Commit | Line | Data |
---|---|---|
233e7676 | 1 | ;;; GNU Guix --- Functional package management for GNU |
3f074a21 | 2 | ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Andreas Enge <andreas@enge.fr> |
4b0bf990 | 3 | ;;; Copyright © 2013, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org> |
a733253b | 4 | ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> |
69d5909e | 5 | ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org> |
67f39dd5 | 6 | ;;; Copyright © 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> |
ecc5bc33 | 7 | ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> |
5144e314 | 8 | ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> |
f71f29ca | 9 | ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> |
eb6785cf | 10 | ;;; Copyright © 2017, 2019 Eric Bavier <bavier@member.fsf.org> |
4c877704 | 11 | ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> |
7cc9e1dc | 12 | ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> |
feba2c97 | 13 | ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> |
2ed139c4 | 14 | ;;; |
233e7676 | 15 | ;;; This file is part of GNU Guix. |
2ed139c4 | 16 | ;;; |
233e7676 | 17 | ;;; GNU Guix is free software; you can redistribute it and/or modify it |
2ed139c4 AE |
18 | ;;; under the terms of the GNU General Public License as published by |
19 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
20 | ;;; your option) any later version. | |
21 | ;;; | |
233e7676 | 22 | ;;; GNU Guix is distributed in the hope that it will be useful, but |
2ed139c4 AE |
23 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of |
24 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
25 | ;;; GNU General Public License for more details. | |
26 | ;;; | |
27 | ;;; You should have received a copy of the GNU General Public License | |
233e7676 | 28 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. |
2ed139c4 | 29 | |
1ffa7090 | 30 | (define-module (gnu packages algebra) |
59a43334 | 31 | #:use-module (gnu packages) |
14e6520e | 32 | #:use-module (gnu packages autotools) |
fdb513a7 | 33 | #:use-module (gnu packages bison) |
70770b93 | 34 | #:use-module (gnu packages check) |
10b1f688 | 35 | #:use-module (gnu packages compression) |
70770b93 | 36 | #:use-module (gnu packages cpp) |
99828fa7 | 37 | #:use-module (gnu packages documentation) |
f71f29ca | 38 | #:use-module (gnu packages ed) |
5894b604 | 39 | #:use-module (gnu packages flex) |
57497c57 NG |
40 | #:use-module (gnu packages fltk) |
41 | #:use-module (gnu packages gl) | |
aae03c48 | 42 | #:use-module (gnu packages graphviz) |
57497c57 | 43 | #:use-module (gnu packages image) |
c8d99608 | 44 | #:use-module (gnu packages java) |
aae03c48 | 45 | #:use-module (gnu packages maths) |
0fc54d4b | 46 | #:use-module (gnu packages mpi) |
5894b604 | 47 | #:use-module (gnu packages multiprecision) |
1ffa7090 | 48 | #:use-module (gnu packages perl) |
4bf9cb40 | 49 | #:use-module (gnu packages pkg-config) |
6d3896b9 | 50 | #:use-module (gnu packages pulseaudio) |
aae03c48 | 51 | #:use-module (gnu packages python) |
1d6589db | 52 | #:use-module (gnu packages python-xyz) |
5894b604 | 53 | #:use-module (gnu packages readline) |
b7194849 | 54 | #:use-module (gnu packages shells) |
8f9ac901 | 55 | #:use-module (gnu packages tex) |
f71f29ca | 56 | #:use-module (gnu packages texinfo) |
57497c57 | 57 | #:use-module (gnu packages xiph) |
fb8d1be8 | 58 | #:use-module (gnu packages xorg) |
c8d99608 | 59 | #:use-module (guix build-system ant) |
7569c5cb | 60 | #:use-module (guix build-system gnu) |
8f4b1dfb | 61 | #:use-module (guix build-system cmake) |
1d6589db | 62 | #:use-module (guix build-system python) |
5894b604 | 63 | #:use-module (guix download) |
c8d99608 | 64 | #:use-module (guix git-download) |
697eb65d | 65 | #:use-module (guix hg-download) |
5894b604 TGR |
66 | #:use-module ((guix licenses) #:prefix license:) |
67 | #:use-module (guix packages) | |
7569c5cb | 68 | #:use-module (guix utils)) |
2ed139c4 AE |
69 | |
70 | ||
71 | (define-public mpfrcx | |
72 | (package | |
73 | (name "mpfrcx") | |
43a776e2 | 74 | (version "0.5") |
2ed139c4 AE |
75 | (source (origin |
76 | (method url-fetch) | |
77 | (uri (string-append | |
43a776e2 | 78 | "http://www.multiprecision.org/downloads/mpfrcx-" |
2ed139c4 AE |
79 | version ".tar.gz")) |
80 | (sha256 | |
81 | (base32 | |
43a776e2 | 82 | "1s968480ymv6w0rnvfp9mxvx98hvi29fkvw8nk4ggzc6azxgwybs")))) |
2ed139c4 | 83 | (build-system gnu-build-system) |
878c8f3f AE |
84 | (propagated-inputs |
85 | `(("gmp" ,gmp) | |
86 | ("mpfr" ,mpfr) | |
87 | ("mpc" ,mpc))) ; Header files are included by mpfrcx.h. | |
35b9e423 | 88 | (synopsis "Arithmetic of polynomials over arbitrary precision numbers") |
2ed139c4 | 89 | (description |
35b9e423 | 90 | "Mpfrcx is a library for the arithmetic of univariate polynomials over |
2ed139c4 | 91 | arbitrary precision real (mpfr) or complex (mpc) numbers, without control |
35b9e423 | 92 | on the rounding. For the time being, only the few functions needed to |
2ed139c4 | 93 | implement the floating point approach to complex multiplication are |
35b9e423 | 94 | implemented. On the other hand, these comprise asymptotically fast |
e881752c | 95 | multiplication routines such as Toom–Cook and the FFT.") |
43a776e2 | 96 | (license license:lgpl3+) |
79d1550f | 97 | (home-page "http://www.multiprecision.org/mpfrcx/"))) |
2ed139c4 | 98 | |
7c5f6231 AE |
99 | (define-public gf2x |
100 | (package | |
101 | (name "gf2x") | |
102 | (version "1.2") | |
103 | (source (origin | |
104 | (method url-fetch) | |
105 | (uri (string-append | |
106 | "https://gforge.inria.fr/frs/download.php/file/36934/gf2x-" | |
107 | version ".tar.gz")) | |
108 | (sha256 | |
109 | (base32 | |
110 | "0d6vh1mxskvv3bxl6byp7gxxw3zzpkldrxnyajhnl05m0gx7yhk1")))) | |
111 | (build-system gnu-build-system) | |
112 | (synopsis "Arithmetic of polynomials over binary finite fields") | |
113 | (description | |
114 | "The gf2x library provides arithmetic of polynomials over finite fields | |
115 | of characteristic 2. It implements the multiplication, squaring and | |
116 | greatest common divisor operations.") | |
117 | (license license:gpl3+) | |
118 | (home-page "https://gforge.inria.fr/projects/gf2x/"))) | |
119 | ||
10b1f688 AE |
120 | (define-public cm |
121 | (package | |
122 | (name "cm") | |
81b55bf7 | 123 | (version "0.3") |
10b1f688 AE |
124 | (source (origin |
125 | (method url-fetch) | |
126 | (uri (string-append | |
127 | "http://www.multiprecision.org/cm/download/cm-" | |
128 | version ".tar.gz")) | |
129 | (sha256 | |
130 | (base32 | |
81b55bf7 | 131 | "1nf5kr0nqmhbzrsrinky18z0ighjpsmb5cr8zyg8jf04bfbyrfmc")))) |
10b1f688 AE |
132 | (build-system gnu-build-system) |
133 | (propagated-inputs | |
134 | `(("mpfrcx" ,mpfrcx) | |
135 | ("zlib" ,zlib))) ; Header files included from cm_common.h. | |
136 | (inputs | |
137 | `(("pari-gp" ,pari-gp))) | |
138 | (synopsis "CM constructions for elliptic curves") | |
139 | (description | |
140 | "The CM software implements the construction of ring class fields of | |
141 | imaginary quadratic number fields and of elliptic curves with complex | |
142 | multiplication via floating point approximations. It consists of libraries | |
143 | that can be called from within a C program and of executable command | |
144 | line applications.") | |
81b55bf7 | 145 | (license license:gpl3+) |
79d1550f | 146 | (home-page "http://www.multiprecision.org/cm/"))) |
