gnu: emacs-svg-icon: Fix grammar.
[jackhill/guix/guix.git] / gnu / packages / julia-xyz.scm
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a1315b7f 1;;; GNU Guix --- Functional package management for GNU
f7a98af0 2;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
35044d3e 3;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
a1315b7f 4;;;
5;;; This file is part of GNU Guix.
6;;;
7;;; GNU Guix is free software; you can redistribute it and/or modify it
8;;; under the terms of the GNU General Public License as published by
9;;; the Free Software Foundation; either version 3 of the License, or (at
10;;; your option) any later version.
11;;;
12;;; GNU Guix is distributed in the hope that it will be useful, but
13;;; WITHOUT ANY WARRANTY; without even the implied warranty of
14;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15;;; GNU General Public License for more details.
16;;;
17;;; You should have received a copy of the GNU General Public License
18;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
19
20(define-module (gnu packages julia-xyz)
21 #:use-module ((guix licenses) #:prefix license:)
22 #:use-module (guix packages)
23 #:use-module (guix git-download)
3291e4ba 24 #:use-module (guix build-system julia)
4d69758f 25 #:use-module (gnu packages gcc)
73052c70 26 #:use-module (gnu packages maths)
3291e4ba 27 #:use-module (gnu packages tls))
a1315b7f 28
651a5573 29(define-public julia-abstractffts
30 (package
31 (name "julia-abstractffts")
32 (version "1.0.1")
33 (source
34 (origin
35 (method git-fetch)
36 (uri (git-reference
37 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
38 (commit (string-append "v" version))))
39 (file-name (git-file-name name version))
40 (sha256
41 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
42 (build-system julia-build-system)
43 (inputs ;required for tests
44 `(("julia-unitful" ,julia-unitful)))
45 (home-page "https://github.com/JuliaGPU/Adapt.jl")
46 (synopsis "General framework for fast Fourier transforms (FFTs)")
47 (description "This package allows multiple FFT packages to co-exist with
48the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
49mainly not intended to be used directly. Instead, developers of packages that
50implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
51types/functions defined in AbstractFFTs.")
52 (license license:expat)))
53
20767b9b 54(define-public julia-adapt
55 (package
56 (name "julia-adapt")
57 (version "3.1.1")
58 (source
59 (origin
60 (method git-fetch)
61 (uri (git-reference
62 (url "https://github.com/JuliaGPU/Adapt.jl")
63 (commit (string-append "v" version))))
81d45a66 64 (file-name (git-file-name name version))
20767b9b 65 (sha256
66 (base32 "1lks6k3a1gvwlplld47nh6xfy3nnlpc0vhkzg6zg0qn33qdmavrg"))))
67 (build-system julia-build-system)
68 (home-page "https://github.com/JuliaGPU/Adapt.jl")
69 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
70 (description "This Julia package provides the @code{adapt(T, x)} function
71acts like @code{convert(T, x)}, but without the restriction of returning a
72@code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
73be GPU compatible without throwing away the wrapper.")
74 (license license:expat)))
75
03010d5d 76(define-public julia-benchmarktools
77 (package
78 (name "julia-benchmarktools")
79 (version "0.5.0")
80 (source
81 (origin
82 (method git-fetch)
83 (uri (git-reference
84 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
85 (commit (string-append "v" version))))
86 (file-name (git-file-name name version))
87 (sha256
88 (base32 "0nsx21m3i5h22lkgyrmfj6r085va6ag40khwssqs8y7l0wz98lvp"))))
89 (build-system julia-build-system)
90 (propagated-inputs `(("julia-json" ,julia-json)))
91 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
92 (synopsis "Benchmarking framework for the Julia language")
93 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
94code easy by supplying a framework for writing and running groups of
95benchmarks as well as comparing benchmark results.")
96 (license license:expat)))
97
52d09b1f 98(define-public julia-bufferedstreams
99 (package
100 (name "julia-bufferedstreams")
101 (version "1.0.0")
102 (source
103 (origin
104 (method git-fetch)
105 (uri (git-reference
106 (url "https://github.com/BioJulia/BufferedStreams.jl")
107 (commit (string-append "v" version))))
108 (file-name (git-file-name name version))
109 (sha256
110 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
111 (build-system julia-build-system)
112 ;; The package is old and tests are using undefined functions. They also
113 ;; freeze, see
114 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
115 (arguments
116 '(#:tests? #f
117 #:julia-package-name "BufferedStreams"))
118 (propagated-inputs `(("julia-compat" ,julia-compat)))
119 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
120 (synopsis "Fast composable IO streams")
121 (description "@code{BufferedStreams.jl} provides buffering for IO
122operations. It can wrap any @code{IO} type automatically making incremental
123reading and writing faster.")
124 (license license:expat)))
125
b91ad832 126(define-public julia-calculus
127 (package
128 (name "julia-calculus")
129 (version "0.5.1")
130 (source
131 (origin
132 (method git-fetch)
133 (uri (git-reference
134 (url "https://github.com/JuliaMath/Calculus.jl")
135 (commit (string-append "v" version))))
136 (file-name (git-file-name name version))
137 (sha256
138 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
139 (build-system julia-build-system)
140 (home-page "https://github.com/JuliaMath/Calculus.jl")
141 (synopsis "Common utilities for automatic differentiation")
142 (description "This package provides tools for working with the basic
143calculus operations of differentiation and integration. The @code{Calculus}
144package produces approximate derivatives by several forms of finite
145differencing or produces exact derivative using symbolic differentiation. It
146can also be used to compute definite integrals by different numerical
147methods.")
