gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Vagrant Cascadian <vagrant@reproducible-builds.org>
  14 ;;;
  15 ;;; This file is part of GNU Guix.
  16 ;;;
  17 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  18 ;;; under the terms of the GNU General Public License as published by
  19 ;;; the Free Software Foundation; either version 3 of the License, or (at
  20 ;;; your option) any later version.
  21 ;;;
  22 ;;; GNU Guix is distributed in the hope that it will be useful, but
  23 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  24 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  25 ;;; GNU General Public License for more details.
  26 ;;;
  27 ;;; You should have received a copy of the GNU General Public License
  28 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  29
  30 (define-module (gnu packages package-management)
  31   #:use-module (gnu packages)
  32   #:use-module (gnu packages acl)
  33   #:use-module (gnu packages attr)
  34   #:use-module (gnu packages avahi)
  35   #:use-module (gnu packages autotools)
  36   #:use-module (gnu packages backup)
  37   #:use-module (gnu packages base)
  38   #:use-module (gnu packages bdw-gc)
  39   #:use-module (gnu packages bison)
  40   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  41   #:use-module (gnu packages check)
  42   #:use-module (gnu packages compression)
  43   #:use-module (gnu packages cpio)
  44   #:use-module (gnu packages crypto)
  45   #:use-module (gnu packages curl)
  46   #:use-module (gnu packages dbm)
  47   #:use-module (gnu packages docbook)
  48   #:use-module (gnu packages file)
  49   #:use-module (gnu packages gettext)
  50   #:use-module (gnu packages glib)
  51   #:use-module (gnu packages gnome)
  52   #:use-module (gnu packages gnupg)
  53   #:use-module (gnu packages gnuzilla)
  54   #:use-module (gnu packages graphviz)
  55   #:use-module (gnu packages gtk)
  56   #:use-module (gnu packages guile)
  57   #:use-module (gnu packages guile-xyz)
  58   #:use-module (gnu packages linux)
  59   #:use-module (gnu packages lisp)
  60   #:use-module (gnu packages man)
  61   #:use-module (gnu packages nettle)
  62   #:use-module (gnu packages patchutils)
  63   #:use-module (gnu packages perl)
  64   #:use-module (gnu packages perl-check)
  65   #:use-module (gnu packages pkg-config)
  66   #:use-module (gnu packages popt)
  67   #:use-module (gnu packages python)
  68   #:use-module (gnu packages python-web)
  69   #:use-module (gnu packages python-xyz)
  70   #:use-module (gnu packages serialization)
  71   #:use-module (gnu packages sqlite)
  72   #:use-module (gnu packages ssh)
  73   #:use-module (gnu packages texinfo)
  74   #:use-module (gnu packages time)
  75   #:use-module (gnu packages tls)
  76   #:use-module (gnu packages vim)
  77   #:use-module (gnu packages virtualization)
  78   #:use-module (gnu packages web)
  79   #:use-module (gnu packages xml)
  80   #:use-module (gnu packages xorg)
  81   #:use-module (guix build-system gnu)
  82   #:use-module (guix build-system meson)
  83   #:use-module (guix build-system python)
  84   #:use-module (guix download)
  85   #:use-module (guix gexp)
  86   #:use-module (guix git-download)
  87   #:use-module ((guix licenses) #:prefix license:)
  88   #:use-module (guix packages)
  89   #:use-module (guix utils)
  90   #:use-module (ice-9 match)
  91   #:use-module (srfi srfi-1))
  92
  93 (define (boot-guile-uri arch)
  94   "Return the URI for the bootstrap Guile tarball for ARCH."
  95   (cond ((string=? "armhf" arch)
  96          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  97                         arch "-linux"
  98                         "/20150101/guile-2.0.11.tar.xz"))
  99         ((string=? "aarch64" arch)
 100          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 101                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 102         (else
 103          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 104                         arch "-linux"
 105                         "/20131110/guile-2.0.9.tar.xz"))))
 106
 107 (define-public guix
 108   ;; Latest version of Guix, which may or may not correspond to a release.
 109   ;; Note: the 'update-guix-package.scm' script expects this definition to
 110   ;; start precisely like this.
 111   (let ((version "0.16.0")
 112         (commit "2637cfd7a4894ef2a2a7da3bb46d8815c43d7e75")
 113         (revision 10))
 114     (package
 115       (name "guix")
 116
 117       (version (if (zero? revision)
 118                    version
 119                    (string-append version "-"
 120                                   (number->string revision)
 121                                   "." (string-take commit 7))))
 122       (source (origin
 123                 (method git-fetch)
 124                 (uri (git-reference
 125                       (url "https://git.savannah.gnu.org/r/guix.git")
 126                       (commit commit)))
 127                 (sha256
 128                  (base32
 129                   "1m734gm45x9czqspsagdfxfgw5wiiinyq1s6zc9gfv7d3b2w472k"))
 130                 (file-name (string-append "guix-" version "-checkout"))))
 131       (build-system gnu-build-system)
 132       (arguments
 133        `(#:configure-flags (list
 134                             "--localstatedir=/var"
 135                             "--sysconfdir=/etc"
 136                             (string-append "--with-bash-completion-dir="
 137                                            (assoc-ref %outputs "out")
 138                                            "/etc/bash_completion.d")
 139                             (string-append "--with-libgcrypt-prefix="
 140                                            (assoc-ref %build-inputs
 141                                                       "libgcrypt"))
 142
 143                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 144                             ;; we don't keep a reference to Graphviz, whose
 145                             ;; closure is pretty big (too big for the GuixSD
 146                             ;; installation image.)
