, inspired by libraries like @code{BeautifulSoup}.")
114 (license license:gpl3)))
116 (define-public r-selectr
123 (uri (cran-uri "selectr" version))
126 "1jp27rxks4w29l47k42869hp8hnkzq2rnvsqbr44wd19fqb2zm4b"))))
127 (build-system r-build-system)
129 `(("r-stringr" ,r-stringr)
131 (home-page "https://sjp.co.nz/projects/selectr/")
132 (synopsis "Translate CSS selectors to XPath expressions")
134 "@code{r-selectr} translates a CSS3 selector into an equivalent XPath
135 expression. This allows you to use CSS selectors when working with the XML
136 package as it can only evaluate XPath expressions. Also provided are
137 convenience functions useful for using CSS selectors on XML nodes. This
138 package is a port of the Python package @code{cssselect}.")
139 (license license:bsd-3)))
141 (define-public r-reprex
148 (uri (cran-uri "reprex" version))
151 "105d9vsmqfilgpw8psfb2wyiz1hvcycvh4cqhb3ab37lm3rcavvs"))))
152 (build-system r-build-system)
154 `(("r-callr" ,r-callr)
156 ("r-rmarkdown" ,r-rmarkdown)
157 ("r-whisker" ,r-whisker)))
158 (home-page "https://github.com/tidyverse/reprex")
159 (synopsis "Prepare reproducible R code examples for sharing")
161 "This package provides a convenience wrapper that uses the
162 @code{rmarkdown} package to render small snippets of code to target formats
163 that include both code and output. The goal is to encourage the sharing of
164 small, reproducible, and runnable examples on code-oriented websites or email.
165 @code{reprex} also extracts clean, runnable R code from various common formats,
166 such as copy/paste from an R session.")
167 (license license:expat)))
169 (define-public r-callr
176 (uri (cran-uri "callr" version))
179 "1053qqq632z94pqq2v5dynjpgyv1b1c8zvidmcllw7zn8zha8gqf"))))
180 (build-system r-build-system)
183 ("r-processx" ,r-processx)))
184 (home-page "https://github.com/r-lib/callr#readme")
185 (synopsis "Call R from R")
187 "It is sometimes useful to perform a computation in a separate R process,
188 without affecting the current R process at all. This packages does exactly
190 (license license:expat)))
192 (define-public r-readxl
199 (uri (cran-uri "readxl" version))
202 "05ii8knrg4jji6h7bv6bfpn279b6x52yrskdx5rv7b0hcpy22gdn"))))
203 (build-system r-build-system)
205 `(("r-cellranger" ,r-cellranger)
207 ("r-tibble" ,r-tibble)))
208 (home-page "https://readxl.tidyverse.org")
209 (synopsis "Read Excel files")
211 "This package lets you import Excel files into R. It supports
212 @file{.xls} via the embedded @code{libxls} C library and @file{.xlsx} via
213 the embedded @code{RapidXML} C++ library.")
214 ;; XXX: This package bundles a copy of 'libxsl' which is BSD-2 and
215 ;; 'rapidxml' which is Boost.
216 (license (list license:gpl3 license:bsd-2 license:boost1.0))))
218 (define-public r-modelr
225 (uri (cran-uri "modelr" version))
228 "09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a"))))
229 (build-system r-build-system)
231 `(("r-broom" ,r-broom)
233 ("r-lazyeval" ,r-lazyeval)
234 ("r-magrittr" ,r-magrittr)
236 ("r-tibble" ,r-tibble)
237 ("r-tidyr" ,r-tidyr)))
238 (home-page "https://github.com/tidyverse/modelr")
239 (synopsis "Helper functions for modelling in pipelines")
241 "Functions for modelling that help you seamlessly integrate modelling
242 into a pipeline of data manipulation and visualisation.")
243 (license license:gpl3)))
245 (define-public r-haven
252 (uri (cran-uri "haven" version))
255 "1fkcvsrnw8waqwggv0aydbvbi99x5kp9g78xfxj4w6s3xvdzcysz"))))
256 (build-system r-build-system)
258 `(("r-forcats" ,r-forcats)
262 ("r-tibble" ,r-tibble)))
263 (home-page "https://haven.tidyverse.org")
264 (synopsis "Import and Export 'SPSS', 'Stata' and 'SAS' Files")
266 "This package lets you mport foreign statistical formats into R via the
267 embedded @url{https://github.com/WizardMac/ReadStat,ReadStat} C library.")
268 (license license:expat)))
270 (define-public r-amap
276 (uri (cran-uri "amap" version))
279 "1qnl2x98x64iaipkx5126rsddq2sx5ml43h75xyiyn30yvbmlxyk"))))
280 (build-system r-build-system)
282 `(("gfortran" ,gfortran)))
283 (home-page "http://mulcyber.toulouse.inra.fr/projects/amap/")
284 (synopsis "Another multidimensional analysis package")
285 (description "This package provides tools for clustering and principal
286 component analysis (with robust methods, and parallelized functions).")
287 (license license:gpl2+)))
296 (uri (cran-uri "ape" version))
299 "0vm2065993wf4hdqarxqykhfz9aaj0rrb98alhkq4qw1d2kdrmdp"))))
300 (build-system r-build-system)
302 `(("r-lattice" ,r-lattice)
305 (home-page "http://ape-package.ird.fr/")
306 (synopsis "Analyses of phylogenetics and evolution")
308 "This package provides functions for reading, writing, plotting, and
309 manipulating phylogenetic trees, analyses of comparative data in a
310 phylogenetic framework, ancestral character analyses, analyses of
311 diversification and macroevolution, computing distances from DNA sequences,
312 and several other tools.")
313 (license license:gpl2+)))
315 (define-public r-abbyyr
322 (uri (cran-uri "abbyyR" version))
325 "1jh1c1ad6mgw7brdh2isnza1qpjlfxnqr7jl76yd93axyfl76xjx"))))
326 (properties `((upstream-name . "abbyyR")))
327 (build-system r-build-system)
332 ("r-progress" ,r-progress)
335 (home-page "https://github.com/soodoku/abbyyR")
336 (synopsis "Access to Abbyy Optical Character Recognition (OCR) API")
338 "This package provides tools to get text from images of text using Abbyy
339 Cloud Optical Character Recognition (OCR) API. With abbyyyR, one can easily
340 OCR images, barcodes, forms, documents with machine readable zones, e.g.
341 passports and get the results in a variety of formats including plain text and
342 XML. To learn more about the Abbyy OCR API, see @url{http://ocrsdk.com/}.")
343 (license license:expat)))
345 (define-public r-colorspace
347 (name "r-colorspace")
352 (uri (cran-uri "colorspace" version))
354 (base32 "0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"))))
355 (build-system r-build-system)
356 (home-page "https://cran.r-project.org/web/packages/colorspace")
357 (synopsis "Color space manipulation")
359 "This package carries out a mapping between assorted color spaces
360 including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar
361 CIELAB. Qualitative, sequential, and diverging color palettes based on HCL
362 colors are provided.")
363 (license license:bsd-3)))
365 (define-public r-glue
372 (uri (cran-uri "glue" version))
375 "0vi9y8ix95g6hjqdz9c9y4119apbdjcypdv0ag8cl6vaxqs5n9qr"))))
376 (build-system r-build-system)
377 (home-page "https://github.com/tidyverse/glue")
378 (synopsis "Interpreted string literals")
380 "This package provides an implementation of interpreted string literals,
381 inspired by Python's Literal String Interpolation (PEP-0498) and
382 Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.")
383 (license license:expat)))
385 (define-public r-pastecs
391 (uri (cran-uri "pastecs" version))
394 "0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"))))
395 (build-system r-build-system)
397 `(("r-boot" ,r-boot)))
398 (home-page "http://www.sciviews.org/pastecs")
399 (synopsis "Analysis of space-time ecological series")
401 "This package provides functions for regulation, decomposition and analysis
402 of space-time series. The @code{pastecs} library is a PNEC-Art4 and IFREMER
403 initiative to bring PASSTEC 2000 functionalities to R.")
404 (license license:gpl2+)))
406 (define-public r-plogr
413 (uri (cran-uri "plogr" version))
416 "0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"))))
417 (build-system r-build-system)
418 (home-page "https://github.com/krlmlr/plogr")
419 (synopsis "R bindings for the plog C++ logging library")
421 "This package provides the header files for a stripped-down version of
422 the plog header-only C++ logging library, and a method to log to R's standard
424 (license license:expat)))
426 (define-public r-rcpp
433 (uri (cran-uri "Rcpp" version))
435 (base32 "08xg8h3w25sdb3xr18g9pa0x8cirkdgljqapxmw56ss1j9fc89s2"))))
436 (build-system r-build-system)
437 (home-page "http://www.rcpp.org")
438 (synopsis "Seamless R and C++ integration")
440 "The Rcpp package provides R functions as well as C++ classes which offer
441 a seamless integration of R and C++. Many R data types and objects can be
442 mapped back and forth to C++ equivalents which facilitates both writing of new
443 code as well as easier integration of third-party libraries. Documentation
444 about Rcpp is provided by several vignettes included in this package, via the
445 'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel
446 and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
447 'citation(\"Rcpp\")' for details on these last two.")
448 (license license:gpl2+)))
450 (define-public r-bindr
457 (uri (cran-uri "bindr" version))
460 "1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"))))
461 (build-system r-build-system)
462 (home-page "https://github.com/krlmlr/bindr")
463 (synopsis "Parametrized active bindings")
465 "This package provides a simple interface for creating active bindings
466 where the bound function accepts additional arguments.")
467 (license license:expat)))
469 (define-public r-bindrcpp
476 (uri (cran-uri "bindrcpp" version))
479 "0rz4ibjdjsxl99ff3ha79z7cnjmilx4rx58fk9kk7ld9xc4hf4s8"))))
480 (build-system r-build-system)
482 `(("r-bindr" ,r-bindr)
485 (home-page "https://github.com/krlmlr/bindrcpp")
486 (synopsis "Rcpp interface to active bindings")
488 "This package provides an easy way to fill an environment with active
489 bindings that call a C++ function.")
490 (license license:expat)))
499 (uri (cran-uri "AUC" version))
502 "0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"))))
503 (properties `((upstream-name . "AUC")))
504 (build-system r-build-system)
505 (home-page "https://cran.r-project.org/web/packages/AUC")
506 (synopsis "Compute the area under the curve of selected measures")
508 "This package includes functions to compute the area under the curve of
509 selected measures: the area under the sensitivity curve (AUSEC), the area
510 under the specificity curve (AUSPC), the area under the accuracy
511 curve (AUACC), and the area under the receiver operating characteristic
512 curve (AUROC). The curves can also be visualized. Support for partial areas
514 (license license:gpl2+)))
516 (define-public r-calibrate
523 (uri (cran-uri "calibrate" version))
526 "010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"))))
527 (build-system r-build-system)
529 `(("r-mass" ,r-mass)))
530 (home-page "https://cran.r-project.org/web/packages/calibrate")
531 (synopsis "Calibration of scatterplot and biplot axes")
533 "This is a package for drawing calibrated scales with tick marks
534 on (non-orthogonal) variable vectors in scatterplots and biplots.")
535 (license license:gpl2)))
537 (define-public r-shape
544 (uri (cran-uri "shape" version))
547 "0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"))))
548 (build-system r-build-system)
549 (home-page "https://cran.r-project.org/web/packages/shape")
550 (synopsis "Functions for plotting graphical shapes")
552 "This package provides functions for plotting graphical shapes such as
553 ellipses, circles, cylinders, arrows, ...")
554 (license license:gpl3+)))
556 (define-public r-globaloptions
558 (name "r-globaloptions")
563 (uri (cran-uri "GlobalOptions" version))
566 "04jvha0mafslqz5nr99xjylg9n2x31gj9v4mgyg7qcmfwpqyw3ch"))))
567 (properties `((upstream-name . "GlobalOptions")))
568 (build-system r-build-system)
569 (home-page "https://github.com/jokergoo/GlobalOptions")
570 (synopsis "Generate functions to get or set global options")
572 "This package provides more controls on the option values such as
573 validation and filtering on the values, making options invisible or private.")
574 (license license:gpl2+)))
576 (define-public r-circlize
583 (uri (cran-uri "circlize" version))
586 "0pg947gkryygikfbv6admx8gsg02b6g219j6a1sdnqij2908yxna"))))
587 (build-system r-build-system)
589 `(("r-colorspace" ,r-colorspace)
590 ("r-globaloptions" ,r-globaloptions)
591 ("r-shape" ,r-shape)))
592 (home-page "https://github.com/jokergoo/circlize")
593 (synopsis "Circular visualization")
595 "Circular layout is an efficient way to visualise huge amounts of
596 information. This package provides an implementation of circular layout
597 generation in R as well as an enhancement of available software. Its
598 flexibility is based on the usage of low-level graphics functions such that
599 self-defined high-level graphics can be easily implemented by users for
600 specific purposes. Together with the seamless connection between the powerful
601 computational and visual environment in R, it gives users more convenience and
602 freedom to design figures for better understanding complex patterns behind
603 multi-dimensional data.")
604 (license license:gpl2+)))
606 (define-public r-powerlaw
613 (uri (cran-uri "poweRlaw" version))
616 "04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"))))
617 (properties `((upstream-name . "poweRlaw")))
618 (build-system r-build-system)
620 `(("r-vgam" ,r-vgam)))
621 (home-page "https://github.com/csgillespie/poweRlaw")
622 (synopsis "Tools for the analysis of heavy tailed distributions")
624 "This package provides an implementation of maximum likelihood estimators
625 for a variety of heavy tailed distributions, including both the discrete and
626 continuous power law distributions. Additionally, a goodness-of-fit based
627 approach is used to estimate the lower cut-off for the scaling region.")
628 ;; Any of these GPL versions.
629 (license (list license:gpl2 license:gpl3))))
631 (define-public r-compare
638 (uri (cran-uri "compare" version))
641 "0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"))))
642 (build-system r-build-system)
643 (home-page "https://cran.r-project.org/web/packages/compare")
644 (synopsis "Comparing objects for differences")
646 "This package provides functions to compare a model object to a
647 comparison object. If the objects are not identical, the functions can be
648 instructed to explore various modifications of the objects (e.g., sorting
649 rows, dropping names) to see if the modified versions are identical.")
