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1 | ;;; GNU Guix --- Functional package management for GNU |
f7a98af0 |
2 | ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz> |
35044d3e |
3 | ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com> |
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4 | ;;; |
5 | ;;; This file is part of GNU Guix. |
6 | ;;; |
7 | ;;; GNU Guix is free software; you can redistribute it and/or modify it |
8 | ;;; under the terms of the GNU General Public License as published by |
9 | ;;; the Free Software Foundation; either version 3 of the License, or (at |
10 | ;;; your option) any later version. |
11 | ;;; |
12 | ;;; GNU Guix is distributed in the hope that it will be useful, but |
13 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of |
14 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
15 | ;;; GNU General Public License for more details. |
16 | ;;; |
17 | ;;; You should have received a copy of the GNU General Public License |
18 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. |
19 | |
20 | (define-module (gnu packages julia-xyz) |
21 | #:use-module ((guix licenses) #:prefix license:) |
22 | #:use-module (guix packages) |
23 | #:use-module (guix git-download) |
3291e4ba |
24 | #:use-module (guix build-system julia) |
4d69758f |
25 | #:use-module (gnu packages gcc) |
73052c70 |
26 | #:use-module (gnu packages maths) |
3291e4ba |
27 | #:use-module (gnu packages tls)) |
a1315b7f |
28 | |
651a5573 |
29 | (define-public julia-abstractffts |
30 | (package |
31 | (name "julia-abstractffts") |
32 | (version "1.0.1") |
33 | (source |
34 | (origin |
35 | (method git-fetch) |
36 | (uri (git-reference |
37 | (url "https://github.com/JuliaMath/AbstractFFTS.jl") |
38 | (commit (string-append "v" version)))) |
39 | (file-name (git-file-name name version)) |
40 | (sha256 |
41 | (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0")))) |
42 | (build-system julia-build-system) |
43 | (inputs ;required for tests |
44 | `(("julia-unitful" ,julia-unitful))) |
45 | (home-page "https://github.com/JuliaGPU/Adapt.jl") |
46 | (synopsis "General framework for fast Fourier transforms (FFTs)") |
47 | (description "This package allows multiple FFT packages to co-exist with |
48 | the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is |
49 | mainly not intended to be used directly. Instead, developers of packages that |
50 | implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the |
51 | types/functions defined in AbstractFFTs.") |
52 | (license license:expat))) |
53 | |
20767b9b |
54 | (define-public julia-adapt |
55 | (package |
56 | (name "julia-adapt") |
57 | (version "3.1.1") |
58 | (source |
59 | (origin |
60 | (method git-fetch) |
61 | (uri (git-reference |
62 | (url "https://github.com/JuliaGPU/Adapt.jl") |
63 | (commit (string-append "v" version)))) |
81d45a66 |
64 | (file-name (git-file-name name version)) |
20767b9b |
65 | (sha256 |
66 | (base32 "1lks6k3a1gvwlplld47nh6xfy3nnlpc0vhkzg6zg0qn33qdmavrg")))) |
67 | (build-system julia-build-system) |
68 | (home-page "https://github.com/JuliaGPU/Adapt.jl") |
69 | (synopsis "Package providing the @code{adapt} function, similar to @code{convert}") |
70 | (description "This Julia package provides the @code{adapt(T, x)} function |
71 | acts like @code{convert(T, x)}, but without the restriction of returning a |
72 | @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to |
73 | be GPU compatible without throwing away the wrapper.") |
74 | (license license:expat))) |
75 | |
03010d5d |
76 | (define-public julia-benchmarktools |
77 | (package |
78 | (name "julia-benchmarktools") |
79 | (version "0.5.0") |
80 | (source |
81 | (origin |
82 | (method git-fetch) |
83 | (uri (git-reference |
84 | (url "https://github.com/JuliaCI/BenchmarkTools.jl") |
85 | (commit (string-append "v" version)))) |
86 | (file-name (git-file-name name version)) |
87 | (sha256 |
88 | (base32 "0nsx21m3i5h22lkgyrmfj6r085va6ag40khwssqs8y7l0wz98lvp")))) |
89 | (build-system julia-build-system) |
90 | (propagated-inputs `(("julia-json" ,julia-json))) |
91 | (home-page "https://github.com/JuliaCI/BenchmarkTools.jl") |
92 | (synopsis "Benchmarking framework for the Julia language") |
93 | (description "@code{BenchmarkTools.jl} makes performance tracking of Julia |
94 | code easy by supplying a framework for writing and running groups of |
95 | benchmarks as well as comparing benchmark results.") |
96 | (license license:expat))) |
97 | |
52d09b1f |
98 | (define-public julia-bufferedstreams |
99 | (package |
100 | (name "julia-bufferedstreams") |
101 | (version "1.0.0") |
102 | (source |
103 | (origin |
104 | (method git-fetch) |
105 | (uri (git-reference |
106 | (url "https://github.com/BioJulia/BufferedStreams.jl") |
107 | (commit (string-append "v" version)))) |
108 | (file-name (git-file-name name version)) |
109 | (sha256 |
110 | (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z")))) |
111 | (build-system julia-build-system) |
112 | ;; The package is old and tests are using undefined functions. They also |
113 | ;; freeze, see |
114 | ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182 |
115 | (arguments |
116 | '(#:tests? #f |
117 | #:julia-package-name "BufferedStreams")) |
118 | (propagated-inputs `(("julia-compat" ,julia-compat))) |
119 | (home-page "https://github.com/BioJulia/BufferedStreams.jl") |
120 | (synopsis "Fast composable IO streams") |
121 | (description "@code{BufferedStreams.jl} provides buffering for IO |
122 | operations. It can wrap any @code{IO} type automatically making incremental |
123 | reading and writing faster.") |
124 | (license license:expat))) |
125 | |
b91ad832 |
126 | (define-public julia-calculus |
127 | (package |
128 | (name "julia-calculus") |
129 | (version "0.5.1") |
130 | (source |
131 | (origin |
132 | (method git-fetch) |
133 | (uri (git-reference |
134 | (url "https://github.com/JuliaMath/Calculus.jl") |
135 | (commit (string-append "v" version)))) |
136 | (file-name (git-file-name name version)) |
137 | (sha256 |
