1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2018 Ludovic Courtès <ludo@gnu.org>
3 ;;; Copyright © 2012, 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
4 ;;; Copyright © 2013, 2017 Cyril Roelandt <tipecaml@gmail.com>
5 ;;; Copyright © 2014, 2016 David Thompson <davet@gnu.org>
6 ;;; Copyright © 2014, 2015, 2016, 2018 Mark H Weaver <mhw@netris.org>
7 ;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
8 ;;; Copyright © 2015, 2016 Sou Bunnbu <iyzsong@gmail.com>
9 ;;; Copyright © 2015 Leo Famulari <leo@famulari.name>
10 ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
11 ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
12 ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
13 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
14 ;;; Copyright © 2016, 2017 Nils Gillmann <ng0@n0.is>
15 ;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
16 ;;; Copyright © 2016 David Craven <david@craven.ch>
17 ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
18 ;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
19 ;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org>
20 ;;; Copyright © 2016, 2017, 2018 Marius Bakke <mbakke@fastmail.com>
21 ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
22 ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
23 ;;; Copyright © 2017 Jelle Licht <jlicht@fsfe.org>
24 ;;; Copyright © 2017 Adriano Peluso <catonano@gmail.com>
25 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
26 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
27 ;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com>
28 ;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
29 ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
30 ;;; Copyright © 2017, 2018 Pierre Langlois <pierre.langlois@gmx.com>
31 ;;; Copyright © 2015, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
32 ;;; Copyright © 2017 Kristofer Buffington <kristoferbuffington@gmail.com>
33 ;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
34 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
36 ;;; This file is part of GNU Guix.
38 ;;; GNU Guix is free software; you can redistribute it and/or modify it
39 ;;; under the terms of the GNU General Public License as published by
40 ;;; the Free Software Foundation; either version 3 of the License, or (at
41 ;;; your option) any later version.
43 ;;; GNU Guix is distributed in the hope that it will be useful, but
44 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
45 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
46 ;;; GNU General Public License for more details.
48 ;;; You should have received a copy of the GNU General Public License
49 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
51 (define-module (gnu packages databases)
52 #:use-module (gnu packages)
53 #:use-module (gnu packages admin)
54 #:use-module (gnu packages algebra)
55 #:use-module (gnu packages autotools)
56 #:use-module (gnu packages avahi)
57 #:use-module (gnu packages base)
58 #:use-module (gnu packages bash)
59 #:use-module (gnu packages bison)
60 #:use-module (gnu packages boost)
61 #:use-module (gnu packages check)
62 #:use-module (gnu packages cmake)
63 #:use-module (gnu packages compression)
64 #:use-module (gnu packages crypto)
65 #:use-module (gnu packages curl)
66 #:use-module (gnu packages cyrus-sasl)
67 #:use-module (gnu packages emacs)
68 #:use-module (gnu packages gettext)
69 #:use-module (gnu packages glib)
70 #:use-module (gnu packages gnupg)
71 #:use-module (gnu packages guile)
72 #:use-module (gnu packages time)
73 #:use-module (gnu packages golang)
74 #:use-module (gnu packages jemalloc)
75 #:use-module (gnu packages language)
76 #:use-module (gnu packages libevent)
77 #:use-module (gnu packages linux)
78 #:use-module (gnu packages man)
79 #:use-module (gnu packages ncurses)
80 #:use-module (gnu packages parallel)
81 #:use-module (gnu packages pcre)
82 #:use-module (gnu packages perl)
83 #:use-module (gnu packages perl-check)
84 #:use-module (gnu packages pkg-config)
85 #:use-module (gnu packages popt)
86 #:use-module (gnu packages python)
87 #:use-module (gnu packages python-crypto)
88 #:use-module (gnu packages rdf)
89 #:use-module (gnu packages readline)
90 #:use-module (gnu packages ruby)
91 #:use-module (gnu packages serialization)
92 #:use-module (gnu packages statistics)
93 #:use-module (gnu packages tcl)
94 #:use-module (gnu packages terminals)
95 #:use-module (gnu packages textutils)
96 #:use-module (gnu packages tls)
97 #:use-module (gnu packages valgrind)
98 #:use-module (gnu packages web)
99 #:use-module (gnu packages xml)
100 #:use-module ((guix licenses) #:prefix license:)
101 #:use-module (guix packages)
102 #:use-module (guix download)
103 #:use-module (guix git-download)
104 #:use-module (guix build-system gnu)
105 #:use-module (guix build-system go)
106 #:use-module (guix build-system perl)
107 #:use-module (guix build-system python)
108 #:use-module (guix build-system ruby)
109 #:use-module (guix build-system cmake)
110 #:use-module (guix build-system r)
111 #:use-module (guix build-system scons)
112 #:use-module ((guix build utils) #:hide (which))
113 #:use-module (guix utils)
114 #:use-module (srfi srfi-1)
115 #:use-module (srfi srfi-26)
116 #:use-module (ice-9 match))
118 (define-public 4store
124 (uri (string-append "https://github.com/4store/4store/archive/v"
126 (file-name (string-append name "-" version ".tar.gz"))
128 (base32 "004fmcf1w75zhc1x3zc6kc97j4jqn2v5nhk6yb3z3cpfrhzi9j50"))
129 (patches (search-patches "4store-unset-preprocessor-directive.patch"
130 "4store-fix-buildsystem.patch"))))
131 (build-system gnu-build-system)
135 ("autoconf" ,autoconf)
136 ("automake" ,automake)
137 ("gettext" ,gettext-minimal)
139 ("pcre" ,pcre "bin") ;for 'pcre-config'
140 ("pkg-config" ,pkg-config)))
146 ("readline" ,readline)
148 ("cyrus-sasl" ,cyrus-sasl)
150 ("util-linux" ,util-linux)))
153 (modify-phases %standard-phases
154 (add-after 'unpack 'generate-configure
156 (zero? (system* "sh" "autogen.sh")))))))
157 ;; http://www.4store.org has been down for a while now.
158 (home-page "https://github.com/4store/4store")
159 (synopsis "Clustered RDF storage and query engine")
160 (description "4store is a RDF/SPARQL store written in C, supporting
161 either single machines or networked clusters.")
162 (license license:gpl3+)))
170 (uri (string-append "mirror://gnu/gdbm/gdbm-"
174 "1kimnv12bzjjhaqk4c8w2j6chdj9c6bg21lchaf7abcyfss2r0mq"))))
175 (arguments `(#:configure-flags '("--enable-libgdbm-compat")))
176 (build-system gnu-build-system)
177 (home-page "http://www.gnu.org.ua/software/gdbm")
179 "Hash library of database functions compatible with traditional dbm")
181 "GDBM is a library for manipulating hashed databases. It is used to
182 store key/value pairs in a file in a manner similar to the Unix dbm library
183 and provides interfaces to the traditional file format.")
184 (license license:gpl3+)))
186 (define-public go-gopkg.in-mgo.v2
188 (name "go-gopkg.in-mgo.v2")
189 (version "2016.08.01")
193 (url "https://github.com/go-mgo/mgo")
194 (commit (string-append "r" version))))
195 (file-name (git-file-name name version))
198 "0rwbi1z63w43b0z9srm8m7iz1fdwx7bq7n2mz862d6liiaqa59jd"))))
199 (build-system go-build-system)
201 `(#:import-path "gopkg.in/mgo.v2"
202 ;; TODO: The tests fail as MongoDB fails to start
203 ;; Error parsing command line: unrecognised option '--chunkSize'
206 (modify-phases %standard-phases
207 (delete 'reset-gzip-timestamps)
208 (add-before 'check 'start-mongodb
209 (lambda* (#:key tests? #:allow-other-keys)
211 (with-directory-excursion "src/gopkg.in/mgo.v2"
212 (invoke "make" "startdb")))))
213 (add-after 'check 'stop'mongodb
214 (lambda* (#:key tests? #:allow-other-keys)
216 (with-directory-excursion "src/gopkg.in/mgo.v2"
217 (invoke "make" "stopdb"))))))))
219 `(("go-gopkg.in-check.v1" ,go-gopkg.in-check.v1)
221 ("daemontools" ,daemontools)))
222 (synopsis "@code{mgo} offers a rich MongoDB driver for Go.")
224 "@code{mgo} (pronounced as mango) is a MongoDB driver for the Go language.
225 It implements a rich selection of features under a simple API following
226 standard Go idioms.")
227 (home-page "http://labix.org/mgo")
228 (license license:bsd-2)))
236 (uri (string-append "http://download.oracle.com/berkeley-db/db-"
240 "1yx8wzhch5wwh016nh0kfxvknjkafv6ybkqh6nh7lxx50jqf5id9"))))
241 (build-system gnu-build-system)
242 (outputs '("out" ; programs, libraries, headers
243 "doc")) ; 94 MiB of HTML docs
245 '(#:tests? #f ; no check target available
246 #:disallowed-references ("doc")
248 (modify-phases %standard-phases
250 (lambda* (#:key outputs #:allow-other-keys)
251 (let ((out (assoc-ref outputs "out"))
252 (doc (assoc-ref outputs "doc")))
253 ;; '--docdir' is not honored, so we need to patch.
254 (substitute* "dist/Makefile.in"
255 (("docdir[[:blank:]]*=.*")
256 (string-append "docdir = " doc "/share/doc/bdb")))
258 (invoke "./dist/configure"
259 (string-append "--prefix=" out)
260 (string-append "CONFIG_SHELL=" (which "bash"))
261 (string-append "SHELL=" (which "bash"))
263 ;; Remove 7 MiB of .a files.
266 ;; The compatibility mode is needed by some packages,
270 ;; The following flag is needed so that the inclusion
271 ;; of db_cxx.h into C++ files works; it leads to
272 ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h.
273 "--enable-cxx")))))))
274 (synopsis "Berkeley database")
276 "Berkeley DB is an embeddable database allowing developers the choice of
277 SQL, Key/Value, XML/XQuery or Java Object storage for their data model.")
278 ;; Starting with version 6, BDB is distributed under AGPL3. Many individual
279 ;; files are covered by the 3-clause BSD license.
280 (license (list license:agpl3+ license:bsd-3))
282 "http://www.oracle.com/us/products/database/berkeley-db/overview/index.html")))
284 (define-public bdb-5.3
285 (package (inherit bdb)
288 (license (license:non-copyleft "file://LICENSE"
289 "See LICENSE in the distribution."))
292 (uri (string-append "http://download.oracle.com/berkeley-db/db-"
296 "0a1n5hbl7027fbz5lm0vp0zzfp1hmxnz14wx3zl9563h83br5ag0"))))
298 `(#:tests? #f ; no check target available
299 #:disallowed-references ("doc")
301 (modify-phases %standard-phases
303 (lambda* (#:key outputs #:allow-other-keys)
304 (let ((out (assoc-ref outputs "out"))
305 (doc (assoc-ref outputs "doc")))
306 ;; '--docdir' is not honored, so we need to patch.
307 (substitute* "dist/Makefile.in"
308 (("docdir[[:blank:]]*=.*")
309 (string-append "docdir = " doc "/share/doc/bdb")))
311 (invoke "./dist/configure"
312 (string-append "--prefix=" out)
313 (string-append "CONFIG_SHELL=" (which "bash"))
314 (string-append "SHELL=" (which "bash"))
316 ;; Bdb doesn't recognize aarch64 as an architecture.
317 ,@(if (string=? "aarch64-linux" (%current-system))
318 '("--build=aarch64-unknown-linux-gnu")
321 ;; Remove 7 MiB of .a files.
324 ;; The compatibility mode is needed by some packages,
328 ;; The following flag is needed so that the inclusion
329 ;; of db_cxx.h into C++ files works; it leads to
330 ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h.
331 "--enable-cxx")))))))))
333 (define-public es-dump-restore
335 (name "es-dump-restore")
340 (uri (rubygems-uri "es_dump_restore" version))
343 "020yk7f1hw48clmf5501z3xv9shsdchyymcv0y2cci2c1xvr1mim"))))
344 (build-system ruby-build-system)
346 '(#:tests? #f)) ;; No testsuite.
348 `(("ruby-httpclient" ,ruby-httpclient)
349 ("ruby-multi-json" ,ruby-multi-json)
350 ("ruby-progress_bar" ,ruby-progress_bar)
351 ("ruby-rubyzip" ,ruby-rubyzip)
352 ("ruby-thor" ,ruby-thor)))
353 (synopsis "Utility for dumping and restoring ElasticSearch indexes")
355 "This package provides a utility for dumping the contents of an
356 ElasticSearch index to a compressed file and restoring the dumpfile back to an
357 ElasticSearch server")
358 (home-page "https://github.com/patientslikeme/es_dump_restore")
359 (license license:expat)))
361 (define-public leveldb
367 (uri (string-append "https://github.com/google/leveldb"
368 "/archive/v" version ".tar.gz"))
369 (file-name (string-append name "-" version ".tar.gz"))
372 "0r36bcrj6b2afsp4aw1gjai3jbs1c7734pxpc1jz7hh9nasyiazm"))))
373 (build-system gnu-build-system)
375 '(#:make-flags (list "CC=gcc")
377 (modify-phases %standard-phases
380 ;; There is no install target, so we do it here.