10b1f688 | 147 | |
2ed139c4 AE |
148 | (define-public fplll |
149 | (package | |
1de48e8f NG |
150 | (name "fplll") |
151 | (version "5.2.1") | |
152 | (source (origin | |
153 | (method git-fetch) | |
154 | (uri (git-reference | |
155 | (url "https://github.com/fplll/fplll.git") | |
156 | (commit version))) | |
157 | (file-name (git-file-name name version)) | |
158 | (sha256 | |
159 | (base32 | |
160 | "015qmrd7nfaysbv1hbwiprz9g6hnww1y1z1xw8f43ysb7k1b5nbg")))) | |
161 | (build-system gnu-build-system) | |
162 | (native-inputs | |
163 | `(("autoconf" ,autoconf) | |
164 | ("automake" ,automake) | |
165 | ("libtool" ,libtool))) | |
166 | (inputs | |
167 | `(("gmp" ,gmp) | |
168 | ("mpfr" ,mpfr))) | |
169 | (home-page "https://github.com/fplll/fplll") | |
170 | (synopsis "Library for LLL-reduction of euclidean lattices") | |
171 | (description | |
172 | "fplll contains implementations of several lattice algorithms. | |
173 | The implementation relies on floating-point orthogonalization, and LLL | |
174 | is central to the code, hence the name. | |
175 | ||
176 | It includes implementations of floating-point LLL reduction | |
177 | algorithms, offering different speed/guarantees ratios. It contains | |
178 | a @emph{wrapper} choosing the estimated best sequence of variants in | |
179 | order to provide a guaranteed output as fast as possible. In the case | |
180 | of the wrapper, the succession of variants is oblivious to the user. | |
181 | ||
182 | It includes an implementation of the BKZ reduction algorithm, | |
183 | including the BKZ-2.0 improvements (extreme enumeration | |
184 | pruning, pre-processing of blocks, early termination). Additionally, | |
185 | Slide reduction and self dual BKZ are supported. | |
186 | ||
187 | It also includes a floating-point implementation of the | |
188 | Kannan-Fincke-Pohst algorithm that finds a shortest non-zero lattice | |
189 | vector. For the same task, the GaussSieve algorithm is also available | |
190 | in fplll. Finally, it contains a variant of the enumeration algorithm | |
191 | that computes a lattice vector closest to a given vector belonging to | |
192 | the real span of the lattice.") | |
193 | (license license:lgpl2.1+))) | |
4e6b699d | 194 | |
25cbaa9e NG |
195 | (define-public python-fpylll |
196 | (package | |
197 | (name "python-fpylll") | |
198 | (version "0.4.1") | |
199 | (source | |
200 | (origin | |
201 | ;; Pypi contains and older release, so we use a tagged release from | |
202 | ;; Github instead. | |
203 | (method git-fetch) | |
204 | (uri (git-reference | |
205 | (url "https://github.com/fplll/fpylll.git") | |
206 | (commit (string-append version "dev")))) | |
f1d4d79f | 207 | (file-name (git-file-name name version)) |
25cbaa9e NG |
208 | (sha256 |
209 | (base32 | |
210 | "01x2sqdv0sbjj4g4waj0hj4rcn4bq7h17442xaqwbznym9azmn9w")))) | |
211 | (build-system python-build-system) | |
212 | (inputs | |
213 | `(("fplll" ,fplll) | |
214 | ("gmp" ,gmp) | |
215 | ("mpfr" ,mpfr) | |
216 | ("pari-gp" ,pari-gp))) | |
217 | (propagated-inputs | |
218 | `(("cysignals" ,python-cysignals) | |
219 | ("cython" ,python-cython) | |
220 | ("flake8" ,python-flake8) | |
221 | ("numpy" ,python-numpy) | |
222 | ("pytest" ,python-pytest))) | |
223 | (home-page "https://github.com/fplll/fpylll") | |
224 | (synopsis "Python interface for fplll") | |
225 | (description "fpylll is a Python wrapper for fplll.") | |
226 | (license license:gpl2+))) | |
227 | ||
90a6d47c AE |
228 | (define-public pari-gp |
229 | (package | |
67f39dd5 | 230 | (name "pari-gp") |
f916ac12 | 231 | (version "2.11.4") |
67f39dd5 RW |
232 | (source (origin |
233 | (method url-fetch) | |
234 | (uri (string-append | |
235 | "https://pari.math.u-bordeaux.fr/pub/pari/unix/pari-" | |
236 | version ".tar.gz")) | |
237 | (sha256 | |
238 | (base32 | |
f916ac12 | 239 | "070bjw4kg7r6lqs1hfs08n5fmjv90cpwflp3wr04hbrmyz28zj5z")))) |
67f39dd5 RW |
240 | (build-system gnu-build-system) |
241 | (native-inputs | |
242 | `(("texlive" ,(texlive-union | |
f75aa97f | 243 | (list texlive-amsfonts))))) |
67f39dd5 RW |
244 | (inputs `(("gmp" ,gmp) |
245 | ("libx11" ,libx11) | |
246 | ("perl" ,perl) | |
247 | ("readline" ,readline))) | |
248 | (arguments | |
249 | '(#:make-flags '("all") | |
250 | #:test-target "dobench" | |
251 | #:phases | |
252 | (modify-phases %standard-phases | |
253 | (replace 'configure | |
254 | (lambda* (#:key outputs #:allow-other-keys) | |
255 | (invoke "./Configure" | |
256 | (string-append "--prefix=" | |
257 | (assoc-ref outputs "out")))))))) | |
258 | (synopsis "PARI/GP, a computer algebra system for number theory") | |
259 | (description | |
260 | "PARI/GP is a widely used computer algebra system designed for fast | |
90a6d47c AE |
261 | computations in number theory (factorisations, algebraic number theory, |
262 | elliptic curves...), but it also contains a large number of other useful | |
263 | functions to compute with mathematical entities such as matrices, | |
264 | polynomials, power series, algebraic numbers, etc., and a lot of | |
265 | transcendental functions. | |
266 | PARI is also available as a C library to allow for faster computations.") | |
67f39dd5 RW |
267 | (license license:gpl2+) |
268 | (home-page "https://pari.math.u-bordeaux.fr/"))) | |
ed9f9a77 | 269 | |
f854a8c1 AE |
270 | (define-public gp2c |
271 | (package | |
272 | (name "gp2c") | |
11abc24a | 273 | (version "0.0.11pl3") |
f854a8c1 AE |
274 | (source (origin |
275 | (method url-fetch) | |
276 | (uri (string-append | |
eeb8b0e6 | 277 | "https://pari.math.u-bordeaux.fr/pub/pari/GP2C/gp2c-" |
f854a8c1 | 278 | version ".tar.gz")) |
324bdcd8 AE |
279 | (sha256 |
280 | (base32 | |
11abc24a | 281 | "0yymbrgyjw500hqgmkj5m4nmscd7c9rs9w2c96lxgrcyab8krhrm")))) |
f854a8c1 | 282 | (build-system gnu-build-system) |
c67ccedd | 283 | (native-inputs `(("perl" ,perl))) |
f854a8c1 AE |
284 | (inputs `(("pari-gp" ,pari-gp))) |
285 | (arguments | |
286 | '(#:configure-flags | |
287 | (list (string-append "--with-paricfg=" | |
288 | (assoc-ref %build-inputs "pari-gp") | |
289 | "/lib/pari/pari.cfg")))) | |
290 | (synopsis "PARI/GP, a computer algebra system for number theory") | |
291 | (description | |
292 | "PARI/GP is a widely used computer algebra system designed for fast | |
293 | computations in number theory (factorisations, algebraic number theory, | |
294 | elliptic curves...), but it also contains a large number of other useful | |
295 | functions to compute with mathematical entities such as matrices, | |
296 | polynomials, power series, algebraic numbers, etc., and a lot of | |
297 | transcendental functions. | |
298 | PARI is also available as a C library to allow for faster computations. | |
299 | ||
300 | GP2C, the GP to C compiler, translates GP scripts to PARI programs.") | |
9f51293c | 301 | (license license:gpl2) |
eeb8b0e6 | 302 | (home-page "https://pari.math.u-bordeaux.fr/"))) |
f854a8c1 | 303 | |
ddfb6280 TGR |
304 | (define fplll-4-cmh |
305 | (package | |
306 | (inherit fplll) | |
307 | (name "fplll") | |
308 | (version "4.0.4") | |
309 | (source | |
310 | (origin | |
311 | (method url-fetch) | |
312 | (uri (string-append | |
313 | "http://perso.ens-lyon.fr/damien.stehle/fplll/libfplll-" | |
314 | version ".tar.gz")) | |
315 | (sha256 | |
316 | (base32 "1cbiby7ykis4z84swclpysrljmqhfcllpkcbll1m08rzskgb1a6b")))))) | |
317 | ||
eea7cd75 AE |
318 | (define-public cmh |