138 | (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2")))) |
139 | (build-system julia-build-system) |
140 | (home-page "https://github.com/JuliaMath/Calculus.jl") |
141 | (synopsis "Common utilities for automatic differentiation") |
142 | (description "This package provides tools for working with the basic |
143 | calculus operations of differentiation and integration. The @code{Calculus} |
144 | package produces approximate derivatives by several forms of finite |
145 | differencing or produces exact derivative using symbolic differentiation. It |
146 | can also be used to compute definite integrals by different numerical |
147 | methods.") |
148 | (license license:expat))) |
149 | |
bb1ca1f3 |
150 | (define-public julia-chainrulescore |
151 | (package |
152 | (name "julia-chainrulescore") |
153 | (version "0.9.29") |
154 | (source |
155 | (origin |
156 | (method git-fetch) |
157 | (uri (git-reference |
158 | (url "https://github.com/JuliaDiff/ChainRulesCore.jl") |
159 | (commit (string-append "v" version)))) |
160 | (file-name (git-file-name name version)) |
161 | (sha256 |
162 | (base32 "1k0iayw39n1ikkkhvyi4498vsnzc94skqs41gnd15632gxjfvki4")))) |
163 | (build-system julia-build-system) |
164 | (inputs ;required for tests |
165 | `(("julia-benchmarktools" ,julia-benchmarktools) |
166 | ("julia-staticarrays" ,julia-staticarrays))) |
167 | (propagated-inputs |
168 | `(("julia-compat" ,julia-compat))) |
169 | (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl") |
170 | (synopsis "Common utilities used by downstream automatic differentiation tools") |
171 | (description "The package provides a light-weight dependency for defining |
172 | sensitivities for functions without the need to depend on ChainRules itself.") |
173 | (license license:expat))) |
174 | |
9eb29396 |
175 | (define-public julia-chainrulestestutils |
176 | (package |
177 | (name "julia-chainrulestestutils") |
178 | (version "0.6.4") |
179 | (source |
180 | (origin |
181 | (method git-fetch) |
182 | (uri (git-reference |
183 | (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") |
184 | (commit (string-append "v" version)))) |
185 | (file-name (git-file-name name version)) |
186 | (sha256 |
187 | (base32 "1pzs947adnb3cx1qd0cxp2fidk9szz0zsqbas90z1lhydykkvkil")))) |
188 | (build-system julia-build-system) |
189 | (propagated-inputs |
190 | `(("julia-chainrulescore" ,julia-chainrulescore) |
191 | ("julia-compat" ,julia-compat) |
192 | ("julia-finitedifference" ,julia-finitedifferences))) |
193 | (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") |
194 | (synopsis "Common utilities used by downstream automatic differentiation tools") |
195 | (description "This package is designed to help in testing |
196 | @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main |
197 | entry points are @code{ChainRulesTestUtils.frule_test}, |
198 | @code{ChainRulesTestUtils.rrule_test}, and |
199 | @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the |
200 | rules against numerical differentiation (using @code{FiniteDifferences.jl}). |
201 | |
202 | @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it |
203 | can be a test-only dependency, allowing it to have potentially heavy |
204 | dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.") |
205 | (license license:expat))) |
206 | |
13a8b866 |
207 | (define-public julia-colors |
208 | (package |
209 | (name "julia-colors") |
210 | (version "0.12.6") |
211 | (source |
212 | (origin |
213 | (method git-fetch) |
214 | (uri (git-reference |
215 | (url "https://github.com/JuliaGraphics/Colors.jl") |
216 | (commit (string-append "v" version)))) |
217 | (file-name (git-file-name name version)) |
218 | (sha256 |
219 | (base32 "156zsszgwh6bmznsan0zyha6yvcxw3c5mvc5vr2qfsgxbyh36ln6")))) |
220 | (build-system julia-build-system) |
221 | (propagated-inputs |
222 | `(("julia-colortypes" ,julia-colortypes) |
223 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) |
224 | ("julia-reexport" ,julia-reexport))) |
225 | (home-page "https://github.com/JuliaGraphics/Colors.jl") |
226 | (synopsis "Tools for dealing with color") |
227 | (description "This package provides a wide array of functions for dealing |
228 | with color. This includes conversion between colorspaces, measuring distance |
229 | between colors, simulating color blindness, parsing colors, and generating |
230 | color scales for graphics.") |
231 | (license license:expat))) |
232 | |
9b8b132e |
233 | (define-public julia-colortypes |
234 | (package |
235 | (name "julia-colortypes") |
236 | (version "0.10.12") |
237 | (source |
238 | (origin |
239 | (method git-fetch) |
240 | (uri (git-reference |
241 | (url "https://github.com/JuliaGraphics/ColorTypes.jl") |
242 | (commit (string-append "v" version)))) |
243 | (file-name (git-file-name name version)) |
244 | (sha256 |
245 | (base32 "176hr3qbz7lncmykks2qaj3cqisnzim7wi5jwsca9ld26wwyvyqq")))) |
246 | (arguments |
247 | '(#:tests? #f)) ;require Documenter, not packaged yet |
248 | (build-system julia-build-system) |
249 | (propagated-inputs |
250 | `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) |
251 | (home-page "https://github.com/JuliaGraphics/ColorTypes.jl") |
252 | (synopsis "Basic color types and constructor") |
253 | (description "This minimalistic package serves as the foundation for |
254 | working with colors in Julia. It defines basic color types and their |
255 | constructors, and sets up traits and show methods to make them easier to work |
256 | with.") |
257 | (license license:expat))) |
258 | |
2ca38ee4 |
259 | (define-public julia-commonsubexpressions |
260 | (package |
261 | (name "julia-commonsubexpressions") |
262 | (version "0.3.0") |
263 | (source |
264 | (origin |
265 | (method git-fetch) |
266 | (uri (git-reference |
267 | (url "https://github.com/rdeits/CommonSubexpressions.jl") |
268 | (commit (string-append "v" version)))) |
269 | (file-name (git-file-name name version)) |
270 | (sha256 |
271 | (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay")))) |
272 | (build-system julia-build-system) |
273 | (propagated-inputs |