381 (lambda* (#:key outputs #:allow-other-keys)
382 (let* ((out (assoc-ref outputs "out"))
383 (lib (string-append out "/lib"))
384 (include (string-append out "/include")))
385 (for-each (lambda (file)
386 (install-file file lib))
387 (find-files "out-shared" "^libleveldb\\.so.*$"))
388 (copy-recursively "include" include)
391 `(("snappy" ,snappy)))
392 (home-page "http://leveldb.org/")
393 (synopsis "Fast key-value storage library")
395 "LevelDB is a fast key-value storage library that provides an ordered
396 mapping from string keys to string values.")
397 (license license:bsd-3)))
399 (define-public memcached
407 "https://memcached.org/files/memcached-" version ".tar.gz"))
410 "0jqw3z0408yx0lzc6ykn4d29n02dk31kqnmq9b3ldmcnpl6hck29"))))
411 (build-system gnu-build-system)
413 `(("libevent" ,libevent)
414 ("cyrus-sasl" ,cyrus-sasl)))
415 (home-page "https://memcached.org/")
416 (synopsis "In-memory caching service")
417 (description "Memcached is an in-memory key-value store. It has a small
418 and generic API, and was originally intended for use with dynamic web
420 (license license:bsd-3)))
422 (define-public mongodb
428 (uri (string-append "https://github.com/mongodb/mongo/archive/r"
430 (file-name (string-append name "-" version ".tar.gz"))
432 (base32 "0676lvkljj7a5hdhv78dbykqnqrj9lbn9799mi84b8vbnzsq961r"))
433 (modules '((guix build utils)))
436 (for-each (lambda (dir)
437 (delete-file-recursively
438 (string-append "src/third_party/" dir)))
439 '("pcre-8.41" "scons-2.5.0" "snappy-1.1.3"
440 "valgrind-3.11.0" "wiredtiger"
441 "yaml-cpp-0.5.3" "zlib-1.2.8"))
445 (search-patch "mongodb-support-unknown-linux-distributions.patch")))))
446 (build-system scons-build-system)
448 `(("openssl" ,openssl)
450 ,@(match (%current-system)
451 ((or "x86_64-linux" "aarch64-linux" "mips64el-linux")
452 `(("wiredtiger" ,wiredtiger)))
454 ("yaml-cpp" ,yaml-cpp)
458 `(("valgrind" ,valgrind)
460 ("python" ,python2-minimal)
461 ("python2-pymongo" ,python2-pymongo)
462 ("python2-pyyaml" ,python2-pyyaml)
465 `(#:scons ,scons-python2
467 (let ((common-options
468 `(;; "--use-system-tcmalloc" TODO: Missing gperftools
470 ;; wiredtiger is 64-bit only
471 ,,(if (any (cute string-prefix? <> (or (%current-target-system)
473 '("i686-linux" "armhf-linux"))
475 ``"--use-system-wiredtiger")
477 ;; build/opt/mongo/db/fts/unicode/string.o failed: Error 1
478 ;; --use-system-boost
479 "--use-system-snappy"
481 "--use-system-valgrind"
482 ;; "--use-system-stemmer" TODO: Missing relevant package
484 "--disable-warnings-as-errors"
485 ,(format #f "--jobs=~a" (parallel-job-count))
487 (modify-phases %standard-phases
488 (add-after 'unpack 'scons-propagate-environment
490 ;; Modify the SConstruct file to arrange for
491 ;; environment variables to be propagated.
492 (substitute* "SConstruct"
493 (("^env = Environment\\(")
494 "env = Environment(ENV=os.environ, "))
496 (add-after 'unpack 'create-version-file
498 (call-with-output-file "version.json"
500 (display ,(simple-format #f "{
506 (apply invoke `("scons"
508 "mongod" "mongo" "mongos"))))
510 (lambda* (#:key tests? inputs #:allow-other-keys)
512 (string-append (assoc-ref inputs "tzdata")
515 ;; Note that with the tests, especially the unittests, the
516 ;; build can take up to ~45GB of space, as many tests are
517 ;; individual executable files, with some being hundreds of
518 ;; megabytes in size.
521 invoke `("scons" ,@common-options "dbtest" "unittests"))
522 (substitute* "build/unittests.txt"
523 ;; TODO: Don't run the async_stream_test, as it hangs
524 (("^build\\/opt\\/mongo\\/executor\\/async\\_stream\\_test\n$")
526 ;; TODO: This test fails
527 ;; Expected 0UL != disks.size() (0 != 0) @src/mongo/util/procparser_test.cpp:476
528 (("^build\\/opt\\/mongo\\/util\\/procparser\\_test\n$")
530 (invoke "python" "buildscripts/resmoke.py"
531 "--suites=dbtest,unittests"
532 (format #f "--jobs=~a" (parallel-job-count)))))))
535 (let ((bin (string-append (assoc-ref %outputs "out") "/bin")))
536 (install-file "mongod" bin)
537 (install-file "mongos" bin)
538 (install-file "mongo" bin))
540 (home-page "https://www.mongodb.org/")
541 (synopsis "High performance and high availability document database")
543 "Mongo is a high-performance, high availability, schema-free
544 document-oriented database. A key goal of MongoDB is to bridge the gap
545 between key/value stores (which are fast and highly scalable) and traditional
546 RDBMS systems (which are deep in functionality).")
547 (license (list license:agpl3
548 ;; Some parts are licensed under the Apache License
551 ;; XXX When updating, check whether boost-for-mysql is still needed.
552 ;; It might suffice to patch ‘cmake/boost.cmake’ as done in the past.
559 (uri (list (string-append
560 "https://dev.mysql.com/get/Downloads/MySQL-"
561 (version-major+minor version) "/"
562 name "-" version ".tar.gz")
564 "https://downloads.mysql.com/archives/get/file/"
565 name "-" version ".tar.gz")))
568 "0rbc3xsc11lq2dm0ip6gxa16c06hi74scb97x5cw7yhbabaz4c07"))))
569 (build-system cmake-build-system)
572 '("-DBUILD_CONFIG=mysql_release"
575 "-DDEFAULT_CHARSET=utf8"
576 "-DDEFAULT_COLLATION=utf8_general_ci"
577 "-DMYSQL_DATADIR=/var/lib/mysql"
578 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
579 "-DINSTALL_INFODIR=share/mysql/docs"
580 "-DINSTALL_MANDIR=share/man"
581 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
582 "-DINSTALL_SCRIPTDIR=bin"
583 "-DINSTALL_INCLUDEDIR=include/mysql"
584 "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
585 "-DINSTALL_SUPPORTFILESDIR=share/mysql"
586 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
587 "-DINSTALL_DOCDIR=share/mysql/docs"
588 "-DINSTALL_SHAREDIR=share/mysql"
589 ;; Get rid of test data.
590 "-DINSTALL_MYSQLTESTDIR="
591 "-DINSTALL_SQLBENCHDIR=")
592 #:phases (modify-phases %standard-phases
594 'install 'remove-extra-binaries
595 (lambda* (#:key outputs #:allow-other-keys)
596 (let ((out (assoc-ref outputs "out")))
597 ;; Remove the 3 *_embedded files, which weigh in at
599 (for-each delete-file
600 (find-files (string-append out "/bin")
607 `(("boost" ,boost-for-mysql)
612 (home-page "https://www.mysql.com/")
613 (synopsis "Fast, easy to use, and popular database")
615 "MySQL is a fast, reliable, and easy to use relational database
616 management system that supports the standardized Structured Query
618 (license license:gpl2)))
620 (define-public mariadb
626 (uri (string-append "https://downloads.mariadb.org/f/"
627 name "-" version "/source/"
628 name "-" version ".tar.gz"))
631 "0n5aj76mn9rxc21l2kjmfrg10bmsyy4cic68khjr94iby262wx5d"))
632 (patches (search-patches "mariadb-client-test-32bit.patch"))
633 (modules '((guix build utils)))
636 ;; Delete bundled snappy and xz.
637 (delete-file-recursively "storage/tokudb/PerconaFT/third_party")
638 (substitute* "storage/tokudb/PerconaFT/CMakeLists.txt"
639 ;; This file checks that the bundled sources are present and
640 ;; declares build procedures for them.
641 (("^include\\(TokuThirdParty\\)") ""))
642 (substitute* "storage/tokudb/PerconaFT/ft/CMakeLists.txt"
643 ;; Don't attempt to use the procedures we just removed.
644 ((" build_lzma build_snappy") ""))
646 ;; Preserve CMakeLists.txt for these.
647 (for-each (lambda (file)
648 (unless (string-suffix? "CMakeLists.txt" file)
650 (append (find-files "extra/yassl")
651 (find-files "pcre") (find-files "zlib")))
653 (build-system cmake-build-system)
656 '("-DBUILD_CONFIG=mysql_release"
657 ;; Linking with libarchive fails, like this:
659 ;; ld: /gnu/store/...-libarchive-3.2.2/lib/libarchive.a(archive_entry.o):
660 ;; relocation R_X86_64_32 against `.bss' can not be used when
661 ;; making a shared object; recompile with -fPIC
663 ;; For now, disable the features that that use libarchive (xtrabackup).
664 "-DWITH_LIBARCHIVE=OFF"
666 ;; Ensure the system libraries are used.
667 "-DWITH_JEMALLOC=yes"
672 "-DDEFAULT_CHARSET=utf8"
673 "-DDEFAULT_COLLATION=utf8_general_ci"
674 "-DMYSQL_DATADIR=/var/lib/mysql"
675 "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
676 "-DINSTALL_INFODIR=share/mysql/docs"
677 "-DINSTALL_MANDIR=share/man"
678 "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
679 "-DINSTALL_SCRIPTDIR=bin"
680 "-DINSTALL_INCLUDEDIR=include/mysql"
681 "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
682 "-DINSTALL_SUPPORTFILESDIR=share/mysql/support-files"
683 "-DINSTALL_MYSQLSHAREDIR=share/mysql"
684 "-DINSTALL_DOCDIR=share/mysql/docs"
685 "-DINSTALL_SHAREDIR=share")
687 (modify-phases %standard-phases
688 (add-after 'unpack 'fix-pcre-detection
690 ;; The bundled PCRE in MariaDB has a patch that was upstreamed
691 ;; in version 8.34. Unfortunately the upstream patch behaves
692 ;; slightly differently and the build system fails to detect it.
693 ;; See <https://bugs.exim.org/show_bug.cgi?id=2173>.
694 ;; XXX: Consider patching PCRE instead.
695 (substitute* "cmake/pcre.cmake"
696 ((" OR NOT PCRE_STACK_SIZE_OK") ""))
698 (add-after 'unpack 'adjust-tests
700 (let ((disabled-tests
701 '(;; These fail because root@hostname == root@localhost in
702 ;; the build environment, causing a user count mismatch.
703 ;; See <https://jira.mariadb.org/browse/MDEV-7761>.
705 "main.explain_non_select"
706 "main.stat_tables_innodb"
707 "roles.acl_statistics"
709 ;; FIXME: This test fails on i686:
710 ;; -myisampack: Can't create/write to file (Errcode: 17 "File exists")
711 ;; +myisampack: Can't create/write to file (Errcode: 17 "File exists)
712 ;; When running "myisampack --join=foo/t3 foo/t1 foo/t2"
713 ;; (all three tables must exist and be identical)
714 ;; in a loop it produces the same error around 1/240 times.
715 ;; montywi on #maria suggested removing the real_end check in
716 ;; "strings/my_vsnprintf.c" on line 503, yet it still does not
717 ;; reach the ending quote occasionally. Disable it for now.
719 ;; FIXME: This test fails on armhf-linux:
720 "mroonga/storage.index_read_multiple_double"))
722 ;; This file contains a list of known-flaky tests for this
723 ;; release. Append our own items.
724 (unstable-tests (open-file "mysql-test/unstable-tests" "a")))
725 (for-each (lambda (test)
726 (format unstable-tests "~a : ~a\n"
727 test "Disabled in Guix"))
729 (close-port unstable-tests)
731 (substitute* "mysql-test/mysql-test-run.pl"
732 (("/bin/ls") (which "ls"))
733 (("/bin/sh") (which "sh")))
735 (add-before 'configure 'disable-plugins
737 (let ((disable-plugin (lambda (name)
738 (call-with-output-file
739 (string-append "plugin/" name
742 (format port "\n")))))
743 (disabled-plugins '(;; XXX: Causes a test failure.
745 (for-each disable-plugin disabled-plugins)
748 (lambda* (#:key (tests? #t) #:allow-other-keys)
750 (with-directory-excursion "mysql-test"
751 (invoke "./mtr" "--verbose"
753 "--testcase-timeout=40"
754 "--suite-timeout=600"
755 "--parallel" (number->string (parallel-job-count))
756 "--skip-test-list=unstable-tests"))
757 (format #t "test suite not run~%"))
760 'install 'post-install
761 (lambda* (#:key outputs #:allow-other-keys)
762 (let* ((out (assoc-ref outputs "out"))
763 (test (assoc-ref outputs "test")))
764 (substitute* (string-append out "/bin/mysql_install_db")
766 (string-append "basedir=\"" out "\"")))
767 ;; Remove unneeded files for testing.