650 (license license:gpl2+)))
652 (define-public r-dendextend
654 (name "r-dendextend")
659 (uri (cran-uri "dendextend" version))
662 "1virn3c232xwcq3d0hhkgjh5gpzl01s39iwii5gxcm9mnsxjzdrh"))))
663 (build-system r-build-system)
666 ("r-ggplot2" ,r-ggplot2)
667 ("r-magrittr" ,r-magrittr)
668 ("r-viridis" ,r-viridis)
669 ("r-whisker" ,r-whisker)))
670 (home-page "https://cran.r-project.org/web/packages/dendextend")
671 (synopsis "Extending 'dendrogram' functionality in R")
673 "This package offers a set of functions for extending @code{dendrogram}
674 objects in R, letting you visualize and compare trees of hierarchical
675 clusterings. You can adjust a tree's graphical parameters (the color, size,
676 type, etc of its branches, nodes and labels) and visually and statistically
677 compare different dendrograms to one another.")
678 ;; Any of these versions
679 (license (list license:gpl2 license:gpl3))))
681 (define-public r-getoptlong
683 (name "r-getoptlong")
688 (uri (cran-uri "GetoptLong" version))
691 "1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"))))
692 (properties `((upstream-name . "GetoptLong")))
693 (build-system r-build-system)
697 `(("r-globaloptions" ,r-globaloptions)
698 ("r-rjson" ,r-rjson)))
699 (home-page "https://github.com/jokergoo/GetoptLong")
700 (synopsis "Parsing command-line arguments and variable interpolation")
702 "This is yet another command-line argument parser which wraps the
703 powerful Perl module @code{Getopt::Long} and with some adaptation for easier
704 use in R. It also provides a simple way for variable interpolation in R.")
705 (license license:gpl2+)))
707 (define-public r-fastmatch
714 (uri (cran-uri "fastmatch" version))
717 "0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"))))
718 (build-system r-build-system)
719 (home-page "http://www.rforge.net/fastmatch")
720 (synopsis "Fast match function")
722 "This package provides a fast @code{match} replacement for cases that
723 require repeated look-ups. It is slightly faster that R's built-in
724 @code{match} function on first match against a table, but extremely fast on
725 any subsequent lookup as it keeps the hash table in memory.")
726 (license license:gpl2)))
735 (uri (cran-uri "ff" version))
738 "1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw"))))
739 (build-system r-build-system)
740 (propagated-inputs `(("r-bit" ,r-bit)))
741 (home-page "http://ff.r-forge.r-project.org/")
742 (synopsis "Memory-efficient storage of large data on disk and access functions")
744 "This package provides data structures that are stored on disk but
745 behave (almost) as if they were in RAM by transparently mapping only a section
747 ;; error Architecture not supported.
748 (supported-systems (delete "aarch64-linux" %supported-systems))
749 (license license:gpl2)))
751 (define-public r-ffbase
758 (uri (cran-uri "ffbase" version))
761 "1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"))))
762 (build-system r-build-system)
765 ("r-fastmatch" ,r-fastmatch)
767 (home-page "http://github.com/edwindj/ffbase")
768 (synopsis "Basic statistical functions for package 'ff'")
770 "This package extends the out of memory vectors of @code{ff} with
771 statistical functions and other utilities to ease their usage.")
772 (license license:gpl3)))
774 (define-public r-prettyunits
776 (name "r-prettyunits")
781 (uri (cran-uri "prettyunits" version))
784 "0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"))))
785 (build-system r-build-system)
787 `(("r-assertthat" ,r-assertthat)
788 ("r-magrittr" ,r-magrittr)))
789 (home-page "https://github.com/gaborcsardi/prettyunits")
790 (synopsis "Pretty, human readable formatting of quantities")
792 "This package provides tools for pretty, human readable formatting of
794 (license license:expat)))
796 (define-public r-reshape
803 (uri (cran-uri "reshape" version))
806 "14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig"))))
807 (build-system r-build-system)
811 (home-page "http://had.co.nz/reshape")
812 (synopsis "Flexibly reshape data")
814 "Flexibly restructure and aggregate data using just two functions:
815 @code{melt} and @code{cast}. This package provides them.")
816 (license license:expat)))
818 (define-public r-progress
825 (uri (cran-uri "progress" version))
828 "1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"))))
829 (build-system r-build-system)
831 `(("r-prettyunits" ,r-prettyunits)
833 (home-page "https://github.com/gaborcsardi/progress")
834 (synopsis "Terminal progress bars")
836 "This package provides configurable progress bars. They may include
837 percentage, elapsed time, and/or the estimated completion time. They work in
838 terminals, in Emacs ESS, RStudio, Windows Rgui, and the macOS R.app. The
839 package also provides a C++ API, that works with or without Rcpp.")
840 (license license:expat)))
842 (define-public r-ggally
849 (uri (cran-uri "GGally" version))
852 "1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"))))
853 (properties `((upstream-name . "GGally")))
854 (build-system r-build-system)
856 `(("libressl" ,libressl)))
858 `(("r-ggplot2" ,r-ggplot2)
859 ("r-gtable" ,r-gtable)
861 ("r-progress" ,r-progress)
862 ("r-rcolorbrewer" ,r-rcolorbrewer)
863 ("r-reshape" ,r-reshape)
864 ("r-rlang" ,r-rlang)))
865 (home-page "https://ggobi.github.io/ggally")
866 (synopsis "Extension to ggplot2")
868 "The R package ggplot2 is a plotting system based on the grammar of
869 graphics. GGally extends ggplot2 by adding several functions to reduce the
870 complexity of combining geometric objects with transformed data. Some of
871 these functions include a pairwise plot matrix, a two group pairwise plot
872 matrix, a parallel coordinates plot, a survival plot, and several functions to
874 (license license:gpl2+)))
876 (define-public r-proxy
883 (uri (cran-uri "proxy" version))
886 "0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma"))))
887 (build-system r-build-system)
888 (home-page "https://cran.r-project.org/web/packages/proxy")
889 (synopsis "Distance and similarity measures")
891 "This package provides an extensible framework for the efficient
892 calculation of auto- and cross-proximities, along with implementations of the
894 (license license:gpl2)))
903 (uri (cran-uri "sp" version))
906 "0q04yfgyjannsrzl0ppwcv0simrxrrbx2iz5mzaafc5x38zf0q3d"))))
907 (build-system r-build-system)
909 `(("r-lattice" ,r-lattice)))
910 (home-page "https://cran.r-project.org/web/packages/sp")
911 (synopsis "Classes and methods for spatial data")
913 "This package provides classes and methods for spatial data; the classes
914 document where the spatial location information resides, for 2D or 3D data.
915 Utility functions are provided, e.g. for plotting data as maps, spatial
916 selection, as well as methods for retrieving coordinates, for subsetting,
917 print, summary, etc.")
918 (license license:gpl2+)))
920 (define-public r-rmtstat
927 (uri (cran-uri "RMTstat" version))
930 "1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"))))
931 (properties `((upstream-name . "RMTstat")))
932 (build-system r-build-system)
933 (home-page "https://cran.r-project.org/web/packages/RMTstat")
934 (synopsis "Distributions, statistics and tests derived from random matrix theory")
936 "This package provides functions for working with the Tracy-Widom laws
937 and other distributions related to the eigenvalues of large Wishart
939 (license license:bsd-3)))
941 (define-public r-rmpi
947 (uri (cran-uri "Rmpi" version))
950 "1b62gs7w1xqadqd7ir41jnxlcf14gcqfxd0915kn9ckdlsdrh0sw"))))
951 (properties `((upstream-name . "Rmpi")))
952 (build-system r-build-system)
954 `(#:configure-flags '("--configure-args=\"--with-Rmpi-type=OPENMPI\"")))
956 `(("openmpi" ,openmpi)))
958 `(("pkg-config" ,pkg-config)))
959 (home-page "http://www.stats.uwo.ca/faculty/yu/Rmpi")
960 (synopsis "R interface to message-passing interface (MPI)")
962 "This package provides an interface (wrapper) to MPI APIs. It also
963 provides an interactive R manager and worker environment.")
964 (license license:gpl2+)))
966 (define-public r-lmoments
973 (uri (cran-uri "Lmoments" version))
976 "13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"))))
977 (properties `((upstream-name . "Lmoments")))
978 (build-system r-build-system)
979 (home-page "http://www.tilastotiede.fi/juha_karvanen.html")
980 (synopsis "L-moments and quantile mixtures")
982 "This package contains functions to estimate L-moments and trimmed
983 L-moments from the data. It also contains functions to estimate the
984 parameters of the normal polynomial quantile mixture and the Cauchy polynomial
985 quantile mixture from L-moments and trimmed L-moments.")
986 (license license:gpl2)))
988 (define-public r-distillery
990 (name "r-distillery")
995 (uri (cran-uri "distillery" version))
998 "1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"))))
999 (build-system r-build-system)
1000 (home-page "http://www.ral.ucar.edu/staff/ericg")
1001 (synopsis "Functions for confidence intervals and object information")
1003 "This package provides some very simple method functions for confidence
1004 interval calculation and to distill pertinent information from a potentially
1005 complex object; primarily used in common with the packages extRemes and
1007 (license license:gpl2+)))
1009 (define-public r-extremes
1016 (uri (cran-uri "extRemes" version))
1019 "0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"))))
1020 (properties `((upstream-name . "extRemes")))
1021 (build-system r-build-system)
1024 ("r-distillery" ,r-distillery)
1025 ("r-lmoments" ,r-lmoments)))
1026 (home-page "http://www.assessment.ucar.edu/toolkit/")
1027 (synopsis "Extreme value analysis")
1029 "ExtRemes is a suite of functions for carrying out analyses on the
1030 extreme values of a process of interest; be they block maxima over long blocks
1031 or excesses over a high threshold.")
1032 (license license:gpl2+)))
1034 (define-public r-lmtest
1041 (uri (cran-uri "lmtest" version))
1044 "0sym9sm1vl6bbgq01jhz1plxqmgh8hrgrn7rw0mwvsalcn6id7xy"))))
1045 (build-system r-build-system)
1047 `(("r-zoo" ,r-zoo)))
1049 `(("gfortran" ,gfortran)))
1050 (home-page "https://cran.r-project.org/web/packages/lmtest")
1051 (synopsis "Testing linear regression models")
1053 "This package provides a collection of tests, data sets, and examples for
1054 diagnostic checking in linear regression models. Furthermore, some generic
1055 tools for inference in parametric models are provided.")
1056 ;; Either version is okay
1057 (license (list license:gpl2 license:gpl3))))
1059 (define-public r-idr
1065 (uri (cran-uri "idr" version))
1068 "05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"))))
1069 (build-system r-build-system)
1070 (home-page "https://cran.r-project.org/web/packages/idr/")
1071 (synopsis "Irreproducible discovery rate")
1073 "This is a package for estimating the copula mixture model and plotting
1074 correspondence curves in \"Measuring reproducibility of high-throughput
1075 experiments\" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779,
1076 by Li, Brown, Huang, and Bickel")
1077 (license license:gpl2+)))
1079 (define-public r-inline
1085 (uri (cran-uri "inline" version))
1088 "0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"))))
1089 (build-system r-build-system)
1090 (home-page "https://cran.r-project.org/web/packages/inline")
1091 (synopsis "Functions to inline C, C++, Fortran function calls from R")
1093 "This package provides functionality to dynamically define R functions
1094 and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and
1095 @code{.Call} calling conventions.")
1096 ;; Any version of the LGPL.
1097 (license license:lgpl3+)))
1099 (define-public r-bbmle
1106 (uri (cran-uri "bbmle" version))
1109 "1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc"))))
1110 (build-system r-build-system)
1112 `(("r-lattice" ,r-lattice)
1114 ("r-numderiv" ,r-numderiv)))
1115 (home-page "https://cran.r-project.org/web/packages/bbmle")
1116 (synopsis "Tools for General Maximum Likelihood Estimation")
1118 "This package provides methods and functions for fitting maximum
1119 likelihood models in R. This package modifies and extends the @code{mle}
1120 classes in the @code{stats4} package.")
1121 ;; Any version of the GPL
1122 (license license:gpl2+)))
1124 (define-public r-emdbook
1131 (uri (cran-uri "emdbook" version))
1134 "0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv"))))
1135 (build-system r-build-system)
1137 `(("r-bbmle" ,r-bbmle)
1139 ("r-lattice" ,r-lattice)
1142 ("r-rcpp" ,r-rcpp)))
1143 (home-page "http://www.math.mcmaster.ca/bolker/emdbook")
1144 (synopsis "Support functions and data for \"Ecological Models and Data\"")
1146 "This package provides auxiliary functions and data sets for \"Ecological
1147 Models and Data\", a book presenting maximum likelihood estimation and related
1148 topics for ecologists (ISBN 978-0-691-12522-0).")
1150 (license (list license:gpl2 license:gpl3))))
1152 (define-public r-lpsolve
1159 (uri (cran-uri "lpSolve" version))
1162 "13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"))))
1163 (properties `((upstream-name . "lpSolve")))
1164 (build-system r-build-system)
1165 (home-page "https://cran.r-project.org/web/packages/lpSolve")
1166 (synopsis "R interface to Lp_solve to solve linear/integer programs")
1168 "Lp_solve is software for solving linear, integer and mixed integer
1169 programs. This implementation supplies a \"wrapper\" function in C and some R
1170 functions that solve general linear/integer problems, assignment problems, and
1171 transportation problems.")
1172 (license license:lgpl2.0)))
1174 (define-public r-limsolve
1181 (uri (cran-uri "limSolve" version))
1184 "1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"))))
1185 (properties `((upstream-name . "limSolve")))
1186 (build-system r-build-system)
1188 `(("r-lpsolve" ,r-lpsolve)
1190 ("r-quadprog" ,r-quadprog)))
1191 (native-inputs `(("gfortran" ,gfortran)))
1192 (home-page "https://cran.r-project.org/web/packages/limSolve")
1193 (synopsis "Solving linear inverse models")
1195 "This package provides functions that:
1198 @item find the minimum/maximum of a linear or quadratic function,
1199 @item sample an underdetermined or overdetermined system,
1200 @item solve a linear system Ax=B for the unknown x.
1203 It includes banded and tridiagonal linear systems. The package calls Fortran
1204 functions from LINPACK.")