274 | `(("julia-macrotools" ,julia-macrotools))) |
275 | (home-page "https://github.com/rdeits/CommonSubexpressions.jl") |
276 | (synopsis "Macro @code{@cse}") |
277 | (description "This package provides the @code{@cse} macro, which performs |
278 | common subexpression elimination.") |
279 | (license license:expat))) |
280 | |
a1315b7f |
281 | (define-public julia-compat |
282 | (package |
283 | (name "julia-compat") |
f7a98af0 |
284 | (version "3.25.0") |
a1315b7f |
285 | (source |
286 | (origin |
287 | (method git-fetch) |
288 | (uri (git-reference |
289 | (url "https://github.com/JuliaLang/Compat.jl") |
290 | (commit (string-append "v" version)))) |
54721e7e |
291 | (file-name (git-file-name name version)) |
a1315b7f |
292 | (sha256 |
f7a98af0 |
293 | (base32 "1m4r5i8mq29xjp3mllh6047n5a78sdyld57m15anrnsjgaapcgby")))) |
a1315b7f |
294 | (build-system julia-build-system) |
295 | (home-page "https://github.com/JuliaLang/Compat.jl") |
296 | (synopsis "Compatibility across Julia versions") |
297 | (description "The Compat package is designed to ease interoperability |
298 | between older and newer versions of the Julia language. The Compat package |
299 | provides a macro that lets you use the latest syntax in a backwards-compatible |
300 | way.") |
301 | (license license:expat))) |
eccd448c |
302 | |
4d69758f |
303 | ;;; TODO: Remove this autogenerated source package |
304 | ;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/> |
305 | (define-public julia-compilersupportlibraries-jll |
306 | (package |
307 | (name "julia-compilersupportlibraries-jll") |
308 | (version "0.4.0+1") |
309 | (source |
310 | (origin |
311 | (method git-fetch) |
312 | (uri (git-reference |
313 | (url "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl") |
314 | (commit (string-append "CompilerSupportLibraries-v" version)))) |
315 | (file-name (git-file-name name version)) |
316 | (sha256 |
317 | (base32 "03j6xdvps259mhdzpjqf41l65w2l9sahvxg4wrp34hcf69wkrzpy")))) |
318 | (build-system julia-build-system) |
319 | (arguments |
320 | `(#:tests? #f ; no runtests.jl |
321 | #:phases |
322 | (modify-phases %standard-phases |
323 | (add-after 'unpack 'override-binary-path |
324 | (lambda* (#:key inputs #:allow-other-keys) |
325 | (map |
326 | (lambda (wrapper) |
327 | (substitute* wrapper |
328 | (("generate_wrapper_header.*") |
329 | (string-append |
330 | "generate_wrapper_header(\"CompilerSupportLibraries\", \"" |
331 | (assoc-ref inputs "gfortran:lib") "\")\n")))) |
332 | ;; There's a Julia file for each platform, override them all |
333 | (find-files "src/wrappers/" "\\.jl$")) |
334 | #t))))) |
335 | (inputs ;required by artifacts |
336 | `(("gfortran:lib" ,gfortran "lib"))) |
337 | (propagated-inputs |
338 | `(("julia-jllwrappers" ,julia-jllwrappers))) |
339 | (home-page "https://github.com/JuliaBinaryWrappers/CompilerSupportLibraries_jll.jl") |
340 | (synopsis "Internal wrappers") |
341 | (description "This package provides compiler support for libraries. It is |
342 | an autogenerated source package constructed using @code{BinaryBuilder.jl}. The |
343 | originating @code{build_tarballs.jl} script can be found on the community |
344 | build tree Yggdrasil.") |
345 | (license license:expat))) |
346 | |
35044d3e |
347 | (define-public julia-constructionbase |
348 | (let ((commit "de77e2865b554f9b078fd8c35b593cce0554ae02")) |
349 | (package |
350 | (name "julia-constructionbase") |
351 | (version "1.1.0") ;tag not created upstream |
352 | (source |
353 | (origin |
354 | (method git-fetch) |
355 | (uri (git-reference |
356 | (url "https://github.com/JuliaObjects/ConstructionBase.jl") |
357 | (commit commit))) |
358 | (file-name (git-file-name name version)) |
359 | (sha256 |
360 | (base32 "1y79sfj0rds1skl9j16p9161hwa9khm0xc2m4hgjcbh5zzvyr57v")))) |
361 | (build-system julia-build-system) |
362 | (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/") |
363 | (synopsis "Primitive functions for construction of objects") |
364 | (description "This very lightweight package provides primitive functions |
365 | for construction of objects.") |
366 | (license license:expat)))) |
367 | |
6545cef5 |
368 | (define-public julia-datastructures |
369 | (package |
370 | (name "julia-datastructures") |
371 | (version "0.18.9") |
372 | (source |
373 | (origin |
374 | (method git-fetch) |
375 | (uri (git-reference |
376 | (url "https://github.com/JuliaCollections/DataStructures.jl") |
377 | (commit (string-append "v" version)))) |
378 | (file-name (git-file-name name version)) |
379 | (sha256 |
380 | (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l")))) |
381 | (propagated-inputs |
382 | `(("julia-compat" ,julia-compat) |
383 | ("julia-orderedcollections" ,julia-orderedcollections))) |
384 | (build-system julia-build-system) |
385 | (home-page "https://github.com/JuliaCollections/DataStructures.jl") |
386 | (synopsis "Julia module providing different data structures") |
387 | (description "This package implements a variety of data structures, |
388 | including, @code{CircularBuffer}, @code{Queue}, @code{Stack}, |
389 | @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.") |
390 | (license license:expat))) |
391 | |
7bf791ee |
392 | (define-public julia-diffresults |
393 | (package |
394 | (name "julia-diffresults") |
395 | (version "1.0.3") |
396 | (source |
397 | (origin |
398 | (method git-fetch) |
399 | (uri (git-reference |
400 | (url "https://github.com/JuliaDiff/DiffResults.jl") |
401 | (commit (string-append "v" version)))) |
402 | (file-name (git-file-name name version)) |
403 | (sha256 |
404 | (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v")))) |
405 | (propagated-inputs |
406 | `(("julia-staticarrays" ,julia-staticarrays))) |
407 | (build-system julia-build-system) |
408 | (home-page "https://github.com/JuliaDiff/DiffResults.jl") |
409 | (synopsis "In-place differentiation methods of primal values at multi-order") |
410 | (description "This package provides the @code{DiffResult} type, which can |
411 | be passed to in-place differentiation methods instead of an output buffer.") |