319 | (package | |
320 | (name "cmh") | |
321 | (version "1.0") | |
322 | (source (origin | |
323 | (method url-fetch) | |
324 | (uri (string-append | |
325 | "https://gforge.inria.fr/frs/download.php/33497/cmh-" | |
326 | version ".tar.gz")) | |
327 | (sha256 | |
328 | (base32 | |
329 | "1a28xr9bs0igms0ik99x0w8lnb0jyfcmvyi26pbyh9ggcdivd33p")))) | |
330 | (build-system gnu-build-system) | |
331 | (inputs | |
332 | `(("gmp" ,gmp) | |
333 | ("mpfr" ,mpfr) | |
334 | ("mpc" ,mpc) | |
335 | ("mpfrcx" ,mpfrcx) | |
ddfb6280 | 336 | ("fplll" ,fplll-4-cmh) |
eea7cd75 AE |
337 | ("pari-gp" ,pari-gp))) |
338 | (synopsis "Igusa class polynomial computations") | |
339 | (description | |
340 | "The CMH software computes Igusa (genus 2) class polynomials, which | |
341 | parameterize the CM points in the moduli space of 2-dimensional abelian | |
342 | varieties, i.e. Jacobians of hyperelliptic curves. | |
343 | It can also be used to compute theta constants at arbitrary | |
344 | precision.") | |
345 | (license license:gpl3+) | |
346 | (home-page "http://cmh.gforge.inria.fr/"))) | |
347 | ||
7fc0e3db | 348 | (define-public giac |
57497c57 | 349 | (package |
7fc0e3db | 350 | (name "giac") |
a733253b NG |
351 | (version "1.5.0-87") |
352 | (source | |
353 | (origin | |
354 | (method url-fetch) | |
355 | ;; "~parisse/giac" is not used because the maintainer regularly | |
356 | ;; overwrites the release tarball there, introducing a checksum | |
357 | ;; mismatch every time. See | |
358 | ;; <https://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/README> | |
359 | (uri (string-append "https://www-fourier.ujf-grenoble.fr/" | |
360 | "~parisse/debian/dists/stable/main/source/" | |
361 | "giac_" version ".tar.gz")) | |
362 | (sha256 | |
363 | (base32 "1d0h1yb7qvh9x7wwv9yrzmcp712f49w1iljkxp4y6g9pzsmg1mmv")))) | |
57497c57 NG |
364 | (build-system gnu-build-system) |
365 | (arguments | |
af90cc45 NG |
366 | `(#:modules ((ice-9 ftw) |
367 | (guix build utils) | |
368 | (guix build gnu-build-system)) | |
369 | #:phases | |
57497c57 NG |
370 | (modify-phases %standard-phases |
371 | (add-after 'unpack 'patch-bin-cp | |
90d5ec55 | 372 | ;; Some Makefiles contain hard-coded "/bin/cp". |
57497c57 | 373 | (lambda _ |
57497c57 NG |
374 | (substitute* (find-files "doc" "^Makefile") |
375 | (("/bin/cp") (which "cp"))) | |
90d5ec55 NG |
376 | #t)) |
377 | (add-after 'unpack 'disable-failing-test | |
378 | ;; FIXME: Test failing. Not sure why. | |
379 | (lambda _ | |
380 | (substitute* "check/Makefile.in" | |
381 | (("chk_fhan11") "")) | |
af90cc45 | 382 | #t)) |
9f73ac24 | 383 | (add-after 'install 'fix-doc |
af90cc45 | 384 | (lambda* (#:key outputs #:allow-other-keys) |
9f73ac24 NG |
385 | (let ((out (assoc-ref outputs "out"))) |
386 | ;; Most French documentation has a non-commercial | |
387 | ;; license, so we need to remove it. | |
388 | (with-directory-excursion (string-append out "/share/giac/doc/fr") | |
389 | (for-each delete-file-recursively | |
390 | '("cascas" "casexo" "casgeo" "casrouge" "cassim" | |
391 | "castor"))) | |
392 | ;; Remove duplicate documentation in | |
393 | ;; "%out/share/doc/giac/", where Xcas does not expect | |
394 | ;; to find it. | |
395 | (delete-file-recursively (string-append out "/share/doc/giac")) | |
396 | #t))) | |
397 | (add-after 'install 'remove-unnecessary-executable | |
398 | (lambda* (#:key outputs #:allow-other-keys) | |
399 | (let ((out (assoc-ref outputs "out"))) | |
400 | (delete-file (string-append out "/bin/xcasnew")) | |
401 | #t)))))) | |
57497c57 | 402 | (inputs |
6d3896b9 | 403 | ;;; TODO: Add libnauty. |
57497c57 | 404 | `(("fltk" ,fltk) |
6d3896b9 | 405 | ("glpk" ,glpk) |
57497c57 NG |
406 | ("gmp" ,gmp) |
407 | ("gsl" ,gsl) | |
408 | ("lapack" ,lapack) | |
409 | ("libao" ,ao) | |
410 | ("libjpeg" ,libjpeg) | |
411 | ("libpng" ,libpng) | |
6d3896b9 | 412 | ("libsamplerate" ,libsamplerate) |
57497c57 | 413 | ("libx11" ,libx11) |
99a00446 | 414 | ("libxinerama" ,libxinerama) |
57497c57 NG |
415 | ("libxft" ,libxft) |
416 | ("libxt" ,libxt) | |
417 | ("mesa" ,mesa) | |
418 | ("mpfi" ,mpfi) | |
419 | ("mpfr" ,mpfr) | |
420 | ("ntl" ,ntl) | |
421 | ("perl" ,perl) | |
422 | ("pari-gp" ,pari-gp) | |
9f73ac24 NG |
423 | ("tcsh" ,tcsh))) |
424 | (native-inputs | |
6d3896b9 NG |
425 | `(("bison" ,bison) |
426 | ("flex" ,flex) | |
427 | ("readline" ,readline) | |
a023ec6e | 428 | ("texlive" ,texlive-tiny))) |
57497c57 NG |
429 | (home-page "https://www-fourier.ujf-grenoble.fr/~parisse/giac.html") |
430 | (synopsis "Computer algebra system") | |
431 | (description | |
432 | "Giac/Xcas is a computer algebra system. It has a compatibility mode for | |
433 | maple, mupad and the TI89. It is available as a standalone program (graphic | |
434 | or text interfaces) or as a C++ library.") | |
435 | (license license:gpl3+))) | |
436 | ||
d7ab698a AE |
437 | (define-public flint |
438 | (package | |
439 | (name "flint") | |
6c591c8e | 440 | (version "2.5.2") |
d7ab698a AE |
441 | (source (origin |
442 | (method url-fetch) | |
443 | (uri (string-append | |
444 | "http://flintlib.org/flint-" | |
445 | version ".tar.gz")) | |
446 | (sha256 (base32 | |
6c591c8e | 447 | "11syazv1a8rrnac3wj3hnyhhflpqcmq02q8pqk2m6g2k6h0gxwfb")) |
fc1adab1 | 448 | (patches (search-patches "flint-ldconfig.patch")))) |
d7ab698a | 449 | (build-system gnu-build-system) |
df15d17d | 450 | (propagated-inputs |
d7ab698a | 451 | `(("gmp" ,gmp) |
df15d17d | 452 | ("mpfr" ,mpfr))) ; header files from both are included by flint/arith.h |
d7ab698a | 453 | (arguments |
ad11974e AE |
454 | `(#:parallel-tests? #f ; seems to be necessary on arm |
455 | #:phases | |
91430de6 AE |
456 | (modify-phases %standard-phases |
457 | (replace 'configure | |
458 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
459 | (let ((out (assoc-ref outputs "out")) | |
460 | (gmp (assoc-ref inputs "gmp")) | |
461 | (mpfr (assoc-ref inputs "mpfr"))) | |
91430de6 AE |
462 | ;; do not pass "--enable-fast-install", which makes the |
463 | ;; homebrew configure process fail | |
50233d95 | 464 | (invoke "./configure" |
91430de6 AE |
465 | (string-append "--prefix=" out) |
466 | (string-append "--with-gmp=" gmp) | |
50233d95 RW |
467 | (string-append "--with-mpfr=" mpfr)) |
468 | #t)))))) | |
d7ab698a AE |
469 | (synopsis "Fast library for number theory") |
470 | (description | |
471 | "FLINT is a C library for number theory. It supports arithmetic | |
472 | with numbers, polynomials, power series and matrices over many base | |
473 | rings, including multiprecision integers and rationals, integers | |
474 | modulo n, p-adic numbers, finite fields (prime and non-prime order) | |
475 | and real and complex numbers (via the Arb extension library). | |
476 | ||
477 | Operations that can be performed include conversions, arithmetic, | |
478 | GCDs, factoring, solving linear systems, and evaluating special | |
479 | functions. In addition, FLINT provides various low-level routines for | |
480 | fast arithmetic.") | |
9f51293c | 481 | (license license:gpl2+) |
d7ab698a AE |
482 | (home-page "http://flintlib.org/"))) |
483 | ||
6b8e8285 AE |
484 | (define-public arb |
485 | (package | |
6aa54e23 | 486 | (name "arb") |
faefa2ed | 487 | (version "2.17.0") |
6aa54e23 RW |
488 | (source (origin |
489 | (method git-fetch) | |
490 | (uri (git-reference | |
491 | (url "https://github.com/fredrik-johansson/arb.git") | |
492 | (commit version))) | |