1206 (license (list license:gpl2+ license:gpl3+))))
1208 (define-public r-fitdistrplus
1210 (name "r-fitdistrplus")
1215 (uri (cran-uri "fitdistrplus" version))
1218 "18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6"))))
1219 (build-system r-build-system)
1221 `(("r-mass" ,r-mass)
1222 ("r-survival" ,r-survival)))
1223 (home-page "http://riskassessment.r-forge.r-project.org")
1224 (synopsis "Fitting a parametric distribution from data")
1226 "This package extends the @code{fitdistr} function of the MASS package
1227 with several functions to help the fit of a parametric distribution to
1228 non-censored or censored data. Censored data may contain left-censored,
1229 right-censored and interval-censored values, with several lower and upper
1230 bounds. In addition to @dfn{maximum likelihood estimation} (MLE), the package
1231 provides moment matching (MME), quantile matching (QME) and maximum
1232 goodness-of-fit estimation (MGE) methods (available only for non-censored
1233 data). Weighted versions of MLE, MME and QME are available.")
1234 (license license:gpl2+)))
1236 (define-public r-energy
1243 (uri (cran-uri "energy" version))
1246 "12skvlridfq4jd5mh0yxl79ps0zi2xnlh4hsdgxad0gm7qky8awd"))))
1247 (build-system r-build-system)
1249 `(("r-boot" ,r-boot)
1250 ("r-rcpp" ,r-rcpp)))
1251 (home-page "https://cran.r-project.org/web/packages/energy")
1252 (synopsis "Multivariate inference via the energy of data")
1254 "This package provides e-statistics (energy) tests and statistics for
1255 multivariate and univariate inference, including distance correlation,
1256 one-sample, two-sample, and multi-sample tests for comparing multivariate
1257 distributions, are implemented. Measuring and testing multivariate
1258 independence based on distance correlation, partial distance correlation,
1259 multivariate goodness-of-fit tests, clustering based on energy distance,
1260 testing for multivariate normality, distance components (disco) for
1261 non-parametric analysis of structured data, and other energy
1262 statistics/methods are implemented.")
1263 (license license:gpl2+)))
1265 (define-public r-suppdists
1267 (name "r-suppdists")
1272 (uri (cran-uri "SuppDists" version))
1275 "1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"))))
1276 (properties `((upstream-name . "SuppDists")))
1277 (build-system r-build-system)
1278 (home-page "https://cran.r-project.org/web/packages/SuppDists")
1279 (synopsis "Supplementary distributions")
1281 "This package provides ten distributions supplementing those built into
1282 R. Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi squared,
1283 Spearman's rho, maximum F ratio, the Pearson product moment correlation
1284 coefficient, Johnson distributions, normal scores and generalized
1285 hypergeometric distributions. In addition two random number generators of
1286 George Marsaglia are included.")
1287 (license license:gpl2+)))
1289 (define-public r-ksamples
1296 (uri (cran-uri "kSamples" version))
1299 "15d5q5vpp4wx5rk5kjxjdxpwc8mkq5sbdz8gi07iscrvhzb5rzfr"))))
1300 (properties `((upstream-name . "kSamples")))
1301 (build-system r-build-system)
1303 `(("r-suppdists" ,r-suppdists)))
1304 (home-page "https://cran.r-project.org/web/packages/kSamples")
1305 (synopsis "K-Sample rank tests and their combinations")
1307 "This package provides tools to compares k samples using the
1308 Anderson-Darling test, Kruskal-Wallis type tests with different rank score
1309 criteria, Steel's multiple comparison test, and the Jonckheere-Terpstra (JT)
1310 test. It computes asymptotic, simulated or (limited) exact P-values, all
1311 valid under randomization, with or without ties, or conditionally under random
1312 sampling from populations, given the observed tie pattern. Except for Steel's
1313 test and the JT test it also combines these tests across several blocks of
1315 (license license:gpl2+)))
1317 (define-public r-cvst
1324 (uri (cran-uri "CVST" version))
1327 "05l3yzkfrbds09ah9cdwn2sn4ryhq78lz33ryzrgkv176jc8qjw5"))))
1328 (properties `((upstream-name . "CVST")))
1329 (build-system r-build-system)
1331 `(("r-kernlab" ,r-kernlab)
1332 ("r-matrix" ,r-matrix)))
1333 (home-page "https://cran.r-project.org/web/packages/CVST")
1334 (synopsis "Fast cross-validation via sequential testing")
1336 "This package implements the fast cross-validation via sequential
1337 testing (CVST) procedure. CVST is an improved cross-validation procedure
1338 which uses non-parametric testing coupled with sequential analysis to
1339 determine the best parameter set on linearly increasing subsets of the data.
1340 Additionally to the CVST the package contains an implementation of the
1341 ordinary k-fold cross-validation with a flexible and powerful set of helper
1342 objects and methods to handle the overall model selection process. The
1343 implementations of the Cochran's Q test with permutations and the sequential
1344 testing framework of Wald are generic and can therefore also be used in other
1346 (license license:gpl2+)))
1348 (define-public r-squarem
1351 (version "2017.10-1")
1355 (uri (cran-uri "SQUAREM" version))
1358 "10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"))))
1359 (properties `((upstream-name . "SQUAREM")))
1360 (build-system r-build-system)
1361 (home-page "http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html")
1362 (synopsis "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms")
1364 "This package provides algorithms for accelerating the convergence of
1365 slow, monotone sequences from smooth, contraction mapping such as the EM
1366 algorithm. It can be used to accelerate any smooth, linearly convergent
1367 acceleration scheme. A tutorial style introduction to this package is
1368 available in a vignette.")
1369 (license license:gpl2+)))
1371 (define-public r-lava
1378 (uri (cran-uri "lava" version))
1381 "11k9npmzp3nk2qx0h1dwwfc37j4ddd9y54bppxby0ffnb8qlpw1k"))))
1382 (build-system r-build-system)
1384 `(("r-numderiv" ,r-numderiv)
1385 ("r-squarem" ,r-squarem)
1386 ("r-survival" ,r-survival)))
1387 (home-page "https://github.com/kkholst/lava")
1388 (synopsis "Latent variable models")
1390 "This package provides tools for the estimation and simulation of latent
1392 (license license:gpl3)))
1394 (define-public r-drr
1401 (uri (cran-uri "DRR" version))
1404 "1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"))))
1405 (properties `((upstream-name . "DRR")))
1406 (build-system r-build-system)
1408 `(("r-cvst" ,r-cvst)
1409 ("r-kernlab" ,r-kernlab)
1410 ("r-matrix" ,r-matrix)))
1411 (home-page "https://cran.r-project.org/web/packages/DRR")
1412 (synopsis "Dimensionality reduction via regression")
1414 "This package provides an implementation of dimensionality reduction via
1415 regression using Kernel Ridge Regression.")
1416 (license license:gpl3)))
1418 (define-public r-prodlim
1421 (version "2018.04.18")
1425 (uri (cran-uri "prodlim" version))
1428 "1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb"))))
1429 (build-system r-build-system)
1431 `(("r-kernsmooth" ,r-kernsmooth)
1434 ("r-survival" ,r-survival)))
1435 (home-page "https://cran.r-project.org/web/packages/prodlim")
1436 (synopsis "Product-limit estimation for censored event history analysis")
1438 "This package provides a fast and user-friendly implementation of
1439 nonparametric estimators for censored event history (survival) analysis with
1440 the Kaplan-Meier and Aalen-Johansen methods.")
1441 (license license:gpl2+)))
1443 (define-public r-dimred
1450 (uri (cran-uri "dimRed" version))
1453 "0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v"))))
1454 (properties `((upstream-name . "dimRed")))
1455 (build-system r-build-system)
1456 (propagated-inputs `(("r-drr" ,r-drr)))
1457 (home-page "https://github.com/gdkrmr/dimRed")
1458 (synopsis "Framework for dimensionality reduction")
1460 "This package provides a collection of dimensionality reduction
1461 techniques from R packages and provides a common interface for calling the
1463 (license license:gpl3)))
1465 (define-public r-timedate
1468 (version "3043.102")
1472 (uri (cran-uri "timeDate" version))
1475 "0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"))))
1476 (properties `((upstream-name . "timeDate")))
1477 (build-system r-build-system)
1478 (home-page "https://www.rmetrics.org")
1479 (synopsis "Chronological and calendar objects")
1481 "This package provides an environment for teaching \"Financial
1482 Engineering and Computational Finance\" and for managing chronological and
1484 (license license:gpl2+)))
1486 (define-public r-magic
1493 (uri (cran-uri "magic" version))
1496 "083cgpp3v03li0h8597b3g21pd9lkbmn9pyssblnhc800mpc52vz"))))
1497 (build-system r-build-system)
1499 `(("r-abind" ,r-abind)))
1500 (home-page "https://github.com/RobinHankin/magic.git")
1501 (synopsis "Create and investigate magic squares")
1503 "This package provides a collection of efficient, vectorized algorithms
1504 for the creation and investigation of magic squares and hypercubes, including
1505 a variety of functions for the manipulation and analysis of arbitrarily
1506 dimensioned arrays.")
1507 (license license:gpl2)))
1509 (define-public r-geometry
1516 (uri (cran-uri "geometry" version))
1519 "0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"))))
1520 (build-system r-build-system)
1521 (propagated-inputs `(("r-magic" ,r-magic)))
1522 (home-page "http://geometry.r-forge.r-project.org/")
1523 (synopsis "Mesh generation and surface tesselation")
1525 "This package makes the qhull library available in R, in a similar manner
1526 as in Octave. Qhull computes convex hulls, Delaunay triangulations, halfspace
1527 intersections about a point, Voronoi diagrams, furthest-site Delaunay
1528 triangulations, and furthest-site Voronoi diagrams. It runs in 2-d, 3-d, 4-d,
1529 and higher dimensions. It implements the Quickhull algorithm for computing
1530 the convex hull. Qhull does not support constrained Delaunay triangulations,
1531 or mesh generation of non-convex objects, but the package does include some R
1532 functions that allow for this. Currently the package only gives access to
1533 Delaunay triangulation and convex hull computation.")
1534 ;; The Qhull sources are included and are distributed under a custom
1535 ;; non-copyleft license. The R sources are released under GPL version 2.
1536 (license (list license:gpl2
1537 (license:non-copyleft "http://www.qhull.org/COPYING.txt")))))
1539 (define-public r-ddalpha
1546 (uri (cran-uri "ddalpha" version))
1549 "0g4iqhrz2gym05q40ih6srilyajw2l2mv46pchn65bc7hw4vkgrk"))))
1550 (build-system r-build-system)
1553 ("r-class" ,r-class)
1554 ("r-geometry" ,r-geometry)
1557 ("r-robustbase" ,r-robustbase)
1558 ("r-sfsmisc" ,r-sfsmisc)))
1560 `(("gfortran" ,gfortran)))
1561 (home-page "https://cran.r-project.org/web/packages/ddalpha")
1562 (synopsis "Depth-Based classification and calculation of data depth")
1564 "This package contains procedures for depth-based supervised learning,
1565 which are entirely non-parametric, in particular the DDalpha-procedure (Lange,
1566 Mosler and Mozharovskyi, 2014). The training data sample is transformed by a
1567 statistical depth function to a compact low-dimensional space, where the final
1568 classification is done. It also offers an extension to functional data and
1569 routines for calculating certain notions of statistical depth functions. 50
1570 multivariate and 5 functional classification problems are included.")
1571 (license license:gpl2)))
1573 (define-public r-gower
1580 (uri (cran-uri "gower" version))
1583 "1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"))))
1584 (build-system r-build-system)
1586 `(("r-knitr" ,r-knitr)))
1587 (home-page "https://github.com/markvanderloo/gower")
1588 (synopsis "Gower's distance")
1590 "This package provides tools to compute Gower's distance (or similarity)
1591 coefficient between records, and to compute the top-n matches between records.
1592 Core algorithms are executed in parallel on systems supporting OpenMP.")
1593 (license license:gpl3)))
1595 (define-public r-rcpproll
1602 (uri (cran-uri "RcppRoll" version))
1605 "19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"))))
1606 (properties `((upstream-name . "RcppRoll")))
1607 (build-system r-build-system)
1609 `(("r-rcpp" ,r-rcpp)))
1610 (home-page "https://cran.r-project.org/web/packages/RcppRoll")
1611 (synopsis "Efficient rolling and windowed operations")
1613 "This package provides fast and efficient routines for common rolling /
1614 windowed operations. Routines for the efficient computation of windowed mean,
1615 median, sum, product, minimum, maximum, standard deviation and variance are
1617 (license license:gpl2+)))
1619 (define-public r-ipred
1626 (uri (cran-uri "ipred" version))
1629 "1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"))))
1630 (build-system r-build-system)
1632 `(("r-class" ,r-class)
1635 ("r-prodlim" ,r-prodlim)
1636 ("r-rpart" ,r-rpart)
1637 ("r-survival" ,r-survival)))
1638 (home-page "https://cran.r-project.org/web/packages/ipred")
1639 (synopsis "Improved predictors")
1641 "This package provides improved predictive models by indirect
1642 classification and bagging for classification, regression and survival
1643 problems as well as resampling based estimators of prediction error.")
1644 (license license:gpl2+)))
1646 (define-public r-psych
1653 (uri (cran-uri "psych" version))
1656 "0daismb8pdk392vdy304hqx0m3jx62gx3a0hygjygc125rhfla7k"))))
1657 (build-system r-build-system)
1659 `(("r-foreign" ,r-foreign)
1660 ("r-lattice" ,r-lattice)
1661 ("r-mnormt" ,r-mnormt)
1662 ("r-nlme" ,r-nlme)))
1663 (home-page "https://cran.r-project.org/web/packages/psych/")
1664 (synopsis "Procedures for psychological, psychometric, and personality research")
1666 "This package provides a general purpose toolbox for personality,
1667 psychometric theory and experimental psychology. Functions are primarily for
1668 multivariate analysis and scale construction using factor analysis, principal
1669 component analysis, cluster analysis and reliability analysis, although others
1670 provide basic descriptive statistics. Item Response Theory is done using
1671 factor analysis of tetrachoric and polychoric correlations. Functions for
1672 analyzing data at multiple levels include within and between group statistics,
1673 including correlations and factor analysis. Functions for simulating and
1674 testing particular item and test structures are included. Several functions
1675 serve as a useful front end for structural equation modeling. Graphical
1676 displays of path diagrams, factor analysis and structural equation models are
1677 created using basic graphics.")