148 (license license:expat)))
149
397f8c48 150(define-public julia-chainrules
151 (package
152 (name "julia-chainrules")
153 (version "0.7.54")
154 (source
155 (origin
156 (method git-fetch)
157 (uri (git-reference
158 (url "https://github.com/JuliaDiff/ChainRules.jl")
159 (commit (string-append "v" version))))
160 (file-name (git-file-name name version))
161 (sha256
162 (base32 "1x4w71v8cw0vpba47h8f5xq4gyjfxbcvayzf7m41yg8gf49s9pkf"))))
163 (build-system julia-build-system)
164 (inputs ;required for test
165 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
166 ("julia-finitedifferences" ,julia-finitedifferences)
167 ("julia-nanmath" ,julia-nanmath)
168 ("julia-specialfunctions" ,julia-specialfunctions)))
169 (propagated-inputs
170 `(("julia-chainrulescore" ,julia-chainrulescore)
171 ("julia-compat" ,julia-compat)
172 ("julia-reexport" ,julia-reexport)
173 ("julia-requires" ,julia-requires)))
174 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
175 (synopsis "Common utilities for automatic differentiation")
176 (description "The is package provides a variety of common utilities that
177can be used by downstream automatic differentiation (AD) tools to define and
178execute forward-, reverse-, and mixed-mode primitives.")
179 (license license:expat)))
180
bb1ca1f3 181(define-public julia-chainrulescore
182 (package
183 (name "julia-chainrulescore")
184 (version "0.9.29")
185 (source
186 (origin
187 (method git-fetch)
188 (uri (git-reference
189 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
190 (commit (string-append "v" version))))
191 (file-name (git-file-name name version))
192 (sha256
193 (base32 "1k0iayw39n1ikkkhvyi4498vsnzc94skqs41gnd15632gxjfvki4"))))
194 (build-system julia-build-system)
195 (inputs ;required for tests
196 `(("julia-benchmarktools" ,julia-benchmarktools)
197 ("julia-staticarrays" ,julia-staticarrays)))
198 (propagated-inputs
199 `(("julia-compat" ,julia-compat)))
200 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
201 (synopsis "Common utilities used by downstream automatic differentiation tools")
202 (description "The package provides a light-weight dependency for defining
203sensitivities for functions without the need to depend on ChainRules itself.")
204 (license license:expat)))
205
9eb29396 206(define-public julia-chainrulestestutils
207 (package
208 (name "julia-chainrulestestutils")
209 (version "0.6.4")
210 (source
211 (origin
212 (method git-fetch)
213 (uri (git-reference
214 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
215 (commit (string-append "v" version))))
216 (file-name (git-file-name name version))
217 (sha256
218 (base32 "1pzs947adnb3cx1qd0cxp2fidk9szz0zsqbas90z1lhydykkvkil"))))
219 (build-system julia-build-system)
220 (propagated-inputs
221 `(("julia-chainrulescore" ,julia-chainrulescore)
222 ("julia-compat" ,julia-compat)
223 ("julia-finitedifference" ,julia-finitedifferences)))
224 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
225 (synopsis "Common utilities used by downstream automatic differentiation tools")
226 (description "This package is designed to help in testing
227@code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
228entry points are @code{ChainRulesTestUtils.frule_test},
229@code{ChainRulesTestUtils.rrule_test}, and
230@code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
231rules against numerical differentiation (using @code{FiniteDifferences.jl}).
232
233@code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
234can be a test-only dependency, allowing it to have potentially heavy
235dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
236 (license license:expat)))
237
13a8b866 238(define-public julia-colors
239 (package
240 (name "julia-colors")
241 (version "0.12.6")
242 (source
243 (origin
244 (method git-fetch)
245 (uri (git-reference
246 (url "https://github.com/JuliaGraphics/Colors.jl")
247 (commit (string-append "v" version))))
248 (file-name (git-file-name name version))
249 (sha256
250 (base32 "156zsszgwh6bmznsan0zyha6yvcxw3c5mvc5vr2qfsgxbyh36ln6"))))
251 (build-system julia-build-system)
252 (propagated-inputs
253 `(("julia-colortypes" ,julia-colortypes)
254 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
255 ("julia-reexport" ,julia-reexport)))
256 (home-page "https://github.com/JuliaGraphics/Colors.jl")
257 (synopsis "Tools for dealing with color")
258 (description "This package provides a wide array of functions for dealing
259with color. This includes conversion between colorspaces, measuring distance
260between colors, simulating color blindness, parsing colors, and generating
261color scales for graphics.")
262 (license license:expat)))
263
9b8b132e 264(define-public julia-colortypes
265 (package
266 (name "julia-colortypes")
267 (version "0.10.12")
268 (source
269 (origin
270 (method git-fetch)
271 (uri (git-reference
272 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
273 (commit (string-append "v" version))))
274 (file-name (git-file-name name version))
275 (sha256
276 (base32 "176hr3qbz7lncmykks2qaj3cqisnzim7wi5jwsca9ld26wwyvyqq"))))
277 (arguments
278 '(#:tests? #f)) ;require Documenter, not packaged yet
279 (build-system julia-build-system)
280 (propagated-inputs
281 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
282 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
283 (synopsis "Basic color types and constructor")
284 (description "This minimalistic package serves as the foundation for
285working with colors in Julia. It defines basic color types and their
286constructors, and sets up traits and show methods to make them easier to work
287with.")
288 (license license:expat)))
289
2ca38ee4 290(define-public julia-commonsubexpressions
291 (package
292 (name "julia-commonsubexpressions")
293 (version "0.3.0")
294 (source
295 (origin
296 (method git-fetch)
297 (uri (git-reference
298 (url "https://github.com/rdeits/CommonSubexpressions.jl")
299 (commit (string-append "v" version))))
300 (file-name (git-file-name name version))
301 (sha256
302 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
303 (build-system julia-build-system)
304 (propagated-inputs
305 `(("julia-macrotools" ,julia-macrotools)))
306 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
f233bb17
LC
307 (synopsis "@code{@@cse} macro for Julia")
308 (description "This package provides the @code{@@cse} macro, which performs
2ca38ee4 309common subexpression elimination.")