493 | (file-name (git-file-name name version)) | |
494 | (sha256 | |
495 | (base32 | |
faefa2ed | 496 | "05lpy3hkl5f8ik19aw40cqydrb932xaf2n8hbq9ib5dnk7f010p1")))) |
6aa54e23 RW |
497 | (build-system gnu-build-system) |
498 | (propagated-inputs | |
499 | `(("flint" ,flint))) ; flint.h is included by arf.h | |
500 | (inputs | |
501 | `(("gmp" ,gmp) | |
502 | ("mpfr" ,mpfr))) | |
503 | (arguments | |
504 | `(#:phases | |
505 | (modify-phases %standard-phases | |
506 | (replace 'configure | |
507 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
508 | (let ((out (assoc-ref outputs "out")) | |
509 | (flint (assoc-ref inputs "flint")) | |
510 | (gmp (assoc-ref inputs "gmp")) | |
511 | (mpfr (assoc-ref inputs "mpfr"))) | |
faefa2ed TGR |
512 | ;; Do not pass "--enable-fast-install", which makes the |
513 | ;; homebrew configure process fail. | |
6aa54e23 RW |
514 | (invoke "./configure" |
515 | (string-append "--prefix=" out) | |
516 | (string-append "--with-flint=" flint) | |
517 | (string-append "--with-gmp=" gmp) | |
518 | (string-append "--with-mpfr=" mpfr)))))))) | |
519 | (synopsis "Arbitrary precision floating-point ball arithmetic") | |
520 | (description | |
521 | "Arb is a C library for arbitrary-precision floating-point ball | |
6b8e8285 AE |
522 | arithmetic. It supports efficient high-precision computation with |
523 | polynomials, power series, matrices and special functions over the | |
524 | real and complex numbers, with automatic, rigorous error control.") | |
6aa54e23 | 525 | (license license:lgpl2.1+) |
faefa2ed | 526 | (home-page "http://arblib.org"))) |
6b8e8285 | 527 | |
1d6589db AE |
528 | (define-public python-flint |
529 | (package | |
530 | (name "python-flint") | |
531 | (version "0.3.0") | |
532 | (source (origin | |
533 | (method git-fetch) | |
534 | (uri (git-reference | |
535 | (url "https://github.com/fredrik-johansson/python-flint.git") | |
536 | (commit version))) | |
537 | (file-name (git-file-name name version)) | |
538 | (sha256 | |
539 | (base32 | |
540 | "1v0anazbj1cfi68nl2j6dbd31kgkc1563xmr0zk5xk3xj78569pw")) | |
541 | (patches (search-patches "python-flint-includes.patch")))) | |
542 | (build-system python-build-system) | |
543 | (native-inputs | |
544 | `(("python-cython" ,python-cython))) | |
545 | (propagated-inputs | |
546 | `(("python-numpy" ,python-numpy))) | |
547 | (inputs | |
548 | `(("arb" ,arb) | |
549 | ("flint" ,flint))) | |
550 | (synopsis "Python module wrapping ARB and FLINT") | |
551 | (description | |
552 | "Python-flint is a Python extension module wrapping FLINT | |
553 | (Fast Library for Number Theory) and Arb (arbitrary-precision ball | |
554 | arithmetic). It supports integers, rationals, modular integers, | |
555 | real and complex ball arithmetic, polynomials and matrices over all | |
556 | these types and other mathematical functions.") | |
557 | (license license:expat) | |
558 | (home-page "http://fredrikj.net/python-flint/"))) | |
559 | ||
14e6520e AE |
560 | (define-public ntl |
561 | (package | |
562 | (name "ntl") | |
d96ad7fa | 563 | (version "11.4.3") |
14e6520e AE |
564 | (source (origin |
565 | (method url-fetch) | |
d96ad7fa | 566 | (uri (string-append "https://shoup.net/ntl/ntl-" |
14e6520e | 567 | version ".tar.gz")) |
d96ad7fa JK |
568 | (sha256 |
569 | (base32 | |
570 | "1lisp3064rch3jaa2wrhy1s9kll7i3ka3d0y6lj6l3l4ckfcrhdp")) | |
571 | (modules '((guix build utils))) | |
572 | (snippet | |
573 | '(begin | |
574 | (delete-file-recursively "src/libtool-origin") | |
575 | #t)))) | |
14e6520e AE |
576 | (build-system gnu-build-system) |
577 | (native-inputs | |
578 | `(("libtool" ,libtool) | |
579 | ("perl" ,perl))) ; for configuration | |
14e6520e | 580 | (inputs |
d96ad7fa JK |
581 | `(("gmp" ,gmp) |
582 | ("gf2x" ,gf2x))) | |
14e6520e AE |
583 | (arguments |
584 | `(#:phases | |
585 | (modify-phases %standard-phases | |
586 | (replace 'configure | |
d96ad7fa | 587 | (lambda* (#:key inputs outputs #:allow-other-keys) |
14e6520e | 588 | (chdir "src") |
d96ad7fa | 589 | (invoke "./configure" |
14e6520e | 590 | (string-append "PREFIX=" (assoc-ref outputs "out")) |
d96ad7fa JK |
591 | (string-append "LIBTOOL=" (assoc-ref inputs "libtool") "/bin/libtool") |
592 | ;; set the library prefixes explicitly so that they get | |
593 | ;; embedded in the .la file | |
594 | (string-append "GMP_PREFIX=" (assoc-ref inputs "gmp")) | |
595 | (string-append "GF2X_PREFIX=" (assoc-ref inputs "gf2x")) | |
14e6520e AE |
596 | ;; Do not build especially for the build machine. |
597 | "NATIVE=off" | |
d96ad7fa JK |
598 | "NTL_GF2X_LIB=on" |
599 | "SHARED=on")))))) | |
14e6520e AE |
600 | (synopsis "C++ library for number theory") |
601 | (description | |
602 | "NTL is a C++ library providing data structures and algorithms | |
603 | for manipulating signed, arbitrary length integers, and for vectors, | |
604 | matrices, and polynomials over the integers and over finite fields.") | |
605 | (license license:gpl2+) | |
d96ad7fa | 606 | (home-page "https://shoup.net/ntl/"))) |
14e6520e | 607 | |
aae03c48 AE |
608 | (define-public singular |
609 | (package | |
610 | (name "singular") | |
ff6807dc | 611 | (version "4.1.2p1") |
f35c3bbb KK |
612 | (source |
613 | (origin | |
614 | (method url-fetch) | |
615 | (uri | |
616 | (string-append "http://www.mathematik.uni-kl.de/ftp/pub/Math/" | |
617 | "Singular/SOURCES/" | |
618 | (string-join | |
619 | (string-split | |
620 | (string-trim-right version #\p | |
621 | 0 (1- (string-length version))) | |
622 | #\.) "-") | |
623 | "/singular-" version ".tar.gz")) | |
624 | (sha256 (base32 | |
ff6807dc | 625 | "0kvd55353fiqyq1msmi0kka66n5h0aqs7m3km60r01b1w2f8085m")))) |
aae03c48 AE |
626 | (build-system gnu-build-system) |
627 | (native-inputs | |
628 | `(("doxygen" ,doxygen) | |
629 | ("graphviz" ,graphviz) | |
630 | ("perl" ,perl))) | |
631 | (inputs | |
632 | `(("cddlib" ,cddlib) | |
633 | ("gmp" ,gmp) | |
634 | ("flint" ,flint) | |
635 | ("mpfr" ,mpfr) | |
636 | ("ntl" ,ntl) | |
637 | ("python" ,python-2) | |
638 | ("readline" ,readline))) | |
639 | (arguments | |
640 | `(#:configure-flags | |
641 | (list (string-append "--with-ntl=" | |
642 | (assoc-ref %build-inputs "ntl"))))) | |
643 | (synopsis "Computer algebra system for polynomial computations") | |
644 | (description | |
645 | "Singular is a computer algebra system for polynomial computations, | |
646 | with special emphasis on commutative and non-commutative algebra, algebraic | |
647 | geometry and singularity theory.") | |
648 | ;; Singular itself is dual licensed gpl2 or gpl3, but some of the | |
649 | ;; libraries with which it links are licensed under lgpl3+, so the | |
650 | ;; combined work becomes gpl3. See COPYING in the source code. | |
651 | (license license:gpl3) | |
652 | (home-page "http://www.singular.uni-kl.de/index.php"))) | |
653 | ||
57c9c349 AE |
654 | (define-public gmp-ecm |
655 | (package | |
656 | (name "gmp-ecm") | |
7d15cf17 | 657 | (version "7.0.4") |
57c9c349 | 658 | (source (origin |
7d15cf17 TGR |
659 | (method url-fetch) |
660 | ;; Use the ‘Latest version’ link for a stable URI across releases. | |
661 | (uri (string-append "https://gforge.inria.fr/frs/download.php/" | |
662 | "latestfile/160/ecm-" version ".tar.gz")) | |
663 | (sha256 (base32 | |
664 | "0hxs24c2m3mh0nq1zz63z3sb7dhy1rilg2s1igwwcb26x3pb7xqc")))) | |
57c9c349 AE |
665 | (build-system gnu-build-system) |
666 | (inputs | |
667 | `(("gmp" ,gmp))) | |