1678 (license license:gpl2+)))
1680 (define-public r-broom
1687 (uri (cran-uri "broom" version))
1690 "081x87sy6dmfvkgwfjrl5ax51k77ciyzg9x3xql25vdi92rmwj3m"))))
1691 (build-system r-build-system)
1693 `(("r-dplyr" ,r-dplyr)
1696 ("r-psych" ,r-psych)
1697 ("r-reshape2" ,r-reshape2)
1698 ("r-stringr" ,r-stringr)
1699 ("r-tidyr" ,r-tidyr)))
1700 (home-page "http://github.com/tidyverse/broom")
1701 (synopsis "Convert statistical analysis objects into tidy data frames")
1703 "This package provides tools to convert statistical analysis objects from
1704 R into tidy data frames, so that they can more easily be combined, reshaped
1705 and otherwise processed with tools like @code{dplyr}, @code{tidyr} and
1706 @code{ggplot2}. The package provides three S3 generics: @code{tidy}, which
1707 summarizes a model's statistical findings such as coefficients of a
1708 regression; @code{augment}, which adds columns to the original data such as
1709 predictions, residuals and cluster assignments; and @code{glance}, which
1710 provides a one-row summary of model-level statistics.")
1711 (license license:expat)))
1713 (define-public r-recipes
1720 (uri (cran-uri "recipes" version))
1723 "1car3a3mqn87pz049cbgkaayz86970mvkapk6al2k7jjw76306l9"))))
1724 (build-system r-build-system)
1726 `(("r-broom" ,r-broom)
1727 ("r-ddalpha" ,r-ddalpha)
1728 ("r-dimred" ,r-dimred)
1729 ("r-dplyr" ,r-dplyr)
1730 ("r-gower" ,r-gower)
1731 ("r-ipred" ,r-ipred)
1732 ("r-lubridate" ,r-lubridate)
1733 ("r-magrittr" ,r-magrittr)
1734 ("r-matrix" ,r-matrix)
1735 ("r-purrr" ,r-purrr)
1736 ("r-rcpproll" ,r-rcpproll)
1737 ("r-rlang" ,r-rlang)
1738 ("r-tibble" ,r-tibble)
1739 ("r-tidyselect" ,r-tidyselect)
1740 ("r-timedate" ,r-timedate)))
1741 (home-page "https://github.com/topepo/recipes")
1742 (synopsis "Preprocessing tools to create design matrices")
1744 "Recipes is an extensible framework to create and preprocess design
1745 matrices. Recipes consist of one or more data manipulation and analysis
1746 \"steps\". Statistical parameters for the steps can be estimated from an
1747 initial data set and then applied to other data sets. The resulting design
1748 matrices can then be used as inputs into statistical or machine learning
1750 (license license:gpl2)))
1752 (define-public r-pdist
1759 (uri (cran-uri "pdist" version))
1762 "18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"))))
1763 (build-system r-build-system)
1764 (home-page "https://github.com/jeffwong/pdist")
1765 (synopsis "Partitioned distance function")
1767 "Pdist computes the euclidean distance between rows of a matrix X and
1768 rows of another matrix Y. Previously, this could be done by binding the two
1769 matrices together and calling @code{dist}, but this creates unnecessary
1770 computation by computing the distances between a row of X and another row of
1771 X, and likewise for Y. Pdist strictly computes distances across the two
1772 matrices, not within the same matrix, making computations significantly faster
1773 for certain use cases.")
1774 (license license:gpl3+)))
1776 (define-public r-ggrepel
1783 (uri (cran-uri "ggrepel" version))
1786 "1m3p84d6nh9mzzvxb82vgig3ngcvkz86rjwzl9a66ckdf5p611k3"))))
1787 (build-system r-build-system)
1789 `(("r-ggplot2" ,r-ggplot2)
1791 ("r-scales" ,r-scales)))
1792 (home-page "http://github.com/slowkow/ggrepel")
1793 (synopsis "Repulsive text and label geometries for ggplot2")
1795 "This package provides text and label geometries for ggplot2 that help to
1796 avoid overlapping text labels. Labels repel away from each other and away
1797 from the data points.")
1798 (license license:gpl3)))
1800 (define-public r-corrplot
1807 (uri (cran-uri "corrplot" version))
1810 "1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"))))
1811 (build-system r-build-system)
1812 (home-page "https://github.com/taiyun/corrplot")
1813 (synopsis "Visualization of a correlation matrix")
1815 "This package provides a graphical display of a correlation matrix or
1816 general matrix. It also contains some algorithms to do matrix reordering. In
1817 addition, corrplot is good at details, including choosing color, text labels,
1818 color labels, layout, etc.")
1819 ;; Any version of the GPL
1820 (license license:gpl2+)))
1822 (define-public r-stringdist
1824 (name "r-stringdist")
1829 (uri (cran-uri "stringdist" version))
1832 "1qg80wmcrpkba9njvgjdg15bgw7ddks40kkfh5x61as9lhchy4i4"))))
1833 (build-system r-build-system)
1834 (home-page "https://github.com/markvanderloo/stringdist")
1835 (synopsis "Approximate string matching and string distance functions")
1837 "This package implements an approximate string matching version of R's
1838 native @code{match} function. It can calculate various string distances based
1839 on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment),
1840 qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro,
1841 Jaro-Winkler). An implementation of soundex is provided as well. Distances
1842 can be computed between character vectors while taking proper care of encoding
1843 or between integer vectors representing generic sequences.")
1844 (license license:gpl3+)))
1846 (define-public r-jomo
1853 (uri (cran-uri "jomo" version))
1856 "0zyqwa2y08asj9xqwnngh6da1b9cqcx8pzc9cxwrmgnxd5nnsjb7"))))
1857 (build-system r-build-system)
1859 `(("r-lme4" ,r-lme4)
1860 ("r-survival" ,r-survival)))
1861 (home-page "https://cran.r-project.org/web/packages/jomo/")
1862 (synopsis "Multilevel Joint Modelling Multiple Imputation")
1864 "Similarly to Schafer's package pan, jomo is a package for multilevel
1865 joint modelling multiple imputation @url{Carpenter and Kenward (2013),
1866 http://doi.org/10.1002/9781119942283}. Novel aspects of jomo are the
1867 possibility of handling binary and categorical data through latent normal
1868 variables, the option to use cluster-specific covariance matrices and to
1869 impute compatibly with the substantive model.")
1870 (license license:gpl2)))
1872 (define-public r-pan
1879 (uri (cran-uri "pan" version))
1882 "1p3nigmhrnlch86g89hn7l0wvkifx3k9n59g0psi95yck43kza76"))))
1883 (build-system r-build-system)
1884 (native-inputs `(("gfortran" ,gfortran)))
1885 (home-page "https://cran.r-project.org/web/packages/pan/")
1886 (synopsis "Multiple imputation for multivariate panel or clustered data")
1888 "This package implements multiple imputation for multivariate panel or
1890 (license license:gpl3)))
1892 (define-public r-mitml
1899 (uri (cran-uri "mitml" version))
1902 "1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb"))))
1903 (build-system r-build-system)
1905 `(("r-haven" ,r-haven)
1908 (home-page "https://cran.r-project.org/web/packages/mitml/")
1909 (synopsis "Tools for multiple imputation in multilevel modeling")
1911 "This package provides tools for multiple imputation of missing data in
1912 multilevel modeling. It includes a user-friendly interface to the packages
1913 pan and jomo, and several functions for visualization, data management and the
1914 analysis of multiply imputed data sets.")
1915 (license license:gpl2+)))
1917 (define-public r-mice
1924 (uri (cran-uri "mice" version))
1927 "1p8a5ham90iaak4w17114pdnw535r2l9sxr402yrkc4gbwfbpdlq"))))
1928 (build-system r-build-system)
1930 `(("r-broom" ,r-broom)
1931 ("r-dplyr" ,r-dplyr)
1932 ("r-lattice" ,r-lattice)
1934 ("r-mitml" ,r-mitml)
1937 ("r-rlang" ,r-rlang)
1938 ("r-rpart" ,r-rpart)
1939 ("r-survival" ,r-survival)))
1940 (home-page "https://cran.r-project.org/web/packages/mice/")
1941 (synopsis "Multivariate imputation by chained equations")
1943 "Multiple imputation using @dfn{Fully Conditional Specification} (FCS)
1944 implemented by the MICE algorithm as described in @url{Van Buuren and
1945 Groothuis-Oudshoorn (2011), http://doi.org/10.18637/jss.v045.i03}. Each
1946 variable has its own imputation model. Built-in imputation models are
1947 provided for continuous data (predictive mean matching, normal), binary
1948 data (logistic regression), unordered categorical data (polytomous logistic
1949 regression) and ordered categorical data (proportional odds). MICE can also
1950 impute continuous two-level data (normal model, pan, second-level variables).
1951 Passive imputation can be used to maintain consistency between variables.
1952 Various diagnostic plots are available to inspect the quality of the
1954 ;; Any of these two versions.
1955 (license (list license:gpl2 license:gpl3))))
1957 (define-public r-truncnorm
1959 (name "r-truncnorm")
1964 (uri (cran-uri "truncnorm" version))
1967 "0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9"))))
1968 (build-system r-build-system)
1969 (home-page "https://cran.r-project.org/web/packages/truncnorm/")
1970 (synopsis "Truncated normal distribution")
1971 (description "This package provides functions for the truncated normal
1972 distribution with mean equal to @code{mean} and standard deviation equal to
1973 @code{sd}. It includes density, distribution, quantile, and expected value
1974 functions, as well as a random generation function.")
1975 (license license:gpl2)))
1977 (define-public r-rsolnp
1984 (uri (cran-uri "Rsolnp" version))
1987 "0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"))))
1988 (properties `((upstream-name . "Rsolnp")))
1989 (build-system r-build-system)
1991 `(("r-truncnorm" ,r-truncnorm)))
1992 (home-page "https://cran.r-project.org/web/packages/Rsolnp/")
1993 (synopsis "General non-linear optimization")
1994 (description "The Rsolnp package implements a general non-linear augmented
1995 Lagrange multiplier method solver, a @dfn{sequential quadratic
1996 programming} (SQP) based solver).")
1997 ;; Any version of the GPL.
1998 (license license:gpl2+)))
2000 (define-public r-hardyweinberg
2002 (name "r-hardyweinberg")
2007 (uri (cran-uri "HardyWeinberg" version))
2010 "16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz"))))
2011 (properties `((upstream-name . "HardyWeinberg")))
2012 (build-system r-build-system)
2014 `(("r-mice" ,r-mice)
2016 ("r-rsolnp" ,r-rsolnp)))
2017 (home-page "https://cran.r-project.org/package=HardyWeinberg")
2018 (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
2020 "This package contains tools for exploring Hardy-Weinberg equilibrium for
2021 diallelic genetic marker data. All classical tests (chi-square, exact,
2022 likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
2023 included in the package, as well as functions for power computation and for
2024 the simulation of marker data under equilibrium and disequilibrium. Routines
2025 for dealing with markers on the X-chromosome are included. Functions for
2026 testing equilibrium in the presence of missing data by using multiple
2027 imputation are also provided. Implements several graphics for exploring the
2028 equilibrium status of a large set of diallelic markers: ternary plots with
2029 acceptance regions, log-ratio plots and Q-Q plots.")
2030 (license license:gpl2+)))
2039 (uri (cran-uri "sm" version))
2042 "1rw2mxygxsmk8mn4wag1ppjgzk0rlvh6zd8q02qrhjrn9jhi5qj3"))))
2043 (build-system r-build-system)
2044 (native-inputs `(("gfortran" ,gfortran)))
2045 (home-page "http://www.stats.gla.ac.uk/~adrian/sm/")
2046 (synopsis "Smoothing methods for nonparametric regression and density estimation")
2048 "This is software accompanying the book 'Applied Smoothing Techniques for
2049 Data Analysis---The Kernel Approach with S-Plus Illustrations', Oxford
2050 University Press. It provides smoothing methods for nonparametric regression
2051 and density estimation")
2052 (license license:gpl2+)))
2054 (define-public r-venndiagram
2056 (name "r-venndiagram")
2060 (uri (cran-uri "VennDiagram" version))
2063 "1ic1jaxzw98si2p4n1fl4n3myhd7fpw0njb634cwhviwybzv6775"))))
2064 (properties `((upstream-name . "VennDiagram")))
2065 (build-system r-build-system)
2067 `(("r-futile-logger" ,r-futile-logger)))
2068 (home-page "https://cran.r-project.org/web/packages/VennDiagram/")
2069 (synopsis "Generate High-Resolution Venn and Euler Plots")
2071 "This package provides a set of functions to generate high-resolution
2072 Venn and Euler plots. It includes handling for several special cases,
2073 including two-case scaling, and extensive customization of plot shape and
2075 (license license:gpl2+)))
2077 (define-public r-vioplot
2084 (uri (cran-uri "vioplot" version))
2087 "16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"))))
2088 (build-system r-build-system)
2089 (propagated-inputs `(("r-sm" ,r-sm)))
2090 (home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler")
2091 (synopsis "Violin plot")
2093 "This package provides a violin plot, which is a combination of a box
2094 plot and a kernel density plot.")
2095 (license license:bsd-3)))
2097 (define-public r-rsofia
2103 ;; This package has been removed from CRAN, so we can
2104 ;; only fetch it from the archives.
2105 (uri (string-append "https://cran.r-project.org/src/"
2106 "contrib/Archive/RSofia/RSofia_"
2110 "0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"))))
2111 (properties `((upstream-name . "RSofia")))
2112 (build-system r-build-system)
2114 `(("r-rcpp" ,r-rcpp)))
2115 (home-page "https://cran.r-project.org/src/contrib/Archive/RSofia")
2116 (synopsis "Port of sofia-ml to R")
2117 (description "This package is a port of sofia-ml to R. Sofia-ml is a
2118 suite of fast incremental algorithms for machine learning that can be used for
2119 training models for classification or ranking.")
2120 (license license:asl2.0)))
2122 (define-public r-xts
2129 (uri (cran-uri "xts" version))
2132 "1i11fczks4lh8rpi6xbm9bm7f3jpcp6xw03kv178g3n3361qhmc1"))))
2133 (build-system r-build-system)
2134 (propagated-inputs `(("r-zoo" ,r-zoo)))
2135 (native-inputs `(("gfortran" ,gfortran)))
2136 (home-page "https://github.com/joshuaulrich/xts")
2137 (synopsis "Extensible time series")
2139 "This package provides for uniform handling of R's different time-based
2140 data classes by extending @code{zoo}, maximizing native format information
2141 preservation and allowing for user-level customization and extension, while
2142 simplifying cross-class interoperability.")