310 (license license:expat)))
311
a1315b7f 312(define-public julia-compat
313 (package
314 (name "julia-compat")
f7a98af0 315 (version "3.25.0")
a1315b7f 316 (source
317 (origin
318 (method git-fetch)
319 (uri (git-reference
320 (url "https://github.com/JuliaLang/Compat.jl")
321 (commit (string-append "v" version))))
54721e7e 322 (file-name (git-file-name name version))
a1315b7f 323 (sha256
f7a98af0 324 (base32 "1m4r5i8mq29xjp3mllh6047n5a78sdyld57m15anrnsjgaapcgby"))))
a1315b7f 325 (build-system julia-build-system)
326 (home-page "https://github.com/JuliaLang/Compat.jl")
327 (synopsis "Compatibility across Julia versions")
328 (description "The Compat package is designed to ease interoperability
329between older and newer versions of the Julia language. The Compat package
330provides a macro that lets you use the latest syntax in a backwards-compatible
331way.")
332 (license license:expat)))
eccd448c 333
4d69758f 334;;; TODO: Remove this autogenerated source package
335;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/>
336(define-public julia-compilersupportlibraries-jll
337 (package
338 (name "julia-compilersupportlibraries-jll")
339 (version "0.4.0+1")
340 (source
341 (origin
342 (method git-fetch)
343 (uri (git-reference
344 (url "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl")
345 (commit (string-append "CompilerSupportLibraries-v" version))))
346 (file-name (git-file-name name version))
347 (sha256
348 (base32 "03j6xdvps259mhdzpjqf41l65w2l9sahvxg4wrp34hcf69wkrzpy"))))
349 (build-system julia-build-system)
350 (arguments
351 `(#:tests? #f ; no runtests.jl
352 #:phases
353 (modify-phases %standard-phases
354 (add-after 'unpack 'override-binary-path
355 (lambda* (#:key inputs #:allow-other-keys)
356 (map
357 (lambda (wrapper)
358 (substitute* wrapper
359 (("generate_wrapper_header.*")
360 (string-append
361 "generate_wrapper_header(\"CompilerSupportLibraries\", \""
362 (assoc-ref inputs "gfortran:lib") "\")\n"))))
363 ;; There's a Julia file for each platform, override them all
364 (find-files "src/wrappers/" "\\.jl$"))
365 #t)))))
366 (inputs ;required by artifacts
367 `(("gfortran:lib" ,gfortran "lib")))
368 (propagated-inputs
369 `(("julia-jllwrappers" ,julia-jllwrappers)))
370 (home-page "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl")
371 (synopsis "Internal wrappers")
372 (description "This package provides compiler support for libraries. It is
373an autogenerated source package constructed using @code{BinaryBuilder.jl}. The
374originating @code{build_tarballs.jl} script can be found on the community
375build tree Yggdrasil.")
376 (license license:expat)))
377
35044d3e 378(define-public julia-constructionbase
379 (let ((commit "de77e2865b554f9b078fd8c35b593cce0554ae02"))
380 (package
381 (name "julia-constructionbase")
382 (version "1.1.0") ;tag not created upstream
383 (source
384 (origin
385 (method git-fetch)
386 (uri (git-reference
387 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
388 (commit commit)))
389 (file-name (git-file-name name version))
390 (sha256
391 (base32 "1y79sfj0rds1skl9j16p9161hwa9khm0xc2m4hgjcbh5zzvyr57v"))))
392 (build-system julia-build-system)
393 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
394 (synopsis "Primitive functions for construction of objects")
395 (description "This very lightweight package provides primitive functions
396for construction of objects.")
397 (license license:expat))))
398
6545cef5 399(define-public julia-datastructures
400 (package
401 (name "julia-datastructures")
402 (version "0.18.9")
403 (source
404 (origin
405 (method git-fetch)
406 (uri (git-reference
407 (url "https://github.com/JuliaCollections/DataStructures.jl")
408 (commit (string-append "v" version))))
409 (file-name (git-file-name name version))
410 (sha256
411 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
412 (propagated-inputs
413 `(("julia-compat" ,julia-compat)
414 ("julia-orderedcollections" ,julia-orderedcollections)))
415 (build-system julia-build-system)
416 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
417 (synopsis "Julia module providing different data structures")
418 (description "This package implements a variety of data structures,
419including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
420@code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
421 (license license:expat)))
422
7bf791ee 423(define-public julia-diffresults
424 (package
425 (name "julia-diffresults")
426 (version "1.0.3")
427 (source
428 (origin
429 (method git-fetch)
430 (uri (git-reference
431 (url "https://github.com/JuliaDiff/DiffResults.jl")
432 (commit (string-append "v" version))))
433 (file-name (git-file-name name version))
434 (sha256
435 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
436 (propagated-inputs
437 `(("julia-staticarrays" ,julia-staticarrays)))
438 (build-system julia-build-system)
439 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
440 (synopsis "In-place differentiation methods of primal values at multi-order")
441 (description "This package provides the @code{DiffResult} type, which can
442be passed to in-place differentiation methods instead of an output buffer.")
443 (license license:expat)))
444
33e5152a 445(define-public julia-diffrules
446 (package
447 (name "julia-diffrules")
448 (version "1.0.2")
449 (source
450 (origin
451 (method git-fetch)
452 (uri (git-reference
453 (url "https://github.com/JuliaDiff/DiffRules.jl")
454 (commit (string-append "v" version))))
455 (file-name (git-file-name name version))
456 (sha256
457 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
458 (propagated-inputs
459 `(("julia-nanmath" ,julia-nanmath)
460 ("julia-specialfunctions" ,julia-specialfunctions)))
461 (build-system julia-build-system)
462 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
463 (synopsis "Primitive differentiation rules")
464 (description "This package provides primitive differentiation rules that
465can be composed via various formulations of the chain rule. Using
466@code{DiffRules}, new differentiation rules can defined, query whether or not
467a given rule exists, and symbolically apply rules to simple Julia expressions.")