668 | (arguments | |
669 | `(#:configure-flags '("--enable-shared" | |
670 | ;; Disable specific assembly routines, which depend | |
671 | ;; on the subarchitecture of the build machine, | |
672 | ;; and use gmp instead. | |
673 | "--disable-asm-redc"))) | |
674 | (synopsis "Integer factorization library using the elliptic curve method") | |
675 | (description | |
676 | "GMP-ECM factors integers using the elliptic curve method (ECM) as well | |
677 | as the P-1 and P+1 algorithms. It provides a library and a stand-alone | |
678 | binary.") | |
679 | ;; Most files are under lgpl3+, but some are under gpl3+ or gpl2+, | |
680 | ;; so the combined work is under gpl3+. | |
681 | (license license:gpl3+) | |
682 | (home-page "http://ecm.gforge.inria.fr/"))) | |
683 | ||
ed9f9a77 LC |
684 | (define-public bc |
685 | (package | |
686 | (name "bc") | |
f71f29ca | 687 | (version "1.07.1") |
ed9f9a77 LC |
688 | (source (origin |
689 | (method url-fetch) | |
690 | (uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz")) | |
691 | (sha256 | |
692 | (base32 | |
f71f29ca | 693 | "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2")))) |
ed9f9a77 | 694 | (build-system gnu-build-system) |
f71f29ca MB |
695 | (native-inputs |
696 | `(("ed" ,ed) | |
697 | ("flex" ,flex) | |
698 | ("texinfo" ,texinfo))) | |
ed9f9a77 | 699 | (arguments |
f71f29ca | 700 | '(#:configure-flags |
f0bacad6 | 701 | (list "--with-readline"))) |
6fd52309 | 702 | (home-page "https://www.gnu.org/software/bc/") |
f50d2669 | 703 | (synopsis "Arbitrary precision numeric processing language") |
ed9f9a77 | 704 | (description |
a22dc0c4 LC |
705 | "bc is an arbitrary precision numeric processing language. It includes |
706 | an interactive environment for evaluating mathematical statements. Its | |
707 | syntax is similar to that of C, so basic usage is familiar. It also includes | |
708 | \"dc\", a reverse-polish calculator.") | |
9f51293c | 709 | (license license:gpl2+))) |
37e6cdcd | 710 | |
2a9b10c7 RW |
711 | ;; The original kiss-fft does not have a complete build system and does not |
712 | ;; build any shared libraries. This is a fork used by Extempore. | |
713 | (define-public kiss-fft-for-extempore | |
714 | (package | |
715 | (name "kiss-fft-for-extempore") | |
716 | (version "1.3.0") | |
717 | (source (origin | |
9774fac4 RW |
718 | (method git-fetch) |
719 | (uri (git-reference | |
720 | (url "https://github.com/extemporelang/kiss_fft.git") | |
721 | (commit version))) | |
722 | (file-name (git-file-name name version)) | |
2a9b10c7 RW |
723 | (sha256 |
724 | (base32 | |
9774fac4 | 725 | "0jasbmqy4wkqrqx3w64s1dfmj34875xmsl72mb26aa4hpyn14bi2")))) |
2a9b10c7 RW |
726 | (build-system cmake-build-system) |
727 | (arguments `(#:tests? #f)) ; no tests included | |
39162ee4 RW |
728 | ;; Extempore refuses to build on architectures other than x86_64 |
729 | (supported-systems '("x86_64-linux")) | |
2a9b10c7 RW |
730 | (home-page "https://github.com/extemporelang/kiss_fft") |
731 | (synopsis "Mixed-radix Fast Fourier Transform") | |
732 | (description | |
733 | "Kiss FFT attempts to be a reasonably efficient, moderately useful FFT | |
734 | that can use fixed or floating data types and can easily be incorporated into | |
735 | a C program.") | |
736 | (license license:bsd-3))) | |
737 | ||
37e6cdcd LC |
738 | (define-public fftw |
739 | (package | |
740 | (name "fftw") | |
bdb74478 | 741 | (version "3.3.8") |
37e6cdcd LC |
742 | (source (origin |
743 | (method url-fetch) | |
744 | (uri (string-append "ftp://ftp.fftw.org/pub/fftw/fftw-" | |
745 | version".tar.gz")) | |
746 | (sha256 | |
747 | (base32 | |
bdb74478 | 748 | "00z3k8fq561wq2khssqg0kallk0504dzlx989x3vvicjdqpjc4v1")))) |
37e6cdcd LC |
749 | (build-system gnu-build-system) |
750 | (arguments | |
65bb2279 | 751 | `(#:configure-flags |
69d5909e MW |
752 | '("--enable-shared" "--enable-openmp" "--enable-threads" |
753 | ,@(let ((system (or (%current-target-system) (%current-system)))) | |
754 | ;; Enable SIMD extensions for codelets. See details at: | |
755 | ;; <http://fftw.org/fftw3_doc/Installation-on-Unix.html>. | |
756 | (cond | |
757 | ((string-prefix? "x86_64" system) | |
758 | '("--enable-sse2" "--enable-avx" "--enable-avx2" | |
759 | "--enable-avx512" "--enable-avx-128-fma")) | |
760 | ((string-prefix? "i686" system) | |
761 | '("--enable-sse2")) | |
762 | ((string-prefix? "aarch64" system) | |
763 | ;; Note that fftw supports NEON on 32-bit ARM only when | |
764 | ;; compiled for single-precision. | |
765 | '("--enable-neon")) | |
766 | (else | |
767 | '()))) | |
65bb2279 EB |
768 | ;; By default '-mtune=native' is used. However, that may cause the |
769 | ;; use of ISA extensions (e.g. AVX) that are not necessarily | |
770 | ;; available on the user's machine when that package is built on a | |
771 | ;; different machine. | |
772 | "ax_cv_c_flags__mtune_native=no"))) | |
37e6cdcd LC |
773 | (native-inputs `(("perl" ,perl))) |
774 | (home-page "http://fftw.org") | |
775 | (synopsis "Computing the discrete Fourier transform") | |
776 | (description | |
777 | "FFTW is a C subroutine library for computing the discrete Fourier | |
778 | transform (DFT) in one or more dimensions, of arbitrary input size, and of | |
779 | both real and complex data (as well as of even/odd data---i.e. the discrete | |
780 | cosine/ sine transforms or DCT/DST).") | |
9f51293c | 781 | (license license:gpl2+))) |
7569c5cb EB |
782 | |
783 | (define-public fftwf | |
784 | (package (inherit fftw) | |
785 | (name "fftwf") | |
786 | (arguments | |
787 | (substitute-keyword-arguments (package-arguments fftw) | |
69d5909e MW |
788 | ((#:configure-flags fftw-configure-flags) |
789 | `(cons* "--enable-single" | |
790 | ,@(if (string-prefix? "arm" (or (%current-target-system) | |
791 | (%current-system))) | |
792 | ;; fftw supports NEON on 32-bit ARM only when compiled | |
793 | ;; for single-precision, so add it here. | |
794 | '("--enable-neon") | |
795 | '()) | |
796 | ,fftw-configure-flags)))) | |
7569c5cb EB |
797 | (description |
798 | (string-append (package-description fftw) | |
799 | " Single-precision version.")))) | |
e5c66f8c EB |
800 | |
801 | (define-public fftw-openmpi | |
802 | (package (inherit fftw) | |
803 | (name "fftw-openmpi") | |
804 | (inputs | |
805 | `(("openmpi" ,openmpi) | |
806 | ,@(package-inputs fftw))) | |
807 | (arguments | |
808 | (substitute-keyword-arguments (package-arguments fftw) | |
809 | ((#:configure-flags cf) | |
eb6785cf EB |
810 | `(cons "--enable-mpi" ,cf)) |
811 | ((#:phases phases '%standard-phases) | |
812 | `(modify-phases ,phases | |
813 | (add-before 'check 'mpi-setup | |
814 | ,%openmpi-setup))))) | |
e5c66f8c EB |
815 | (description |
816 | (string-append (package-description fftw) | |
817 | " With OpenMPI parallelism support.")))) | |
8f4b1dfb | 818 | |
c8d99608 RW |
819 | (define-public java-la4j |
820 | (package | |
821 | (name "java-la4j") | |
822 | (version "0.6.0") | |
823 | (source (origin | |
824 | (method git-fetch) | |
825 | (uri (git-reference | |
826 | (url "https://github.com/vkostyukov/la4j.git") | |
827 | (commit version))) | |
828 | (file-name (string-append name "-" version "-checkout")) | |
829 | (sha256 | |
830 | (base32 | |
831 | "1qir8dr978cfvz9k12m2kbdwpyf6cqdf1d0ilb7lnkhbgq5i53w3")))) | |
832 | (build-system ant-build-system) | |
833 | (arguments | |
834 | `(#:jar-name "la4j.jar" | |
835 | #:jdk ,icedtea-8 | |