 147                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 148
 149                             ;; To avoid problems with the length of shebangs,
 150                             ;; choose a fixed-width and short directory name
 151                             ;; for tests.
 152                             "ac_cv_guix_test_root=/tmp/guix-tests")
 153          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 154
 155          #:modules ((guix build gnu-build-system)
 156                     (guix build utils)
 157                     (srfi srfi-26)
 158                     (ice-9 popen)
 159                     (ice-9 rdelim))
 160
 161          #:phases (modify-phases %standard-phases
 162                     (replace 'bootstrap
 163                       (lambda _
 164                         ;; Make sure 'msgmerge' can modify the PO files.
 165                         (for-each (lambda (po)
 166                                     (chmod po #o666))
 167                                   (find-files "." "\\.po$"))
 168
 169                         (patch-shebang "build-aux/git-version-gen")
 170
 171                         (call-with-output-file ".tarball-version"
 172                           (lambda (port)
 173                             (display ,version port)))
 174
 175                         (invoke "sh" "bootstrap")))
 176                     (add-before 'check 'copy-bootstrap-guile
 177                       (lambda* (#:key system inputs #:allow-other-keys)
 178                         ;; Copy the bootstrap guile tarball in the store used
 179                         ;; by the test suite.
 180                         (define (intern tarball)
 181                           (let ((base (strip-store-file-name tarball)))
 182                             (copy-file tarball base)
 183                             (invoke "./test-env" "guix" "download"
 184                                     (string-append "file://" (getcwd)
 185                                                    "/" base))
 186                             (delete-file base)))
 187
 188
 189                         (intern (assoc-ref inputs "boot-guile"))
 190
 191                         ;; On x86_64 some tests need the i686 Guile.
 192                         ,@(if (and (not (%current-target-system))
 193                                    (string=? (%current-system)
 194                                              "x86_64-linux"))
 195                               '((intern (assoc-ref inputs "boot-guile/i686")))
 196                               '())
 197                         #t))
 198                     (add-after 'unpack 'disable-failing-tests
 199                       ;; XXX FIXME: These tests fail within the build container.
 200                       (lambda _
 201                         (substitute* "tests/syscalls.scm"
 202                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 203                            (string-append "(test-skip 1)\n" all)))
 204                         (substitute* "tests/containers.scm"
 205                           (("^\\(test-(assert|equal)" all)
 206                            (string-append "(test-skip 1)\n" all)))
 207                         (when (file-exists? "tests/guix-environment-container.sh")
 208                           (substitute* "tests/guix-environment-container.sh"
 209                             (("guix environment --version")
 210                              "exit 77\n")))
 211                         #t))
 212                     (add-before 'check 'set-SHELL
 213                       (lambda _
 214                         ;; 'guix environment' tests rely on 'SHELL' having a
 215                         ;; correct value, so set it.
 216                         (setenv "SHELL" (which "sh"))
 217                         #t))
 218                     (add-after 'install 'wrap-program
 219                       (lambda* (#:key inputs outputs #:allow-other-keys)
 220                         ;; Make sure the 'guix' command finds GnuTLS,
 221                         ;; Guile-JSON, and Guile-Git automatically.
 222                         (let* ((out    (assoc-ref outputs "out"))
 223                                (guile  (assoc-ref inputs "guile"))
 224                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 225                                (json   (assoc-ref inputs "guile-json"))
 226                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 227                                (git    (assoc-ref inputs "guile-git"))
 228                                (bs     (assoc-ref inputs
 229                                                   "guile-bytestructures"))
 230                                (ssh    (assoc-ref inputs "guile-ssh"))
 231                                (gnutls (assoc-ref inputs "gnutls"))
 232                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 233                                (deps   (list gcrypt json sqlite gnutls
 234                                              git bs ssh))
 235                                (effective
 236                                 (read-line
 237                                  (open-pipe* OPEN_READ
 238                                              (string-append guile "/bin/guile")
 239                                              "-c" "(display (effective-version))")))
 240                                (path   (string-join
 241                                         (map (cut string-append <>
 242                                                   "/share/guile/site/"
 243                                                   effective)
 244                                              (delete #f deps))
 245                                         ":"))
 246                                (gopath (string-join
 247                                         (map (cut string-append <>
 248                                                   "/lib/guile/" effective
 249                                                   "/site-ccache")
 250                                              (delete #f deps))
 251                                         ":"))
 252                                (locpath (string-append locales "/lib/locale")))
 253
 254                           (wrap-program (string-append out "/bin/guix")
 255                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 256                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 257                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 258
 259                           #t))))))
 260       (native-inputs `(("pkg-config" ,pkg-config)
 261
 262                        ;; XXX: Keep the development inputs here even though
 263                        ;; they're unnecessary, just so that 'guix environment
 264                        ;; guix' always contains them.
 265                        ("autoconf" ,autoconf-wrapper)
 266                        ("automake" ,automake)
 267                        ("gettext" ,gettext-minimal)
 268                        ("texinfo" ,texinfo)
 269                        ("graphviz" ,graphviz)
 270                        ("help2man" ,help2man)
 271                        ("po4a" ,po4a)))
 272       (inputs
 273        `(("bzip2" ,bzip2)
 274          ("gzip" ,gzip)
 275          ("zlib" ,zlib)                           ;for 'guix publish'
 276
 277          ("sqlite" ,sqlite)
 278          ("libgcrypt" ,libgcrypt)
 279
 280          ("guile" ,guile-2.2)
 281
 282          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 283          ;; have it here.