2143 (license license:gpl2+)))
2145 (define-public r-performanceanalytics
2147 (name "r-performanceanalytics")
2152 (uri (cran-uri "PerformanceAnalytics" version))
2155 "01bgm57z079g6r505w3bj293zkbd49fwa8sg55z87vizwavipml6"))))
2157 `((upstream-name . "PerformanceAnalytics")))
2158 (build-system r-build-system)
2160 `(("r-quadprog" ,r-quadprog)
2163 (home-page "https://r-forge.r-project.org/projects/returnanalytics/")
2164 (synopsis "Econometric tools for performance and risk analysis")
2165 (description "This is a collection of econometric functions for
2166 performance and risk analysis. This package aims to aid practitioners and
2167 researchers in utilizing the latest research in analysis of non-normal return
2168 streams. In general, it is most tested on return (rather than price) data on
2169 a regular scale, but most functions will work with irregular return data as
2170 well, and increasing numbers of functions will work with P&L or price data
2172 ;; Either version may be picked.
2173 (license (list license:gpl2 license:gpl3))))
2175 (define-public r-laeken
2182 (uri (cran-uri "laeken" version))
2185 "1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"))))
2186 (build-system r-build-system)
2188 `(("r-boot" ,r-boot)
2189 ("r-mass" ,r-mass)))
2190 (home-page "https://cran.r-project.org/web/packages/laeken/")
2191 (synopsis "Estimation of indicators on social exclusion and poverty")
2192 (description "This package provides tools for the estimation of indicators
2193 on social exclusion and poverty, as well as an implementation of Pareto tail
2194 modeling for empirical income distributions.")
2195 (license license:gpl2+)))
2197 (define-public r-vcd
2204 (uri (cran-uri "vcd" version))
2207 "1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5"))))
2208 (build-system r-build-system)
2210 `(("r-colorspace" ,r-colorspace)
2211 ("r-lmtest" ,r-lmtest)
2212 ("r-mass" ,r-mass)))
2213 (home-page "https://cran.r-project.org/web/packages/vcd/")
2214 (synopsis "Visualizing categorical data")
2215 (description "This package provides visualization techniques, data sets,
2216 summary and inference procedures aimed particularly at categorical data.
2217 Special emphasis is given to highly extensible grid graphics. The package was
2218 originally inspired by the book \"Visualizing Categorical Data\" by Michael
2219 Friendly and is now the main support package for a new book, \"Discrete Data
2220 Analysis with R\" by Michael Friendly and David Meyer (2015).")
2221 (license license:gpl2)))
2223 (define-public r-ica
2230 (uri (cran-uri "ica" version))
2233 "0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7"))))
2234 (build-system r-build-system)
2235 (home-page "https://cran.r-project.org/web/packages/ica/")
2236 (synopsis "Independent component analysis")
2237 (description "This package provides tools for @dfn{Independent Component
2238 Analysis} (ICA) using various algorithms: FastICA,
2239 Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization
2240 of Eigenmatrices} (JADE).")
2241 (license license:gpl2+)))
2243 (define-public r-dtw
2250 (uri (cran-uri "dtw" version))
2253 "1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"))))
2254 (build-system r-build-system)
2255 (propagated-inputs `(("r-proxy" ,r-proxy)))
2256 (home-page "http://dtw.r-forge.r-project.org/")
2257 (synopsis "Dynamic Time Warping Algorithms")
2258 (description "This package provides a comprehensive implementation of
2259 @dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the
2260 optimal (least cumulative distance) alignment between points of two time
2261 series. Common DTW variants covered include local (slope) and global (window)
2262 constraints, subsequence matches, arbitrary distance definitions,
2263 normalizations, minimum variance matching, and so on.")
2264 (license license:gpl2+)))
2266 (define-public r-sdmtools
2273 (uri (cran-uri "SDMTools" version))
2276 "1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"))))
2277 (properties `((upstream-name . "SDMTools")))
2278 (build-system r-build-system)
2279 (propagated-inputs `(("r-r-utils" ,r-r-utils)))
2280 (home-page "http://www.rforge.net/SDMTools/")
2281 (synopsis "Species distribution modelling tools")
2282 (description "This packages provides a set of tools for post processing
2283 the outcomes of species distribution modeling exercises. It includes novel
2284 methods for comparing models and tracking changes in distributions through
2285 time. It further includes methods for visualizing outcomes, selecting
2286 thresholds, calculating measures of accuracy and landscape fragmentation
2288 (license license:gpl3+)))
2290 (define-public r-scatterplot3d
2292 (name "r-scatterplot3d")
2297 (uri (cran-uri "scatterplot3d" version))
2300 "152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"))))
2301 (build-system r-build-system)
2302 (home-page "https://cran.r-project.org/web/packages/scatterplot3d/")
2303 (synopsis "3D scatter plot")
2304 (description "This package provides an implementation of scatter plots for
2305 plotting. a three dimensional point cloud.")
2306 (license license:gpl2)))
2308 (define-public r-ggridges
2315 (uri (cran-uri "ggridges" version))
2318 "1znvsbl3px8dddpjgdrygnpz4s685wizi0jnjvx2hrz58i0chjqj"))))
2319 (build-system r-build-system)
2321 `(("r-ggplot2" ,r-ggplot2)
2323 ("r-scales" ,r-scales)
2324 ("r-withr" ,r-withr)))
2325 (home-page "https://github.com/clauswilke/ggridges")
2326 (synopsis "Ridgeline plots in ggplot2")
2328 "Ridgeline plots provide a convenient way of visualizing changes in
2329 distributions over time or space. This package enables the creation of such
2330 plots in @code{ggplot2}.")
2331 (license license:gpl2)))
2333 (define-public r-ggjoy
2340 (uri (cran-uri "ggjoy" version))
2343 "012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"))))
2344 (build-system r-build-system)
2346 `(("r-ggplot2" ,r-ggplot2)
2347 ("r-ggridges" ,r-ggridges)))
2348 (home-page "https://github.com/clauswilke/ggjoy")
2349 (synopsis "Joyplots in ggplot2")
2350 (description "Joyplots provide a convenient way of visualizing changes in
2351 distributions over time or space. This package enables the creation of such
2352 plots in @code{ggplot2}.")
2353 (license license:gpl2)))
2355 (define-public r-cli
2362 (uri (cran-uri "cli" version))
2365 "07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg"))))
2366 (build-system r-build-system)
2368 `(("r-assertthat" ,r-assertthat)
2369 ("r-crayon" ,r-crayon)))
2370 (home-page "https://github.com/r-lib/cli#readme")
2371 (synopsis "Helpers for developing command line interfaces")
2372 (description "This package provides a suite of tools designed to build
2373 attractive command line interfaces (CLIs). It includes tools for drawing
2374 rules, boxes, trees, and Unicode symbols with ASCII alternatives.")
2375 (license license:expat)))
2377 (define-public r-argparser
2379 (name "r-argparser")
2384 (uri (cran-uri "argparser" version))
2387 "0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"))))
2388 (build-system r-build-system)
2389 (home-page "https://bitbucket.org/djhshih/argparser")
2390 (synopsis "Command-line argument parser")
2392 "This package provides a cross-platform command-line argument parser
2393 written purely in R with no external dependencies. It is useful with the
2394 Rscript front-end and facilitates turning an R script into an executable
2396 (license license:gpl3+)))
2398 (define-public r-debugme
2405 (uri (cran-uri "debugme" version))
2408 "1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"))))
2409 (build-system r-build-system)
2410 (propagated-inputs `(("r-crayon" ,r-crayon)))
2411 (home-page "https://github.com/r-lib/debugme#readme")
2412 (synopsis "Debug R packages")
2414 "This package allows the user to specify debug messages as special string
2415 constants, and control debugging of packages via environment variables.")
2416 (license license:expat)))
2418 (define-public r-processx
2425 (uri (cran-uri "processx" version))
2428 "0wjr3cqwvnjxbvln25szffmkns5w0xysivdjr6chxap4nh515b0i"))))
2429 (build-system r-build-system)
2431 `(("r-assertthat" ,r-assertthat)
2432 ("r-crayon" ,r-crayon)
2434 ("r-testthat" ,r-testthat)))
2435 (home-page "https://github.com/r-lib/processx3")
2436 (synopsis "Execute and control system processes")
2438 "This package provides portable tools to run system processes in the
2439 background. It can check if a background process is running; wait on a
2440 background process to finish; get the exit status of finished processes; kill
2441 background processes and their children; restart processes. It can read the
2442 standard output and error of the processes, using non-blocking connections.
2443 @code{processx} can poll a process for standard output or error, with a
2444 timeout. It can also poll several processes at once.")
2445 (license license:expat)))
2447 (define-public r-tsp
2454 (uri (cran-uri "TSP" version))
2457 "1ym97xl2icjpfkrici0wig29w06bb704hp51v7h5liygjlwpkhlc"))))
2458 (properties `((upstream-name . "TSP")))
2459 (build-system r-build-system)
2460 (propagated-inputs `(("r-foreach" ,r-foreach)))
2461 (home-page "https://cran.r-project.org/web/packages/TSP/")
2462 (synopsis "Traveling salesperson problem (TSP)")
2463 (description "This package provides basic infrastructure and some
2464 algorithms for the @dfn{traveling salesperson problem}(TSP) (also known as the
2465 traveling salesman problem).")
2466 (license license:gpl3)))
2468 (define-public r-qap
2475 (uri (cran-uri "qap" version))
2478 "0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"))))
2479 (build-system r-build-system)
2480 (native-inputs `(("gfortran" ,gfortran)))
2481 (home-page "https://cran.r-project.org/web/packages/qap/")
2482 (synopsis "Heuristics for the quadratic assignment problem (QAP)")
2483 (description "This package implements heuristics for the @dfn{quadratic
2484 assignment problem} (QAP). Currently only a simulated annealing heuristic is
2486 (license license:gpl3)))
2488 (define-public r-gclus
2495 (uri (cran-uri "gclus" version))
2498 "02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"))))
2499 (build-system r-build-system)
2500 (propagated-inputs `(("r-cluster" ,r-cluster)))
2501 (home-page "https://cran.r-project.org/web/packages/gclus/")
2502 (synopsis "Clustering graphics")
2503 (description "This package orders panels in scatterplot matrices and
2504 parallel coordinate displays by some merit index. It contains various indices
2505 of merit, ordering functions, and enhanced versions of @code{pairs} and
2506 @code{parcoord} which color panels according to their merit level.")
2507 (license license:gpl2+)))
2509 (define-public r-webshot
2516 (uri (cran-uri "webshot" version))
2519 "07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh"))))
2520 (build-system r-build-system)
2522 `(("r-jsonlite" ,r-jsonlite)
2523 ("r-magrittr" ,r-magrittr)
2524 ("r-processx" ,r-processx)
2525 ("r-withr" ,r-withr)))
2526 (home-page "https://github.com/wch/webshot/")
2527 (synopsis "Take screenshots of web pages")
2529 "Webshot makes it easy to take screenshots of web pages from within R.
2530 It can also run Shiny applications locally and take screenshots of the
2531 application; and it can render and screenshot static as well as interactive R
2532 Markdown documents.")
2533 (license license:gpl2)))
2535 (define-public r-seriation
2537 (name "r-seriation")
2542 (uri (cran-uri "seriation" version))
2545 "1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92"))))
2546 (build-system r-build-system)
2548 `(("r-cluster" ,r-cluster)
2549 ("r-colorspace" ,r-colorspace)
2550 ("r-dendextend" ,r-dendextend)
2551 ("r-gclus" ,r-gclus)
2552 ("r-gplots" ,r-gplots)
2555 ("r-registry" ,r-registry)
2557 (native-inputs `(("gfortran" ,gfortran)))
2558 (home-page "http://s2.smu.edu/IDA/seriation/")
2559 (synopsis "Infrastructure for ordering objects using seriation")
2561 "This package provides infrastructure for seriation with an
2562 implementation of several seriation/sequencing techniques to reorder matrices,
2563 dissimilarity matrices, and dendrograms. It also provides (optimally)
2564 reordered heatmaps, color images and clustering visualizations like
2565 dissimilarity plots, and visual assessment of cluster tendency plots (VAT and
2567 (license license:gpl3)))
2569 (define-public r-xfun
2576 (uri (cran-uri "xfun" version))
2579 "1sm51gmwgw876d6d1q8smxmfgfh6zsnykfx8qp8z6jmh0fvd89pj"))))
2580 (build-system r-build-system)
2581 (home-page "https://github.com/yihui/xfun")
2582 (synopsis "Miscellaneous functions")
2584 "This package provides miscellaneous functions commonly used in other
2585 packages maintained by Yihui Xie.")
2586 (license license:expat)))
2588 (define-public r-utf8
2595 (uri (cran-uri "utf8" version))
2598 "0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"))))
2599 (build-system r-build-system)
2600 (home-page "https://github.com/patperry/r-utf8")
2601 (synopsis "Unicode text processing")
2603 "This package provides tools to process and print UTF-8 encoded
2604 international text (Unicode). Input, validate, normalize, encode, format, and
2606 (license license:asl2.0)))
2608 (define-public r-pillar
2615 (uri (cran-uri "pillar" version))
2618 "1rzhssprqgam1nq3s0f5rzxhxsq02azcghvxf6k8kmsmddf1n7f8"))))
2619 (build-system r-build-system)
2622 ("r-crayon" ,r-crayon)
2623 ("r-rlang" ,r-rlang)
2624 ("r-utf8" ,r-utf8)))
2625 (home-page "https://github.com/r-lib/pillar")
2626 (synopsis "Coloured formatting for columns")
2628 "This package provides a @code{pillar} generic designed for formatting
2629 columns of data using the full range of colours provided by modern
2631 (license license:gpl3)))
2633 (define-public r-uuid
2640 (uri (cran-uri "uuid" version))
2643 "1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"))))
2644 (build-system r-build-system)
2645 (home-page "http://www.rforge.net/uuid")
2646 (synopsis "Tools for generating and handling of UUIDs")
2648 "This package provides tools for generating and handling of
2649 @dfn{Universally Unique Identifiers} (UUIDs).")
2650 (license license:expat)))
2652 (define-public r-tinytex
2659 (uri (cran-uri "tinytex" version))
2662 "1pg4jfyvandjwz3lmr38pbqi9d045iwkk3xklhsfhhxq6aviq9p7"))))
2663 (build-system r-build-system)
2664 (home-page "https://github.com/yihui/tinytex")
2665 (synopsis "Helper functions for TeX Live and compiling LaTeX documents")
2667 "This package provides helper functions to install and maintain the LaTeX
2668 distribution named TinyTeX, a lightweight, cross-platform, portable, and
2669 easy-to-maintain version of TeX Live. This package also contains helper
2670 functions to compile LaTeX documents, and install missing LaTeX packages
2672 (license license:expat)))
2674 (define-public r-metap
2681 (uri (cran-uri "metap" version))
2684 "03vg0mb6q7j2z0pkxykbak0hcp6dcak7zxs1lw9hswz9kqrq5jhz"))))
2685 (build-system r-build-system)
2687 `(("r-lattice" ,r-lattice)))
2688 (home-page "http://www.dewey.myzen.co.uk/meta/meta.html")
2689 (synopsis "Meta-analysis of significance values")
2691 "The canonical way to perform meta-analysis involves using effect sizes.