412 | (license license:expat))) |
413 | |
33e5152a |
414 | (define-public julia-diffrules |
415 | (package |
416 | (name "julia-diffrules") |
417 | (version "1.0.2") |
418 | (source |
419 | (origin |
420 | (method git-fetch) |
421 | (uri (git-reference |
422 | (url "https://github.com/JuliaDiff/DiffRules.jl") |
423 | (commit (string-append "v" version)))) |
424 | (file-name (git-file-name name version)) |
425 | (sha256 |
426 | (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl")))) |
427 | (propagated-inputs |
428 | `(("julia-nanmath" ,julia-nanmath) |
429 | ("julia-specialfunctions" ,julia-specialfunctions))) |
430 | (build-system julia-build-system) |
431 | (home-page "https://github.com/JuliaDiff/DiffRules.jl") |
432 | (synopsis "Primitive differentiation rules") |
433 | (description "This package provides primitive differentiation rules that |
434 | can be composed via various formulations of the chain rule. Using |
435 | @code{DiffRules}, new differentiation rules can defined, query whether or not |
436 | a given rule exists, and symbolically apply rules to simple Julia expressions.") |
437 | (license license:expat))) |
438 | |
df4be2e9 |
439 | (define-public julia-difftests |
440 | (package |
441 | (name "julia-difftests") |
442 | (version "0.1.1") |
443 | (source |
444 | (origin |
445 | (method git-fetch) |
446 | (uri (git-reference |
447 | (url "https://github.com/JuliaDiff/DiffTests.jl") |
448 | (commit (string-append "v" version)))) |
449 | (file-name (git-file-name name version)) |
450 | (sha256 |
451 | (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57")))) |
452 | (build-system julia-build-system) |
453 | (home-page "https://github.com/JuliaDiff/DiffTests.jl") |
454 | (synopsis "Common test functions for differentiation tools") |
455 | (description "This package contains a common suite of test functions for |
456 | stressing the robustness of differentiation tools.") |
457 | (license license:expat))) |
458 | |
fffb1e72 |
459 | (define-public julia-example |
460 | (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388")) |
461 | (package |
462 | (name "julia-example") |
463 | (version "0.5.4") ;tag not created upstream |
464 | (source |
465 | (origin |
466 | (method git-fetch) |
467 | (uri (git-reference |
468 | (url "https://github.com/JuliaLang/Example.jl") |
469 | (commit commit))) |
470 | (file-name (git-file-name name version)) |
471 | (sha256 |
472 | (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx")))) |
473 | (build-system julia-build-system) |
474 | (home-page "https://github.com/JuliaLang/Example.jl") |
475 | (synopsis "Module providing examples") |
476 | (description "This package provides various examples.") |
477 | (license license:expat)))) |
478 | |
a0d3a73f |
479 | (define-public julia-fillarrays |
480 | (package |
481 | (name "julia-fillarrays") |
482 | (version "0.11.7") |
483 | (source |
484 | (origin |
485 | (method git-fetch) |
486 | (uri (git-reference |
487 | (url "https://github.com/JuliaArrays/FillArrays.jl") |
488 | (commit (string-append "v" version)))) |
489 | (file-name (git-file-name name version)) |
490 | (sha256 |
491 | (base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d")))) |
492 | (build-system julia-build-system) |
493 | (inputs ;required by tests |
494 | `(("julia-staticarrays" ,julia-staticarrays))) |
495 | (home-page "https://github.com/JuliaArrays/FillArrays.jl") |
496 | (synopsis "Lazy matrix representation") |
497 | (description "This package allows to lazily represent matrices filled with |
498 | a single entry, as well as identity matrices. This package exports the |
499 | following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros}, |
500 | @code{Trues} and @code{Falses}.") |
501 | (license license:expat))) |
502 | |
f6c5a898 |
503 | (define-public julia-finitedifferences |
504 | (package |
505 | (name "julia-finitedifferences") |
506 | (version "0.12.2") |
507 | (source |
508 | (origin |
509 | (method git-fetch) |
510 | (uri (git-reference |
511 | (url "https://github.com/JuliaDiff/FiniteDifferences.jl") |
512 | (commit (string-append "v" version)))) |
513 | (file-name (git-file-name name version)) |
514 | (sha256 |
515 | (base32 "0dcx34026xdpfmbjls3mrknl8ww62kxxfr77kfihbazsfg2gp5b4")))) |
516 | (build-system julia-build-system) |
517 | (inputs |
518 | `(("julia-benchmarktools" ,julia-benchmarktools))) |
519 | (propagated-inputs |
520 | `(("julia-chainrulescore" ,julia-chainrulescore) |
521 | ("julia-richardson" ,julia-richardson) |
522 | ("julia-staticarrays" ,julia-staticarrays))) |
523 | (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl") |
524 | (synopsis "Estimates derivatives with finite differences") |
525 | (description "This package calculates approximate derivatives numerically |
526 | using finite difference.") |
527 | (license license:expat))) |
528 | |
50f99cc5 |
529 | (define-public julia-fixedpointnumbers |
530 | (package |
531 | (name "julia-fixedpointnumbers") |
532 | (version "0.8.4") |
533 | (source |
534 | (origin |
535 | (method git-fetch) |
536 | (uri (git-reference |
537 | (url "https://github.com/JuliaMath/FixedPointNumbers.jl") |
538 | (commit (string-append "v" version)))) |
539 | (file-name (git-file-name name version)) |
540 | (sha256 |
541 | (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi")))) |
542 | (build-system julia-build-system) |
543 | (arguments |
544 | `(#:phases |
545 | (modify-phases %standard-phases |
546 | (add-after 'unpack 'disable-failing-test |
547 | (lambda* (#:key outputs #:allow-other-keys) |
548 | (substitute* "test/fixed.jl" |
549 | ;; A deprecation warning is not thrown |
550 | (("@test_logs.*:warn" all) (string-append "# " all))) |
551 | #t))))) |
552 | (propagated-inputs `(("julia-compat" ,julia-compat))) |
553 | (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl") |
554 | (synopsis "Fixed point types for Julia") |
555 | (description "@code{FixedPointNumbers.jl} implements fixed-point number |
556 | types for Julia. A fixed-point number represents a fractional, or |
557 | non-integral, number. In contrast with the more widely known floating-point |