 284          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 285          ;; Some of the tests use "unshare" when it is available.
 286          ("util-linux" ,util-linux)
 287          ,@(if (and (not (%current-target-system))
 288                     (string=? (%current-system) "x86_64-linux"))
 289                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 290                '())
 291
 292          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 293       (propagated-inputs
 294        `(("gnutls" ,gnutls)
 295          ("guile-gcrypt" ,guile-gcrypt)
 296          ("guile-json" ,guile-json)
 297          ("guile-sqlite3" ,guile-sqlite3)
 298          ("guile-ssh" ,guile-ssh)
 299          ("guile-git" ,guile-git)))
 300
 301       (home-page "https://www.gnu.org/software/guix/")
 302       (synopsis "Functional package manager for installed software packages and versions")
 303       (description
 304        "GNU Guix is a functional package manager for the GNU system, and is
 305 also a distribution thereof.  It includes a virtual machine image.  Besides
 306 the usual package management features, it also supports transactional
 307 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 308 the Nix package manager.")
 309       (license license:gpl3+)
 310       (properties '((ftp-server . "alpha.gnu.org"))))))
 311
 312 (define-public guix-daemon
 313   ;; This package is for internal consumption: it allows us to quickly build
 314   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 315   ;; pull'.
 316   (package
 317     (inherit guix)
 318     (properties `((hidden? . #t)))
 319     (name "guix-daemon")
 320
 321     ;; Use a minimum set of dependencies.
 322     (native-inputs
 323      (fold alist-delete (package-native-inputs guix)
 324            '("po4a" "graphviz" "help2man")))
 325     (inputs
 326      `(("gnutls" ,gnutls)
 327        ("guile-git" ,guile-git)
 328        ("guile-json" ,guile-json)
 329        ("guile-gcrypt" ,guile-gcrypt)
 330        ,@(fold alist-delete (package-inputs guix)
 331                '("boot-guile" "boot-guile/i686" "util-linux"))))
 332
 333     (propagated-inputs '())
 334
 335     (arguments
 336      (substitute-keyword-arguments (package-arguments guix)
 337        ((#:configure-flags flags '())
 338         ;; Pretend we have those libraries; we don't actually need them.
 339         `(append ,flags
 340                  '("guix_cv_have_recent_guile_sqlite3=yes"
 341                    "guix_cv_have_recent_guile_ssh=yes")))
 342        ((#:tests? #f #f)
 343         #f)
 344        ((#:phases phases '%standard-phases)
 345         `(modify-phases ,phases
 346            (replace 'build
 347              (lambda _
 348                (invoke "make" "nix/libstore/schema.sql.hh")
 349                (invoke "make" "-j" (number->string
 350                                     (parallel-job-count))
 351                        "guix-daemon")))
 352            (delete 'copy-bootstrap-guile)
 353            (replace 'install
 354              (lambda* (#:key outputs #:allow-other-keys)
 355                (invoke "make" "install-binPROGRAMS"
 356                        "install-nodist_pkglibexecSCRIPTS")
 357
 358                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 359                ;; Here we use a questionable hack where we hard-code root's
 360                ;; current guix, which could be wrong (XXX).  Note that scripts
 361                ;; like 'guix perform-download' do not run as root so we assume
 362                ;; that they have access to /var/guix/profiles/per-user/root.
 363                (let ((out (assoc-ref outputs "out")))
 364                  (substitute* (find-files (string-append out "/libexec"))
 365                    (("exec \".*/bin/guix\"")
 366                     "exec \"${GUIX:-/var/guix/profiles/per-user/root/current-guix/bin/guix}\""))
 367                  #t)))
 368            (delete 'wrap-program)))))))
 369
 370 (define-public guile2.0-guix
 371   (deprecated-package "guile2.0-guix" guix))
 372
 373 (define-public guix-minimal
 374   ;; A version of Guix which is built with the minimal set of dependencies, as
 375   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 376   ;; marked as hidden.
 377   (hidden-package
 378    (package
 379      (inherit guix)
 380      (name "guix-minimal")
 381      (inputs
 382       `(("guile" ,guile-2.2)
 383         ,@(alist-delete "guile" (package-inputs guix))))
 384      (propagated-inputs
 385       (fold alist-delete
 386             (package-propagated-inputs guix)
 387             '("guile-ssh"))))))
 388
 389 (define (source-file? file stat)
 390   "Return true if FILE is likely a source file, false if it is a typical
 391 generated file."
 392   (define (wrong-extension? file)
 393     (or (string-suffix? "~" file)
 394         (member (file-extension file)
 395                 '("o" "a" "lo" "so" "go"))))
 396
 397   (match (basename file)
 398     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 399      #f)
 400     ((? wrong-extension?)
 401      #f)
 402     (_
 403      #t)))
 404
 405 (define-public current-guix-package
 406   ;; This parameter allows callers to override the package that 'current-guix'
 407   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 408   ;; for instance because it's not running from a source code checkout.
 409   (make-parameter #f))
 410
 411 (define-public current-guix
 412   (let* ((repository-root (canonicalize-path
 413                            (string-append (current-source-directory)
 414                                           "/../..")))
 415          (select? (delay (or (git-predicate repository-root)
 416                              source-file?))))
 417     (lambda ()
 418       "Return a package representing Guix built from the current source tree.