836 | #:test-exclude (list "**/Abstract*.java" | |
837 | "**/MatrixTest.java" | |
838 | "**/DenseMatrixTest.java" | |
839 | "**/SparseMatrixTest.java" | |
840 | "**/VectorTest.java" | |
841 | "**/SparseVectorTest.java" | |
842 | "**/DenseVectorTest.java"))) | |
843 | (native-inputs | |
844 | `(("java-junit" ,java-junit) | |
845 | ("java-hamcrest-core" ,java-hamcrest-core))) | |
846 | (home-page "http://la4j.org/") | |
847 | (synopsis "Java library that provides Linear Algebra primitives and algorithms") | |
848 | (description "The la4j library is a Java library that provides Linear | |
849 | Algebra primitives (matrices and vectors) and algorithms. The key features of | |
850 | the la4j library are: | |
851 | ||
852 | @itemize | |
853 | @item No dependencies and tiny size | |
854 | @item Fluent object-oriented/functional API | |
855 | @item Sparse (CRS, CCS) and dense (1D/2D arrays) matrices | |
856 | @item Linear systems solving (Gaussian, Jacobi, Zeidel, Square Root, Sweep and other) | |
857 | @item Matrices decomposition (Eigenvalues/Eigenvectors, SVD, QR, LU, Cholesky and other) | |
858 | @item MatrixMarket/CSV IO formats support for matrices and vectors | |
859 | @end itemize\n") | |
860 | (license license:asl2.0))) | |
861 | ||
24074b0b RW |
862 | (define-public java-jlargearrays |
863 | (package | |
864 | (name "java-jlargearrays") | |
865 | (version "1.6") | |
866 | (source (origin | |
867 | (method url-fetch) | |
9f5eeb87 BH |
868 | (uri (string-append "https://repo1.maven.org/maven2/" |
869 | "pl/edu/icm/JLargeArrays/" | |
24074b0b RW |
870 | version "/JLargeArrays-" version |
871 | "-sources.jar")) | |
872 | (file-name (string-append name "-" version ".jar")) | |
873 | (sha256 | |
874 | (base32 | |
875 | "0v05iphpxbjnd7f4jf1rlqq3m8hslhcm0imdbsgxr20pi3xkaf2a")))) | |
876 | (build-system ant-build-system) | |
877 | (arguments | |
878 | `(#:jar-name "jlargearrays.jar" | |
879 | #:tests? #f ; tests are not included in the release archive | |
880 | #:jdk ,icedtea-8)) | |
881 | (propagated-inputs | |
882 | `(("java-commons-math3" ,java-commons-math3))) | |
883 | (home-page "https://gitlab.com/ICM-VisLab/JLargeArrays") | |
884 | (synopsis "Library of one-dimensional arrays that can store up to 263 elements") | |
885 | (description "JLargeArrays is a Java library of one-dimensional arrays | |
886 | that can store up to 263 elements.") | |
887 | (license license:bsd-2))) | |
888 | ||
4e92911c RW |
889 | (define-public java-jtransforms |
890 | (package | |
891 | (name "java-jtransforms") | |
892 | (version "3.1") | |
893 | (source (origin | |
894 | (method url-fetch) | |
4c877704 BH |
895 | (uri (string-append "https://repo1.maven.org/maven2/" |
896 | "com/github/wendykierp/JTransforms/" | |
4e92911c RW |
897 | version "/JTransforms-" version "-sources.jar")) |
898 | (sha256 | |
899 | (base32 | |
900 | "1haw5m8shv5srgcpwkl853dz8bv6h90bzlhcps6mdpb4cixjirsg")))) | |
901 | (build-system ant-build-system) | |
902 | (arguments | |
903 | `(#:jar-name "jtransforms.jar" | |
904 | #:tests? #f ; tests are not included in the release archive | |
905 | #:jdk ,icedtea-8)) | |
906 | (propagated-inputs | |
907 | `(("java-commons-math3" ,java-commons-math3) | |
908 | ("java-jlargearrays" ,java-jlargearrays))) | |
909 | (home-page "https://github.com/wendykierp/JTransforms") | |
910 | (synopsis "Multithreaded FFT library written in pure Java") | |
911 | (description "JTransforms is a multithreaded FFT library written in pure | |
912 | Java. Currently, four types of transforms are available: @dfn{Discrete | |
913 | Fourier Transform} (DFT), @dfn{Discrete Cosine Transform} (DCT), @dfn{Discrete | |
914 | Sine Transform} (DST) and @dfn{Discrete Hartley Transform} (DHT).") | |
915 | (license license:bsd-2))) | |
916 | ||
feba2c97 VL |
917 | (define-public lmfit |
918 | (package | |
919 | (name "lmfit") | |
920 | (version "8.2.2") | |
921 | (source (origin | |
922 | (method git-fetch) | |
923 | (uri (git-reference | |
924 | (url "https://jugit.fz-juelich.de/mlz/lmfit.git") | |
925 | (commit (string-append "v" version)))) | |
926 | (file-name (git-file-name name version)) | |
927 | (sha256 | |
928 | (base32 | |
929 | "00bch77a6qgnw6vzsjn2a42n8n683ih3xm0wpr454jxa15hw78vf")))) | |
930 | (build-system cmake-build-system) | |
931 | (native-inputs | |
932 | `(("perl" ,perl))) ; for pod2man | |
933 | (home-page "https://jugit.fz-juelich.de/mlz/lmfit") | |
934 | (synopsis "Levenberg-Marquardt minimization and least-squares fitting") | |
935 | (description "lmfit is a C library for Levenberg-Marquardt least-squares | |
936 | minimization and curve fitting. It is mature code, based on decades-old | |
937 | algorithms from the FORTRAN library MINPACK.") | |
938 | (license license:bsd-2))) | |
939 | ||
8f4b1dfb LC |
940 | (define-public eigen |
941 | (package | |
942 | (name "eigen") | |
5144e314 | 943 | (version "3.3.7") |
8f4b1dfb LC |
944 | (source (origin |
945 | (method url-fetch) | |
946 | (uri (string-append "https://bitbucket.org/eigen/eigen/get/" | |
9b268f12 | 947 | version ".tar.bz2")) |
8f4b1dfb LC |
948 | (sha256 |
949 | (base32 | |
5144e314 | 950 | "1km3fyfzyqfdvmnl79drps3fjwnz3zbh0c7l34mfbqyvvs8cy4wz")) |
2abcc935 | 951 | (file-name (string-append name "-" version ".tar.bz2")) |
5144e314 | 952 | (patches (search-patches "eigen-stabilise-sparseqr-test.patch")) |
8f4b1dfb LC |
953 | (modules '((guix build utils))) |
954 | (snippet | |
955 | ;; There are 3 test failures in the "unsupported" directory, | |
956 | ;; but maintainers say it's a known issue and it's unsupported | |
957 | ;; anyway, so just skip them. | |
1137d85b | 958 | '(begin |
44884a9d RW |
959 | (substitute* "unsupported/CMakeLists.txt" |
960 | (("add_subdirectory\\(test.*") | |
961 | "# Do not build the tests for unsupported features.\n")) | |
6cbee49d | 962 | #t)))) |
8f4b1dfb LC |
963 | (build-system cmake-build-system) |
964 | (arguments | |
965 | '(;; Turn off debugging symbols to save space. | |
966 | #:build-type "Release" | |
967 | ||
354f4fe2 | 968 | #:phases (modify-phases %standard-phases |
ef8742ea | 969 | (replace 'check |
354f4fe2 | 970 | (lambda _ |
354f4fe2 LC |
971 | (let* ((cores (parallel-job-count)) |
972 | (dash-j (format #f "-j~a" cores))) | |
1137d85b | 973 | (setenv "EIGEN_SEED" "1") ;for reproducibility |
ef8742ea LC |
974 | ;; First build the tests, in parallel. See |
975 | ;; <http://eigen.tuxfamily.org/index.php?title=Tests>. | |
fbe9c80f | 976 | (invoke "make" "buildtests" dash-j) |
8f4b1dfb | 977 | |
fbe9c80f TGR |
978 | ;; Then run 'CTest' with -V so we get more |
979 | ;; details upon failure. | |
980 | (invoke "ctest" "-V" dash-j))))))) | |
eeb8b0e6 | 981 | (home-page "https://eigen.tuxfamily.org") |
8f4b1dfb LC |
982 | (synopsis "C++ template library for linear algebra") |
983 | (description | |
984 | "Eigen is a C++ template library for linear algebra: matrices, vectors, | |
985 | numerical solvers, and related algorithms. It provides an elegant API based | |
986 | on \"expression templates\". It is versatile: it supports all matrix sizes, | |
987 | all standard numeric types, various matrix decompositions and geometry | |
988 | features, and more.") | |
989 | ||
990 | ;; Most of the code is MPLv2, with a few files under LGPLv2.1+ or BSD-3. | |
991 | ;; See 'COPYING.README' for details. | |
9f51293c | 992 | (license license:mpl2.0))) |
70770b93 | 993 | |
697eb65d RW |
994 | (define-public eigen-for-tensorflow |