468 (license license:expat)))
469
df4be2e9 470(define-public julia-difftests
471 (package
472 (name "julia-difftests")
473 (version "0.1.1")
474 (source
475 (origin
476 (method git-fetch)
477 (uri (git-reference
478 (url "https://github.com/JuliaDiff/DiffTests.jl")
479 (commit (string-append "v" version))))
480 (file-name (git-file-name name version))
481 (sha256
482 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
483 (build-system julia-build-system)
484 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
485 (synopsis "Common test functions for differentiation tools")
486 (description "This package contains a common suite of test functions for
487stressing the robustness of differentiation tools.")
488 (license license:expat)))
489
fffb1e72 490(define-public julia-example
491 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
492 (package
493 (name "julia-example")
494 (version "0.5.4") ;tag not created upstream
495 (source
496 (origin
497 (method git-fetch)
498 (uri (git-reference
499 (url "https://github.com/JuliaLang/Example.jl")
500 (commit commit)))
501 (file-name (git-file-name name version))
502 (sha256
503 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
504 (build-system julia-build-system)
505 (home-page "https://github.com/JuliaLang/Example.jl")
506 (synopsis "Module providing examples")
507 (description "This package provides various examples.")
508 (license license:expat))))
509
a0d3a73f 510(define-public julia-fillarrays
511 (package
512 (name "julia-fillarrays")
513 (version "0.11.7")
514 (source
515 (origin
516 (method git-fetch)
517 (uri (git-reference
518 (url "https://github.com/JuliaArrays/FillArrays.jl")
519 (commit (string-append "v" version))))
520 (file-name (git-file-name name version))
521 (sha256
522 (base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d"))))
523 (build-system julia-build-system)
524 (inputs ;required by tests
525 `(("julia-staticarrays" ,julia-staticarrays)))
526 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
527 (synopsis "Lazy matrix representation")
239f0259 528 (description "This package lazily represents matrices filled with
a0d3a73f 529a single entry, as well as identity matrices. This package exports the
530following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
531@code{Trues} and @code{Falses}.")
532 (license license:expat)))
533
f6c5a898 534(define-public julia-finitedifferences
535 (package
536 (name "julia-finitedifferences")
537 (version "0.12.2")
538 (source
539 (origin
540 (method git-fetch)
541 (uri (git-reference
542 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
543 (commit (string-append "v" version))))
544 (file-name (git-file-name name version))
545 (sha256
546 (base32 "0dcx34026xdpfmbjls3mrknl8ww62kxxfr77kfihbazsfg2gp5b4"))))
547 (build-system julia-build-system)
548 (inputs
549 `(("julia-benchmarktools" ,julia-benchmarktools)))
550 (propagated-inputs
551 `(("julia-chainrulescore" ,julia-chainrulescore)
552 ("julia-richardson" ,julia-richardson)
553 ("julia-staticarrays" ,julia-staticarrays)))
554 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
555 (synopsis "Estimates derivatives with finite differences")
556 (description "This package calculates approximate derivatives numerically
557using finite difference.")
558 (license license:expat)))
559
50f99cc5 560(define-public julia-fixedpointnumbers
561 (package
562 (name "julia-fixedpointnumbers")
563 (version "0.8.4")
564 (source
565 (origin
566 (method git-fetch)
567 (uri (git-reference
568 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
569 (commit (string-append "v" version))))
570 (file-name (git-file-name name version))
571 (sha256
572 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
573 (build-system julia-build-system)
574 (arguments
575 `(#:phases
576 (modify-phases %standard-phases
577 (add-after 'unpack 'disable-failing-test
578 (lambda* (#:key outputs #:allow-other-keys)
579 (substitute* "test/fixed.jl"
580 ;; A deprecation warning is not thrown
581 (("@test_logs.*:warn" all) (string-append "# " all)))
582 #t)))))
583 (propagated-inputs `(("julia-compat" ,julia-compat)))
584 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
585 (synopsis "Fixed point types for Julia")
586 (description "@code{FixedPointNumbers.jl} implements fixed-point number
587types for Julia. A fixed-point number represents a fractional, or
588non-integral, number. In contrast with the more widely known floating-point
589numbers, with fixed-point numbers the decimal point doesn't \"float\":
590fixed-point numbers are effectively integers that are interpreted as being
591scaled by a constant factor. Consequently, they have a fixed number of
592digits (bits) after the decimal (radix) point.")
593 (license license:expat)))
d4987a50 594
57e034d5 595(define-public julia-forwarddiff
596 (package
597 (name "julia-forwarddiff")
598 (version "0.10.17")
599 (source
600 (origin
601 (method git-fetch)
602 (uri (git-reference
603 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
604 (commit (string-append "v" version))))
605 (file-name (git-file-name name version))
606 (sha256
607 (base32 "17xaz4v0zr46p7w873w1fwf31phdnhr0vbdym9yr4flmpzi528jw"))))
608 (build-system julia-build-system)
609 (inputs ;required for tests
610 `(("julia-calculus" ,julia-calculus)
611 ("julia-difftests" ,julia-difftests)))
612 (propagated-inputs
613 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
614 ("julia-diffresults" ,julia-diffresults)
615 ("julia-diffrules" ,julia-diffrules)
616 ("julia-nanmath" ,julia-nanmath)
617 ("julia-specialfunctions" ,julia-specialfunctions)
618 ("julia-staticarrays" ,julia-staticarrays)))
619 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
620 (synopsis "Methods to take multidimensional derivatives")
621 (description "This package implements methods to take derivatives,
622gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
623functions (or any callable object, really) using forward mode automatic
624differentiation (AD).")