768 (with-directory-excursion out
769 (for-each delete-file-recursively
770 '("data" "mysql-test" "sql-bench"
771 "share/man/man1/mysql-test-run.pl.1"))
772 ;; Delete huge and unnecessary executables.
773 (for-each delete-file (find-files "bin" "(test|embedded)"))
774 ;; And static libraries.
775 (for-each delete-file (find-files "lib" "\\.a$")))
781 `(("jemalloc" ,jemalloc)
790 ;; mariadb.pc says -lssl -lcrypto, so propagate it.
791 `(("openssl" ,openssl)))
792 ;; The test suite is very resource intensive and can take more than three
793 ;; hours on a x86_64 system. Give slow and busy machines some leeway.
794 (properties '((timeout . 64800))) ;18 hours
795 (home-page "https://mariadb.org/")
796 (synopsis "SQL database server")
798 "MariaDB is a multi-user and multi-threaded SQL database server, designed
799 as a drop-in replacement of MySQL.")
800 (license license:gpl2)))
802 ;; Don't forget to update the other postgresql packages when upgrading this one.
803 (define-public postgresql
809 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
810 version "/postgresql-" version ".tar.bz2"))
813 "04a07jkvc5s6zgh6jr78149kcjmsxclizsqabjw44ld4j5n633kc"))))
814 (build-system gnu-build-system)
816 `(#:configure-flags '("--with-uuid=e2fs")
818 (modify-phases %standard-phases
819 (add-before 'configure 'patch-/bin/sh
821 ;; Refer to the actual shell.
822 (substitute* '("src/bin/pg_ctl/pg_ctl.c"
823 "src/bin/psql/command.c")
824 (("/bin/sh") (which "sh")))
826 (add-after 'build 'build-contrib
828 (invoke "make" "-C" "contrib")))
829 (add-after 'install 'install-contrib
831 (invoke "make" "-C" "contrib" "install"))))))
833 `(("readline" ,readline)
834 ("libuuid" ,util-linux)
836 (home-page "https://www.postgresql.org/")
837 (synopsis "Powerful object-relational database system")
839 "PostgreSQL is a powerful object-relational database system. It is fully
840 ACID compliant, has full support for foreign keys, joins, views, triggers, and
841 stored procedures (in multiple languages). It includes most SQL:2008 data
842 types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and
843 TIMESTAMP. It also supports storage of binary large objects, including
844 pictures, sounds, or video.")
845 (license (license:x11-style "file://COPYRIGHT"))))
847 (define-public postgresql-9.6
854 (uri (string-append "https://ftp.postgresql.org/pub/source/v"
855 version "/postgresql-" version ".tar.bz2"))
858 "0c55akrkzqd6p6a8hr0338wk246hl76r9j16p4zn3s51d7f0l99q"))))))
860 (define-public python-pymysql
862 (name "python-pymysql")
867 (uri (pypi-uri "PyMySQL" version))
870 "0gvi63f1zq1bbd30x28kqyx351hal1yc323ckp0mihainb5n1iwy"))))
871 (build-system python-build-system)
873 `(("python-unittest2" ,python-unittest2)))
875 `(("python-cryptography" ,python-cryptography)))
877 `(#:tests? #f)) ; tests expect a running MySQL
878 (home-page "https://github.com/PyMySQL/PyMySQL/")
879 (synopsis "Pure-Python MySQL driver")
881 "PyMySQL is a pure-Python MySQL client library, based on PEP 249.
882 Most public APIs are compatible with @command{mysqlclient} and MySQLdb.")
883 (license license:expat)))
885 (define-public python2-pymysql
886 (package-with-python2 python-pymysql))
895 (uri (string-append "http://fallabs.com/" name "/"
896 name "-" version ".tar.gz"))
899 "0gmpvhn02pkq280ffmn4da1g4mdr1xxz7l80b7y4n7km1mrzwrml"))))
900 (build-system gnu-build-system)
902 `( #:configure-flags (list (string-append "LDFLAGS=-Wl,-rpath="
903 (assoc-ref %outputs "out")
905 (home-page "http://fallabs.com/qdbm")
906 (synopsis "Key-value database")
907 (description "QDBM is a library of routines for managing a
908 database. The database is a simple data file containing key-value
909 pairs. Every key and value is serial bytes with variable length.
910 Binary data as well as character strings can be used as a key or a
911 value. There is no concept of data tables or data types. Records are
912 organized in a hash table or B+ tree.")
913 (license license:lgpl2.1+)))
915 (define-public recutils
921 (uri (string-append "mirror://gnu/recutils/recutils-"
925 "0cdwa4094x3yx7vn98xykvnlp9rngvd58d19vs3vh5hrvggccg93"))
926 (modules '((guix build utils)))
929 ;; Adjust the bundled gnulib to work with glibc 2.28. See e.g.
930 ;; "m4-gnulib-libio.patch". This is a phase rather than patch
931 ;; or snippet to work around <https://bugs.gnu.org/32347>.
932 (substitute* (find-files "lib" "\\.c$")
933 (("#if defined _IO_ftrylockfile")
934 "#if defined _IO_EOF_SEEN"))
935 (substitute* "lib/stdio-impl.h"
936 (("^/\\* BSD stdio derived implementations")
937 (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n"
938 "# define _IO_IN_BACKUP 0x100\n"
940 "/* BSD stdio derived implementations")))
942 (build-system gnu-build-system)
944 ;; Running tests in parallel leads to test failures and crashes in
946 (arguments '(#:parallel-tests? #f
948 (list (string-append "--with-bash-headers="
949 (assoc-ref %build-inputs "bash:include")
952 #:phases (modify-phases %standard-phases
953 (add-before 'build 'set-bash4.4-header-location
955 (substitute* "bash/Makefile.in"
956 ;; Adjust the header search path for Bash
957 ;; 4.4 in accordance with 'bash.pc'.
958 (("AM_CPPFLAGS = (.*)$" _ rest)
959 (string-append "AM_CPPFLAGS = "
960 "-I$(BASH_HEADERS)/include "
963 ;; Install to PREFIX/lib/bash to match Bash
964 ;; 4.4's search path.
966 "libdir = @libdir@/bash\n"))
969 (native-inputs `(("emacs" ,emacs-minimal)
971 ("bash:include" ,bash "include")
972 ("libuuid" ,util-linux)))
974 ;; TODO: Add more optional inputs.
975 (inputs `(("curl" ,curl)
976 ("libgcrypt" ,libgcrypt)
978 (synopsis "Manipulate plain text files as databases")
980 "GNU Recutils is a set of tools and libraries for creating and
981 manipulating text-based, human-editable databases. Despite being text-based,
982 databases created with Recutils carry all of the expected features such as
983 unique fields, primary keys, time stamps and more. Many different field
984 types are supported, as is encryption.")
985 (license license:gpl3+)
986 (home-page "https://www.gnu.org/software/recutils/")))
988 (define-public rocksdb
995 (url "https://github.com/facebook/rocksdb")
996 (commit (string-append "v" version))))
997 (file-name (git-file-name name version))
1000 "0q26frbj9pykarcfa0yxgwncxlvsqhjkby0jrbfs1a8srja688r4"))
1001 (modules '((guix build utils)))
1004 ;; TODO: unbundle gtest.
1005 (delete-file "build_tools/gnu_parallel")
1006 (substitute* "Makefile"
1007 (("build_tools/gnu_parallel") "parallel"))
1009 (build-system gnu-build-system)
1011 `(#:make-flags (list "CC=gcc" "V=1"
1012 ;; Ceph requires that RTTI is enabled.
1014 (string-append "INSTALL_PATH="
1015 (assoc-ref %outputs "out"))
1017 ;; Running the full test suite takes hours and require
1018 ;; a lot of disk space. Instead we only run a subset
1019 ;; (see .travis.yml and Makefile).
1020 "ROCKSDBTESTS_END=db_tailing_iter_test")
1021 #:test-target "check_some"
1022 ;; Many tests fail on 32-bit platforms. There are multiple reports about
1023 ;; this upstream, but it's not going to be supported any time soon.
1024 #:tests? (let ((system ,(or (%current-target-system)
1025 (%current-system))))
1026 (or (string-prefix? "x86_64-linux" system)
1027 (string-prefix? "aarch64-linux" system)))
1029 (modify-phases %standard-phases
1030 (add-after 'unpack 'patch-Makefile
1032 (substitute* "Makefile"
1033 ;; Don't depend on the static library when installing.
1034 (("install: install-static")
1035 "install: install-shared")
1036 (("#!/bin/sh") (string-append "#!" (which "sh"))))
1039 ;; The default target is only needed for tests and built on demand.
1041 (add-before 'check 'disable-optimizations
1043 ;; Prevent the build from passing '-march=native' to the compiler.
1044 (setenv "PORTABLE" "1")
1046 (add-before 'check 'disable-failing-tests
1048 (substitute* "Makefile"
1049 ;; These tests reliably fail due to "Too many open files".
1050 (("^[[:blank:]]+env_test[[:blank:]]+\\\\") "\\")
1051 (("^[[:blank:]]+persistent_cache_test[[:blank:]]+\\\\") "\\"))
1053 (add-after 'check 'build
1054 ;; The default build target is a debug build for tests. The
1055 ;; install target depends on the "shared_lib" release target
1056 ;; so we build it here for clarity.
1057 (lambda* (#:key (make-flags '()) parallel-build? #:allow-other-keys)
1058 (apply invoke "make" "shared_lib"
1059 `(,@(if parallel-build?
1060 `("-j" ,(number->string (parallel-job-count)))
1064 `(("parallel" ,parallel)
1067 ("python" ,python-2)
1072 ("jemalloc" ,jemalloc)
1076 (home-page "http://rocksdb.org/")
1077 (synopsis "Persistent key-value store for fast storage")
1079 "RocksDB is a library that forms the core building block for a fast
1080 key-value server, especially suited for storing data on flash drives. It
1081 has a @dfn{Log-Structured-Merge-Database} (LSM) design with flexible tradeoffs
1082 between @dfn{Write-Amplification-Factor} (WAF), @dfn{Read-Amplification-Factor}
1083 (RAF) and @dfn{Space-Amplification-Factor} (SAF). It has multi-threaded
1084 compactions, making it specially suitable for storing multiple terabytes of
1085 data in a single database. RocksDB is partially based on @code{LevelDB}.")
1086 ;; RocksDB is dual licensed under GPL2 and ASL 2.0. Some header
1087 ;; files carry the 3-clause BSD license.
1088 (license (list license:gpl2 license:asl2.0 license:bsd-3))))
1090 (define-public sparql-query
1092 (name "sparql-query")
1096 (uri (string-append "https://github.com/tialaramex/"
1097 name "/archive/" version ".tar.gz"))
1099 (base32 "0yq3k20472rv8npcc420q9ab6idy584g5y0q501d360k5q0ggr8w"))
1100 (file-name (string-append name "-" version ".tar.gz"))))
1101 (build-system gnu-build-system)
1103 `(("readline" ,readline)
1104 ("ncurses" ,ncurses)
1106 ("libxml2" ,libxml2)
1109 `(("pkg-config" ,pkg-config)))
1111 `(#:make-flags '("CC=gcc")
1113 (modify-phases %standard-phases
1115 ;; The Makefile uses git to obtain versioning information. This phase
1116 ;; substitutes the git invocation with the package version.
1117 (add-after 'unpack 'remove-git-dependency
1119 (substitute* "Makefile"
1121 (string-append "gitrev = \"v" ,version "\"")))))
1122 ;; The install phase of the Makefile assumes $PREFIX/usr/local/bin.
1123 ;; This replacement does the same thing, except for using $PREFIX/bin
1126 (lambda* (#:key outputs #:allow-other-keys)
1127 (let* ((out (assoc-ref outputs "out"))
1128 (bin (string-append out "/bin")))
1129 (install-file "sparql-query" bin)
1130 (system* "ln" "--symbolic"
1131 (string-append bin "/sparql-query")
1132 (string-append bin "/sparql-update")))))
1134 (lambda* (#:key make-flags #:allow-other-keys)
1136 (zero? (apply system* "make" `(,@make-flags "scan-test")))
1137 (zero? (system "./scan-test"))))))))
1138 (home-page "https://github.com/tialaramex/sparql-query/")
1139 (synopsis "Command-line tool for accessing SPARQL endpoints over HTTP")
1140 (description "Sparql-query is a command-line tool for accessing SPARQL
1141 endpoints over HTTP. It has been intentionally designed to 'feel' similar to
1142 tools for interrogating SQL databases. For example, you can enter a query over
1143 several lines, using a semi-colon at the end of a line to indicate the end of
1144 your query. It also supports readline so that you can more easily recall and
1145 edit previous queries, even across sessions. It can be used non-interactively,
1146 for example from a shell script.")
1147 ;; Some files (like scan-sparql.c) contain a GPLv3+ license header, while
1148 ;; others (like sparql-query.c) contain a GPLv2+ license header.
1149 (license (list license:gpl3+))))
1151 (define-public sqlcrush
1152 ;; Unfortunately, there is no proper upstream release and may never be.