995 | (let ((changeset "fd6845384b86") | |
996 | (revision "1")) | |
997 | (package (inherit eigen) | |
998 | (name "eigen-for-tensorflow") | |
999 | (version (string-append "3.3.5-" revision "." changeset)) | |
1000 | (source (origin | |
1001 | (method hg-fetch) | |
1002 | (uri (hg-reference | |
1003 | (url "https://bitbucket.org/eigen/eigen") | |
1004 | (changeset changeset))) | |
1005 | (sha256 | |
1006 | (base32 | |
1007 | "12cwgah63wqwb66xji048hcxc1z5zjg8a7701zlia5zbilnnk1n5")) | |
1008 | (file-name (string-append name "-" version "-checkout")) | |
1009 | (modules '((guix build utils))) | |
1010 | (snippet | |
1011 | ;; There are 3 test failures in the "unsupported" directory, | |
1012 | ;; but maintainers say it's a known issue and it's unsupported | |
1013 | ;; anyway, so just skip them. | |
1014 | '(begin | |
1015 | (substitute* "unsupported/CMakeLists.txt" | |
1016 | (("add_subdirectory\\(test.*") | |
1017 | "# Do not build the tests for unsupported features.\n")) | |
1018 | #t))))))) | |
1019 | ||
70770b93 FT |
1020 | (define-public xtensor |
1021 | (package | |
1022 | (name "xtensor") | |
4e6568ce | 1023 | (version "0.20.10") |
70770b93 | 1024 | (source (origin |
e1ecaa83 KK |
1025 | (method git-fetch) |
1026 | (uri (git-reference | |
1027 | (url "https://github.com/QuantStack/xtensor.git") | |
1028 | (commit version))) | |
70770b93 FT |
1029 | (sha256 |
1030 | (base32 | |
4e6568ce | 1031 | "1fmv2hpx610xwhxrndfsfvlbqfyk4l3gi5q5d7pa9m82kblxjj9l")) |
e1ecaa83 | 1032 | (file-name (git-file-name name version)))) |
70770b93 FT |
1033 | (build-system cmake-build-system) |
1034 | (native-inputs | |
1035 | `(("googletest" ,googletest) | |
1036 | ("xtl" ,xtl))) | |
1037 | (arguments | |
1038 | `(#:configure-flags | |
1039 | '("-DBUILD_TESTS=ON") | |
1040 | #:test-target "xtest")) | |
3b1ccad0 | 1041 | (home-page "https://quantstack.net/xtensor") |
70770b93 FT |
1042 | (synopsis "C++ tensors with broadcasting and lazy computing") |
1043 | (description "xtensor is a C++ library meant for numerical analysis with | |
1044 | multi-dimensional array expressions. | |
1045 | ||
1046 | xtensor provides: | |
1047 | @itemize | |
1048 | @item an extensible expression system enabling lazy broadcasting. | |
1049 | @item an API following the idioms of the C++ standard library. | |
1050 | @item tools to manipulate array expressions and build upon xtensor. | |
1051 | @end itemize") | |
1052 | (license license:bsd-3))) | |
3f074a21 AE |
1053 | |
1054 | (define-public gap | |
1055 | (package | |
1056 | (name "gap") | |
c8a227df | 1057 | (version "4.10.2") |
3f074a21 AE |
1058 | (source |
1059 | (origin | |
1060 | (method url-fetch) | |
1061 | (uri (string-append "https://www.gap-system.org/pub/gap/gap-" | |
1062 | (version-major+minor version) | |
1063 | "/tar.bz2/gap-" | |
1064 | version | |
1065 | ".tar.bz2")) | |
1066 | (sha256 | |
c8a227df | 1067 | (base32 "0cp6ddk0469zzv1m1vair6gm27ic6c5m77ri8rn0znq3gaps6x94")) |
3f074a21 AE |
1068 | (modules '((guix build utils) (ice-9 ftw) (srfi srfi-1))) |
1069 | (snippet | |
1070 | '(begin | |
1071 | ;; Delete the external gmp and zlib libraries | |
1072 | ;; and a subdirectory not needed for our build. | |
1073 | (for-each delete-file-recursively | |
1074 | '("extern" "hpcgap")) | |
1075 | ;; Delete a failing test. | |
1076 | ;; FIXME: This might be fixed in the next release, see | |
1077 | ;; https://github.com/gap-system/gap/issues/3292 | |
1078 | (delete-file "tst/testinstall/dir.tst") | |
1079 | ;; Delete all packages except for a fixed list. | |
1080 | (with-directory-excursion "pkg" | |
1081 | (for-each delete-file-recursively | |
1082 | (lset-difference string=? (scandir ".") | |
1083 | '("." ".." | |
1084 | ;; Necessary packages. | |
1085 | "GAPDoc-1.6.2" | |
1086 | "primgrp-3.3.2" | |
1087 | "SmallGrp-1.3" ; artistic2.0 | |
1088 | "transgrp" ; artistic2.0 for data, | |
1089 | ; gpl2 or gpl3 for code | |
1090 | ;; Recommanded package. | |
1091 | "io-4.5.4" ; gpl3+ | |
1092 | ;; Optional packages, searched for at start, | |
1093 | ;; and their depedencies. | |
1094 | "alnuth-3.1.0" | |
3f074a21 AE |
1095 | "autpgrp-1.10" |
1096 | "crisp-1.4.4" ; bsd-2 | |
bf95a142 | 1097 | "ctbllib" ; gpl3+ according to doc/chap0.txt |
3f074a21 AE |
1098 | "FactInt-1.6.2" |
1099 | "fga" | |
1100 | "irredsol-1.4" ; bsd-2 | |
bf95a142 | 1101 | "laguna-3.9.2" |
3f074a21 AE |
1102 | "polenta-1.3.8" |
1103 | "polycyclic-2.14" | |
1104 | "radiroot-2.8" | |
1105 | "resclasses-4.7.1" | |
1106 | "sophus-1.24" | |
bf95a142 AE |
1107 | "tomlib-1.2.7" ; gpl2+, clarified in the git repository |
1108 | ; and the next release | |
3f074a21 AE |
1109 | "utils-0.59")))) |
1110 | #t)))) | |
1111 | (build-system gnu-build-system) | |
1112 | (inputs | |
1113 | `(("gmp" ,gmp) | |
1114 | ("zlib" ,zlib))) | |
1115 | (arguments | |
bf95a142 AE |
1116 | `(#:modules ((ice-9 ftw) |
1117 | (srfi srfi-26) | |
1118 | (guix build gnu-build-system) | |
1119 | (guix build utils)) | |
1120 | #:phases | |
3f074a21 AE |
1121 | (modify-phases %standard-phases |
1122 | (add-after 'build 'build-packages | |
1123 | ;; Compile all packages that have not been deleted by the | |
1124 | ;; code snippet above. | |
1125 | (lambda _ | |
1126 | (setenv "CONFIG_SHELL" (which "bash")) | |
1127 | (with-directory-excursion "pkg" | |
1128 | (invoke "../bin/BuildPackages.sh") | |
1129 | #t))) | |
1130 | (add-after 'build-packages 'build-doc | |
1131 | ;; The documentation is bundled, but we create it from source. | |
1132 | (lambda _ | |
1133 | (with-directory-excursion "doc" | |
1134 | (invoke "./make_doc")) | |
1135 | #t)) | |
3f074a21 AE |
1136 | (replace 'install |
1137 | (lambda* (#:key outputs #:allow-other-keys) | |
1138 | (let* ((out (assoc-ref outputs "out")) | |
1139 | (bin (string-append out "/bin")) | |
bf95a142 | 1140 | (lib (string-append out "/lib")) |
3f074a21 AE |
1141 | (prog (string-append bin "/gap")) |
1142 | (prog-real (string-append bin "/.gap-real")) | |
1143 | (share (string-append out "/share/gap")) | |
bf95a142 AE |
1144 | (include (string-append out "/include/gap")) |
1145 | (include-hpc (string-append include "/hpc"))) | |
3f074a21 AE |
1146 | ;; Install only the gap binary; the gac compiler is left |
1147 | ;; for maybe later. "Wrap" it in a shell script that calls | |
1148 | ;; the binary with the correct parameter. | |
1149 | (mkdir-p bin) | |
1150 | (copy-file "gap" prog-real) | |
1151 | (call-with-output-file prog | |
1152 | (lambda (port) | |
1153 | (format port | |
1154 | "#!~a~%exec ~a -l ~a \"$@\"~%" | |
1155 | (which "bash") | |
1156 | prog-real | |
1157 | share))) | |
1158 | (chmod prog #o755) | |
bf95a142 AE |
1159 | ;; Install the headers, which are needed by Sage. The |
1160 | ;; Makefile target "install-headers" was available in | |
1161 | ;; gap-4.10.0, but has been commented out in gap-4.10.1. | |
1162 | (mkdir-p include-hpc) | |
3f074a21 | 1163 | (install-file "gen/config.h" include) |
bf95a142 AE |
1164 | (let ((file-name-predicate-without-stat |
1165 | (lambda (regex) | |
1166 | (cut (file-name-predicate regex) <> #f)))) | |
1167 | (with-directory-excursion "src" | |
1168 | (for-each | |
1169 | (cut install-file <> include) | |
1170 | (scandir "." | |
1171 | (file-name-predicate-without-stat ".*\\.h$")))) | |
1172 | (with-directory-excursion "src/hpc" | |
1173 | (for-each | |
1174 | (cut install-file <> include-hpc) | |
1175 | (scandir "." | |