625 (license license:expat)))
626
d4987a50 627(define-public julia-http
628 (package
629 (name "julia-http")
630 (version "0.9.2")
631 (source
632 (origin
633 (method git-fetch)
634 (uri (git-reference
635 (url "https://github.com/JuliaWeb/HTTP.jl")
636 (commit (string-append "v" version))))
637 (file-name (git-file-name name version))
638 (sha256
639 (base32 "0ij0yci13c46p92m4zywvcs02nn8pm0abyfffiyhxvva6hq48lyl"))))
640 (build-system julia-build-system)
641 (arguments
642 `(#:phases
643 (modify-phases %standard-phases
644 (add-before 'install 'disable-network-tests
645 (lambda _
646 (substitute* "test/runtests.jl"
647 (("\"async.jl") "# \"async.jl")
648 (("\"client.jl") "# \"client.jl"))
649 (substitute* "test/aws4.jl"
650 (("@testset.*HTTP.request with AWS authentication.*" all)
651 (string-append all "return\n")))
652 (substitute* "test/insert_layers.jl"
653 (("@testset.*Inserted final layer runs handler.*" all)
654 (string-append all "return\n")))
655 (substitute* "test/multipart.jl"
656 (("@testset \"Setting of Content-Type.*" all)
657 (string-append all "return\n"))
658 (("@testset \"Deprecation of .*" all)
659 (string-append all "return\n")))
660 (substitute* "test/websockets.jl"
661 (("@testset.*External Host.*" all)
662 (string-append all "return\n")))
663 (substitute* "test/messages.jl"
664 (("@testset.*Read methods.*" all)
665 (string-append all "return\n"))
666 (("@testset.*Body - .*" all)
667 (string-append all "return\n"))
668 (("@testset.*Write to file.*" all)
669 (string-append all "return\n")))
670 #t)))))
671 (propagated-inputs
672 `(("julia-inifile" ,julia-inifile)
673 ("julia-mbedtls" ,julia-mbedtls)
674 ("julia-uris" ,julia-uris)))
675 ;; required for tests
676 (inputs
677 `(("julia-json" ,julia-json)
678 ("julia-bufferedstreams" ,julia-bufferedstreams)))
679 (home-page "https://juliaweb.github.io/HTTP.jl/")
680 (synopsis "HTTP support for Julia")
681 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
682implementing both a client and a server.")
683 (license license:expat)))
50f99cc5 684
fc781578 685(define-public julia-inifile
686 (package
687 (name "julia-inifile")
688 (version "0.5.0")
689 (source
690 (origin
691 (method git-fetch)
692 (uri (git-reference
693 (url "https://github.com/JuliaIO/IniFile.jl")
694 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
695 (file-name (git-file-name name version))
696 (sha256
697 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
698 (build-system julia-build-system)
699 (home-page "https://github.com/JuliaIO/IniFile.jl")
700 (synopsis "Reading Windows-style INI files")
701 (description "This is a Julia package that defines an IniFile type that
702allows to interface with @file{.ini} files.")
703 (license license:expat)))
704
57653707 705(define-public julia-irtools
706 (package
707 (name "julia-irtools")
708 (version "0.4.2")
709 (source
710 (origin
711 (method git-fetch)
712 (uri (git-reference
713 (url "https://github.com/FluxML/IRTools.jl")
714 (commit (string-append "v" version))))
715 (file-name (git-file-name name version))
716 (sha256
717 (base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y"))))
718 (arguments
719 '(#:tests? #f)) ;require Documenter, not packaged yet
720 (build-system julia-build-system)
721 (propagated-inputs
722 `(("julia-macrotools" ,julia-macrotools)))
723 (home-page "https://github.com/FluxML/IRTools.jl")
724 (synopsis "Simple and flexible IR format")
725 (description "This package provides a simple and flexible IR format,
726expressive enough to work with both lowered and typed Julia code, as well as
727external IRs. It can be used with Julia metaprogramming tools such as
728Cassette.")
729 (license license:expat)))
730
a06db9c1 731(define-public julia-jllwrappers
732 (package
733 (name "julia-jllwrappers")
734 (version "1.2.0")
735 (source
736 (origin
737 (method git-fetch)
738 (uri (git-reference
739 (url "https://github.com/JuliaPackaging/JLLWrappers.jl")
740 (commit (string-append "v" version))))
741 (file-name (git-file-name name version))
742 (sha256
743 (base32 "1sj3mi2dcc13apqfpy401wic5n0pgbck1p98b2g3zw0mln9s83m4"))))
744 (arguments
745 ;; Wants to download stuff
746 '(#:tests? #f
747 #:phases
748 (modify-phases %standard-phases
749 (add-after 'unpack 'custom-override-path
750 (lambda* (#:key inputs #:allow-other-keys)
751 ;; Make @generate_wrapper_header take an optional argument that
752 ;; guix packagers can pass to override the default "override"
753 ;; binary path. This won't be needed when something like
754 ;; https://github.com/JuliaPackaging/JLLWrappers.jl/pull/27
755 ;; will be merged.
756 (substitute* "src/wrapper_generators.jl"
757 (("generate_wrapper_header.*")
758 "generate_wrapper_header(src_name, override_path = nothing)\n")
759 (("pkg_dir = .*" all)
760 (string-append
761 all "\n" "override = something(override_path,"
762 "joinpath(dirname(pkg_dir), \"override\"))\n"))
763 (("@static if isdir.*") "@static if isdir($override)\n")
764 (("return joinpath.*") "return $override\n"))
765 #t)))))
766 (build-system julia-build-system)
767 (home-page "https://github.com/JuliaPackaging/JLLWrappers.jl")
768 (synopsis "Julia macros used by JLL packages")
769 (description "This package contains Julia macros that enable JLL packages
770to generate themselves. It is not intended to be used by users, but rather is
771used in autogenerated packages via @code{BinaryBuilder.jl}.")
772 (license license:expat)))
773
dae521a0 774(define-public julia-json
775 (package
776 (name "julia-json")
777 (version "0.21.1")
778 (source
779 (origin
780 (method git-fetch)
781 (uri (git-reference
782 (url "https://github.com/JuliaIO/JSON.jl")
783 (commit (string-append "v" version))))
784 (file-name (git-file-name name version))
785 (sha256
786 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
787 (build-system julia-build-system)
788 (propagated-inputs
789 `(("julia-datastructures" ,julia-datastructures)
790 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
791 ("julia-parsers" ,julia-parsers)
792 ("julia-offsetarrays" ,julia-offsetarrays)))
793 (home-page "https://github.com/JuliaIO/JSON.jl")
794 (synopsis "JSON parsing and printing library for Julia")
795 (description "@code{JSON.jl} is a pure Julia module which supports parsing
796and printing JSON documents.")