1153 (let ((commit "b5f6868f189566a26eecc78d0f0659813c1aa98a")
1157 (version (git-version "0.1.5" revision commit))
1161 (url "https://github.com/coffeeandscripts/sqlcrush.git")
1163 (file-name (git-file-name name version))
1166 "0x3wy40r93p0jv3nbwj9a77wa4ff697d13r0wffmm7q9h3mzsww8"))))
1167 (build-system python-build-system)
1169 `(("python-cryptography" ,python-cryptography)
1170 ("python-psycopg2" ,python-psycopg2)
1171 ("python-pymysql" ,python-pymysql)
1172 ("python-sqlalchemy" ,python-sqlalchemy)))
1173 (home-page "https://github.com/coffeeandscripts/sqlcrush")
1174 (synopsis "Text console-based database viewer and editor")
1176 "SQLcrush lets you view and edit a database directly from the text
1177 console through an ncurses interface. You can explore each table's structure,
1178 browse and edit the contents, add and delete entries, all while tracking your
1180 (license license:gpl3+)))) ; no headers, see README.md
1182 (define-public sqlite
1188 (uri (let ((numeric-version
1189 (match (string-split version #\.)
1190 ((first-digit other-digits ...)
1191 (string-append first-digit
1194 (map (cut string-pad <> 2 #\0)
1197 (string-append "https://sqlite.org/2018/sqlite-autoconf-"
1198 numeric-version ".tar.gz")))
1201 "0jmprv2vpggzhy7ma4ynmv1jzn3pfiwzkld0kkg6hvgvqs44xlfr"))))
1202 (build-system gnu-build-system)
1203 (inputs `(("readline" ,readline)))
1206 ;; Add -DSQLITE_SECURE_DELETE, -DSQLITE_ENABLE_UNLOCK_NOTIFY and
1207 ;; -DSQLITE_ENABLE_DBSTAT_VTAB to CFLAGS. GNU Icecat will refuse
1208 ;; to use the system SQLite unless these options are enabled.
1209 (list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
1210 "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
1211 "-DSQLITE_ENABLE_DBSTAT_VTAB"))))
1212 (home-page "https://www.sqlite.org/")
1213 (synopsis "The SQLite database management system")
1215 "SQLite is a software library that implements a self-contained, serverless,
1216 zero-configuration, transactional SQL database engine. SQLite is the most
1217 widely deployed SQL database engine in the world. The source code for SQLite
1218 is in the public domain.")
1219 (license license:public-domain)))
1221 ;; This is used by Tracker.
1222 (define-public sqlite-with-fts5
1223 (package (inherit sqlite)
1224 (name "sqlite-with-fts5")
1226 (substitute-keyword-arguments (package-arguments sqlite)
1227 ((#:configure-flags flags)
1228 `(cons "--enable-fts5" ,flags))))))
1230 ;; This is used by Qt.
1231 (define-public sqlite-with-column-metadata
1232 (package (inherit sqlite)
1233 (name "sqlite-with-column-metadata")
1235 (substitute-keyword-arguments (package-arguments sqlite)
1236 ((#:configure-flags flags)
1237 `(list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE "
1238 "-DSQLITE_ENABLE_UNLOCK_NOTIFY "
1239 "-DSQLITE_ENABLE_DBSTAT_VTAB "
1240 "-DSQLITE_ENABLE_COLUMN_METADATA")))))))
1248 (uri (string-append "https://www.samba.org/ftp/tdb/tdb-"
1252 "1ibcz466xwk1x6xvzlgzd5va4lyrjzm3rnjak29kkwk7cmhw4gva"))))
1253 (build-system gnu-build-system)
1256 (modify-phases %standard-phases
1258 (lambda* (#:key outputs #:allow-other-keys)
1259 (let ((out (assoc-ref outputs "out")))
1260 ;; The 'configure' script is a wrapper for Waf and
1261 ;; doesn't recognize things like '--enable-fast-install'.
1262 (zero? (system* "./configure"
1263 (string-append "--prefix=" out)))))))))
1265 `(;; TODO: Build the documentation.
1266 ;; ("docbook-xsl" ,docbook-xsl)
1267 ;; ("libxml2" ,libxml2)
1268 ;; ("libxslt" ,libxslt)
1269 ("python" ,python-2))) ;for the Waf build system
1270 (home-page "https://tdb.samba.org/")
1271 (synopsis "Trivial database")
1273 "TDB is a Trivial Database. In concept, it is very much like GDBM,
1274 and BSD's DB except that it allows multiple simultaneous writers and uses
1275 locking internally to keep writers from trampling on each other. TDB is also
1277 (license license:lgpl3+)))
1279 (define-public perl-dbi
1286 "mirror://cpan/authors/id/T/TI/TIMB/DBI-"
1290 "1hf2x29bnqf2x1v4bdhji802z7n2mbg7h1amv8gdkqyhrlrfa2am"))))
1291 (build-system perl-build-system)
1292 (synopsis "Database independent interface for Perl")
1293 (description "This package provides an database interface for Perl.")
1294 (home-page "https://metacpan.org/release/DBI")
1295 (license license:perl-license)))
1297 (define-public perl-dbix-class
1299 (name "perl-dbix-class")
1300 (version "0.082841")
1304 (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
1305 "DBIx-Class-" version ".tar.gz"))
1308 "1gf3hgv8f9rnr8bl4ljgsqk4aliphmvljhsk4282kvdc4mcgh1fp"))))
1309 (build-system perl-build-system)
1311 `(("perl-dbd-sqlite" ,perl-dbd-sqlite)
1312 ("perl-file-temp" ,perl-file-temp)
1313 ("perl-module-install" ,perl-module-install)
1314 ("perl-package-stash" ,perl-package-stash)
1315 ("perl-test-deep" ,perl-test-deep)
1316 ("perl-test-exception" ,perl-test-exception)
1317 ("perl-test-warn" ,perl-test-warn)))
1319 `(("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1320 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1321 ("perl-class-inspector" ,perl-class-inspector)
1322 ("perl-config-any" ,perl-config-any)
1323 ("perl-context-preserve" ,perl-context-preserve)
1324 ("perl-data-dumper-concise" ,perl-data-dumper-concise)
1325 ("perl-data-page" ,perl-data-page)
1326 ("perl-dbi" ,perl-dbi)
1327 ("perl-devel-globaldestruction" ,perl-devel-globaldestruction)
1328 ("perl-hash-merge" ,perl-hash-merge)
1329 ("perl-module-find" ,perl-module-find)
1330 ("perl-moo" ,perl-moo)
1331 ("perl-mro-compat" ,perl-mro-compat)
1332 ("perl-namespace-clean" ,perl-namespace-clean)
1333 ("perl-path-class" ,perl-path-class)
1334 ("perl-scalar-list-utils" ,perl-scalar-list-utils)
1335 ("perl-scope-guard" ,perl-scope-guard)
1336 ("perl-sql-abstract" ,perl-sql-abstract)
1337 ("perl-sub-name" ,perl-sub-name)
1338 ("perl-text-balanced" ,perl-text-balanced)
1339 ("perl-try-tiny" ,perl-try-tiny)))
1340 (home-page "https://metacpan.org/release/DBIx-Class")
1341 (synopsis "Extensible and flexible object <-> relational mapper")
1342 (description "An SQL to OO mapper with an object API inspired by
1343 Class::DBI (with a compatibility layer as a springboard for porting) and a
1344 resultset API that allows abstract encapsulation of database operations. It
1345 aims to make representing queries in your code as perl-ish as possible while
1346 still providing access to as many of the capabilities of the database as
1347 possible, including retrieving related records from multiple tables in a
1348 single query, \"JOIN\", \"LEFT JOIN\", \"COUNT\", \"DISTINCT\", \"GROUP BY\",
1349 \"ORDER BY\" and \"HAVING\" support.")
1350 (license license:perl-license)))
1352 (define-public perl-dbix-class-cursor-cached
1354 (name "perl-dbix-class-cursor-cached")
1355 (version "1.001004")
1359 (uri (string-append "mirror://cpan/authors/id/A/AR/ARCANEZ/"
1360 "DBIx-Class-Cursor-Cached-" version ".tar.gz"))
1363 "09b2jahn2x12qm4f7qm1jzsxbz7qn1czp6a3fnl5l2i3l4r5421p"))))
1364 (build-system perl-build-system)
1366 `(("perl-cache-cache" ,perl-cache-cache)
1367 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1368 ("perl-module-install" ,perl-module-install)))
1370 `(("perl-carp-clan" ,perl-carp-clan)
1371 ("perl-dbix-class" ,perl-dbix-class)))
1372 (home-page "https://metacpan.org/release/DBIx-Class-Cursor-Cached")
1373 (synopsis "Cursor with built-in caching support")
1374 (description "DBIx::Class::Cursor::Cached provides a cursor class with
1375 built-in caching support.")
1376 (license license:perl-license)))
1378 (define-public perl-dbix-class-introspectablem2m
1380 (name "perl-dbix-class-introspectablem2m")
1381 (version "0.001002")
1385 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1386 "DBIx-Class-IntrospectableM2M-" version ".tar.gz"))
1389 "1w47rh2241iy5x3a9bqsyd5kdp9sk43dksr99frzv4qn4jsazfn6"))))
1390 (build-system perl-build-system)
1392 `(("perl-module-install" ,perl-module-install)))
1394 `(("perl-dbix-class" ,perl-dbix-class)))
1395 (home-page "https://metacpan.org/release/DBIx-Class-IntrospectableM2M")
1396 (synopsis "Introspect many-to-many relationships")
1397 (description "Because the many-to-many relationships are not real
1398 relationships, they can not be introspected with DBIx::Class. Many-to-many
1399 relationships are actually just a collection of convenience methods installed
1400 to bridge two relationships. This DBIx::Class component can be used to store
1401 all relevant information about these non-relationships so they can later be
1402 introspected and examined.")
1403 (license license:perl-license)))
1405 (define-public perl-dbix-class-schema-loader
1407 (name "perl-dbix-class-schema-loader")
1412 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1413 "DBIx-Class-Schema-Loader-" version ".tar.gz"))
1416 "0r57fv71ypxafb85cpxph1hdqii7ipjwvc19yb6fpkvq2ggcssg8"))))
1417 (build-system perl-build-system)
1419 `(("perl-config-any" ,perl-config-any)
1420 ("perl-config-general" ,perl-config-general)
1421 ("perl-dbd-sqlite" ,perl-dbd-sqlite)
1422 ("perl-dbix-class-introspectablem2m" ,perl-dbix-class-introspectablem2m)
1423 ("perl-module-install" ,perl-module-install)
1424 ("perl-moose" ,perl-moose)
1425 ("perl-moosex-markasmethods" ,perl-moosex-markasmethods)
1426 ("perl-moosex-nonmoose" ,perl-moosex-nonmoose)
1427 ("perl-namespace-autoclean" ,perl-namespace-autoclean)
1428 ("perl-test-deep" ,perl-test-deep)
1429 ("perl-test-differences" ,perl-test-differences)
1430 ("perl-test-exception" ,perl-test-exception)
1431 ("perl-test-pod" ,perl-test-pod)
1432 ("perl-test-warn" ,perl-test-warn)))
1434 `(("perl-class-unload" ,perl-class-unload)
1435 ("perl-class-inspector" ,perl-class-inspector)
1436 ("perl-class-accessor-grouped" ,perl-class-accessor-grouped)
1437 ("perl-class-c3-componentised" ,perl-class-c3-componentised)
1438 ("perl-carp-clan" ,perl-carp-clan)
1439 ("perl-data-dump" ,perl-data-dump)
1440 ("perl-dbix-class" ,perl-dbix-class)
1441 ("perl-hash-merge" ,perl-hash-merge)
1442 ("perl-list-moreutils" ,perl-list-moreutils)
1443 ("perl-lingua-en-inflect-phrase" ,perl-lingua-en-inflect-phrase)
1444 ("perl-lingua-en-inflect-number" ,perl-lingua-en-inflect-number)
1445 ("perl-lingua-en-tagger" ,perl-lingua-en-tagger)
1446 ("perl-namespace-clean" ,perl-namespace-clean)
1447 ("perl-mro-compat" ,perl-mro-compat)
1448 ("perl-scope-guard" ,perl-scope-guard)
1449 ("perl-string-camelcase" ,perl-string-camelcase)
1450 ("perl-string-toidentifier-en" ,perl-string-toidentifier-en)
1451 ("perl-sub-name" ,perl-sub-name)
1452 ("perl-try-tiny" ,perl-try-tiny)))
1453 (arguments `(#:tests? #f)) ;TODO: t/20invocations.t fails
1454 (home-page "https://metacpan.org/release/DBIx-Class-Schema-Loader")
1455 (synopsis "Create a DBIx::Class::Schema based on a database")
1456 (description "DBIx::Class::Schema::Loader automates the definition of a
1457 DBIx::Class::Schema by scanning database table definitions and setting up the
1458 columns, primary keys, unique constraints and relationships.")