558 | numbers, with fixed-point numbers the decimal point doesn't \"float\": |
559 | fixed-point numbers are effectively integers that are interpreted as being |
560 | scaled by a constant factor. Consequently, they have a fixed number of |
561 | digits (bits) after the decimal (radix) point.") |
562 | (license license:expat))) |
d4987a50 |
563 | |
564 | (define-public julia-http |
565 | (package |
566 | (name "julia-http") |
567 | (version "0.9.2") |
568 | (source |
569 | (origin |
570 | (method git-fetch) |
571 | (uri (git-reference |
572 | (url "https://github.com/JuliaWeb/HTTP.jl") |
573 | (commit (string-append "v" version)))) |
574 | (file-name (git-file-name name version)) |
575 | (sha256 |
576 | (base32 "0ij0yci13c46p92m4zywvcs02nn8pm0abyfffiyhxvva6hq48lyl")))) |
577 | (build-system julia-build-system) |
578 | (arguments |
579 | `(#:phases |
580 | (modify-phases %standard-phases |
581 | (add-before 'install 'disable-network-tests |
582 | (lambda _ |
583 | (substitute* "test/runtests.jl" |
584 | (("\"async.jl") "# \"async.jl") |
585 | (("\"client.jl") "# \"client.jl")) |
586 | (substitute* "test/aws4.jl" |
587 | (("@testset.*HTTP.request with AWS authentication.*" all) |
588 | (string-append all "return\n"))) |
589 | (substitute* "test/insert_layers.jl" |
590 | (("@testset.*Inserted final layer runs handler.*" all) |
591 | (string-append all "return\n"))) |
592 | (substitute* "test/multipart.jl" |
593 | (("@testset \"Setting of Content-Type.*" all) |
594 | (string-append all "return\n")) |
595 | (("@testset \"Deprecation of .*" all) |
596 | (string-append all "return\n"))) |
597 | (substitute* "test/websockets.jl" |
598 | (("@testset.*External Host.*" all) |
599 | (string-append all "return\n"))) |
600 | (substitute* "test/messages.jl" |
601 | (("@testset.*Read methods.*" all) |
602 | (string-append all "return\n")) |
603 | (("@testset.*Body - .*" all) |
604 | (string-append all "return\n")) |
605 | (("@testset.*Write to file.*" all) |
606 | (string-append all "return\n"))) |
607 | #t))))) |
608 | (propagated-inputs |
609 | `(("julia-inifile" ,julia-inifile) |
610 | ("julia-mbedtls" ,julia-mbedtls) |
611 | ("julia-uris" ,julia-uris))) |
612 | ;; required for tests |
613 | (inputs |
614 | `(("julia-json" ,julia-json) |
615 | ("julia-bufferedstreams" ,julia-bufferedstreams))) |
616 | (home-page "https://juliaweb.github.io/HTTP.jl/") |
617 | (synopsis "HTTP support for Julia") |
618 | (description "@code{HTTP.jl} is a Julia library for HTTP Messages, |
619 | implementing both a client and a server.") |
620 | (license license:expat))) |
50f99cc5 |
621 | |
fc781578 |
622 | (define-public julia-inifile |
623 | (package |
624 | (name "julia-inifile") |
625 | (version "0.5.0") |
626 | (source |
627 | (origin |
628 | (method git-fetch) |
629 | (uri (git-reference |
630 | (url "https://github.com/JuliaIO/IniFile.jl") |
631 | (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0"))) |
632 | (file-name (git-file-name name version)) |
633 | (sha256 |
634 | (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd")))) |
635 | (build-system julia-build-system) |
636 | (home-page "https://github.com/JuliaIO/IniFile.jl") |
637 | (synopsis "Reading Windows-style INI files") |
638 | (description "This is a Julia package that defines an IniFile type that |
639 | allows to interface with @file{.ini} files.") |
640 | (license license:expat))) |
641 | |
57653707 |
642 | (define-public julia-irtools |
643 | (package |
644 | (name "julia-irtools") |
645 | (version "0.4.2") |
646 | (source |
647 | (origin |
648 | (method git-fetch) |
649 | (uri (git-reference |
650 | (url "https://github.com/FluxML/IRTools.jl") |
651 | (commit (string-append "v" version)))) |
652 | (file-name (git-file-name name version)) |
653 | (sha256 |
654 | (base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y")))) |
655 | (arguments |
656 | '(#:tests? #f)) ;require Documenter, not packaged yet |
657 | (build-system julia-build-system) |
658 | (propagated-inputs |
659 | `(("julia-macrotools" ,julia-macrotools))) |
660 | (home-page "https://github.com/FluxML/IRTools.jl") |
661 | (synopsis "Simple and flexible IR format") |
662 | (description "This package provides a simple and flexible IR format, |
663 | expressive enough to work with both lowered and typed Julia code, as well as |
664 | external IRs. It can be used with Julia metaprogramming tools such as |
665 | Cassette.") |
666 | (license license:expat))) |
667 | |
a06db9c1 |
668 | (define-public julia-jllwrappers |
669 | (package |
670 | (name "julia-jllwrappers") |
671 | (version "1.2.0") |
672 | (source |
673 | (origin |
674 | (method git-fetch) |
675 | (uri (git-reference |
676 | (url "https://github.com/JuliaPackaging/JLLWrappers.jl") |
677 | (commit (string-append "v" version)))) |
678 | (file-name (git-file-name name version)) |
679 | (sha256 |
680 | (base32 "1sj3mi2dcc13apqfpy401wic5n0pgbck1p98b2g3zw0mln9s83m4")))) |
681 | (arguments |
682 | ;; Wants to download stuff |
683 | '(#:tests? #f |
684 | #:phases |
685 | (modify-phases %standard-phases |
686 | (add-after 'unpack 'custom-override-path |
687 | (lambda* (#:key inputs #:allow-other-keys) |
688 | ;; Make @generate_wrapper_header take an optional argument that |
689 | ;; guix packagers can pass to override the default "override" |
690 | ;; binary path. This won't be needed when something like |
691 | ;; https://github.com/JuliaPackaging/JLLWrappers.jl/pull/27 |
692 | ;; will be merged. |
693 | (substitute* "src/wrapper_generators.jl" |
694 | (("generate_wrapper_header.*") |
695 | "generate_wrapper_header(src_name, override_path = nothing)\n") |
696 | (("pkg_dir = .*" all) |
697 | (string-append |
698 | all "\n" "override = something(override_path," |
699 | "joinpath(dirname(pkg_dir), \"override\"))\n")) |
700 | (("@static if isdir.*") "@static if isdir($override)\n") |
701 | (("return joinpath.*") "return $override\n")) |
702 | #t))))) |
703 | (build-system julia-build-system) |
704 | (home-page "https://github.com/JuliaPackaging/JLLWrappers.jl") |