797 (license license:expat)))
798
45debc7b 799(define-public julia-macrotools
800 (package
801 (name "julia-macrotools")
802 (version "0.5.6")
803 (source
804 (origin
805 (method git-fetch)
806 (uri (git-reference
807 (url "https://github.com/FluxML/MacroTools.jl")
808 (commit (string-append "v" version))))
809 (file-name (git-file-name name version))
810 (sha256
811 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
812 (build-system julia-build-system)
813 (home-page "https://fluxml.ai/MacroTools.jl")
814 (synopsis "Tools for working with Julia code and expressions")
815 (description "This library provides tools for working with Julia code and
816expressions. This includes a template-matching system and code-walking tools
817that let you do deep transformations of code.")
818 (license license:expat)))
819
a72d3ca8 820(define-public julia-mbedtls
821 (package
822 (name "julia-mbedtls")
823 (version "1.0.3")
824 (source
825 (origin
826 (method git-fetch)
827 (uri (git-reference
828 (url "https://github.com/JuliaLang/MbedTLS.jl")
829 (commit (string-append "v" version))))
830 (file-name (git-file-name name version))
831 (sha256
832 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
833 (build-system julia-build-system)
834 (arguments
835 `(#:phases
836 (modify-phases %standard-phases
837 (add-before 'install 'disable-network-tests
838 ;; Tries to connect to httpbin.org
839 (lambda _
840 (substitute* "test/runtests.jl"
841 (("testhost =") "return #"))
842 #t)))))
843 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
844 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
845 (synopsis "Apache's mbed TLS library wrapper")
846 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
9a2d7e0f 847TLS} and cryptography C library for Julia.")
a72d3ca8 848 (license license:expat)))
849
3291e4ba 850(define-public julia-mbedtls-jll
851 (package
852 (name "julia-mbedtls-jll")
853 ;; version 2.25.0+0 is not compatible with current mbedtls 2.23.0,
854 ;; upgrade this when mbedtls is updated in guix
855 (version "2.24.0+1")
856 (source
857 (origin
858 (method git-fetch)
859 (uri (git-reference
860 (url "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl")
861 (commit (string-append "MbedTLS-v" version))))
862 (file-name (git-file-name name version))
863 (sha256
864 (base32 "0kk9dlxdh7yms21npgrdfmjbj8q8ng6kdhrzw3jr2d7rp696kp99"))))
865 (build-system julia-build-system)
866 (arguments
867 '(#:tests? #f ; No runtests.jl
868 #:phases
869 (modify-phases %standard-phases
870 (add-after 'unpack 'override-binary-path
871 (lambda* (#:key inputs #:allow-other-keys)
872 (map
873 (lambda (wrapper)
874 (substitute* wrapper
875 (("generate_wrapper_header.*")
876 (string-append
877 "generate_wrapper_header(\"MbedTLS\", \""
878 (assoc-ref inputs "mbedtls-apache") "\")\n"))))
879 ;; There's a Julia file for each platform, override them all
880 (find-files "src/wrappers/" "\\.jl$"))
881 #t)))))
882 (inputs `(("mbedtls-apache" ,mbedtls-apache)))
883 (propagated-inputs `(("julia-jllwrappers" ,julia-jllwrappers)))
884 (home-page "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl")
885 (synopsis "Apache's mbed TLS binary wrappers")
886 (description "This Julia module provides @code{mbed TLS} libraries and
887wrappers.")
888 (license license:expat)))
889
a5edd83d 890(define-public julia-nanmath
891 (package
892 (name "julia-nanmath")
893 (version "0.3.5")
894 (source
895 (origin
896 (method git-fetch)
897 (uri (git-reference
898 (url "https://github.com/mlubin/NaNMath.jl")
899 (commit (string-append "v" version))))
900 (file-name (git-file-name name version))
901 (sha256
902 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
903 (build-system julia-build-system)
904 (home-page "https://github.com/mlubin/NaNMath.jl")
905 (synopsis "Implementations of basic math functions")
906 (description "Implementations of basic math functions which return
907@code{NaN} instead of throwing a @code{DomainError}.")
908 (license license:expat)))
909
eccd448c 910(define-public julia-orderedcollections
911 (package
912 (name "julia-orderedcollections")
913 (version "1.3.2")
914 (source
915 (origin
916 (method git-fetch)
917 (uri (git-reference
918 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
919 (commit (string-append "v" version))))
920 (file-name (git-file-name name version))
921 (sha256
922 (base32 "0sfip1ixghsz91q2s7d62rgzw3gppg42fg6bccxlplqa3hfmbycf"))))
923 (build-system julia-build-system)
924 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
925 (synopsis "Associative containers that preserve insertion order")
926 (description "This package implements @code{OrderedDicts} and
927@code{OrderedSets}, which are similar to containers in base Julia. However,
928during iteration the @code{Ordered*} containers return items in the order in
929which they were added to the collection.")
930 (license license:expat)))
c0c21d77 931
fb634a0e 932(define-public julia-offsetarrays
933 (package
934 (name "julia-offsetarrays")
935 (version "1.5.2")
936 (source
937 (origin
938 (method git-fetch)
939 (uri (git-reference
940 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
941 (commit (string-append "v" version))))
942 (file-name (git-file-name name version))
943 (sha256
944 (base32 "1y3fnssw2hzyghrk6jfcxslab0f8sjkjszh482snfq4k6mkrhy77"))))
945 (build-system julia-build-system)
946 (propagated-inputs
947 `(("julia-adapt" ,julia-adapt)))
948 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
949 (arguments '(#:tests? #f))
950 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
951 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
952 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
953have arbitrary indices, similar to those found in some other programming
954languages like Fortran.")