1459 (license license:perl-license)))
1461 (define-public perl-dbd-pg
1463 (name "perl-dbd-pg")
1468 (uri (string-append "mirror://cpan/authors/id/T/TU/TURNSTEP/"
1469 "DBD-Pg-" version ".tar.gz"))
1472 "0gkqlvbmzbdm0g4k328nlkjdg3wrjm5i2n9jxj1i8sqxkm79rylz"))))
1473 (build-system perl-build-system)
1475 `(("perl-dbi" ,perl-dbi)))
1477 `(("perl-dbi" ,perl-dbi)
1478 ("postgresql" ,postgresql)))
1479 (home-page "https://metacpan.org/release/DBD-Pg")
1480 (synopsis "DBI PostgreSQL interface")
1481 (description "This package provides a PostgreSQL driver for the Perl5
1482 @dfn{Database Interface} (DBI).")
1483 (license license:perl-license)))
1485 (define-public perl-dbd-mysql
1487 (name "perl-dbd-mysql")
1492 (uri (string-append "mirror://cpan/authors/id/M/MI/MICHIELB/"
1493 "DBD-mysql-" version ".tar.gz"))
1496 "1zqmch6c9gq06z90mkmk1skajk2kaggriw19ym5w04l7wv5gydqp"))))
1497 (build-system perl-build-system)
1500 (modify-phases %standard-phases
1501 (add-before 'configure 'skip-library-detection
1502 ;; Avoid depencies on perl-devel-checklib, openssl, and zlib. They
1503 ;; are really only needed for the test suite; their absence does not
1504 ;; affect the build or the end result.
1506 (substitute* "Makefile.PL"
1507 (("use Devel::CheckLib;" match)
1508 (string-append "# " match))
1512 ;; Tests require running MySQL server.
1515 `(("perl-dbi" ,perl-dbi)
1517 (home-page "https://metacpan.org/release/DBD-mysql")
1518 (synopsis "DBI MySQL interface")
1519 (description "This package provides a MySQL driver for the Perl5
1520 @dfn{Database Interface} (DBI).")
1521 (license license:perl-license)))
1523 (define-public perl-dbd-sqlite
1525 (name "perl-dbd-sqlite")
1530 "mirror://cpan/authors/id/I/IS/ISHIGAKI/DBD-SQLite-"
1534 "0fqx386jgs9mmrknr7smmzapf07izgivza7x08lfm39ks2cxs83i"))))
1535 (build-system perl-build-system)
1536 (inputs `(("sqlite" ,sqlite)))
1537 (propagated-inputs `(("perl-dbi" ,perl-dbi)))
1538 (synopsis "SQlite interface for Perl")
1539 (description "DBD::SQLite is a Perl DBI driver for SQLite, that includes
1540 the entire thing in the distribution. So in order to get a fast transaction
1541 capable RDBMS working for your Perl project you simply have to install this
1542 module, and nothing else.")
1543 (license license:perl-license)
1544 (home-page "https://metacpan.org/release/DBD-SQLite")))
1546 (define-public perl-sql-abstract
1548 (name "perl-sql-abstract")
1553 (uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
1554 "SQL-Abstract-" version ".tar.gz"))
1557 "1aycggrvppy2zgkwwn85jkdz93n5gsx4dambrjk67k5067hayi4z"))))
1558 (build-system perl-build-system)
1560 `(("perl-module-install" ,perl-module-install)
1561 ("perl-test-deep" ,perl-test-deep)
1562 ("perl-test-exception" ,perl-test-exception)
1563 ("perl-test-warn" ,perl-test-warn)))
1565 `(("perl-hash-merge" ,perl-hash-merge)
1566 ("perl-moo" ,perl-moo)
1567 ("perl-mro-compat" ,perl-mro-compat)
1568 ("perl-text-balanced" ,perl-text-balanced)))
1569 (home-page "https://metacpan.org/release/SQL-Abstract")
1570 (synopsis "Generate SQL from Perl data structures")
1571 (description "This module was inspired by the excellent DBIx::Abstract.
1572 While based on the concepts used by DBIx::Abstract, the concepts used have
1573 been modified to make the SQL easier to generate from Perl data structures.
1574 The underlying idea is for this module to do what you mean, based on the data
1575 structures you provide it, so that you don't have to modify your code every
1576 time your data changes.")
1577 (license license:perl-license)))
1579 (define-public perl-sql-splitstatement
1581 (name "perl-sql-splitstatement")
1586 (uri (string-append "mirror://cpan/authors/id/E/EM/EMAZEP/"
1587 "SQL-SplitStatement-" version ".tar.gz"))
1590 "0bqg45k4c9qkb2ypynlwhpvzsl4ssfagmsalys18s5c79ps30z7p"))))
1591 (build-system perl-build-system)
1593 `(("perl-test-exception" ,perl-test-exception)))
1595 `(("perl-class-accessor" ,perl-class-accessor)
1596 ("perl-list-moreutils" ,perl-list-moreutils)
1597 ("perl-regexp-common" ,perl-regexp-common)
1598 ("perl-sql-tokenizer" ,perl-sql-tokenizer)))
1599 (home-page "https://metacpan.org/release/SQL-SplitStatement")
1600 (synopsis "Split SQL code into atomic statements")
1601 (description "This module tries to split any SQL code, even including
1602 non-standard extensions, into the atomic statements it is composed of.")
1603 (license license:perl-license)))
1605 (define-public perl-sql-tokenizer
1607 (name "perl-sql-tokenizer")
1612 (uri (string-append "mirror://cpan/authors/id/I/IZ/IZUT/"
1613 "SQL-Tokenizer-" version ".tar.gz"))
1616 "1qa2dfbzdlr5qqdam9yn78z5w3al5r8577x06qan8wv58ay6ka7s"))))
1617 (build-system perl-build-system)
1618 (home-page "https://metacpan.org/release/SQL-Tokenizer")
1619 (synopsis "SQL tokenizer")
1620 (description "SQL::Tokenizer is a tokenizer for SQL queries. It does not
1621 claim to be a parser or query verifier. It just creates sane tokens from a
1623 (license license:perl-license)))
1625 (define-public unixodbc
1633 "ftp://ftp.unixodbc.org/pub/unixODBC/unixODBC-"
1636 (base32 "0xry3sg497wly8f7715a7gwkn2k36bcap0mvzjw74jj53yx6kwa5"))))
1637 (build-system gnu-build-system)
1638 (synopsis "Data source abstraction library")
1639 (description "Unixodbc is a library providing an API with which to access
1640 data sources. Data sources include SQL Servers and any software with an ODBC
1642 (license license:lgpl2.1+)
1643 ;; COPYING contains copy of lgpl2.1 - but copyright notices just say "LGPL"
1644 (home-page "http://www.unixodbc.org")))
1646 (define-public unqlite
1652 ;; Contains bug fixes against the official release, and has an
1653 ;; autotooled build system.
1654 (uri (string-append "https://github.com/aidin36/tocc/releases/"
1656 "unqlite-unofficial-" version ".tar.gz"))
1659 "1sbpvhg15gadq0mpcy16q7k3rkg4b4dicpnn5xifpkpn02sqik3s"))))
1660 (build-system gnu-build-system)
1661 (arguments `(#:tests? #f)) ;No check target
1662 (home-page "http://www.unqlite.org")
1663 (synopsis "In-memory key/value and document store")
1665 "UnQLite is an in-process software library which implements a
1666 self-contained, serverless, zero-configuration, transactional NoSQL
1667 database engine. UnQLite is a document store database similar to
1668 MongoDB, Redis, CouchDB, etc. as well as a standard Key/Value store
1669 similar to BerkeleyDB, LevelDB, etc.")
1670 (license license:bsd-2)))
1672 (define-public redis
1678 (uri (string-append "http://download.redis.io/releases/redis-"
1682 "194cydhv3hf4v95ifvjvsqrs4jn3ffrkg5lvxj5d3y04lwsp9dhx"))))
1683 (build-system gnu-build-system)
1685 '(#:tests? #f ; tests related to master/slave and replication fail
1686 #:phases (modify-phases %standard-phases
1687 (delete 'configure))
1688 #:make-flags `("CC=gcc"
1691 ,(string-append "PREFIX="
1692 (assoc-ref %outputs "out")))))
1693 (synopsis "Key-value cache and store")
1694 (description "Redis is an advanced key-value cache and store. Redis
1695 supports many data structures including strings, hashes, lists, sets, sorted
1696 sets, bitmaps and hyperloglogs.")
1697 (home-page "http://redis.io/")
1698 (license license:bsd-3)))
1700 (define-public kyotocabinet
1702 (name "kyotocabinet")
1706 (uri (string-append "http://fallabs.com/kyotocabinet/pkg/"
1707 name "-" version ".tar.gz"))
1710 "0g6js20x7vnpq4p8ghbw3mh9wpqksya9vwhzdx6dnlf354zjsal1"))))
1711 (build-system gnu-build-system)
1715 "--disable-opt" ;"-march=native". XXX this also turns off -O0.
1716 (string-append "LDFLAGS=-Wl,-rpath="
1717 (assoc-ref %outputs "out") "/lib"))))
1718 (inputs `(("zlib" ,zlib)))
1719 (home-page "http://fallabs.com/kyotocabinet/")
1721 "Kyoto Cabinet is a modern implementation of the DBM database")
1723 "Kyoto Cabinet is a standalone file-based database that supports Hash
1724 and B+ Tree data storage models. It is a fast key-value lightweight
1725 database and supports many programming languages. It is a NoSQL database.")
1726 (license license:gpl3+)))
1728 (define-public tokyocabinet
1730 (name "tokyocabinet")
1735 (uri (string-append "http://fallabs.com/tokyocabinet/"
1736 name "-" version ".tar.gz"))
1739 "140zvr0n8kvsl0fbn2qn3f2kh3yynfwnizn4dgbj47m975yg80x0"))))
1740 (build-system gnu-build-system)
1743 (list "--enable-pthread" "--enable-off64" "--enable-fastest"
1744 (string-append "LDFLAGS=-Wl,-rpath="
1745 (assoc-ref %outputs "out") "/lib"))))
1748 (home-page "http://fallabs.com/tokyocabinet/")
1749 (synopsis "Tokyo Cabinet is a modern implementation of the DBM database")
1751 "Tokyo Cabinet is a library of routines for managing a database.
1752 The database is a simple data file containing records, each is a pair of a
1753 key and a value. Every key and value is serial bytes with variable length.
1754 Both binary data and character string can be used as a key and a value.
1755 There is neither concept of data tables nor data types. Records are
1756 organized in hash table, B+ tree, or fixed-length array.")
1757 (license license:lgpl2.1+)))
1759 (define-public wiredtiger
1766 "http://source.wiredtiger.com/releases/wiredtiger-"
1767 version ".tar.bz2"))
1770 "0krwnb2zfbhvjaskwl875qzd3y626s84zcciq2mxr5c5riw3yh6s"))))
1771 (build-system gnu-build-system)
1773 '(#:configure-flags '("--enable-lz4" "--with-builtins=snappy,zlib")
1775 (modify-phases %standard-phases
1776 (add-before 'check 'disable-test/fops
1778 ;; XXX: timed out after 3600 seconds of silence
1779 (substitute* "Makefile"
1785 ("snappy" ,snappy)))
1786 (home-page "http://source.wiredtiger.com/")
1787 (synopsis "NoSQL data engine")
1789 "WiredTiger is an extensible platform for data management. It supports
1790 row-oriented storage (where all columns of a row are stored together),
1791 column-oriented storage (where columns are stored in groups, allowing for
1792 more efficient access and storage of column subsets) and log-structured merge
1793 trees (LSM), for sustained throughput under random insert workloads.")
1794 (license license:gpl3) ; or GPL-2
1795 ;; configure.ac: WiredTiger requires a 64-bit build.
1796 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))))
1798 (define-public wiredtiger-3
1800 (inherit wiredtiger)
1805 (uri (string-append "http://source.wiredtiger.com/releases/wiredtiger-"
1806 version ".tar.bz2"))
1809 "014awypv579ascg4jbx4pndj2wld337m79yyzrzyr7hxrff139jx"))))))
1811 (define-public guile-wiredtiger
1813 (name "guile-wiredtiger")
1818 (url "https://framagit.org/a-guile-mind/guile-wiredtiger.git")
1819 (commit "340ad4bc2ff4dcc6216a2f5c6f9172ca320ac66b")))
1820 (file-name (string-append name "-" version "-checkout"))
1823 "15j36bvxxzil7qpwlmh1rffqpva3ynvrcpqhhqbj2c9208ayz595"))))
1824 (build-system gnu-build-system)
1826 '(#:parallel-tests? #f ;; tests can't be run in parallel, yet.
1828 (list (string-append "--with-libwiredtiger-prefix="
1829 (assoc-ref %build-inputs "wiredtiger")))
1830 #:make-flags '("GUILE_AUTO_COMPILE=0")))
1832 `(("autoconf" ,autoconf)
1833 ("automake" ,automake)
1834 ("pkg-config" ,pkg-config)))
1836 `(("wiredtiger" ,wiredtiger-3)
1837 ("guile" ,guile-2.2)))
1839 `(("guile-bytestructures" ,guile-bytestructures)))
1840 (synopsis "WiredTiger bindings for GNU Guile")
1842 "This package provides Guile bindings to the WiredTiger ``NoSQL''
1844 (home-page "https://framagit.org/a-guile-mind/guile-wiredtiger")
1845 (license license:gpl3+)))
1847 (define-public perl-db-file
1849 (name "perl-db-file")
1855 "mirror://cpan/authors/id/P/PM/PMQS/DB_File-"
1860 "0w2d99vs9qarng2f9fpg3gchfdzy6an13507jhclcl8wv183h5hg"))))
1861 (build-system perl-build-system)
1862 (inputs `(("bdb" ,bdb)))
1863 (native-inputs `(("perl-test-pod" ,perl-test-pod)))
1865 `(#:phases (modify-phases %standard-phases
1867 'configure 'modify-config.in
1868 (lambda* (#:key inputs #:allow-other-keys)
1869 (substitute* "config.in"
1870 (("/usr/local/BerkeleyDB") (assoc-ref inputs "bdb")))
1872 (home-page "https://metacpan.org/release/DB_File")
1874 "Perl5 access to Berkeley DB version 1.x")
1876 "The DB::File module provides Perl bindings to the Berkeley DB version 1.x.")