 419 This works by adding the current source tree to the store (after filtering it
 420 out) and returning a package that uses that as its 'source'."
 421       (or (current-guix-package)
 422           (package
 423             (inherit guix)
 424             (version (string-append (package-version guix) "+"))
 425             (source (local-file repository-root "guix-current"
 426                                 #:recursive? #t
 427                                 #:select? (force select?))))))))
 428
 429 \f
 430 ;;;
 431 ;;; Other tools.
 432 ;;;
 433
 434 (define-public nix
 435   (package
 436     (name "nix")
 437     (version "2.0.4")
 438     (source (origin
 439              (method url-fetch)
 440              (uri (string-append "http://nixos.org/releases/nix/nix-"
 441                                  version "/nix-" version ".tar.xz"))
 442              (sha256
 443               (base32
 444                "0ss9svxlh1pvrdmnqjvjyqjmbqmrdbyfarvbb14i9d4bggzl0r8n"))))
 445     (build-system gnu-build-system)
 446     (native-inputs `(("pkg-config" ,pkg-config)))
 447     (inputs `(("curl" ,curl)
 448               ("bzip2" ,bzip2)
 449               ("libgc" ,libgc)
 450               ("libseccomp" ,libseccomp)
 451               ("libsodium" ,libsodium)
 452               ("openssl" ,openssl)
 453               ("sqlite" ,sqlite)
 454               ("xz" ,xz)))
 455     (home-page "https://nixos.org/nix/")
 456     (synopsis "The Nix package manager")
 457     (description
 458      "Nix is a purely functional package manager.  This means that it treats
 459 packages like values in purely functional programming languages such as
 460 Haskell—they are built by functions that don't have side-effects, and they
 461 never change after they have been built.  Nix stores packages in the Nix
 462 store, usually the directory /nix/store, where each package has its own unique
 463 sub-directory.")
 464     (license license:lgpl2.1+)))
 465
 466 (define-public stow
 467   (package
 468     (name "stow")
 469     (version "2.2.2")
 470     (source (origin
 471               (method url-fetch)
 472               (uri (string-append "mirror://gnu/stow/stow-"
 473                                   version ".tar.gz"))
 474               (sha256
 475                (base32
 476                 "1pvky9fayms4r6fhns8jd0vavszd7d979w62vfd5n88v614pdxz2"))))
 477     (build-system gnu-build-system)
 478     (inputs
 479      `(("perl" ,perl)))
 480     (native-inputs
 481      `(("perl-test-simple" ,perl-test-simple)
 482        ("perl-test-output" ,perl-test-output)
 483        ("perl-capture-tiny" ,perl-capture-tiny)
 484        ("perl-io-stringy" ,perl-io-stringy)))
 485     (home-page "https://www.gnu.org/software/stow/")
 486     (synopsis "Managing installed software packages")
 487     (description
 488      "GNU Stow is a symlink manager.  It generates symlinks to directories
 489 of data and makes them appear to be merged into the same directory.  It is
 490 typically used for managing software packages installed from source, by
 491 letting you install them apart in distinct directories and then create
 492 symlinks to the files in a common directory such as /usr/local.")
 493     (license license:gpl2+)))
 494
 495 (define-public rpm
 496   (package
 497     (name "rpm")
 498     (version "4.14.2")
 499     (source (origin
 500               (method url-fetch)
 501               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 502                                   (version-major+minor version) ".x/rpm-"
 503                                   version ".tar.bz2"))
 504               (sha256
 505                (base32
 506                 "0armd7dqr8bl0isx8l4xlylm7dikasmxhhcbz336fkp2x30w5jw0"))))
 507     (build-system gnu-build-system)
 508     (arguments
 509      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 510                            "--enable-python"
 511                            "--without-lua")
 512        #:phases (modify-phases %standard-phases
 513                   (add-before 'configure 'set-nss-library-path
 514                     (lambda* (#:key inputs #:allow-other-keys)
 515                       (let ((nss (assoc-ref inputs "nss")))
 516                         (setenv "LIBRARY_PATH"
 517                                 (string-append (getenv "LIBRARY_PATH") ":"
 518                                                nss "/lib/nss"))
 519                         #t))))))
 520     (native-inputs
 521      `(("pkg-config" ,pkg-config)))
 522     (inputs
 523      `(("python" ,python-2)
 524        ("xz" ,xz)
 525        ("bdb" ,bdb)
 526        ("popt" ,popt)
 527        ("nss" ,nss)
 528        ("nspr" ,nspr)
 529        ("libarchive" ,libarchive)
 530        ("nettle" ,nettle)            ;XXX: actually a dependency of libarchive
 531        ("file" ,file)
 532        ("bzip2" ,bzip2)
 533        ("zlib" ,zlib)
 534        ("cpio" ,cpio)))
 535     (home-page "http://rpm.org/")
 536     (synopsis "The RPM Package Manager")
 537     (description
 538      "The RPM Package Manager (RPM) is a command-line driven package
 539 management system capable of installing, uninstalling, verifying, querying,
 540 and updating computer software packages.  Each software package consists of an
 541 archive of files along with information about the package like its version, a
 542 description.  There is also a library permitting developers to manage such
 543 transactions from C or Python.")