955 (license license:expat)))
956
73052c70 957;;; TODO: Remove this autogenerated source package
958;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/>
959(define-public julia-openspecfun-jll
960(let ((commit "6c505cce3bdcd9cd2b15b4f9362ec3a42c4da71c"))
961 (package
962 (name "julia-openspecfun-jll")
963 (version "0.5.3+4") ;tag not created upstream
964 (source
965 (origin
966 (method git-fetch)
967 (uri (git-reference
968 (url "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl")
969 (commit commit)))
970 (file-name (git-file-name name version))
971 (sha256
972 (base32 "0bl2gcgndsbiwhwy8fl070cjm1fyf9kxj6gkikgirmzgjl29iakn"))))
973 (build-system julia-build-system)
974 (arguments
975 `(#:tests? #f ; no runtests.jl
976 #:phases
977 (modify-phases %standard-phases
978 (add-after 'unpack 'override-binary-path
979 (lambda* (#:key inputs #:allow-other-keys)
980 (map
981 (lambda (wrapper)
982 (substitute* wrapper
983 (("generate_wrapper_header.*")
984 (string-append
985 "generate_wrapper_header(\"OpenSpecFun\", \""
986 (assoc-ref inputs "openspecfun") "\")\n"))))
987 ;; There's a Julia file for each platform, override them all
988 (find-files "src/wrappers/" "\\.jl$"))
989 #t)))))
990 (inputs
991 `(("openspecfun" ,openspecfun)))
992 (propagated-inputs
993 `(("julia-jllwrappers" ,julia-jllwrappers)
994 ("julia-compilersupportlibraries-jll" ,julia-compilersupportlibraries-jll)))
995 (home-page "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl")
996 (synopsis "Internal wrappers")
997 (description "This package provides a wrapper for OpenSpecFun. It is an
998autogenerated source package constructed using @code{BinaryBuilder.jl}. The
999originating @code{build_tarballs.jl} script can be found on the community
1000build tree Yggdrasil.")
1001 (license license:expat))))
1002
c0c21d77 1003(define-public julia-parsers
1004 (package
1005 (name "julia-parsers")
1006 (version "1.0.15")
1007 (source
1008 (origin
1009 (method git-fetch)
1010 (uri (git-reference
1011 (url "https://github.com/JuliaData/Parsers.jl")
1012 (commit (string-append "v" version))))
1013 (file-name (git-file-name name version))
1014 (sha256
1015 (base32 "16iffl6l28kspgqch48mhi1s8qhspr3cpqcwsph3rqi72lbfqygx"))))
1016 (build-system julia-build-system)
1017 (home-page "https://github.com/JuliaData/Parsers.jl")
1018 (synopsis "Fast parsing machinery for basic types in Julia")
1019 (description "@code{Parsers.jl} is a collection of type parsers and
1020utilities for Julia.")
1021 (license license:expat)))
8f59a9fb 1022
02543b52 1023(define-public julia-reexport
1024 (package
1025 (name "julia-reexport")
1026 (version "1.0.0")
1027 (source
1028 (origin
1029 (method git-fetch)
1030 (uri (git-reference
1031 (url "https://github.com/simonster/Reexport.jl")
1032 (commit version)))
1033 (file-name (git-file-name name version))
1034 (sha256
1035 (base32 "1yhhja1zz6dy5f4fd19bdwd6jwgj7q4w3avzgyg1hjhmdl8jrh0s"))))
1036 (build-system julia-build-system)
1037 (home-page "https://github.com/simonster/Reexport.jl")
1038 (synopsis "Re-export modules and symbols")
1039 (description "This package provides tools to re-export modules and symbols.")
1040 (license license:expat)))
1041
658fca53 1042(define-public julia-requires
1043 (package
1044 (name "julia-requires")
1045 (version "1.1.3")
1046 (source
1047 (origin
1048 (method git-fetch)
1049 (uri (git-reference
1050 (url "https://github.com/JuliaPackaging/Requires.jl/")
1051 (commit (string-append "v" version))))
1052 (file-name (git-file-name name version))
1053 (sha256
1054 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
1055 (build-system julia-build-system)
1056 (inputs ;required for test
1057 `(("julia-example" ,julia-example)))
1058 (propagated-inputs
1059 `(("julia-colors" ,julia-colors)))
1060 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
1061 (synopsis "Faster package loader")
1062 (description "This package make loading packages faster, maybe. It
1063supports specifying glue code in packages which will load automatically when
1064another package is loaded, so that explicit dependencies (and long load times)
1065can be avoided.")
1066 (license license:expat)))
1067
dd7a77c3 1068(define-public julia-richardson
1069 (package
1070 (name "julia-richardson")
1071 (version "1.4.0")
1072 (source
1073 (origin
1074 (method git-fetch)
1075 (uri (git-reference
1076 (url "https://github.com/JuliaMath/Richardson.jl")
1077 (commit (string-append "v" version))))
1078 (file-name (git-file-name name version))
1079 (sha256
1080 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
1081 (build-system julia-build-system)
1082 (home-page "https://juliapackages.com/p/richardson")
1083 (synopsis "Extrapolate function using Richardson method")
1084 (description "This package provides a function extrapolate that
1085extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
1086only at a geometric sequence of points @code{> x0} (or optionally @code{<
1087x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
1088tableau, which adaptively increases the degree of an extrapolation polynomial
1089until convergence is achieved to a desired tolerance (or convergence stalls
1090due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
1091high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
1092other power series in @code{h}.")
1093 (license license:expat)))
1094
3d98a16a 1095(define-public julia-specialfunctions
1096 (package
1097 (name "julia-specialfunctions")
1098 (version "1.3.0")
1099 (source
1100 (origin
1101 (method git-fetch)
1102 (uri (git-reference
1103 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
1104 (commit (string-append "v" version))))
1105 (file-name (git-file-name name version))
1106 (sha256
1107 (base32 "1rfhrrkzi3ils7fklbn35ki1yp5x88fi71qknfwqyw4pk8cf8p80"))))
1108 (build-system julia-build-system)
1109 (inputs
1110 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
1111 (propagated-inputs
1112 `(("julia-chainrulescore" ,julia-chainrulescore)
1113 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
1114 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
1115 (synopsis "Special mathematical functions")
1116 (description "This package provides special mathematical functions,
1117including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
1118cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
1119polygamma functions.")