1877 (license license:perl-license)))
1885 (uri (string-append "https://github.com/LMDB/lmdb/archive/"
1886 "LMDB_" version ".tar.gz"))
1889 "0a7a8535csrvw71mrgx680m5d17bnxmmhcccij30idifi1cpi4pk"))))
1890 (build-system gnu-build-system)
1892 `(#:test-target "test"
1894 (modify-phases %standard-phases
1896 (lambda* (#:key outputs #:allow-other-keys)
1897 (chdir (string-append
1898 (getenv "PWD") "/lmdb-LMDB_" ,version "/libraries/liblmdb"))
1899 (substitute* "Makefile"
1900 (("/usr/local") (assoc-ref outputs "out")))
1902 (home-page "https://symas.com/products/lightning-memory-mapped-database")
1903 (synopsis "Lightning Memory-Mapped Database library")
1905 "The @dfn{Lightning Memory-Mapped Database} (LMDB) is a high-performance
1906 transactional database. Unlike more complex relational databases, LMDB handles
1907 only key-value pairs (stored as arbitrary byte arrays) and relies on the
1908 underlying operating system for caching and locking, keeping the code small and
1910 The use of ‘zero-copy’ memory-mapped files combines the persistence of classic
1911 disk-based databases with high read performance that scales linearly over
1912 multiple cores. The size of each database is limited only by the size of the
1913 virtual address space — not physical RAM.")
1914 (license license:openldap2.8)))
1916 (define-public libpqxx
1923 "http://pqxx.org/download/software/libpqxx/"
1924 name "-" version ".tar.gz"))
1927 "0f6wxspp6rx12fkasanb0z2g2gc8dhcfwnxagx8wwqbpg6ifsz09"))))
1928 (build-system gnu-build-system)
1930 `(("python" ,python-2)))
1931 (inputs `(("postgresql" ,postgresql)))
1933 `(#:tests? #f ; # FAIL: 1
1935 (modify-phases %standard-phases
1936 (add-before 'configure 'fix-sed-command
1938 ;; Newer sed versions error out if double brackets are not used.
1939 (substitute* "configure"
1940 (("\\[:space:\\]") "[[:space:]]"))
1942 (synopsis "C++ connector for PostgreSQL")
1944 "Libpqxx is a C++ library to enable user programs to communicate with the
1945 PostgreSQL database back-end. The database back-end can be local or it may be
1946 on another machine, accessed via TCP/IP.")
1947 (home-page "http://pqxx.org/")
1948 (license license:bsd-3)))
1950 (define-public python-peewee
1952 (name "python-peewee")
1957 (uri (pypi-uri "peewee" version))
1960 "10f2mrd5hw6rjklrzaix2lsxlgc8vx3xak54arcy6yd791zhchi3"))))
1961 (build-system python-build-system)
1963 `(#:tests? #f)) ; Fails to import test data
1965 `(("python-cython" ,python-cython)))
1966 (home-page "https://github.com/coleifer/peewee/")
1967 (synopsis "Small object-relational mapping utility")
1969 "Peewee is a simple and small ORM (object-relation mapping) tool. Peewee
1970 handles converting between pythonic values and those used by databases, so you
1971 can use Python types in your code without having to worry. It has built-in
1972 support for sqlite, mysql and postgresql. If you already have a database, you
1973 can autogenerate peewee models using @code{pwiz}, a model generator.")
1974 (license license:expat)))
1976 (define-public python2-peewee
1977 (package-with-python2 python-peewee))
1979 (define-public sqlcipher
1986 (uri (string-append "https://github.com/sqlcipher/" name
1987 "/archive/v" version ".tar.gz"))
1989 (base32 "1gv58dlbpzrmznly52yqbxgvii0ib88zr3aszla1bsypwjr6flff"))
1990 (file-name (string-append name "-" version ".tar.gz"))))
1991 (build-system gnu-build-system)
1993 `(("libcrypto" ,openssl)
1994 ("libtcl8.6" ,tcl))) ; required for running the tests
1999 '("--enable-tempstore=yes"
2000 "CFLAGS=-DSQLITE_HAS_CODEC -DSQLITE_ENABLE_FTS3"
2001 "LDFLAGS=-lcrypto -ltcl8.6"
2003 ;; tests cannot be run from the Makefile
2004 ;; see: <https://github.com/sqlcipher/sqlcipher/issues/172>
2005 #:test-target "testfixture"
2007 (modify-phases %standard-phases
2008 (add-before 'check 'build-test-runner
2009 (assoc-ref %standard-phases 'check))
2013 (system* "./testfixture" "test/crypto.test")))))))
2014 (home-page "https://www.zetetic.net/sqlcipher/")
2016 "Library providing transparent encryption of SQLite database files")
2017 (description "SQLCipher is an implementation of SQLite, extended to
2018 provide transparent 256-bit AES encryption of database files. Pages are
2019 encrypted before being written to disk and are decrypted when read back. It’s
2020 well suited for protecting embedded application databases and for mobile
2023 ;; src/{crypto.c,crypto_impl.c,crypto.h,crypto_cc.c,crypto_libtomcrypt.c},
2024 ;; src/{crypto_openssl.c,sqlcipher.h}, tool/crypto-speedtest.tcl,
2025 ;; test/crypto.test are licensed under a 3-clause BSD license. All other
2026 ;; source files are in the public domain.
2027 (license (list license:public-domain license:bsd-3))))
2029 (define-public python-pyodbc-c
2031 (name "python-pyodbc-c")
2036 (uri (string-append "https://gitlab.com/daym/pyodbc-c/repository/"
2037 "archive.tar.gz?ref=v" version))
2040 "05aq2297k779xidmxcwkrrxjvj1bh2q7d9a1rcjv6zr15y764ga9"))
2041 (file-name (string-append name "-" version ".tar.gz"))))
2042 (build-system python-build-system)
2044 `(("unixodbc" ,unixodbc)))
2046 `(;; No unit tests exist.
2048 (home-page "https://github.com/mkleehammer/pyodbc")
2049 (synopsis "Python ODBC Library")
2050 (description "@code{python-pyodbc-c} provides a Python DB-API driver
2052 (license (license:x11-style "file://LICENSE.TXT"))))
2054 (define-public python2-pyodbc-c
2055 (package-with-python2 python-pyodbc-c))
2057 (define-public python-pyodbc
2059 (name "python-pyodbc")
2064 (uri (pypi-uri "pyodbc" version))
2067 "1m311vi7vpay1j7rkq71fpsk0gb7454k4lldk5b63hyy6yvsn9j3"))
2068 (file-name (string-append name "-" version ".tar.gz"))))
2069 (build-system python-build-system)
2071 `(("unixodbc" ,unixodbc)))
2073 `(;; No unit tests exist.
2075 (home-page "https://github.com/mkleehammer/pyodbc")
2076 (synopsis "Python ODBC Library")
2077 (description "@code{python-pyodbc} provides a Python DB-API driver
2079 (license (license:x11-style "file:///LICENSE.TXT"))))
2081 (define-public python2-pyodbc
2082 (package-with-python2 python-pyodbc))
2084 (define-public mdbtools
2091 (uri (string-append "https://github.com/brianb/mdbtools/archive/"
2095 "05hbmxcq173kzb899gdi3bz2qcc1vi3n1qbbkwpsvrq7ggf11wyw"))
2096 (file-name (string-append name "-" version ".tar.gz"))))
2097 (build-system gnu-build-system)
2101 `(("autoconf" ,autoconf)
2102 ("automake" ,automake)
2103 ("libtool" ,libtool)
2104 ("pkg-config" ,pkg-config)
2105 ("txt2man" ,txt2man)
2109 (modify-phases %standard-phases
2110 (add-after 'unpack 'autoreconf
2112 (zero? (system* "autoreconf" "-vfi")))))))
2113 (home-page "http://mdbtools.sourceforge.net/")
2114 (synopsis "Read Microsoft Access databases")
2115 (description "MDB Tools is a set of tools and applications to read the
2116 proprietary MDB file format used in Microsoft's Access database package. This
2117 includes programs to export schema and data from Microsoft's Access database
2118 file format to other databases such as MySQL, Oracle, Sybase, PostgreSQL,
2119 etc., and an SQL engine for performing simple SQL queries.")
2120 (license (list license:lgpl2.0
2123 (define-public python-lmdb
2125 (name "python-lmdb")
2129 (uri (pypi-uri "lmdb" version))
2132 "1zh38gvkqw1jm5105if6rr7ccbgyxr7k2rm5ygb9ab3bq82pyaww"))
2133 (modules '((guix build utils)))
2135 ;; Delete bundled lmdb source files.
2137 (for-each delete-file (list "lib/lmdb.h"
2142 (build-system python-build-system)
2147 (modify-phases %standard-phases
2148 (add-before 'build 'use-system-lmdb
2149 (lambda* (#:key inputs #:allow-other-keys)
2150 (let ((lmdb (assoc-ref inputs "lmdb")))
2151 (setenv "LMDB_FORCE_SYSTEM" "set")
2152 (setenv "LMDB_INCLUDEDIR" (string-append lmdb "/include"))
2153 (setenv "LMDB_LIBDIR" (string-append lmdb "/lib"))
2155 ;; Tests fail with: ‘lmdb.tool: Please specify environment (--env)’.
2157 (home-page "https://github.com/dw/py-lmdb")
2158 (synopsis "Python binding for the ‘Lightning’ database (LMDB)")
2160 "python-lmdb or py-lmdb is a Python binding for the @dfn{Lightning
2161 Memory-Mapped Database} (LMDB), a high-performance key-value store.")
2163 (list license:openldap2.8
2164 ;; ‘lib/win32/inttypes.h’ and ‘lib/win32-stdint/stdint.h’ are BSD-3,
2165 ;; but not actually needed on platforms currently supported by Guix.
2168 (define-public python2-lmdb
2169 (package-with-python2 python-lmdb))
2171 (define-public python-orator
2173 (name "python-orator")
2177 (uri (pypi-uri "orator" version))
2180 "14r58z64fdp76ixnvmi4lni762b405ynmsx6chr1qihs3yl9zn6c"))))
2181 (build-system python-build-system)
2184 (modify-phases %standard-phases
2185 (add-after 'unpack 'loosen-dependencies
2186 ;; Tests are not actually run since they are not included with the
2187 ;; distributed package, but dependencies are checked.
2189 (substitute* "setup.py"
2191 (("flexmock==0.9.7") "flexmock")
2192 ;; The pytest-mock package is out of date, so we remove minimum
2193 ;; version requirement.
2194 (("pytest-mock.*'") "pytest-mock'"))
2197 `(("python-pytest-mock" ,python-pytest-mock)
2198 ("python-pytest" ,python-pytest)
2199 ("python-flexmock" ,python-flexmock)))
2201 `(("python-backpack" ,python-backpack)
2202 ("python-blinker" ,python-blinker)
2203 ("python-cleo" ,python-cleo)
2204 ("python-faker" ,python-faker)
2205 ("python-inflection" ,python-inflection)
2206 ("python-lazy-object-proxy" ,python-lazy-object-proxy)
2207 ("python-pendulum" ,python-pendulum)
2208 ("python-pyaml" ,python-pyaml)
2209 ("python-pygments" ,python-pygments)
2210 ("python-simplejson" ,python-simplejson)
2211 ("python-six" ,python-six)
2212 ("python-wrapt" ,python-wrapt)))
2213 (home-page "https://orator-orm.com/")
2214 (synopsis "ActiveRecord ORM for Python")
2216 "Orator provides a simple ActiveRecord-like Object Relational Mapping
2217 implementation for Python.")
2218 (license license:expat)
2219 (properties `((python2-variant . ,(delay python2-orator))))))
2221 (define-public python2-orator
2222 (package-with-python2 (strip-python2-variant python-orator)))
2224 (define-public virtuoso-ose
2226 (name "virtuoso-ose")
2232 "https://github.com/openlink/virtuoso-opensource/releases/"
2233 "download/v" version "/virtuoso-opensource-" version ".tar.gz"))
2235 (base32 "0r1xakclkfi69pzh8z2k16z3x0m49pxp764icj0ad4w4bb97fr42"))))
2236 (build-system gnu-build-system)
2238 `(#:tests? #f ; Tests require a network connection.
2239 ;; TODO: Removing the libsrc/zlib source directory breaks the build.
2240 ;; This indicates that the internal zlib code may still be used.