2692 When they are not available this package provides a number of methods for
2693 meta-analysis of significance values including the methods of Edgington,
2694 Fisher, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate
2695 published results; and a routine for graphical display.")
2696 (license license:gpl2)))
2698 (define-public r-network
2701 (version "1.13.0.1")
2705 (uri (cran-uri "network" version))
2708 "1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0"))))
2709 (build-system r-build-system)
2710 (home-page "https://statnet.org/")
2711 (synopsis "Classes for relational data")
2713 "This package provides tools to create and modify network objects. The
2714 @code{network} class can represent a range of relational data types, and
2715 supports arbitrary vertex/edge/graph attributes.")
2716 (license license:gpl2+)))
2718 (define-public r-statnet-common
2720 (name "r-statnet-common")
2725 (uri (cran-uri "statnet.common" version))
2728 "0yw6l5b4qv0jqlg4zyczas7m12a5pyqghs6ydxy2f6v6vxkijvi0"))))
2730 `((upstream-name . "statnet.common")))
2731 (build-system r-build-system)
2732 (home-page "https://statnet.org")
2733 (synopsis "R scripts and utilities used by the Statnet software")
2734 (description "This package provides non-statistical utilities used by the
2735 software developed by the Statnet Project.")
2736 (license license:gpl3)))
2738 (define-public r-sna
2745 (uri (cran-uri "sna" version))
2748 "1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"))))
2749 (build-system r-build-system)
2751 `(("r-network" ,r-network)
2752 ("r-statnet-common" ,r-statnet-common)))
2753 (home-page "https://statnet.org")
2754 (synopsis "Tools for social network analysis")
2756 "This package provides a range of tools for social network analysis,
2757 including node and graph-level indices, structural distance and covariance
2758 methods, structural equivalence detection, network regression, random graph
2759 generation, and 2D/3D network visualization.")
2760 (license license:gpl2+)))
2762 (define-public r-ttr
2769 (uri (cran-uri "TTR" version))
2772 "07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1"))))
2773 (properties `((upstream-name . "TTR")))
2774 (build-system r-build-system)
2776 `(("r-curl" ,r-curl)
2779 (native-inputs `(("gfortran" ,gfortran)))
2780 (home-page "https://github.com/joshuaulrich/TTR")
2781 (synopsis "Technical trading rules")
2783 "This package provides functions and data to construct technical trading
2785 (license license:gpl2)))
2787 (define-public r-leaps
2794 (uri (cran-uri "leaps" version))
2797 "11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"))))
2798 (build-system r-build-system)
2799 (native-inputs `(("gfortran" ,gfortran)))
2800 (home-page "https://cran.r-project.org/web/packages/leaps/")
2801 (synopsis "Regression subset selection")
2803 "This package provides tools for regression subset selection, including
2804 exhaustive search.")
2805 (license license:gpl2+)))
2807 (define-public r-splus2r
2814 (uri (cran-uri "splus2R" version))
2817 "0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"))))
2818 (properties `((upstream-name . "splus2R")))
2819 (build-system r-build-system)
2820 (native-inputs `(("gfortran" ,gfortran)))
2821 (home-page "https://cran.r-project.org/web/packages/splus2R/")
2822 (synopsis "Supplemental S-PLUS functionality in R")
2824 "Currently there are many functions in S-PLUS that are missing in R. To
2825 facilitate the conversion of S-PLUS packages to R packages, this package
2826 provides some missing S-PLUS functionality in R.")
2827 (license license:gpl2)))
2829 (define-public r-ifultools
2831 (name "r-ifultools")
2836 (uri (cran-uri "ifultools" version))
2839 "0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"))))
2840 (build-system r-build-system)
2842 `(("r-mass" ,r-mass)
2843 ("r-splus2r" ,r-splus2r)))
2844 (home-page "https://cran.r-project.org/web/packages/ifultools/")
2845 (synopsis "Insightful research tools")
2846 (description "This package provides C code used by the wmtsa, fractal, and
2848 (license license:gpl2)))
2850 (define-public r-sapa
2857 (uri (cran-uri "sapa" version))
2860 "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"))))
2861 (build-system r-build-system)
2863 `(("r-ifultools" ,r-ifultools)
2864 ("r-splus2r" ,r-splus2r)))
2865 (home-page "https://cran.r-project.org/web/packages/sapa/")
2866 (synopsis "Spectral analysis for physical applications")
2867 (description "This package provides software for the book Spectral
2868 Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden,
2869 Cambridge University Press, 1993.")
2870 (license license:gpl2)))
2872 (define-public r-quantmod
2879 (uri (cran-uri "quantmod" version))
2882 "16aldg96z7amp5mr90nb8127yy04gxsihfr26km5p3cx3j117yv0"))))
2883 (build-system r-build-system)
2885 `(("r-curl" ,r-curl)
2889 (home-page "https://cran.r-project.org/web/packages/quantmod/")
2890 (synopsis "Quantitative financial modelling framework")
2891 (description "This package provides a quantitative financial modelling
2892 framework to allow users to specify, build, trade, and analyse quantitative
2893 financial trading strategies.")
2894 (license license:gpl3)))
2896 (define-public r-tseries
2903 (uri (cran-uri "tseries" version))
2906 "14s1glh5zzdvdl05a2z7ymhgf962svxf8xircghg5sc649lb33n0"))))
2907 (build-system r-build-system)
2909 `(("r-quadprog" ,r-quadprog)
2910 ("r-quantmod" ,r-quantmod)
2913 `(("gfortran" ,gfortran)))
2914 (home-page "https://cran.r-project.org/web/packages/tseries/")
2915 (synopsis "Time series analysis and computational finance")
2917 "This package provides functions relating to time series analysis and
2918 computational finance.")
2919 (license license:gpl2)))
2921 (define-public r-wmtsa
2928 (uri (cran-uri "wmtsa" version))
2931 "1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6"))))
2932 (build-system r-build-system)
2934 `(("r-ifultools" ,r-ifultools)
2936 ("r-splus2r" ,r-splus2r)))
2937 (home-page "https://cran.r-project.org/web/packages/wmtsa/")
2938 (synopsis "Wavelet methods for time series analysis")
2940 "This package provides software to accompany the book \"Wavelet Methods
2941 for Time Series Analysis\", Donald B. Percival and Andrew T. Walden, Cambridge
2942 University Press, 2000.")
2943 (license license:gpl2)))
2945 (define-public r-tsa
2952 (uri (cran-uri "TSA" version))
2955 "0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"))))
2956 (properties `((upstream-name . "TSA")))
2957 (build-system r-build-system)
2959 `(("r-leaps" ,r-leaps)
2960 ("r-locfit" ,r-locfit)
2962 ("r-tseries" ,r-tseries)))
2963 (home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm")
2964 (synopsis "Time series analysis")
2966 "This package contains R functions and datasets detailed in the book
2967 \"Time Series Analysis with Applications in R (second edition)\" by Jonathan
2968 Cryer and Kung-Sik Chan.")
2969 (license license:gpl2+)))
2971 (define-public r-extradistr
2973 (name "r-extradistr")
2978 (uri (cran-uri "extraDistr" version))
2981 "0ywn4qwnamv36l1hw27l9y5kh3v6ha5781wsv2bz6szqjgg7kdb3"))))
2982 (properties `((upstream-name . "extraDistr")))
2983 (build-system r-build-system)
2985 `(("r-rcpp" ,r-rcpp)))
2986 (home-page "https://github.com/twolodzko/extraDistr")
2987 (synopsis "Additional univariate and multivariate distributions")
2989 "This package implements density, distribution functions, quantile
2990 functions and random generation functions for a large number of univariate and
2991 multivariate distributions.")
2992 (license license:gpl2)))
2994 (define-public r-fractal
3001 (uri (cran-uri "fractal" version))
3004 "18lr9z0gslvfc3z8vyj3krqj3bfhg60zv1fzinrwwkc4cpk1w7mp"))))
3005 (build-system r-build-system)
3007 `(("r-ifultools" ,r-ifultools)
3010 ("r-scatterplot3d" ,r-scatterplot3d)
3011 ("r-splus2r" ,r-splus2r)
3012 ("r-wmtsa" ,r-wmtsa)))
3013 (home-page "https://cran.r-project.org/web/packages/fractal/")
3014 (synopsis "Fractal time series modeling and analysis")
3016 "This package provides tools for stochastic fractal and deterministic
3017 chaotic time series analysis.")
3018 (license license:gpl2)))
3020 (define-public r-urca
3027 (uri (cran-uri "urca" version))
3030 "1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"))))
3031 (build-system r-build-system)
3032 (propagated-inputs `(("r-nlme" ,r-nlme)))
3033 (native-inputs `(("gfortran" ,gfortran)))
3034 (home-page "https://cran.r-project.org/web/packages/urca/")
3035 (synopsis "Unit root and cointegration tests for time series data")
3037 "This package provides unit root and cointegration tests encountered in
3038 applied econometric analysis.")
3039 (license license:gpl2+)))
3041 (define-public r-cubature
3048 (uri (cran-uri "cubature" version))
3051 "06f6gsvbb732p80r6hxvzh4ik546icxfvx21dyh65ypmw3kgm64k"))))
3052 (build-system r-build-system)
3054 `(("r-rcpp" ,r-rcpp)))
3055 (home-page "https://github.com/bnaras/cubature")
3056 (synopsis "Adaptive multivariate integration over hypercubes")
3058 "This package is an R wrapper around the cubature C library for adaptive
3059 multivariate integration over hypercubes. This version provides both
3060 @code{hcubature} and @code{pcubature} routines in addition to a vector
3062 ;; The included cubature C library is released under GPLv2+, but the
3063 ;; wrapper declares the license to be GPLv3+.
3064 (license (list license:gpl2+ license:gpl3+))))
3066 (define-public r-trend
3073 (uri (cran-uri "trend" version))
3076 "06yifqbsvxbmk5gld4z2nnyhf59v8ks5xjwacmb25mv9r6bn388b"))))
3077 (build-system r-build-system)
3079 `(("r-extradistr" ,r-extradistr)))
3081 `(("gfortran" ,gfortran)))
3082 (home-page "https://cran.r-project.org/web/packages/trend/")
3083 (synopsis "Non-parametric trend tests and change-point detection")
3085 "The analysis of environmental data often requires the detection of
3086 trends and change-points. This package includes tests for trend
3087 detection (Cox-Stuart Trend Test, Mann-Kendall Trend Test, (correlated)
3088 Hirsch-Slack Test, partial Mann-Kendall Trend Test, multivariate (multisite)
3089 Mann-Kendall Trend Test, (Seasonal) Sen's slope, partial Pearson and Spearman
3090 correlation trend test), change-point detection (Lanzante's test procedures,
3091 Pettitt's test, Buishand Range Test, Buishand U Test, Standard Normal
3092 Homogeinity Test), detection of non-randomness (Wallis-Moore Phase Frequency
3093 Test, Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test) and the two
3094 sample Robust Rank-Order Distributional Test.")
3095 (license license:gpl3)))
3097 (define-public r-expm
3104 (uri (cran-uri "expm" version))
3107 "1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q"))))
3108 (build-system r-build-system)
3109 (propagated-inputs `(("r-matrix" ,r-matrix)))
3110 (native-inputs `(("gfortran" ,gfortran)))
3111 (home-page "https://r-forge.r-project.org/projects/expm/")
3112 (synopsis "Tools for matrix exponentials and related quantities")
3114 "This package provides tools for the computation of the matrix
3115 exponential, logarithm, square root, and related quantities.")
3116 (license license:gpl2+)))
3118 (define-public r-complexplus
3120 (name "r-complexplus")
3125 (uri (cran-uri "complexplus" version))
3128 "16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"))))
3129 (build-system r-build-system)
3131 `(("r-expm" ,r-expm)
3132 ("r-matrix" ,r-matrix)))
3133 (home-page "https://cran.r-project.org/web/packages/complexplus/")
3134 (synopsis "Functions of complex or real variables")
3136 "This package extends several functions to the complex domain, including
3137 the matrix exponential and logarithm, and the determinant.")
3138 (license license:gpl2)))
3140 (define-public r-phontools
3142 (name "r-phontools")
3147 (uri (cran-uri "phonTools" version))
3150 "01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"))))
3151 (properties `((upstream-name . "phonTools")))
3152 (build-system r-build-system)
3153 (home-page "http://www.santiagobarreda.com/rscripts.html")
3154 (synopsis "Tools for phonetic and acoustic analyses")
3156 "This package contains tools for the organization, display, and analysis
3157 of the sorts of data frequently encountered in phonetics research and
3158 experimentation, including the easy creation of IPA vowel plots, and the
3159 creation and manipulation of WAVE audio files.")
3160 (license license:bsd-2)))
3169 (uri (cran-uri "np" version))
3172 "17h67a510wh83800ri6g02wvznrlhigxni8shyijz1iaxcpk8k4j"))))
3173 (build-system r-build-system)
3175 `(("r-boot" ,r-boot)
3176 ("r-cubature" ,r-cubature)
3177 ("r-quadprog" ,r-quadprog)
3178 ("r-quantreg" ,r-quantreg)))
3179 (home-page "https://github.com/JeffreyRacine/R-Package-np")
3180 (synopsis "Non-parametric kernel smoothing methods for mixed data types")
3181 (description "This package provides non-parametric (and semi-parametric)
3182 kernel methods that seamlessly handle a mix of continuous, unordered, and
3183 ordered factor data types.")
3184 ;; Any version of the GPL.