1120 (license license:expat)))
1121
be802277 1122(define-public julia-staticarrays
1123 (package
1124 (name "julia-staticarrays")
1125 (version "1.0.1")
1126 (source
1127 (origin
1128 (method git-fetch)
1129 (uri (git-reference
1130 (url "https://github.com/JuliaArrays/StaticArrays.jl")
1131 (commit (string-append "v" version))))
1132 (file-name (git-file-name name version))
1133 (sha256
1134 (base32 "01z8bcqwpfkp8p1h1r36pr5cc3798y76zkas7g3206pcsdhvlkz1"))))
1135 (build-system julia-build-system)
1136 (inputs
1137 `(("julia-benchmarktools" ,julia-benchmarktools)))
1138 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
1139 (synopsis "Statically sized arrays")
1140 (description "This package provides a framework for implementing
1141statically sized arrays in Julia, using the abstract type
1142@code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
1143@code{StaticArray} will provide fast implementations of common array and
1144linear algebra operations.")
1145 (license license:expat)))
1146
8f59a9fb 1147(define-public julia-uris
1148 (package
1149 (name "julia-uris")
1150 (version "1.2.0")
1151 (source
1152 (origin
1153 (method git-fetch)
1154 (uri (git-reference
1155 (url "https://github.com/JuliaWeb/URIs.jl")
1156 (commit (string-append "v" version))))
1157 (file-name (git-file-name name version))
1158 (sha256
1159 (base32 "0fqyagsqks5za7m0czafr34m2xh5501f689k9cn5x3npajdnh2r3"))))
1160 (build-system julia-build-system)
1161 (arguments
1162 '(#:julia-package-name "URIs" ;required to run tests
1163 #:phases
1164 (modify-phases %standard-phases
1165 (add-before 'check 'change-dir
1166 ;; Tests must be run from the testdir
1167 (lambda* (#:key source outputs #:allow-other-keys)
1168 (let ((out (assoc-ref outputs "out")))
1169 (chdir
1170 (string-append out "/share/julia/packages/URIs/test")))
1171 #t)))))
1172 ;; required for tests
1173 (inputs `(("julia-json" ,julia-json)))
1174 (home-page "https://github.com/JuliaWeb/URIs.jl")
1175 (synopsis "URI parsing in Julia")
1176 (description "@code{URIs.jl} is a Julia package that allows parsing and
1177working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
11783986.")
1179 (license license:expat)))
a8e3be6a 1180
1181(define-public julia-unitful
1182 (package
1183 (name "julia-unitful")
1184 (version "1.6.0")
1185 (source
1186 (origin
1187 (method git-fetch)
1188 (uri (git-reference
1189 (url "https://github.com/PainterQubits/Unitful.jl")
1190 (commit (string-append "v" version))))
1191 (file-name (git-file-name name version))
1192 (sha256
1193 (base32 "0g5bhlvay9yk11c5dqwbzmb3q7lzj0cq5zchyk39d59fkvvmxvq3"))))
1194 (build-system julia-build-system)
1195 (propagated-inputs
1196 `(("julia-constructionbase" ,julia-constructionbase)))
1197 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
1198 (synopsis "Physical units in Julia")
1199 (description "This package supports SI units and also many other unit
1200system.")
1201 (license license:expat)))
568cebc2 1202
1203(define-public julia-zygoterules
1204 (package
1205 (name "julia-zygoterules")
1206 (version "0.2.1")
1207 (source
1208 (origin
1209 (method git-fetch)
1210 (uri (git-reference
1211 (url "https://github.com/FluxML/ZygoteRules.jl")
1212 (commit (string-append "v" version))))
1213 (file-name (git-file-name name version))
1214 (sha256
1215 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
1216 (build-system julia-build-system)
1217 (propagated-inputs
1218 `(("julia-macrotools" ,julia-macrotools)))
1219 (home-page "https://github.com/FluxML/ZygoteRules.jl")
1220 (synopsis "Add minimal custom gradients to Zygote")
1221 (description "Minimal package which enables to add custom gradients to
1222Zygote, without depending on Zygote itself.")
1223 (license license:expat)))
13f7f06c 1224
1225(define-public julia-zygote
1226 (package
1227 (name "julia-zygote")
1228 (version "0.6.4")
1229 (source
1230 (origin
1231 (method git-fetch)
1232 (uri (git-reference
1233 (url "https://github.com/FluxML/Zygote.jl")
1234 (commit (string-append "v" version))))
1235 (file-name (git-file-name name version))
1236 (sha256
1237 (base32 "1h2ph0lsisbkh8y4xgwzgw9p5zi243q8zzp5gfh3zw9pzkx6a1rf"))))
1238 (build-system julia-build-system)
1239 (arguments
1240 `(#:tests? #f)) ;require CUDA, not packaged yet
1241 (propagated-inputs
1242 `(("julia-abstractffs" ,julia-abstractffts)
1243 ("julia-chainrules" ,julia-chainrules)
1244 ("julia-diffrules" ,julia-diffrules)
1245 ("julia-fillarrays" ,julia-fillarrays)
1246 ("julia-forwarddiff" ,julia-forwarddiff)
1247 ("julia-irtools" ,julia-irtools)
1248 ("julia-macrotools" ,julia-macrotools)
1249 ("julia-nanmath" ,julia-nanmath)
1250 ("julia-requires" ,julia-requires)
1251 ("julia-specialfunctions" ,julia-specialfunctions)
1252 ("julia-zygote-rules" ,julia-zygoterules)))
1253 (home-page "https://fluxml.ai/Zygote.jl")
1254 (synopsis "Automatic differentiation in Julia")
1255 (description "Zygote provides source-to-source automatic
1256differentiation (AD) in Julia, and is the next-generation AD system for the
1257Flux differentiable programming framework.")
1258 (license license:expat)))