2241 #:configure-flags '("--without-internal-zlib"
2242 "--with-readline")))
2244 `(("openssl" ,openssl)
2245 ("net-tools" ,net-tools)
2246 ("readline" ,readline)
2248 (home-page "http://vos.openlinksw.com/owiki/wiki/VOS/")
2249 (synopsis "Multi-model database system")
2250 (description "Virtuoso is a scalable cross-platform server that combines
2251 relational, graph, and document data management with web application server
2252 and web services platform functionality.")
2253 ;; configure: error: ... can only be build on 64bit platforms
2254 (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))
2255 (license license:gpl2)))
2257 (define-public r-rmysql
2264 (uri (cran-uri "RMySQL" version))
2267 "0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n"))))
2268 (properties `((upstream-name . "RMySQL")))
2269 (build-system r-build-system)
2271 `(("pkg-config" ,pkg-config)))
2273 `(("mariadb" ,mariadb)
2276 `(("r-dbi" ,r-dbi)))
2277 (home-page "https://github.com/r-dbi/RMySQL")
2278 (synopsis "Database interface and MySQL driver for R")
2280 "This package provides a DBI interface to MySQL / MariaDB. The RMySQL
2281 package contains an old implementation based on legacy code from S-PLUS which
2282 is being phased out. A modern MySQL client based on Rcpp is available from
2283 the RMariaDB package.")
2284 (license license:gpl2)))
2286 (define-public python-ccm
2293 (uri (pypi-uri "ccm" version))
2296 "177dfxsmk3k4cih6fh6v8d91bh4nqx7ns6pc07w7m7i3cvdx3c8n"))))
2297 (build-system python-build-system)
2299 `(("python-pyyaml" ,python-pyyaml)
2300 ;; Not listed in setup.py, but used in ccmlib/node.py for full
2302 ("python-psutil" ,python-psutil)
2303 ("python-six" ,python-six)))
2304 (home-page "https://github.com/pcmanus/ccm")
2305 (synopsis "Cassandra Cluster Manager for Apache Cassandra clusters on
2307 (description "Cassandra Cluster Manager is a development tool for testing
2308 local Cassandra clusters. It creates, launches and removes Cassandra clusters
2310 (license license:asl2.0)))
2312 (define-public python2-ccm
2313 (package-with-python2 python-ccm))
2315 (define-public python2-pysqlite
2317 (name "python2-pysqlite")
2322 (uri (pypi-uri "pysqlite" version))
2325 "1424gwq9sil2ffmnizk60q36vydkv8rxs6m7xs987kz8cdc37lqp"))))
2326 (build-system python-build-system)
2328 `(("sqlite" ,sqlite)))
2330 `(#:python ,python-2 ; incompatible with Python 3
2331 #:tests? #f)) ; no test target
2332 (home-page "https://github.com/ghaering/pysqlite")
2333 (synopsis "SQLite bindings for Python")
2335 "Pysqlite provides SQLite bindings for Python that comply to the
2336 Database API 2.0T.")
2337 (license license:zlib)))
2339 (define-public python-sqlalchemy
2341 (name "python-sqlalchemy")
2346 (uri (string-append "https://pypi.python.org/packages/source/S/"
2347 "SQLAlchemy/SQLAlchemy-" version ".tar.gz"))
2350 "094mmbs4igrxplfyqd59j90jb83ixpbbzqc0w49yw81m82nnjrgg"))))
2351 (build-system python-build-system)
2353 `(("python-cython" ,python-cython) ;for c extensions
2354 ("python-pytest" ,python-pytest)
2355 ("python-mock" ,python-mock))) ;for tests
2358 (modify-phases %standard-phases
2360 (lambda _ (invoke "py.test"))))))
2361 (home-page "http://www.sqlalchemy.org")
2362 (synopsis "Database abstraction library")
2364 "SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that
2365 gives application developers the full power and flexibility of SQL. It
2366 provides a full suite of well known enterprise-level persistence patterns,
2367 designed for efficient and high-performing database access, adapted into a
2368 simple and Pythonic domain language.")
2369 (license license:x11)))
2371 (define-public python2-sqlalchemy
2372 (package-with-python2 python-sqlalchemy))
2374 (define-public python-sqlalchemy-utils
2376 (name "python-sqlalchemy-utils")
2381 (uri (pypi-uri "SQLAlchemy-Utils" version))
2384 "1myn71dn8j74xglyh46f12sh8ywb7j0j732rzwq70kvwwnq32m73"))))
2385 (build-system python-build-system)
2387 '(#:tests? #f)) ; FIXME: Many tests require a running database server.
2389 ;; (modify-phases %standard-phases
2392 ;; (zero? (system* "py.test" "sqlalchemy_utils" "tests")))))
2394 `(("python-six" ,python-six)
2395 ("python-sqlalchemy" ,python-sqlalchemy)))
2397 `(("python-dateutil" ,python-dateutil)
2398 ("python-flexmock" ,python-flexmock)
2399 ("python-psycopg2" ,python-psycopg2)
2400 ("python-pytest" ,python-pytest)
2401 ("python-pytz" ,python-pytz)))
2402 (home-page "https://github.com/kvesteri/sqlalchemy-utils")
2403 (synopsis "Various utility functions for SQLAlchemy")
2405 "SQLAlchemy-utils provides various utility functions and custom data types
2406 for SQLAlchemy. SQLAlchemy is an SQL database abstraction library for Python.
2408 You might also want to install the following optional dependencies:
2410 @item @code{python-passlib}
2411 @item @code{python-babel}
2412 @item @code{python-cryptography}
2413 @item @code{python-pytz}
2414 @item @code{python-psycopg2}
2415 @item @code{python-furl}
2416 @item @code{python-flask-babel}
2419 (license license:bsd-3)))
2421 (define-public python2-sqlalchemy-utils
2422 (package-with-python2 python-sqlalchemy-utils))
2424 (define-public python-alembic
2426 (name "python-alembic")
2431 (uri (pypi-uri "alembic" version))
2434 "0cm73vabrqj92v7a0wwvldj8j7bc7dwv358kvkk7p87gx7mm2a04"))))
2435 (build-system python-build-system)
2437 `(("python-mock" ,python-mock)
2438 ("python-pytest-cov" ,python-pytest-cov)))
2440 `(("python-dateutil" ,python-dateutil)
2441 ("python-sqlalchemy" ,python-sqlalchemy)
2442 ("python-mako" ,python-mako)
2443 ("python-editor" ,python-editor)))
2444 (home-page "https://bitbucket.org/zzzeek/alembic")
2446 "Database migration tool for SQLAlchemy")
2448 "Alembic is a lightweight database migration tool for usage with the
2449 SQLAlchemy Database Toolkit for Python.")
2450 (license license:expat)))
2452 (define-public python2-alembic
2453 (package-with-python2 python-alembic))
2455 (define-public python-pickleshare
2457 (name "python-pickleshare")
2462 (uri (pypi-uri "pickleshare" version))
2464 (base32 "1jmghg3c53yp1i8cm6pcrm280ayi8621rwyav9fac7awjr3kss47"))))
2465 (build-system python-build-system)
2467 `(#:phases (modify-phases %standard-phases
2470 (invoke "pytest"))))))
2472 `(("python-pytest" ,python-pytest)))
2473 (home-page "https://github.com/vivainio/pickleshare")
2474 (synopsis "Tiny key value database with concurrency support")
2476 "PickleShare is a small ‘shelve’-like datastore with concurrency support.
2477 Like shelve, a PickleShareDB object acts like a normal dictionary. Unlike
2478 shelve, many processes can access the database simultaneously. Changing a
2479 value in database is immediately visible to other processes accessing the same
2480 database. Concurrency is possible because the values are stored in separate
2481 files. Hence the “database” is a directory where all files are governed by
2483 (properties `((python2-variant . ,(delay python2-pickleshare))))
2484 (license license:expat)))
2486 (define-public python2-pickleshare
2487 (let ((pickleshare (package-with-python2
2488 (strip-python2-variant python-pickleshare))))
2489 (package (inherit pickleshare)
2490 (propagated-inputs `(("python2-pathlib2" ,python2-pathlib2)
2491 ,@(package-propagated-inputs pickleshare))))))
2493 (define-public python-apsw
2495 (name "python-apsw")
2496 (version "3.20.1-r1")
2500 (uri (string-append "https://github.com/rogerbinns/apsw/archive/"
2502 (file-name (string-append "apsw-" version ".tar.gz"))
2505 "00ai7m2pqi26qaflhz314d8k5i3syw7xzr145fhfl0crhyh6adz2"))))
2506 (build-system python-build-system)
2508 `(("sqlite" ,sqlite)))
2511 (modify-phases %standard-phases
2514 (invoke "python" "setup.py" "build" "--enable-all-extensions")
2516 (add-after 'build 'build-test-helper
2518 (invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
2519 "-I." "-Isqlite3" "src/testextension.c")
2522 (add-after 'install 'check
2523 (lambda* (#:key inputs outputs #:allow-other-keys)
2524 (add-installed-pythonpath inputs outputs)
2525 (invoke "python" "setup.py" "test")
2527 (home-page "https://github.com/rogerbinns/apsw/")
2528 (synopsis "Another Python SQLite Wrapper")
2529 (description "APSW is a Python wrapper for the SQLite
2530 embedded relational database engine. In contrast to other wrappers such as
2531 pysqlite it focuses on being a minimal layer over SQLite attempting just to
2532 translate the complete SQLite API into Python.")
2533 (license license:zlib)))
2535 (define-public python2-apsw
2536 (package-with-python2 python-apsw))
2538 (define-public python2-neo4j-driver
2540 (name "python2-neo4j-driver")
2541 ;; NOTE: When upgrading to 1.5.0, please add a python3 variant.
2545 (uri (pypi-uri "neo4j-driver" version))
2548 "011r1vh182p8mm83d8dz9rfnc3l7rf7fd00cyrbyfzi71jmc4g98"))))
2549 (build-system python-build-system)
2551 `(#:python ,python-2))
2552 (home-page "https://neo4j.com/developer/python/")
2553 (synopsis "Neo4j driver code written in Python")
2554 (description "This package provides the Neo4j Python driver that connects
2555 to the database using Neo4j's binary protocol. It aims to be minimal, while
2556 being idiomatic to Python.")
2557 (license license:asl2.0)))
2559 (define-public python2-py2neo
2561 (name "python2-py2neo")
2565 (uri (pypi-uri "py2neo" version))
2568 "1f1q95vqcvlc3nsc33p841swnjdcjazddlq2dzi3qfnjqjrajxw1"))))
2569 (build-system python-build-system)
2571 `(#:python ,python-2))
2572 (home-page "http://py2neo.org")
2573 (synopsis "Library and toolkit for working with Neo4j in Python")
2574 (description "This package provides a client library and toolkit for
2575 working with Neo4j from within Python applications and from the command
2576 line. The core library has no external dependencies and has been carefully
2577 designed to be easy and intuitive to use.")
2578 (license license:asl2.0)))
2580 (define-public python-psycopg2
2582 (name "python-psycopg2")
2587 (uri (pypi-uri "psycopg2" version))
2590 "17klx964gw8z0znl0raz3by8vdc7cq5gxj4pdcrfcina84nrdkzc"))))
2591 (build-system python-build-system)
2593 ;; Tests would require a postgresql database "psycopg2_test"
2594 ;; and a running postgresql database management service.
2595 `(#:tests? #f)) ; TODO re-enable after providing a test-db.
2597 `(("postgresql" ,postgresql))) ; libpq
2598 (home-page "http://initd.org/psycopg/")
2599 (synopsis "Python PostgreSQL adapter")
2601 "psycopg2 is a thread-safe PostgreSQL adapter that implements DB-API
2603 (license license:lgpl3+)))
2605 (define-public python2-psycopg2
2606 (package-with-python2 python-psycopg2))
2608 (define-public python-sadisplay
2610 (name "python-sadisplay")
2615 (uri (pypi-uri "sadisplay" version))
2618 "01d9lxhmgpb68gy8rd6zj6fcwp84n2qq210n1qsk3qbsir79bzh4"))))
2619 (build-system python-build-system)
2621 `(("python-sqlalchemy" ,python-sqlalchemy)))
2624 `(("python-nose" ,python-nose)))
2625 (home-page "https://bitbucket.org/estin/sadisplay")
2626 (synopsis "SQLAlchemy schema displayer")
2627 (description "This package provides a program to build Entity
2628 Relationship diagrams from a SQLAlchemy model (or directly from the
2630 (license license:bsd-3)))
2632 (define-public python2-sadisplay
2633 (package-with-python2 python-sadisplay))
2635 (define-public python-mysqlclient
2637 (name "python-mysqlclient")
2642 (uri (pypi-uri "mysqlclient" version))
2645 "0kv4a1icwdav8jpl7qvnr931lw5h3v22ids6lwq6qpi1hjzf33pz"))))
2646 (build-system python-build-system)
2648 `(("mariadb" ,mariadb)
2649 ("nose" ,python-nose)
2650 ("mock" ,python-mock)
2651 ("py.test" ,python-pytest)))
2655 ("openssl" ,openssl)))
2656 (home-page "https://github.com/PyMySQL/mysqlclient-python")
2657 (synopsis "MySQLdb is an interface to the popular MySQL database server for Python")
2658 (description "MySQLdb is an interface to the popular MySQL database server
2659 for Python. The design goals are:
2661 @item Compliance with Python database API version 2.0 [PEP-0249],
2662 @item Thread-safety,
2663 @item Thread-friendliness (threads will not block each other).