3185 (license license:gpl3+)))
3187 (define-public r-powerplus
3189 (name "r-powerplus")
3194 (uri (cran-uri "powerplus" version))
3197 "0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"))))
3198 (build-system r-build-system)
3200 `(("r-complexplus" ,r-complexplus)
3203 ("r-matrix" ,r-matrix)
3204 ("r-phontools" ,r-phontools)))
3205 (home-page "https://cran.r-project.org/web/packages/powerplus/")
3206 (synopsis "Exponentiation operations")
3208 "This package provides tools for the computation of matrix and scalar
3210 (license license:gpl2)))
3212 (define-public r-heatmaply
3214 (name "r-heatmaply")
3219 (uri (cran-uri "heatmaply" version))
3222 "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc"))))
3223 (build-system r-build-system)
3225 `(("r-assertthat" ,r-assertthat)
3226 ("r-colorspace" ,r-colorspace)
3227 ("r-dendextend" ,r-dendextend)
3228 ("r-ggplot2" ,r-ggplot2)
3229 ("r-gplots" ,r-gplots)
3230 ("r-htmlwidgets" ,r-htmlwidgets)
3231 ("r-knitr" ,r-knitr) ; needed for vignettes
3232 ("r-magrittr" ,r-magrittr)
3233 ("r-plotly" ,r-plotly)
3234 ("r-rcolorbrewer" ,r-rcolorbrewer)
3235 ("r-reshape2" ,r-reshape2)
3236 ("r-scales" ,r-scales)
3237 ("r-seriation" ,r-seriation)
3238 ("r-viridis" ,r-viridis)
3239 ("r-webshot" ,r-webshot)))
3240 (home-page "https://cran.r-project.org/package=heatmaply")
3241 (synopsis "Interactive cluster heat maps using plotly")
3243 "This package enables you to create interactive cluster heatmaps that can
3244 be saved as a stand-alone HTML file, embedded in R Markdown documents or in a
3245 Shiny app, and made available in the RStudio viewer pane. Hover the mouse
3246 pointer over a cell to show details or drag a rectangle to zoom. A heatmap is
3247 a popular graphical method for visualizing high-dimensional data, in which a
3248 table of numbers is encoded as a grid of colored cells. The rows and columns
3249 of the matrix are ordered to highlight patterns and are often accompanied by
3251 ;; Either version of the license.
3252 (license (list license:gpl2 license:gpl3))))
3254 (define-public r-cgdsr
3261 (uri (cran-uri "cgdsr" version))
3264 "1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23"))))
3265 (build-system r-build-system)
3267 `(("r-r-methodss3" ,r-r-methodss3)
3268 ("r-r-oo" ,r-r-oo)))
3269 (home-page "https://github.com/cBioPortal/cgdsr")
3270 (synopsis "R-based API for accessing the MSKCC Cancer Genomics Data Server")
3272 "This package provides a basic set of R functions for querying the Cancer
3273 Genomics Data Server (CGDS), hosted by the Computational Biology Center at
3274 Memorial-Sloan-Kettering Cancer Center (MSKCC).")
3275 (license license:lgpl3)))
3277 (define-public r-import
3284 (uri (cran-uri "import" version))
3287 "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"))))
3288 (build-system r-build-system)
3289 (home-page "https://github.com/smbache/import")
3290 (synopsis "Import mechanism for R")
3292 "This is an alternative mechanism for importing objects from packages.
3293 The syntax allows for importing multiple objects from a package with a single
3294 command in an expressive way. The import package bridges some of the gap
3295 between using @code{library} (or @code{require}) and direct (single-object)
3296 imports. Furthermore the imported objects are not placed in the current
3297 environment. It is also possible to import objects from stand-alone @code{.R}
3299 (license license:expat)))
3301 (define-public r-shinyace
3308 (uri (cran-uri "shinyAce" version))
3311 "1hqgszbiv99dibhwr21v21ll4s2hjn3ccqdicsm0z3gk77bh8iyb"))))
3312 (properties `((upstream-name . "shinyAce")))
3313 (build-system r-build-system)
3315 `(("r-shiny" ,r-shiny)
3316 ("r-jsonlite" ,r-jsonlite)))
3317 (home-page "http://cran.r-project.org/web/packages/shinyAce")
3318 (synopsis "Ace editor bindings for Shiny")
3320 "This package provides Ace editor bindings to enable a rich text editing
3321 environment within Shiny.")
3322 (license license:expat)))
3324 (define-public r-radiant-data
3326 (name "r-radiant-data")
3331 (uri (cran-uri "radiant.data" version))
3334 "1ylina1jlrmvjkj8pwg0ip5jv1038vnzyckmf542xl7g11x8rvw1"))
3335 (modules '((guix build utils)))
3338 ;; Delete files that are under CC-NC-SA.
3339 (delete-file-recursively "inst/app/tools/help")
3341 (properties `((upstream-name . "radiant.data")))
3342 (build-system r-build-system)
3344 `(("r-base64enc" ,r-base64enc)
3345 ("r-broom" ,r-broom)
3348 ("r-dplyr" ,r-dplyr)
3350 ("r-ggplot2" ,r-ggplot2)
3351 ("r-gridextra" ,r-gridextra)
3352 ("r-import" ,r-import)
3353 ("r-jsonlite" ,r-jsonlite)
3354 ("r-knitr" ,r-knitr)
3355 ("r-lubridate" ,r-lubridate)
3356 ("r-magrittr" ,r-magrittr)
3357 ("r-markdown" ,r-markdown)
3359 ("r-psych" ,r-psych)
3360 ("r-readr" ,r-readr)
3361 ("r-rmarkdown" ,r-rmarkdown)
3362 ("r-rstudioapi" ,r-rstudioapi)
3363 ("r-scales" ,r-scales)
3364 ("r-shiny" ,r-shiny)
3365 ("r-shinyace" ,r-shinyace)
3366 ("r-tibble" ,r-tibble)
3367 ("r-tidyr" ,r-tidyr)))
3368 (home-page "https://github.com/radiant-rstats/radiant.data")
3369 (synopsis "Data menu for Radiant: business analytics using R and Shiny")
3371 "The Radiant Data menu includes interfaces for loading, saving, viewing,
3372 visualizing, summarizing, transforming, and combining data. It also contains
3373 functionality to generate reproducible reports of the analyses conducted in
3375 (license license:agpl3)))
3377 (define-public r-algdesign
3379 (name "r-algdesign")
3384 (uri (cran-uri "AlgDesign" version))
3387 "0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"))))
3388 (properties `((upstream-name . "AlgDesign")))
3389 (build-system r-build-system)
3390 (home-page "https://github.com/jvbraun/AlgDesign")
3391 (synopsis "Algorithmic experimental design")
3393 "This package provides tools to calculate exact and approximate theory
3394 experimental designs for D, A, and I criteria. Very large designs may be
3395 created. Experimental designs may be blocked or blocked designs created from
3396 a candidate list, using several criteria. The blocking can be done when whole
3397 and within plot factors interact.")
3398 (license license:gpl2+)))
3400 (define-public r-signal
3407 (uri (cran-uri "signal" version))
3410 "1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"))))
3411 (build-system r-build-system)
3412 (propagated-inputs `(("r-mass" ,r-mass)))
3413 (native-inputs `(("gfortran" ,gfortran)))
3414 (home-page "https://cran.r-project.org/web/packages/signal/")
3415 (synopsis "Signal processing")
3417 "This package provides a set of signal processing functions originally
3418 written for Matlab and GNU Octave. It includes filter generation utilities,
3419 filtering functions, resampling routines, and visualization of filter models.
3420 It also includes interpolation functions.")
3421 (license license:gpl2)))
3423 (define-public r-psych
3430 (uri (cran-uri "psych" version))
3433 "1kzv9nc7rwn1sj1zxd8xrbs6c7qlka7j2c8lsr4f20znkd3qx8gf"))))
3434 (build-system r-build-system)
3436 `(("r-foreign" ,r-foreign)
3437 ("r-lattice" ,r-lattice)
3438 ("r-mnormt" ,r-mnormt)
3439 ("r-nlme" ,r-nlme)))
3440 (home-page "http://cran.r-project.org/web/packages/psych")
3441 (synopsis "Procedures for psychological, psychometric, and personality research")
3443 "This package provides a general purpose toolbox for personality,
3444 psychometric theory and experimental psychology. The functions are primarily
3445 for multivariate analysis and scale construction using factor analysis,
3446 principal component analysis, cluster analysis and reliability analysis,
3447 although others provide basic descriptive statistics. It provides functions
3448 for analyzing data at multiple levels within and between group statistics,
3449 including correlations and factor analysis; functions for simulating and
3450 testing particular item and test structures are included. Several functions
3451 serve as a useful front end for structural equation modeling.")
3452 (license license:gpl2+)))
3454 (define-public r-gsubfn
3461 (uri (cran-uri "gsubfn" version))
3464 "00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"))))
3465 (build-system r-build-system)
3466 (propagated-inputs `(("r-proto" ,r-proto)))
3467 (home-page "http://gsubfn.googlecode.com")
3468 (synopsis "Utilities for strings and function arguments.")
3470 "This package provides @code{gsubfn} which is like @code{gsub} but can
3471 take a replacement function or certain other objects instead of the
3472 replacement string. Matches and back references are input to the replacement
3473 function and replaced by the function output. @code{gsubfn} can be used to
3474 split strings based on content rather than delimiters and for quasi-perl-style
3475 string interpolation. The package also has facilities for translating
3476 formulas to functions and allowing such formulas in function calls instead of
3478 (license license:gpl2+)))
3480 (define-public r-sqldf
3487 (uri (cran-uri "sqldf" version))
3490 "0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"))))
3491 (build-system r-build-system)
3493 `(("r-chron" ,r-chron)
3495 ("r-gsubfn" ,r-gsubfn)
3496 ("r-proto" ,r-proto)
3497 ("r-rsqlite" ,r-rsqlite)))
3498 (home-page "https://github.com/ggrothendieck/sqldf")
3499 (synopsis "Manipulate R data frames using SQL")
3501 "The @code{sqldf} function is typically passed a single argument which is
3502 an SQL select statement where the table names are ordinary R data frame names.
3503 @code{sqldf} transparently sets up a database, imports the data frames into
3504 that database, performs the SQL statement and returns the result using a
3505 heuristic to determine which class to assign to each column of the returned
3506 data frame. The @code{sqldf} or @code{read.csv.sql} functions can also be
3507 used to read filtered files into R even if the original files are larger than
3508 R itself can handle.")
3509 (license license:gpl2)))
3511 (define-public r-abind
3518 (uri (cran-uri "abind" version))
3521 "0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"))))
3522 (build-system r-build-system)
3523 (home-page "https://cran.r-project.org/web/packages/abind/")
3524 (synopsis "Combine multidimensional arrays")
3526 "This package provides tools to combine multidimensional arrays into a
3527 single array. This is a generalization of @code{cbind} and @code{rbind}. It
3528 works with vectors, matrices, and higher-dimensional arrays. It also provides
3529 the functions @code{adrop}, @code{asub}, and @code{afill} for manipulating,
3530 extracting and replacing data in arrays.")
3531 (license license:lgpl2.0+)))
3533 (define-public r-prroc
3540 (uri (cran-uri "PRROC" version))
3543 "03hvh92lq4i4w4mla9bvwrwb4626f4hvlxgdn57hamp70960vjyc"))))
3544 (properties `((upstream-name . "PRROC")))
3545 (build-system r-build-system)
3546 (home-page "https://cran.r-project.org/web/packages/PRROC/")
3547 (synopsis "Precision-Recall and ROC curves for weighted and unweighted data")
3549 "This package computes the areas under the @dfn{precision-recall} (PR)
3550 and ROC curve for weighted (e.g. soft-labeled) and unweighted data. In
3551 contrast to other implementations, the interpolation between points of the PR
3552 curve is done by a non-linear piecewise function. In addition to the areas
3553 under the curves, the curves themselves can also be computed and plotted by a
3554 specific S3-method.")
3555 (license license:gpl3)))
3557 (define-public r-vim
3564 (uri (cran-uri "VIM" version))
3567 "1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd"))))
3568 (properties `((upstream-name . "VIM")))
3569 (build-system r-build-system)
3572 ("r-colorspace" ,r-colorspace)
3573 ("r-data-table" ,r-data-table)
3574 ("r-e1071" ,r-e1071)
3575 ("r-laeken" ,r-laeken)
3579 ("r-robustbase" ,r-robustbase)
3582 (home-page "https://github.com/alexkowa/VIM")
3583 (synopsis "Visualization and imputation of missing values")
3585 "This package provides tools for the visualization of missing and/or
3586 imputed values are introduced, which can be used for exploring the data and
3587 the structure of the missing and/or imputed values. Depending on this
3588 structure of the missing values, the corresponding methods may help to
3589 identify the mechanism generating the missing values and allows to explore the
3590 data including missing values. In addition, the quality of imputation can be
3591 visually explored using various univariate, bivariate, multiple and
3592 multivariate plot methods.")
3593 (license license:gpl2+)))
3595 (define-public r-fnn
3602 (uri (cran-uri "FNN" version))
3605 "1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"))))
3606 (properties `((upstream-name . "FNN")))
3607 (build-system r-build-system)
3608 (home-page "https://cran.r-project.org/web/packages/FNN")
3609 (synopsis "Fast nearest neighbor search algorithms and applications")
3611 "This package provides cover-tree and kd-tree fast k-nearest neighbor
3612 search algorithms. Related applications including KNN classification,
3613 regression and information measures are implemented.")
3614 ;; The DESCRIPTION file erroneously states that GPL version 2.1 or
3615 ;; later can be used.
3616 (license license:gpl2+)))
3618 (define-public r-smoother
3625 (uri (cran-uri "smoother" version))
3628 "0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"))))
3629 (build-system r-build-system)
3631 `(("r-ttr" ,r-ttr)))
3632 (home-page "http://cran.r-project.org/web/packages/smoother")
3633 (synopsis "Functions relating to the smoothing of numerical data")
3635 "This package provides a collection of methods for smoothing numerical
3636 data, commencing with a port of the Matlab gaussian window smoothing function.
3637 In addition, several functions typically used in smoothing of financial data
3639 (license license:gpl2)))
3641 (define-public r-riverplot
3643 (name "r-riverplot")
3648 (uri (cran-uri "riverplot" version))
3651 "0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z"))))
3652 (build-system r-build-system)
3653 (home-page "https://logfc.wordpress.com")
3654 (synopsis "Sankey or ribbon plots")
3656 "Sankey plots are a type of diagram that is convenient to illustrate how
3657 flow of information, resources etc. separates and joins, much like observing
3658 how rivers split and merge. For example, they can be used to compare
3659 different clusterings. This package provides an implementation of Sankey
3661 (license license:gpl2+)))
3663 (define-public r-dyn
3670 (uri (cran-uri "dyn" version))
3673 "16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"))))
3674 (build-system r-build-system)
3676 `(("r-zoo" ,r-zoo)))
3677 (home-page "https://cran.r-project.org/web/packages/dyn")
3678 (synopsis "Time series regression")
3680 "This package provides the dyn class interfaces @code{ts}, @code{irts},
3681 @code{zoo} and @code{zooreg} time series classes to @code{lm}, @code{glm},
3682 @code{loess}, @code{quantreg::rq}, @code{MASS::rlm},
3683 @code{MCMCpack::MCMCregress()}, @code{quantreg::rq()},
3684 @code{randomForest::randomForest()} and other regression functions, allowing
3685 those functions to be used with time series including specifications that may
3686 contain lags, diffs and missing values.")