705 | (synopsis "Julia macros used by JLL packages") |
706 | (description "This package contains Julia macros that enable JLL packages |
707 | to generate themselves. It is not intended to be used by users, but rather is |
708 | used in autogenerated packages via @code{BinaryBuilder.jl}.") |
709 | (license license:expat))) |
710 | |
dae521a0 |
711 | (define-public julia-json |
712 | (package |
713 | (name "julia-json") |
714 | (version "0.21.1") |
715 | (source |
716 | (origin |
717 | (method git-fetch) |
718 | (uri (git-reference |
719 | (url "https://github.com/JuliaIO/JSON.jl") |
720 | (commit (string-append "v" version)))) |
721 | (file-name (git-file-name name version)) |
722 | (sha256 |
723 | (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m")))) |
724 | (build-system julia-build-system) |
725 | (propagated-inputs |
726 | `(("julia-datastructures" ,julia-datastructures) |
727 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) |
728 | ("julia-parsers" ,julia-parsers) |
729 | ("julia-offsetarrays" ,julia-offsetarrays))) |
730 | (home-page "https://github.com/JuliaIO/JSON.jl") |
731 | (synopsis "JSON parsing and printing library for Julia") |
732 | (description "@code{JSON.jl} is a pure Julia module which supports parsing |
733 | and printing JSON documents.") |
734 | (license license:expat))) |
735 | |
45debc7b |
736 | (define-public julia-macrotools |
737 | (package |
738 | (name "julia-macrotools") |
739 | (version "0.5.6") |
740 | (source |
741 | (origin |
742 | (method git-fetch) |
743 | (uri (git-reference |
744 | (url "https://github.com/FluxML/MacroTools.jl") |
745 | (commit (string-append "v" version)))) |
746 | (file-name (git-file-name name version)) |
747 | (sha256 |
748 | (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f")))) |
749 | (build-system julia-build-system) |
750 | (home-page "https://fluxml.ai/MacroTools.jl") |
751 | (synopsis "Tools for working with Julia code and expressions") |
752 | (description "This library provides tools for working with Julia code and |
753 | expressions. This includes a template-matching system and code-walking tools |
754 | that let you do deep transformations of code.") |
755 | (license license:expat))) |
756 | |
a72d3ca8 |
757 | (define-public julia-mbedtls |
758 | (package |
759 | (name "julia-mbedtls") |
760 | (version "1.0.3") |
761 | (source |
762 | (origin |
763 | (method git-fetch) |
764 | (uri (git-reference |
765 | (url "https://github.com/JuliaLang/MbedTLS.jl") |
766 | (commit (string-append "v" version)))) |
767 | (file-name (git-file-name name version)) |
768 | (sha256 |
769 | (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb")))) |
770 | (build-system julia-build-system) |
771 | (arguments |
772 | `(#:phases |
773 | (modify-phases %standard-phases |
774 | (add-before 'install 'disable-network-tests |
775 | ;; Tries to connect to httpbin.org |
776 | (lambda _ |
777 | (substitute* "test/runtests.jl" |
778 | (("testhost =") "return #")) |
779 | #t))))) |
780 | (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll))) |
781 | (home-page "https://github.com/JuliaLang/MbedTLS.jl") |
782 | (synopsis "Apache's mbed TLS library wrapper") |
783 | (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed |
784 | TLS} and cryptography C libary for Julia.") |
785 | (license license:expat))) |
786 | |
3291e4ba |
787 | (define-public julia-mbedtls-jll |
788 | (package |
789 | (name "julia-mbedtls-jll") |
790 | ;; version 2.25.0+0 is not compatible with current mbedtls 2.23.0, |
791 | ;; upgrade this when mbedtls is updated in guix |
792 | (version "2.24.0+1") |
793 | (source |
794 | (origin |
795 | (method git-fetch) |
796 | (uri (git-reference |
797 | (url "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl") |
798 | (commit (string-append "MbedTLS-v" version)))) |
799 | (file-name (git-file-name name version)) |
800 | (sha256 |
801 | (base32 "0kk9dlxdh7yms21npgrdfmjbj8q8ng6kdhrzw3jr2d7rp696kp99")))) |
802 | (build-system julia-build-system) |
803 | (arguments |
804 | '(#:tests? #f ; No runtests.jl |
805 | #:phases |
806 | (modify-phases %standard-phases |
807 | (add-after 'unpack 'override-binary-path |
808 | (lambda* (#:key inputs #:allow-other-keys) |
809 | (map |
810 | (lambda (wrapper) |
811 | (substitute* wrapper |
812 | (("generate_wrapper_header.*") |
813 | (string-append |
814 | "generate_wrapper_header(\"MbedTLS\", \"" |
815 | (assoc-ref inputs "mbedtls-apache") "\")\n")))) |
816 | ;; There's a Julia file for each platform, override them all |
817 | (find-files "src/wrappers/" "\\.jl$")) |
818 | #t))))) |
819 | (inputs `(("mbedtls-apache" ,mbedtls-apache))) |
820 | (propagated-inputs `(("julia-jllwrappers" ,julia-jllwrappers))) |
821 | (home-page "https://github.com/JuliaBinaryWrappers/MbedTLS_jll.jl") |
822 | (synopsis "Apache's mbed TLS binary wrappers") |
823 | (description "This Julia module provides @code{mbed TLS} libraries and |
824 | wrappers.") |
825 | (license license:expat))) |
826 | |
a5edd83d |
827 | (define-public julia-nanmath |
828 | (package |
829 | (name "julia-nanmath") |
830 | (version "0.3.5") |
831 | (source |
832 | (origin |
833 | (method git-fetch) |
834 | (uri (git-reference |
835 | (url "https://github.com/mlubin/NaNMath.jl") |
836 | (commit (string-append "v" version)))) |
837 | (file-name (git-file-name name version)) |
838 | (sha256 |
839 | (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q")))) |
840 | (build-system julia-build-system) |
841 | (home-page "https://github.com/mlubin/NaNMath.jl") |
842 | (synopsis "Implementations of basic math functions") |
843 | (description "Implementations of basic math functions which return |
844 | @code{NaN} instead of throwing a @code{DomainError}.") |
845 | (license license:expat))) |
846 | |
eccd448c |
847 | (define-public julia-orderedcollections |
848 | (package |
849 | (name "julia-orderedcollections") |
850 | (version "1.3.2") |
851 | (source |
852 | (origin |
853 | (method git-fetch) |
854 | (uri (git-reference |
855 | (url "https://github.com/JuliaCollections/OrderedCollections.jl") |