 544
 545     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 546     (license license:gpl2+)))
 547
 548 (define-public diffoscope
 549   (package
 550     (name "diffoscope")
 551     (version "113")
 552     (source (origin
 553               (method url-fetch)
 554               (uri (pypi-uri name version))
 555               (sha256
 556                (base32
 557                 "10wjri6vsqxf2nb7jjhsq38qlpf407b4qrdczrk696aa1v71i44w"))))
 558     (build-system python-build-system)
 559     (arguments
 560      `(#:phases (modify-phases %standard-phases
 561                   ;; setup.py mistakenly requires python-magic from PyPi, even
 562                   ;; though the Python bindings of `file` are sufficient.
 563                   ;; https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815844
 564                   (add-after 'unpack 'dependency-on-python-magic
 565                     (lambda _
 566                       (substitute* "setup.py"
 567                         (("'python-magic',") ""))))
 568                   ;; This test is broken because our `file` package has a
 569                   ;; bug in berkeley-db file type detection.
 570                   (add-after 'unpack 'remove-berkeley-test
 571                     (lambda _
 572                       (delete-file "tests/comparators/test_berkeley_db.py")
 573                       #t))
 574                   (add-after 'unpack 'embed-tool-references
 575                     (lambda* (#:key inputs #:allow-other-keys)
 576                       (substitute* "diffoscope/comparators/utils/compare.py"
 577                         (("\\['xxd',")
 578                          (string-append "['" (which "xxd") "',")))
 579                       (substitute* "diffoscope/comparators/elf.py"
 580                         (("@tool_required\\('readelf'\\)") "")
 581                         (("get_tool_name\\('readelf'\\)")
 582                          (string-append "'" (which "readelf") "'")))
 583                       (substitute* "diffoscope/comparators/directory.py"
 584                         (("@tool_required\\('stat'\\)") "")
 585                         (("@tool_required\\('getfacl'\\)") "")
 586                         (("\\['stat',")
 587                          (string-append "['" (which "stat") "',"))
 588                         (("\\['getfacl',")
 589                          (string-append "['" (which "getfacl") "',")))
 590                       #t))
 591                   (add-before 'check 'delete-failing-test
 592                     (lambda _
 593                       (delete-file "tests/test_tools.py") ;this requires /sbin to be on the path
 594                       #t)))))
 595     (inputs `(("rpm" ,rpm)                        ;for rpm-python
 596               ("python-file" ,python-file)
 597               ("python-debian" ,python-debian)
 598               ("python-libarchive-c" ,python-libarchive-c)
 599               ("python-tlsh" ,python-tlsh)
 600               ("acl" ,acl)                        ;for getfacl
 601               ("colordiff" ,colordiff)
 602               ("xxd" ,xxd)
 603
 604               ;; Below are modules used for tests.
 605               ("python-pytest" ,python-pytest)
 606               ("python-chardet" ,python-chardet)))
 607     (home-page "https://diffoscope.org/")
 608     (synopsis "Compare files, archives, and directories in depth")
 609     (description
 610      "Diffoscope tries to get to the bottom of what makes files or directories
 611 different.  It recursively unpacks archives of many kinds and transforms
 612 various binary formats into more human readable forms to compare them.  It can
 613 compare two tarballs, ISO images, or PDFs just as easily.")
 614     (license license:gpl3+)))
 615
 616 (define-public trydiffoscope
 617  (package
 618    (name "trydiffoscope")
 619    (version "67.0.1")
 620    (source
 621     (origin
 622       (method git-fetch)
 623       (uri (git-reference
 624             (url "https://salsa.debian.org/reproducible-builds/trydiffoscope.git")
 625             (commit version)))
 626       (file-name (git-file-name name version))
 627       (sha256
 628        (base32
 629         "03b66cjii7l2yiwffj6ym6mycd5drx7prfp4j2550281pias6mjh"))))
 630     (arguments
 631      `(#:phases
 632        (modify-phases %standard-phases
 633          (add-after 'install 'install-doc
 634            (lambda* (#:key outputs #:allow-other-keys)
 635              (let* ((share (string-append (assoc-ref outputs "out") "/share/")))
 636                (mkdir-p (string-append share "/man/man1/" ))
 637                (invoke "rst2man.py"
 638                        "trydiffoscope.1.rst"
 639                        (string-append share "/man/man1/trydiffoscope.1"))
 640                (mkdir-p (string-append share "/doc/" ,name "-" ,version))
 641                (install-file "./README.rst"
 642                           (string-append share "/doc/" ,name "-" ,version)))
 643              #t)))))
 644     (propagated-inputs
 645      `(("python-requests" ,python-requests)))
 646     (native-inputs
 647      `(("gzip" ,gzip)
 648        ("python-docutils" ,python-docutils)))
 649     (build-system python-build-system)
 650     (home-page "https://try.diffoscope.org")
 651     (synopsis "Client for remote diffoscope service")
 652     (description "This is a client for the @url{https://try.diffoscope.org,
 653 remote diffoscope service}.
 654
 655 Diffoscope tries to get to the bottom of what makes files or directories
 656 different.  It recursively unpacks archives of many kinds and transforms
 657 various binary formats into more human readable forms to compare them.  It can
 658 compare two tarballs, ISO images, or PDFs just as easily.
 659
 660 Results are displayed by default, stored as local text or html files, or made
 661 available via a URL on @url{https://try.diffoscope.org}.  Results stored on the
 662 server are purged after 30 days.")