2665 (license license:gpl2)))
2667 (define-public python2-mysqlclient
2668 (package-with-python2 python-mysqlclient))
2670 (define-public python-hiredis
2672 (name "python-hiredis")
2677 (uri (pypi-uri "hiredis" version))
2680 "1dfm2k9l9zar9nw9fwmm74zrgraxdxs04vx9li56fjcf289qx5fa"))))
2681 (build-system python-build-system)
2685 (home-page "https://github.com/redis/hiredis-py")
2686 (synopsis "Python extension that wraps protocol parsing code in hiredis")
2687 (description "Python-hiredis is a python extension that wraps protocol
2688 parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.")
2689 (license license:bsd-3)))
2691 (define-public python2-hiredis
2692 (package-with-python2 python-hiredis))
2694 (define-public python-fakeredis
2696 (name "python-fakeredis")
2701 (uri (pypi-uri "fakeredis" version))
2704 "0zncahj3byyasyfx9i7k991ph0n0lq8v3a21pqri5qxn9564bk9r"))))
2705 (build-system python-build-system)
2709 (home-page "https://github.com/jamesls/fakeredis")
2710 (synopsis "Fake implementation of redis API for testing purposes")
2712 "Fakeredis is a pure-Python implementation of the redis-py Python client
2713 that simulates talking to a redis server. It was created for a single purpose:
2714 to write unit tests.
2716 Setting up redis is not hard, but one often wants to write unit tests that don't
2717 talk to an external server such as redis. This module can be used as a
2718 reasonable substitute.")
2719 (license license:bsd-3)))
2721 (define-public python2-fakeredis
2722 (package-with-python2 python-fakeredis))
2724 (define-public python-redis
2726 (name "python-redis")
2731 (uri (pypi-uri "redis" version))
2733 (base32 "03vcgklykny0g0wpvqmy8p6azi2s078317wgb2xjv5m2rs9sjb52"))))
2734 (build-system python-build-system)
2735 ;; Tests require a running Redis server
2736 (arguments '(#:tests? #f))
2737 ;; As long as we are not running test, we do not need this input :-)
2739 ;; `(("python-pytest" ,python-pytest)))
2740 (home-page "https://github.com/andymccurdy/redis-py")
2741 (synopsis "Redis Python client")
2743 "This package provides a Python interface to the Redis key-value store.")
2744 (license license:expat)))
2746 (define-public python2-redis
2747 (package-with-python2 python-redis))
2749 (define-public python-rq
2756 (uri (pypi-uri "rq" version))
2758 (base32 "0gaq5pnh0zy46r8jvygi0ifbvz3pq6i7xla78ijcgjw0x77qzsdh"))))
2759 (build-system python-build-system)
2761 `(("python-click" ,python-click)
2762 ("python-redis" ,python-redis)))
2763 (home-page "http://python-rq.org/")
2764 (synopsis "Simple job queues for Python")
2766 "RQ (Redis Queue) is a simple Python library for queueing jobs and
2767 processing them in the background with workers. It is backed by Redis and it
2768 is designed to have a low barrier to entry.")
2769 (license license:bsd-2)))
2771 (define-public python2-rq
2772 (package-with-python2 python-rq))
2774 (define-public python-trollius-redis
2776 (name "python-trollius-redis")
2781 (uri (pypi-uri "trollius_redis" version))
2784 "0k3vypszmgmaipgw9xscvgm79h2zd6p6ci8gdp5sxl6g5kbqr9fy"))))
2785 (build-system python-build-system)
2786 ;; TODO: Tests require packaging 'hiredis'.
2787 (arguments '(#:tests? #f))
2788 (home-page "https://github.com/benjolitz/trollius-redis")
2789 (synopsis "Port of asyncio-redis to trollius")
2790 (description "@code{trollius-redis} is a Redis client for Python
2791 trollius. It is an asynchronious IO (PEP 3156) implementation of the
2793 (license license:bsd-2)))
2795 (define-public python2-trollius-redis
2796 (package-with-python2 python-trollius-redis))
2798 (define-public python-sqlparse
2800 (name "python-sqlparse")
2804 (uri (pypi-uri "sqlparse" version))
2807 "1v3xh0bkfhb262dbndgzhivpnhdwavdzz8jjhx9vx0xbrx2880nf"))))
2808 (build-system python-build-system)
2811 (modify-phases %standard-phases
2813 (lambda _ (zero? (system* "py.test")))))))
2815 `(("python-pytest" ,python-pytest)))
2816 (home-page "https://github.com/andialbrecht/sqlparse")
2817 (synopsis "Non-validating SQL parser")
2818 (description "Sqlparse is a non-validating SQL parser for Python. It
2819 provides support for parsing, splitting and formatting SQL statements.")
2820 (license license:bsd-3)))
2822 (define-public python2-sqlparse
2823 (package-with-python2 python-sqlparse))
2825 (define-public python-sql
2832 (uri (pypi-uri "python-sql" version))
2835 "0p6kaqj02vz0habmdx37zjk6hjxdfm8aw737zs059vvpr70ird87"))))
2836 (build-system python-build-system)
2837 (home-page "https://python-sql.tryton.org/")
2838 (synopsis "Library to write SQL queries in a pythonic way")
2839 (description "@code{python-sql} is a library to write SQL queries, that
2840 transforms idiomatic python function calls to well-formed SQL queries.")
2841 (license license:bsd-3)))
2843 (define-public python2-sql
2844 (package-with-python2 python-sql))
2846 (define-public mongo-tools
2848 (name "mongo-tools")
2851 (origin (method git-fetch)
2853 (url "https://github.com/mongodb/mongo-tools")
2854 (commit (string-append "r" version))))
2855 (file-name (git-file-name name version))
2858 "1bcsz5cvj39a7nsxsfqmz9igrw33j6yli9kffigqyscs52amw7x1"))))
2859 (build-system go-build-system)
2861 `(#:import-path "github.com/mongodb/mongo-tools"
2862 #:modules ((srfi srfi-1)
2863 (guix build go-build-system)
2867 '("bsondump" "mongodump" "mongoexport" "mongofiles"
2868 "mongoimport" "mongooplog" "mongorestore"
2869 "mongostat" "mongotop")))
2870 (modify-phases %standard-phases
2871 (add-after 'unpack 'delete-bundled-source-code
2873 (delete-file-recursively
2874 "src/github.com/mongodb/mongo-tools/vendor")
2876 ;; We don't need to install the source code for end-user applications
2877 (delete 'install-source)
2880 (every (lambda (tool)
2883 ;; This is where the tests expect to find the
2885 "-o" ,(string-append
2886 "src/github.com/mongodb/mongo-tools/bin/"
2889 "-tags=\"ssl sasl\""
2891 "-extldflags=-Wl,-z,now,-z,relro"
2893 "src/github.com/mongodb/mongo-tools/"
2894 tool "/main/" tool ".go"))))
2895 (simple-format #t "build: running ~A\n"
2896 (string-join command))
2897 (apply invoke command)))
2901 (with-directory-excursion "src"
2902 (every (lambda (tool)
2905 (string-append "github.com/mongodb/mongo-tools/" tool)))
2908 (lambda* (#:key outputs #:allow-other-keys)
2909 (for-each (lambda (tool)
2911 (string-append "src/github.com/mongodb/mongo-tools/bin/" tool)
2912 (string-append (assoc-ref outputs "out")
2916 `(("go-github.com-howeyc-gopass" ,go-github.com-howeyc-gopass)
2917 ("go-github.com-jessevdk-go-flags" ,go-github.com-jessevdk-go-flags)
2918 ("go-golang.org-x-crypto-ssh-terminal" ,go-golang.org-x-crypto-ssh-terminal)
2919 ("go-gopkg.in-mgo.v2" ,go-gopkg.in-mgo.v2)
2920 ("go-gopkg.in-tomb.v2" ,go-gopkg.in-tomb.v2)
2921 ("go-github.com-nsf-termbox-go" ,go-github.com-nsf-termbox-go)
2922 ("go-github.com-smartystreets-goconvey" ,go-github.com-smartystreets-goconvey)))
2923 (home-page "https://github.com/mongodb/mongo-tools")
2924 (synopsis "Various tools for interacting with MongoDB and BSON")
2926 "This package includes a collection of tools related to MongoDB.
2929 Display BSON files in a human-readable format
2931 Convert data from JSON, TSV or CSV and insert them into a collection
2933 Write an existing collection to CSV or JSON format
2934 @item mongodump/mongorestore
2935 Dump MongoDB backups to disk in the BSON format
2937 Read MongoDB backups in the BSON format, and restore them to a live database
2939 Monitor live MongoDB servers, replica sets, or sharded clusters
2941 Read, write, delete, or update files in GridFS
2943 Replay oplog entries between MongoDB servers
2945 Monitor read/write activity on a mongo server
2947 (license license:asl2.0)))
2949 (define-public apache-arrow
2951 (name "apache-arrow")
2957 (url "https://github.com/apache/arrow")
2958 (commit (string-append "apache-arrow-" version))))
2959 (file-name (git-file-name name version))
2962 "1x7sdd8lbs3nfqjql1pcgbkjc19bls56zmgjayshkmablvlc4dy3"))))
2963 (build-system cmake-build-system)
2967 (modify-phases %standard-phases
2968 (add-before 'configure 'enter-source-directory
2969 (lambda _ (chdir "cpp") #t))
2970 (add-after 'unpack 'set-env
2972 (setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
2973 (setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
2974 (setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs "flatbuffers"))
2975 (setenv "JEMALLOC_HOME" (assoc-ref %build-inputs "jemalloc"))
2976 (setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson"))
2978 #:build-type "Release"
2980 (list "-DARROW_PYTHON=ON"
2982 ;; Install to PREFIX/lib (the default is
2984 (string-append "-DCMAKE_INSTALL_LIBDIR="
2985 (assoc-ref %outputs "out")
2988 ;; XXX These Guix package offer static
2989 ;; libraries that are not position independent,
2990 ;; and ld fails to link them into the arrow .so
2991 "-DARROW_WITH_SNAPPY=OFF"
2992 "-DARROW_WITH_ZLIB=OFF"
2993 "-DARROW_WITH_ZSTD=OFF"
2994 "-DARROW_WITH_LZ4=OFF"
2996 ;; Building the tests forces on all the
2997 ;; optional features and the use of static
2999 "-DARROW_BUILD_TESTS=OFF"
3000 "-DARROW_BUILD_STATIC=OFF")))
3003 ("rapidjson" ,rapidjson)
3004 ("brotli" ,google-brotli)
3005 ("flatbuffers" ,flatbuffers)
3006 ;; Arrow is not yet compatible with jemalloc >= 5:
3007 ;; https://issues.apache.org/jira/browse/ARROW-1141
3008 ("jemalloc" ,jemalloc-4.5.0)
3009 ("python-3" ,python)
3010 ("python-numpy" ,python-numpy)))
3011 (home-page "https://arrow.apache.org/")
3012 (synopsis "Columnar in-memory analytics")
3013 (description "Apache Arrow is a columnar in-memory analytics layer
3014 designed to accelerate big data. It houses a set of canonical in-memory
3015 representations of flat and hierarchical data along with multiple
3016 language-bindings for structure manipulation. It also provides IPC and common
3017 algorithm implementations.")
3018 (license license:asl2.0)))
3020 (define-public python-pyarrow
3022 (name "python-pyarrow")
3028 (url "https://github.com/apache/arrow")
3029 (commit (string-append "apache-arrow-" version))))
3030 (file-name (git-file-name name version))
3033 "1x7sdd8lbs3nfqjql1pcgbkjc19bls56zmgjayshkmablvlc4dy3"))))
3034 (build-system python-build-system)
3036 '(#:tests? #f ; XXX Test failures related to missing libhdfs, libhdfs3,
3037 ; and "Unsupported numpy type 22".
3039 (modify-phases %standard-phases
3040 (add-after 'unpack 'enter-source-directory
3041 (lambda _ (chdir "python") #t))
3042 (add-after 'unpack 'set-env
3044 (setenv "ARROW_HOME" (assoc-ref %build-inputs "apache-arrow"))
3047 `(("apache-arrow" ,apache-arrow)
3048 ("python-numpy" ,python-numpy)
3049 ("python-pandas" ,python-pandas)
3050 ("python-six" ,python-six)))
3053 ("python-cython" ,python-cython)
3054 ("python-pytest" ,python-pytest)
3055 ("python-setuptools-scm" ,python-setuptools-scm)))
3056 (home-page "https://arrow.apache.org/docs/python/")
3057 (synopsis "Python bindings for Apache Arrow")
3058 (description "This library provides a Pythonic API wrapper for the reference
3059 Arrow C++ implementation, along with tools for interoperability with pandas,
3060 NumPy, and other traditional Python scientific computing packages.")
3061 (license license:asl2.0)))
3063 (define-public python2-pyarrow
3064 (package-with-python2 python-pyarrow))