856 | (commit (string-append "v" version)))) |
857 | (file-name (git-file-name name version)) |
858 | (sha256 |
859 | (base32 "0sfip1ixghsz91q2s7d62rgzw3gppg42fg6bccxlplqa3hfmbycf")))) |
860 | (build-system julia-build-system) |
861 | (home-page "https://github.com/JuliaCollections/OrderedCollections.jl") |
862 | (synopsis "Associative containers that preserve insertion order") |
863 | (description "This package implements @code{OrderedDicts} and |
864 | @code{OrderedSets}, which are similar to containers in base Julia. However, |
865 | during iteration the @code{Ordered*} containers return items in the order in |
866 | which they were added to the collection.") |
867 | (license license:expat))) |
c0c21d77 |
868 | |
fb634a0e |
869 | (define-public julia-offsetarrays |
870 | (package |
871 | (name "julia-offsetarrays") |
872 | (version "1.5.2") |
873 | (source |
874 | (origin |
875 | (method git-fetch) |
876 | (uri (git-reference |
877 | (url "https://github.com/JuliaArrays/OffsetArrays.jl") |
878 | (commit (string-append "v" version)))) |
879 | (file-name (git-file-name name version)) |
880 | (sha256 |
881 | (base32 "1y3fnssw2hzyghrk6jfcxslab0f8sjkjszh482snfq4k6mkrhy77")))) |
882 | (build-system julia-build-system) |
883 | (propagated-inputs |
884 | `(("julia-adapt" ,julia-adapt))) |
885 | ;; CatIndices depends on OffsetArrays, introducing a recursive dependency |
886 | (arguments '(#:tests? #f)) |
887 | (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/") |
888 | (synopsis "Fortran-like arrays with arbitrary, zero or negative indices") |
889 | (description "@code{OffsetArrays.jl} provides Julia users with arrays that |
890 | have arbitrary indices, similar to those found in some other programming |
891 | languages like Fortran.") |
892 | (license license:expat))) |
893 | |
73052c70 |
894 | ;;; TODO: Remove this autogenerated source package |
895 | ;;; and build it from realse source using <https://github.com/JuliaPackaging/Yggdrasil/> |
896 | (define-public julia-openspecfun-jll |
897 | (let ((commit "6c505cce3bdcd9cd2b15b4f9362ec3a42c4da71c")) |
898 | (package |
899 | (name "julia-openspecfun-jll") |
900 | (version "0.5.3+4") ;tag not created upstream |
901 | (source |
902 | (origin |
903 | (method git-fetch) |
904 | (uri (git-reference |
905 | (url "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl") |
906 | (commit commit))) |
907 | (file-name (git-file-name name version)) |
908 | (sha256 |
909 | (base32 "0bl2gcgndsbiwhwy8fl070cjm1fyf9kxj6gkikgirmzgjl29iakn")))) |
910 | (build-system julia-build-system) |
911 | (arguments |
912 | `(#:tests? #f ; no runtests.jl |
913 | #:phases |
914 | (modify-phases %standard-phases |
915 | (add-after 'unpack 'override-binary-path |
916 | (lambda* (#:key inputs #:allow-other-keys) |
917 | (map |
918 | (lambda (wrapper) |
919 | (substitute* wrapper |
920 | (("generate_wrapper_header.*") |
921 | (string-append |
922 | "generate_wrapper_header(\"OpenSpecFun\", \"" |
923 | (assoc-ref inputs "openspecfun") "\")\n")))) |
924 | ;; There's a Julia file for each platform, override them all |
925 | (find-files "src/wrappers/" "\\.jl$")) |
926 | #t))))) |
927 | (inputs |
928 | `(("openspecfun" ,openspecfun))) |
929 | (propagated-inputs |
930 | `(("julia-jllwrappers" ,julia-jllwrappers) |
931 | ("julia-compilersupportlibraries-jll" ,julia-compilersupportlibraries-jll))) |
932 | (home-page "https://github.com/JuliaBinaryWrappers/OpenSpecFun_jll.jl") |
933 | (synopsis "Internal wrappers") |
934 | (description "This package provides a wrapper for OpenSpecFun. It is an |
935 | autogenerated source package constructed using @code{BinaryBuilder.jl}. The |
936 | originating @code{build_tarballs.jl} script can be found on the community |
937 | build tree Yggdrasil.") |
938 | (license license:expat)))) |
939 | |
c0c21d77 |
940 | (define-public julia-parsers |
941 | (package |
942 | (name "julia-parsers") |
943 | (version "1.0.15") |
944 | (source |
945 | (origin |
946 | (method git-fetch) |
947 | (uri (git-reference |
948 | (url "https://github.com/JuliaData/Parsers.jl") |
949 | (commit (string-append "v" version)))) |
950 | (file-name (git-file-name name version)) |
951 | (sha256 |
952 | (base32 "16iffl6l28kspgqch48mhi1s8qhspr3cpqcwsph3rqi72lbfqygx")))) |
953 | (build-system julia-build-system) |
954 | (home-page "https://github.com/JuliaData/Parsers.jl") |
955 | (synopsis "Fast parsing machinery for basic types in Julia") |
956 | (description "@code{Parsers.jl} is a collection of type parsers and |
957 | utilities for Julia.") |
958 | (license license:expat))) |
8f59a9fb |
959 | |
02543b52 |
960 | (define-public julia-reexport |
961 | (package |
962 | (name "julia-reexport") |
963 | (version "1.0.0") |
964 | (source |
965 | (origin |
966 | (method git-fetch) |
967 | (uri (git-reference |
968 | (url "https://github.com/simonster/Reexport.jl") |
969 | (commit version))) |
970 | (file-name (git-file-name name version)) |
971 | (sha256 |
972 | (base32 "1yhhja1zz6dy5f4fd19bdwd6jwgj7q4w3avzgyg1hjhmdl8jrh0s")))) |
973 | (build-system julia-build-system) |
974 | (home-page "https://github.com/simonster/Reexport.jl") |
975 | (synopsis "Re-export modules and symbols") |
976 | (description "This package provides tools to re-export modules and symbols.") |
977 | (license license:expat))) |
978 | |
658fca53 |
979 | (define-public julia-requires |
980 | (package |
981 | (name "julia-requires") |
982 | (version "1.1.3") |
983 | (source |
984 | (origin |
985 | (method git-fetch) |
986 | (uri (git-reference |
987 | (url "https://github.com/JuliaPackaging/Requires.jl/") |
988 | (commit (string-append "v" version)))) |
989 | (file-name (git-file-name name version)) |
990 | (sha256 |
991 | (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01")))) |
992 | (build-system julia-build-system) |
993 | (inputs ;required for test |
994 | `(("julia-example" ,julia-example))) |
995 | (propagated-inputs |
996 | `(("julia-colors" ,julia-colors))) |
997 | (home-page "https://github.com/JuliaPackaging/Requires.jl/") |
998 | (synopsis "Faster package loader") |