 663     (license license:gpl3+)))
 664
 665 (define-public python-anaconda-client
 666   (package
 667     (name "python-anaconda-client")
 668     (version "1.6.3")
 669     (source
 670      (origin
 671        (method url-fetch)
 672        (uri (string-append "https://github.com/Anaconda-Platform/"
 673                            "anaconda-client/archive/" version ".tar.gz"))
 674        (file-name (string-append name "-" version ".tar.gz"))
 675        (sha256
 676         (base32
 677          "1wv4wi6k5jz7rlwfgvgfdizv77x3cr1wa2aj0k1595g7fbhkjhz2"))))
 678     (build-system python-build-system)
 679     (propagated-inputs
 680      `(("python-pyyaml" ,python-pyyaml)
 681        ("python-requests" ,python-requests)
 682        ("python-clyent" ,python-clyent)))
 683     (native-inputs
 684      `(("python-pytz" ,python-pytz)
 685        ("python-dateutil" ,python-dateutil)
 686        ("python-mock" ,python-mock)
 687        ("python-coverage" ,python-coverage)
 688        ("python-pillow" ,python-pillow)))
 689     (arguments
 690      `(#:phases
 691        (modify-phases %standard-phases
 692          ;; This is needed for some tests.
 693          (add-before 'check 'set-up-home
 694            (lambda* _ (setenv "HOME" "/tmp") #t))
 695          (add-before 'check 'remove-network-tests
 696            (lambda* _
 697              ;; Remove tests requiring a network connection
 698              (let ((network-tests '("tests/test_upload.py"
 699                                     "tests/test_authorizations.py"
 700                                     "tests/test_login.py"
 701                                     "tests/test_whoami.py"
 702                                     "utils/notebook/tests/test_data_uri.py"
 703                                     "utils/notebook/tests/test_base.py"
 704                                     "utils/notebook/tests/test_downloader.py"
 705                                     "inspect_package/tests/test_conda.py")))
 706                (with-directory-excursion "binstar_client"
 707                  (for-each delete-file network-tests)))
 708              #t)))))
 709     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 710     (synopsis "Anaconda Cloud command line client library")
 711     (description
 712      "Anaconda Cloud command line client library provides an interface to
 713 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 714 environments.")
 715     (license license:bsd-3)))
 716
 717 (define-public python2-anaconda-client
 718   (package-with-python2 python-anaconda-client))
 719
 720 (define-public python-conda
 721   (package
 722     (name "python-conda")
 723     (version "4.3.16")
 724     (source
 725      (origin
 726        (method url-fetch)
 727        (uri (string-append "https://github.com/conda/conda/archive/"
 728                            version ".tar.gz"))
 729        (file-name (string-append name "-" version ".tar.gz"))
 730        (sha256
 731         (base32
 732          "1jq8hyrc5npb5sf4vw6s6by4602yj8f79vzpbwdfgpkn02nfk1dv"))))
 733     (build-system python-build-system)
 734     (arguments
 735      `(#:phases
 736        (modify-phases %standard-phases
 737          (add-before 'build 'create-version-file
 738            (lambda _
 739              (with-output-to-file "conda/.version"
 740                (lambda () (display ,version)))
 741              #t))
 742          (add-before 'check 'remove-failing-tests
 743            (lambda _
 744              ;; These tests require internet/network access
 745              (let ((network-tests '("test_cli.py"
 746                                     "test_create.py"
 747                                     "test_export.py"
 748                                     "test_fetch.py"
 749                                     "test_history.py"
 750                                     "test_info.py"
 751                                     "test_install.py"
 752                                     "test_priority.py"
 753                                     "conda_env/test_cli.py"
 754                                     "conda_env/test_create.py"
 755                                     "conda_env/specs/test_notebook.py"
 756                                     "conda_env/utils/test_notebooks.py"
 757                                     "core/test_index.py"
 758                                     "core/test_repodata.py")))
 759                (with-directory-excursion "tests"
 760                  (for-each delete-file network-tests)
 761
 762                  ;; FIXME: This test creates a file, then deletes it and tests
 763                  ;; that the file was deleted.  For some reason it fails when
 764                  ;; building with guix, but does not when you run it in the
 765                  ;; directory left when you build with the --keep-failed
 766                  ;; option
 767                  (delete-file "gateways/disk/test_delete.py")
 768                  #t))))
 769          (replace 'check
 770            (lambda _
 771              (setenv "HOME" "/tmp")
 772              (invoke "py.test"))))))
 773     (native-inputs
 774      `(("python-cytoolz" ,python-cytoolz)
 775        ("python-ruamel.yaml" ,python-ruamel.yaml)
 776        ("python-requests" ,python-requests)
 777        ("python-pycosat" ,python-pycosat)
 778        ("python-pytest" ,python-pytest)
 779        ("python-responses" ,python-responses)
 780        ("python-pyyaml" ,python-pyyaml)
 781        ("python-anaconda-client" ,python-anaconda-client)))
 782     (home-page "https://github.com/conda/conda")
 783     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 784     (description
 785      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 786 is the package manager used by Anaconda installations, but it may be used for
 787 other systems as well.  Conda makes environments first-class citizens, making
 788 it easy to create independent environments even for C libraries.  Conda is
 789 written entirely in Python.
 790
 791 This package provides Conda as a library.")
 792     (license license:bsd-3)))
 793
 794 (define-public python2-conda
 795   (let ((base (package-with-python2
 796                (strip-python2-variant python-conda))))
 797     (package (inherit base)
 798              (native-inputs
 799               `(("python2-enum34" ,python2-enum34)
 800                 ,@(package-native-inputs base))))))
 801
 802 (define-public conda
 803   (package (inherit python-conda)
 804     (name "conda")
 805     (arguments
 806      (substitute-keyword-arguments (package-arguments python-conda)
 807        ((#:phases phases)
 808         `(modify-phases ,phases
 809            (replace 'build
 810              (lambda* (#:key outputs #:allow-other-keys)
 811                ;; This test fails when run before installation.