3688 (license license:gpl2+)))
3690 (define-public r-catdap
3697 (uri (cran-uri "catdap" version))
3700 "0i877l61f6c75pczi235rzci67w29zv1d7z5zn5p5ymndclvlpl2"))))
3701 (build-system r-build-system)
3703 `(("gfortran" ,gfortran)))
3704 (home-page "https://cran.r-project.org/web/packages/catdap/")
3705 (synopsis "Tools for categorical data analysis")
3707 "This package provides functions for analyzing multivariate data.
3708 Dependencies of the distribution of the specified variable (response
3709 variable) to other variables (explanatory variables) are derived and
3710 evaluated by the @dfn{Akaike Information Criterion} (AIC).")
3711 (license license:gpl2+)))
3713 (define-public r-arules
3720 (uri (cran-uri "arules" version))
3723 "0glfqgxr87900kigmkby2ff7qrjvd6aq595q85y056i5ckjcp615"))))
3724 (build-system r-build-system)
3726 `(("r-matrix" ,r-matrix)))
3727 (home-page "https://github.com/mhahsler/arules")
3728 (synopsis "Mining association rules and frequent itemsets")
3730 "This package provides an infrastructure for representing, manipulating
3731 and analyzing transaction data and patterns (frequent itemsets and association rules).
3732 It also provides C implementations of the association mining algorithms Apriori
3734 (license license:gpl3)))
3736 (define-public r-parsedate
3738 (name "r-parsedate")
3743 (uri (cran-uri "parsedate" version))
3746 "0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002"))))
3747 (build-system r-build-system)
3748 (home-page "https://github.com/gaborcsardi/parsedate")
3750 "Recognize and parse dates in various formats")
3752 "This package provides three functions for dealing with dates:
3753 @code{parse_iso_8601} recognizes and parses all valid ISO 8601 date and
3754 time formats, @code{parse_date} parses dates in unspecified formats,
3755 and @code{format_iso_8601} formats a date in ISO 8601 format.")
3756 (license license:gpl2)))
3758 (define-public r-abc-data
3765 (uri (cran-uri "abc.data" version))
3768 "1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"))))
3769 (properties `((upstream-name . "abc.data")))
3770 (build-system r-build-system)
3771 (home-page "https://cran.r-project.org/web/packages/abc.data/")
3772 (synopsis "Data for Approximate Bayesian Computation (ABC) package")
3774 "This package contains data which are used by functions of the abc
3775 package which implements several @dfn{Approximate Bayesian Computation} (ABC)
3776 algorithms for performing parameter estimation, model selection, and
3778 (license license:gpl3+)))
3780 (define-public r-abc
3787 (uri (cran-uri "abc" version))
3790 "0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"))))
3791 (build-system r-build-system)
3793 `(("r-abc-data" ,r-abc-data)
3794 ("r-locfit" ,r-locfit)
3797 ("r-quantreg" ,r-quantreg)))
3798 (home-page "https://cran.r-project.org/web/packages/abc/")
3799 (synopsis "Tools for Approximate Bayesian Computation (ABC)")
3801 "This package implements several @dfn{Approximate Bayesian
3802 Computation} (ABC) algorithms for performing parameter estimation, model
3803 selection, and goodness-of-fit. Cross-validation tools are also available for
3804 measuring the accuracy of ABC estimates, and to calculate the
3805 misclassification probabilities of different models.")
3806 (license license:gpl3+)))
3808 (define-public r-zip
3815 (uri (cran-uri "zip" version))
3818 "0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg"))))
3819 (build-system r-build-system)
3820 (home-page "https://github.com/gaborcsardi/zip")
3821 (synopsis "Cross-platform Zip compression")
3823 "This package provides a cross-platform Zip compression library for R.
3824 It is a replacement for the @code{zip} function, that does not require any
3825 additional external tools on any platform.")
3826 (license license:cc0)))
3828 (define-public r-openxlsx
3835 (uri (cran-uri "openxlsx" version))
3838 "1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb"))))
3839 (build-system r-build-system)
3841 `(("r-rcpp" ,r-rcpp)
3843 (home-page "https://github.com/awalker89/openxlsx")
3844 (synopsis "Read, write and edit XLSX files")
3846 "This package simplifies the creation of Excel @code{.xlsx} files by
3847 providing a high level interface to writing, styling and editing worksheets.
3848 Through the use of Rcpp, read/write times are comparable to the @code{xlsx}
3849 and @code{XLConnect} packages with the added benefit of removing the
3850 dependency on Java.")
3851 (license license:gpl3)))
3853 (define-public r-rio
3860 (uri (cran-uri "rio" version))
3863 "158xg3vj0glk3fslwi6fywwmfym2b6kn3fdmjligdfy5lf68khix"))))
3864 (build-system r-build-system)
3866 `(("r-curl" ,r-curl)
3867 ("r-data-table" ,r-data-table)
3868 ("r-foreign" ,r-foreign)
3869 ("r-haven" ,r-haven)
3870 ("r-openxlsx" ,r-openxlsx)
3871 ("r-readxl" ,r-readxl)
3872 ("r-tibble" ,r-tibble)))
3873 (home-page "https://github.com/leeper/rio")
3874 (synopsis "Swiss-army knife for data I/O")
3876 "This package provides streamlined data import and export infrastructure
3877 by making assumptions that the user is probably willing to make: @code{import}
3878 and @code{export} determine the data structure from the file extension,
3879 reasonable defaults are used for data import and export (e.g.,
3880 @code{stringsAsFactors=FALSE}), web-based import is natively
3881 supported (including from SSL/HTTPS), compressed files can be read directly
3882 without explicit decompression, and fast import packages are used where
3883 appropriate. An additional convenience function, @code{convert}, provides a
3884 simple method for converting between file types.")
3885 (license license:gpl2)))
3887 (define-public r-maptools
3894 (uri (cran-uri "maptools" version))
3897 "075lmb3b62171cw2dg8fv1vwmvfzg39r1ji7jwb8s5k9dz88ry1v"))))
3898 (build-system r-build-system)
3900 `(("r-foreign" ,r-foreign)
3901 ("r-lattice" ,r-lattice)
3903 (home-page "http://r-forge.r-project.org/projects/maptools/")
3904 (synopsis "Tools for reading and handling spatial objects")
3906 "This package provides a set of tools for manipulating and reading
3907 geographic data, in particular ESRI Shapefiles. It includes binary access to
3908 GSHHG shoreline files. The package also provides interface wrappers for
3909 exchanging spatial objects with other R packages.")
3910 ;; The C source files from shapelib are released under the Expat license.
3911 ;; The R code is released under GPL version 2 or later.
3912 (license (list license:gpl2+
3915 (define-public r-later
3922 (uri (cran-uri "later" version))
3925 "0l5ln7sjyi2rj7bx8iamxykqlfarv05zb9882ikizppb1cr1hgyw"))))
3926 (build-system r-build-system)
3930 ("r-rlang" ,r-rlang)))
3931 (home-page "https://github.com/r-lib/later")
3932 (synopsis "Utilities for delaying function execution")
3934 "This package provides tools to execute arbitrary R or C functions some
3935 time after the current time, after the R execution stack has emptied.")
3936 (license license:gpl2+)))
3938 (define-public r-promises
3945 (uri (cran-uri "promises" version))
3948 "0n2mlv6bvfb4yhgcml696l9vkbw21pz0smqylivr606z99rwgny2"))))
3949 (build-system r-build-system)
3951 `(("r-later" ,r-later)
3952 ("r-magrittr" ,r-magrittr)
3955 ("r-rlang" ,r-rlang)))
3956 (home-page "https://rstudio.github.io/promises")
3957 (synopsis "Abstractions for promise-based asynchronous programming")
3959 "This package provides fundamental abstractions for doing asynchronous
3960 programming in R using promises. Asynchronous programming is useful for
3961 allowing a single R process to orchestrate multiple tasks in the background
3962 while also attending to something else. Semantics are similar to JavaScript
3963 promises, but with a syntax that is idiomatic R.")
3964 (license license:expat)))
3966 (define-public r-dosnow
3973 (uri (cran-uri "doSNOW" version))
3976 "13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n"))))
3977 (properties `((upstream-name . "doSNOW")))
3978 (build-system r-build-system)
3980 `(("r-foreach" ,r-foreach)
3981 ("r-iterators" ,r-iterators)
3982 ("r-snow" ,r-snow)))
3983 (home-page "https://cran.r-project.org/web/packages/doSNOW")
3984 (synopsis "Foreach parallel adaptor for the snow package")
3986 "This package provides a parallel backend for the @code{%dopar%} function
3987 using the @code{snow} package.")
3988 (license license:gpl2)))
3990 (define-public r-snowfall
3993 (version "1.84-6.1")
3996 (uri (cran-uri "snowfall" version))
3998 (base32 "13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"))))
3999 (build-system r-build-system)
4001 `(("r-snow" ,r-snow)))
4002 (home-page "http://cran.r-project.org/web/packages/snowfall/")
4003 (synopsis "Easier cluster computing")
4004 (description "This package is a usability wrapper around snow for easier
4005 development of parallel R programs. This package offers e.g. extended error
4006 checks, and additional functions. All functions work in sequential mode, too,
4007 if no cluster is present or wished. The package is also designed as connector
4008 to the cluster management tool @code{sfCluster}, but can also used without
4010 (license license:gpl2+)))
4012 (define-public r-codedepends
4014 (name "r-codedepends")
4019 (uri (cran-uri "CodeDepends" version))
4022 "03p82s0abca2jimzqvxdzykfzca7c7fhm5xsjxybcksr4gggr5sc"))))
4023 (properties `((upstream-name . "CodeDepends")))
4024 (build-system r-build-system)
4026 `(("r-codetools" ,r-codetools)
4028 (home-page "http://cran.r-project.org/web/packages/CodeDepends")
4029 (synopsis "Analysis of R code for reproducible research and code comprehension")
4031 "This package provides tools for analyzing R expressions or blocks of
4032 code and determining the dependencies between them. It focuses on R scripts,
4033 but can be used on the bodies of functions. There are many facilities
4034 including the ability to summarize or get a high-level view of code,
4035 determining dependencies between variables, code improvement suggestions.")
4036 ;; Any version of the GPL
4037 (license (list license:gpl2+ license:gpl3+))))
4039 (define-public r-rappdirs
4046 (uri (cran-uri "rappdirs" version))
4049 "0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"))))
4050 (build-system r-build-system)
4051 (home-page "https://cran.r-project.org/web/packages/rappdirs/")
4052 (synopsis "Determine where to save data, caches, and logs")
4054 "This package provides an easy way to determine which directories on the
4055 user's computer should be used to save data, caches and logs. It is a port of
4056 Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
4057 (license license:expat)))
4059 (define-public r-learnr
4066 (uri (cran-uri "learnr" version))
4069 "1z04c1djg7ghsl7p9ypc6k5m7snahnmjy10xmrzqfayx1wkfkn9n"))))
4070 (build-system r-build-system)
4072 `(("r-evaluate" ,r-evaluate)
4073 ("r-htmltools" ,r-htmltools)
4074 ("r-htmlwidgets" ,r-htmlwidgets)
4075 ("r-jsonlite" ,r-jsonlite)
4076 ("r-knitr" ,r-knitr)
4077 ("r-markdown" ,r-markdown)
4078 ("r-rappdirs" ,r-rappdirs)
4079 ("r-rmarkdown" ,r-rmarkdown)
4080 ("r-rprojroot" ,r-rprojroot)
4081 ("r-shiny" ,r-shiny)
4082 ("r-withr" ,r-withr)))
4083 (home-page "https://rstudio.github.io/learnr/")
4084 (synopsis "Interactive tutorials for R")
4086 "This package provides tools to create interactive tutorials using R
4087 Markdown. Use a combination of narrative, figures, videos, exercises, and
4088 quizzes to create self-paced tutorials for learning about R and R packages.")
4089 (license license:asl2.0)))
4091 (define-public r-analytics
4093 (name "r-analytics")
4098 (uri (cran-uri "analytics" version))
4101 "1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6"))))
4102 (build-system r-build-system)
4105 ("r-cluster" ,r-cluster)
4106 ("r-fractal" ,r-fractal)
4107 ("r-lmtest" ,r-lmtest)
4110 ("r-powerplus" ,r-powerplus)
4111 ("r-robust" ,r-robust)
4112 ("r-trend" ,r-trend)
4114 ("r-urca" ,r-urca)))
4115 (home-page "https://cran.r-project.org/web/packages/analytics/")
4116 (synopsis "Collection of data analysis tools")
4118 "This package is a collection of data analysis tools. It includes tools
4119 for regression outlier detection in a fitted linear model, stationary
4120 bootstrap using a truncated geometric distribution, a comprehensive test for
4121 weak stationarity, column means by group, weighted biplots, and a heuristic to
4122 obtain a better initial configuration in non-metric MDS.")
4123 (license license:gpl2)))
4125 (define-public r-reticulate
4127 (name "r-reticulate")
4132 (uri (cran-uri "reticulate" version))
4135 "1ghhc4hbmwpp79ilbdbshynhs61i8sv8z6p1al04jy7ij0lcglxy"))))
4136 (build-system r-build-system)
4137 (inputs `(("python" ,python)))
4139 `(("r-jsonlite" ,r-jsonlite)
4140 ("r-matrix" ,r-matrix)
4141 ("r-rcpp" ,r-rcpp)))
4142 (home-page "https://github.com/rstudio/reticulate")
4143 (synopsis "R interface to Python")
4145 "This package provides an interface from R to Python modules, classes,
4146 and functions. When calling into Python, R data types are automatically
4147 converted to their equivalent Python types. When values are returned from
4148 Python to R they are converted back to R types.")
4149 (license license:asl2.0)))
4151 (define-public r-bibtex
4158 (uri (cran-uri "bibtex" version))
4161 "0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"))))
4162 (build-system r-build-system)
4163 (propagated-inputs `(("r-stringr" ,r-stringr)))
4164 (home-page "https://github.com/romainfrancois/bibtex")
4165 (synopsis "Bibtex parser")
4166 (description "This package provides a utility for R to parse a bibtex
4168 (license license:gpl2+)))