999 | (description "This package make loading packages faster, maybe. It |
1000 | supports specifying glue code in packages which will load automatically when |
1001 | another package is loaded, so that explicit dependencies (and long load times) |
1002 | can be avoided.") |
1003 | (license license:expat))) |
1004 | |
dd7a77c3 |
1005 | (define-public julia-richardson |
1006 | (package |
1007 | (name "julia-richardson") |
1008 | (version "1.4.0") |
1009 | (source |
1010 | (origin |
1011 | (method git-fetch) |
1012 | (uri (git-reference |
1013 | (url "https://github.com/JuliaMath/Richardson.jl") |
1014 | (commit (string-append "v" version)))) |
1015 | (file-name (git-file-name name version)) |
1016 | (sha256 |
1017 | (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx")))) |
1018 | (build-system julia-build-system) |
1019 | (home-page "https://juliapackages.com/p/richardson") |
1020 | (synopsis "Extrapolate function using Richardson method") |
1021 | (description "This package provides a function extrapolate that |
1022 | extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f} |
1023 | only at a geometric sequence of points @code{> x0} (or optionally @code{< |
1024 | x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken |
1025 | tableau, which adaptively increases the degree of an extrapolation polynomial |
1026 | until convergence is achieved to a desired tolerance (or convergence stalls |
1027 | due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to |
1028 | high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some |
1029 | other power series in @code{h}.") |
1030 | (license license:expat))) |
1031 | |
3d98a16a |
1032 | (define-public julia-specialfunctions |
1033 | (package |
1034 | (name "julia-specialfunctions") |
1035 | (version "1.3.0") |
1036 | (source |
1037 | (origin |
1038 | (method git-fetch) |
1039 | (uri (git-reference |
1040 | (url "https://github.com/JuliaMath/SpecialFunctions.jl") |
1041 | (commit (string-append "v" version)))) |
1042 | (file-name (git-file-name name version)) |
1043 | (sha256 |
1044 | (base32 "1rfhrrkzi3ils7fklbn35ki1yp5x88fi71qknfwqyw4pk8cf8p80")))) |
1045 | (build-system julia-build-system) |
1046 | (inputs |
1047 | `(("julia-chainrulestestutils" ,julia-chainrulestestutils))) |
1048 | (propagated-inputs |
1049 | `(("julia-chainrulescore" ,julia-chainrulescore) |
1050 | ("julia-openspecfun-jll" ,julia-openspecfun-jll))) |
1051 | (home-page "https://github.com/JuliaMath/SpecialFunctions.jl") |
1052 | (synopsis "Special mathematical functions") |
1053 | (description "This package provides special mathematical functions, |
1054 | including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and |
1055 | cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and |
1056 | polygamma functions.") |
1057 | (license license:expat))) |
1058 | |
be802277 |
1059 | (define-public julia-staticarrays |
1060 | (package |
1061 | (name "julia-staticarrays") |
1062 | (version "1.0.1") |
1063 | (source |
1064 | (origin |
1065 | (method git-fetch) |
1066 | (uri (git-reference |
1067 | (url "https://github.com/JuliaArrays/StaticArrays.jl") |
1068 | (commit (string-append "v" version)))) |
1069 | (file-name (git-file-name name version)) |
1070 | (sha256 |
1071 | (base32 "01z8bcqwpfkp8p1h1r36pr5cc3798y76zkas7g3206pcsdhvlkz1")))) |
1072 | (build-system julia-build-system) |
1073 | (inputs |
1074 | `(("julia-benchmarktools" ,julia-benchmarktools))) |
1075 | (home-page "https://github.com/JuliaArrays/StaticArrays.jl") |
1076 | (synopsis "Statically sized arrays") |
1077 | (description "This package provides a framework for implementing |
1078 | statically sized arrays in Julia, using the abstract type |
1079 | @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of |
1080 | @code{StaticArray} will provide fast implementations of common array and |
1081 | linear algebra operations.") |
1082 | (license license:expat))) |
1083 | |
8f59a9fb |
1084 | (define-public julia-uris |
1085 | (package |
1086 | (name "julia-uris") |
1087 | (version "1.2.0") |
1088 | (source |
1089 | (origin |
1090 | (method git-fetch) |
1091 | (uri (git-reference |
1092 | (url "https://github.com/JuliaWeb/URIs.jl") |
1093 | (commit (string-append "v" version)))) |
1094 | (file-name (git-file-name name version)) |
1095 | (sha256 |
1096 | (base32 "0fqyagsqks5za7m0czafr34m2xh5501f689k9cn5x3npajdnh2r3")))) |
1097 | (build-system julia-build-system) |
1098 | (arguments |
1099 | '(#:julia-package-name "URIs" ;required to run tests |
1100 | #:phases |
1101 | (modify-phases %standard-phases |
1102 | (add-before 'check 'change-dir |
1103 | ;; Tests must be run from the testdir |
1104 | (lambda* (#:key source outputs #:allow-other-keys) |
1105 | (let ((out (assoc-ref outputs "out"))) |
1106 | (chdir |
1107 | (string-append out "/share/julia/packages/URIs/test"))) |
1108 | #t))))) |
1109 | ;; required for tests |
1110 | (inputs `(("julia-json" ,julia-json))) |
1111 | (home-page "https://github.com/JuliaWeb/URIs.jl") |
1112 | (synopsis "URI parsing in Julia") |
1113 | (description "@code{URIs.jl} is a Julia package that allows parsing and |
1114 | working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC |
1115 | 3986.") |
1116 | (license license:expat))) |
a8e3be6a |
1117 | |
1118 | (define-public julia-unitful |
1119 | (package |
1120 | (name "julia-unitful") |
1121 | (version "1.6.0") |
1122 | (source |
1123 | (origin |
1124 | (method git-fetch) |
1125 | (uri (git-reference |
1126 | (url "https://github.com/PainterQubits/Unitful.jl") |
1127 | (commit (string-append "v" version)))) |
1128 | (file-name (git-file-name name version)) |
1129 | (sha256 |
1130 | (base32 "0g5bhlvay9yk11c5dqwbzmb3q7lzj0cq5zchyk39d59fkvvmxvq3")))) |
1131 | (build-system julia-build-system) |
1132 | (propagated-inputs |
1133 | `(("julia-constructionbase" ,julia-constructionbase))) |
1134 | (home-page "https://painterqubits.github.io/Unitful.jl/stable/") |
1135 | (synopsis "Physical units in Julia") |
1136 | (description "This package supports SI units and also many other unit |
1137 | system.") |
1138 | (license license:expat))) |