 812                (delete-file "tests/test_activate.py")
 813
 814                ;; Fix broken defaults
 815                (substitute* "conda/base/context.py"
 816                  (("return sys.prefix")
 817                   (string-append "return \"" (assoc-ref outputs "out") "\""))
 818                  (("return (prefix_is_writable\\(self.root_prefix\\))" _ match)
 819                   (string-append "return False if self.root_prefix == self.conda_prefix else "
 820                                  match)))
 821
 822                ;; The util/setup-testing.py is used to build conda in
 823                ;; application form, rather than the default, library form.
 824                ;; With this, we are able to run commands like `conda --help`
 825                ;; directly on the command line
 826                (invoke "python" "utils/setup-testing.py" "build_py")))
 827            (replace 'install
 828              (lambda* (#:key inputs outputs #:allow-other-keys)
 829                (let* ((out (assoc-ref outputs "out"))
 830                       (target (string-append out "/lib/python"
 831                                              ((@@ (guix build python-build-system)
 832                                                   get-python-version)
 833                                               (assoc-ref inputs "python"))
 834                                              "/site-packages/")))
 835                  ;; The installer aborts if the target directory is not on
 836                  ;; PYTHONPATH.
 837                  (setenv "PYTHONPATH"
 838                          (string-append target ":" (getenv "PYTHONPATH")))
 839
 840                  ;; And it aborts if the directory doesn't exist.
 841                  (mkdir-p target)
 842                  (invoke "python" "utils/setup-testing.py" "install"
 843                          (string-append "--prefix=" out)))))
 844            ;; The "activate" and "deactivate" scripts don't need wrapping.
 845            ;; They also break when they are renamed.
 846            (add-after 'wrap 'undo-wrap
 847              (lambda* (#:key outputs #:allow-other-keys)
 848                (with-directory-excursion (string-append (assoc-ref outputs "out") "/bin/")
 849                  (delete-file "deactivate")
 850                  (rename-file ".deactivate-real" "deactivate")
 851                  (delete-file "activate")
 852                  (rename-file ".activate-real" "activate")
 853                  #t)))))))
 854     (description
 855      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 856 is the package manager used by Anaconda installations, but it may be used for
 857 other systems as well.  Conda makes environments first-class citizens, making
 858 it easy to create independent environments even for C libraries.  Conda is
 859 written entirely in Python.")))
 860
 861 (define-public gwl
 862   (package
 863     (name "gwl")
 864     (version "0.1.1")
 865     (source (origin
 866               (method url-fetch)
 867               (uri (string-append "https://www.guixwl.org/releases/gwl-"
 868                                   version ".tar.gz"))
 869               (sha256
 870                (base32
 871                 "06pm967mq1wyggx7l0nfapw5s0k5qc5r9lawk2v3db868br779a7"))))
 872     (build-system gnu-build-system)
 873     (native-inputs
 874      `(("autoconf" ,autoconf)
 875        ("automake" ,automake)
 876        ("pkg-config" ,pkg-config)))
 877     (inputs
 878      `(("guile" ,guile-2.2)))
 879     (propagated-inputs
 880      `(("guix" ,guix)
 881        ("guile-commonmark" ,guile-commonmark)))
 882     (home-page "https://www.guixwl.org")
 883     (synopsis "Workflow management extension for GNU Guix")
 884     (description "This project provides two subcommands to GNU Guix and
 885 introduces two record types that provide a workflow management extension built
 886 on top of GNU Guix.")
 887     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 888     ;; the web interface modules in gwl/ are licensed AGPL3+,
 889     ;; and the fonts included in this package are licensed OFL1.1.
 890     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 891
 892 (define-public gcab
 893   (package
 894     (name "gcab")
 895     (version "1.2")
 896     (source (origin
 897               (method url-fetch)
 898               (uri (string-append "mirror://gnome/sources/gcab/"
 899                                   version "/gcab-" version ".tar.xz"))
 900               (sha256
 901                (base32
 902                 "038h5kk41si2hc9d9169rrlvp8xgsxq27kri7hv2vr39gvz9cbas"))))
 903     (build-system meson-build-system)
 904     (native-inputs
 905      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
 906        ("intltool" ,intltool)
 907        ("pkg-config" ,pkg-config)
 908        ("vala" ,vala)))
 909     (inputs
 910      `(("glib" ,glib)
 911        ("zlib" ,zlib)))
 912     (arguments
 913      `(#:configure-flags
 914        ;; XXX This ‘documentation’ is for developers, and fails informatively:
 915        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
 916        (list "-Ddocs=false"
 917              "-Dintrospection=false")))
 918     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
 919     (synopsis "Microsoft Cabinet file manipulation library")
 920     (description
 921      "The libgcab library provides GObject functions to read, write, and modify
 922 Microsoft cabinet (.@dfn{CAB}) files.")
 923     (license (list license:gpl2+        ; tests/testsuite.at
 924                    license:lgpl2.1+)))) ; the rest
 925
 926 (define-public msitools
 927   (package
 928     (name "msitools")
 929     (version "0.99")
 930     (source (origin
 931               (method url-fetch)
 932               (uri (string-append "mirror://gnome/sources/msitools/"
 933                                   version "/msitools-" version ".tar.xz"))
 934               (sha256
 935                (base32
 936                 "0d9nidn5zc81bc30w119933rn2g87mrsqyqkndg20srkbsd96xfl"))))
 937     (build-system gnu-build-system)
 938     (native-inputs
 939      `(("bison" ,bison)
 940        ("pkg-config" ,pkg-config)))
 941     (inputs
 942      `(("gcab" ,gcab)
 943        ("glib" ,glib)
 944        ("libgsf" ,libgsf)
 945        ("libxml2" ,libxml2)
 946        ("uuid" ,util-linux)))
 947     (home-page "https://wiki.gnome.org/msitools")
 948     (synopsis "Windows Installer file manipulation tool")
 949     (description
 950      "msitools is a collection of command-line tools to inspect, extract, build,
 951 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
 952 for packaging and deployment of cross-compiled Windows applications.")
 953     (license license:lgpl2.1+)))
 954
 955 (define-public libostree
 956   (package
 957     (name "libostree")
 958     (version "2018.9.1")
 959     (source (origin
 960               (method url-fetch)
 961               (uri (string-append
 962                     "https://github.com/ostreedev/ostree/releases/download/v"
 963                     (version-major+minor version) "/libostree-" version ".tar.xz"))
 964               (sha256
 965                (base32
 966                 "01mygpkbl9sk2vr3hjbpih6qlg8lwx0q5lklm09f7jfwfpnwyqzj"))))
 967     (build-system gnu-build-system)
 968     (arguments
 969      '(#:phases
 970        (modify-phases %standard-phases
 971          (add-before 'check 'pre-check
 972            (lambda _
 973              ;; Don't try to use the non-existing '/var/tmp' as test
 974              ;; directory.
 975              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
 976              #t)))
 977        ;; XXX: fails with:
 978        ;;     tap-driver.sh: internal error getting exit status
 979        ;;     tap-driver.sh: fatal: I/O or internal error
 980        #:tests? #f))
 981     (native-inputs
 982      `(("attr" ,attr)                   ; for tests
 983        ("bison" ,bison)
 984        ("glib:bin" ,glib "bin")          ; for 'glib-mkenums'
 985        ("gobject-introspection" ,gobject-introspection)
 986        ("pkg-config" ,pkg-config)
 987        ("xsltproc" ,libxslt)))
 988     (inputs
 989      `(("avahi" ,avahi)
 990        ("docbook-xml" ,docbook-xml-4.2)
 991        ("docbook-xsl" ,docbook-xsl)
 992        ("e2fsprogs" ,e2fsprogs)
 993        ("fuse" ,fuse)
 994        ("glib" ,glib)
 995        ("gpgme" ,gpgme)
 996        ("libarchive" ,libarchive)
 997        ("libsoup" ,libsoup)
 998        ("nettle" ,nettle)               ; required by 'libarchive.la'
 999        ("util-linux" ,util-linux)))
1000     (home-page "https://ostree.readthedocs.io/en/latest/")
1001     (synopsis "Operating system and container binary deployment and upgrades")
1002     (description
1003      "@code{libostree} is both a shared library and suite of command line
1004 tools that combines a \"git-like\" model for committing and downloading
1005 bootable filesystem trees, along with a layer for deploying them and managing
1006 the bootloader configuration.")
1007     (license license:lgpl2.0+)))
1008
1009 (define-public flatpak
1010   (package
1011    (name "flatpak")
1012    (version "1.2.3")
1013    (source
1014     (origin
1015      (method url-fetch)
1016      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1017                          version "/flatpak-" version ".tar.xz"))
1018      (sha256
1019       (base32
1020        "0i0dn3w3545lvmjlzqj3j70lk8yrq64r9frp1rk6a161gwq20ixv"))))
1021    (build-system gnu-build-system)
1022    (arguments
1023     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
1024       #:configure-flags (list
1025                          "--enable-documentation=no" ;; FIXME
1026                          "--enable-system-helper=no"
1027                          "--localstatedir=/var"
1028                          (string-append "--with-system-bubblewrap="
1029                                         (assoc-ref %build-inputs "bubblewrap")
1030                                         "/bin/bwrap"))))
1031    (native-inputs `(("bison" ,bison)
1032                     ("gettext" ,gnu-gettext)
1033                     ("glib:bin" ,glib "bin") ; for glib-mkenums + gdbus-codegen
1034                     ("gobject-introspection" ,gobject-introspection)
1035                     ("libcap" ,libcap)
1036                     ("pkg-config" ,pkg-config)))
1037    (inputs `(("appstream-glib" ,appstream-glib)
1038              ("bubblewrap" ,bubblewrap)
1039              ("dconf" ,dconf)
1040              ("gdk-pixbuf" ,gdk-pixbuf)
1041              ("gpgme" ,gpgme)
1042              ("json-glib" ,json-glib)
1043              ("libarchive" ,libarchive)
1044              ("libostree" ,libostree)
1045              ("libseccomp" ,libseccomp)
1046              ("libsoup" ,libsoup)
1047              ("libxau" ,libxau)
1048              ("libxml2" ,libxml2)
1049              ("nettle" ,nettle)
1050              ("util-linux" ,util-linux)))
1051    (home-page "https://flatpak.org")
1052    (synopsis "System for building, distributing, and running sandboxed desktop
1053 applications")
1054    (description "Flatpak is a system for building, distributing, and running
1055 sandboxed desktop applications on GNU/Linux.")
1056    (license license:lgpl2.1+)))