1176 | (file-name-predicate-without-stat ".*\\.h$"))))) | |
1177 | ;; Install the library, which is needed by Sage. The | |
1178 | ;; Makefile target "install-libgap" was available in | |
1179 | ;; gap-4.10.0, but has been commented out in gap-4.10.1. | |
1180 | ;; Compared to the Makefile, which used libtool, the | |
1181 | ;; following approach of copying files and making symlinks | |
1182 | ;; is rather pedestrian. There is hope that some later | |
1183 | ;; version of gap reinstates and completes the install | |
1184 | ;; targets. | |
1185 | (invoke "make" "libgap.la") | |
1186 | (install-file "libgap.la" lib) | |
1187 | (install-file ".libs/libgap.so.0.0.0" lib) | |
1188 | (symlink "libgap.so.0.0.0" (string-append lib "/libgap.so")) | |
1189 | (symlink "libgap.so.0.0.0" (string-append lib "/libgap.so.0")) | |
3f074a21 AE |
1190 | ;; Install a certain number of files and directories to |
1191 | ;; SHARE, where the wrapped shell script expects them. | |
1192 | ;; Remove information on the build directory from sysinfo.gap. | |
1193 | (substitute* "sysinfo.gap" | |
1194 | (("GAP_BIN_DIR=\".*\"") "GAP_BIN_DIR=\"\"") | |
1195 | (("GAP_LIB_DIR=\".*\"") "GAP_LIB_DIR=\"\"") | |
1196 | (("GAP_CPPFLAGS=\".*\"") "GAP_CPPFLAGS=\"\"")) | |
1197 | (install-file "sysinfo.gap" share) | |
1198 | (copy-recursively "grp" (string-append share "/grp")) | |
1199 | (copy-recursively "pkg" (string-append share "/pkg")) | |
1200 | ;; The following is not the C library libgap.so, but a | |
1201 | ;; library of GAP code. | |
1202 | (copy-recursively "lib" (string-append share "/lib")) | |
1203 | ;; The gap binary looks for documentation inside SHARE. | |
1204 | (copy-recursively "doc" (string-append share "/doc"))) | |
1205 | #t))))) | |
1206 | (home-page "https://www.gap-system.org/") | |
1207 | (synopsis | |
1208 | "System for computational group theory") | |
1209 | (description | |
1210 | "GAP is a system for computational discrete algebra, with particular | |
1211 | emphasis on computational group theory. It provides a programming language, | |
1212 | a library of thousands of functions implementing algebraic algorithms | |
1213 | written in the GAP language as well as large data libraries of algebraic | |
1214 | objects.") | |
1215 | ;; Some packages have different licenses (effectively forcing the | |
1216 | ;; combined work to be licensed as gpl3+); if this is the case, this | |
1217 | ;; is mentioned above next to their name. | |
1218 | ;; Some packages have no license mentioned explicitly; supposedly this | |
1219 | ;; means that the gpl2+ licence of GAP itself applies, but to be on the | |
1220 | ;; safe side, we drop them for now. | |
1221 | (license license:gpl2+))) | |
f0fbb31d AE |
1222 | |
1223 | (define-public givaro | |
1224 | (package | |
1225 | (name "givaro") | |
1226 | (version "4.1.1") | |
1227 | (source (origin | |
1228 | (method git-fetch) | |
1229 | (uri (git-reference | |
1230 | (url "https://github.com/linbox-team/givaro") | |
1231 | (commit (string-append "v" version)))) | |
1232 | (file-name (git-file-name name version)) | |
1233 | (sha256 | |
1234 | (base32 | |
1235 | "11wz57q6ijsvfs5r82masxgr319as92syi78lnl9lgdblpc6xigk")))) | |
1236 | (build-system gnu-build-system) | |
1237 | (native-inputs | |
1238 | `(("autoconf" ,autoconf) | |
1239 | ("automake" ,automake) | |
1240 | ("libtool" ,libtool))) | |
1241 | (propagated-inputs | |
1242 | `(("gmp" ,gmp))) ; gmp++.h includes gmpxx.h | |
1243 | (arguments | |
1244 | `(#:phases | |
1245 | (modify-phases %standard-phases | |
1246 | (add-before 'bootstrap 'setenv | |
1247 | ;; Prevent the autogen.sh script to carry out the configure | |
1248 | ;; script, which has not yet been patched to replace /bin/sh. | |
1249 | (lambda _ | |
1250 | (setenv "NOCONFIGURE" "yes") | |
1251 | #t))))) | |
1252 | (synopsis "Algebraic computations with exact rings and fields") | |
1253 | (description | |
1254 | "Givaro is a C++ library implementing the basic arithmetic of various | |
1255 | algebraic objects: prime fields, extension fields, finite fields, finite | |
1256 | rings, polynomials, algebraic numbers, arbitrary precision integers and | |
1257 | rationals (C++ wrappers over gmp), fixed precision integers. It also | |
1258 | provides data-structures and templated classes for the manipulation of | |
1259 | compound objects, such as vectors, matrices and univariate polynomials.") | |
1260 | (license license:cecill-b) | |
1261 | (home-page "https://github.com/linbox-team/givaro"))) | |
4bf9cb40 AE |
1262 | |
1263 | (define-public fflas-ffpack | |
1264 | (package | |
1265 | (name "fflas-ffpack") | |
1266 | (version "2.4.3") | |
1267 | (source (origin | |
1268 | (method git-fetch) | |
1269 | (uri (git-reference | |
1270 | (url "https://github.com/linbox-team/fflas-ffpack") | |
1271 | (commit version))) | |
1272 | (file-name (git-file-name name version)) | |
1273 | (sha256 | |
1274 | (base32 | |
1275 | "1ynbjd72qrwp0b4kpn0p5d7gddpvj8dlb5fwdxajr5pvkvi3if74")))) | |
1276 | (build-system gnu-build-system) | |
1277 | (native-inputs | |
1278 | `(("autoconf" ,autoconf) | |
1279 | ("automake" ,automake) | |
1280 | ("libtool" ,libtool) | |
1281 | ("pkg-config" ,pkg-config))) | |
1282 | (inputs | |
1283 | `(("openblas" ,openblas))) | |
1284 | (propagated-inputs | |
1285 | `(("givaro" ,givaro))) ; required according to the .pc file | |
1286 | (arguments | |
1287 | `(#:configure-flags | |
1288 | (list (string-append "--with-blas-libs=" | |
1289 | (assoc-ref %build-inputs "openblas") | |
1290 | "/lib/libopenblas.so")) | |
1291 | #:phases | |
1292 | (modify-phases %standard-phases | |
1293 | (add-before 'bootstrap 'setenv | |
1294 | ;; Prevent the autogen.sh script to carry out the configure | |
1295 | ;; script, which has not yet been patched to replace /bin/sh. | |
1296 | (lambda _ | |
1297 | (setenv "NOCONFIGURE" "yes") | |
1298 | #t))))) | |
1299 | (synopsis "C++ library for linear algebra over finite fields") | |
1300 | (description | |
1301 | "FFLAS-FFPACK is a C++ template library for basic linear algebra | |
1302 | operations over a finite field. | |
1303 | FFLAS (Finite Field Linear Algebra Subprograms) provides the implementation | |
1304 | of a subset of routines of the numerical BLAS; it also supports sparse | |
1305 | matrix-vector products. | |
1306 | FFPACK (Finite Field Linear Algebra Package) is inspired by the LAPACK | |
1307 | library to provide functionalities of higher level, using the kernel | |
1308 | of a BLAS. Additionally, it provides routines specific to exact linear | |
1309 | algebra, such as the row echelon form.") | |
1310 | (license license:lgpl2.1+) | |
1311 | (home-page "https://linbox-team.github.io/fflas-ffpack/"))) | |
a612f866 AE |
1312 | |
1313 | (define-public linbox | |
1314 | (package | |
1315 | (name "linbox") | |
1316 | (version "1.6.3") | |
1317 | (source (origin | |
1318 | (method git-fetch) | |
1319 | (uri (git-reference | |
1320 | (url "https://github.com/linbox-team/linbox") | |
1321 | (commit (string-append "v" version)))) | |
1322 | (file-name (git-file-name name version)) | |
1323 | (sha256 | |
1324 | (base32 | |
1325 | "10j6dspbsq7d2l4q3y0c1l1xwmaqqba2fxg59q5bhgk9h5d7q571")))) | |
1326 | (build-system gnu-build-system) | |
1327 | (native-inputs | |
1328 | `(("autoconf" ,autoconf) | |
1329 | ("automake" ,automake) | |
1330 | ("libtool" ,libtool) | |
1331 | ("pkg-config" ,pkg-config))) | |
1332 | (inputs | |
1333 | `(("fflas-ffpack" ,fflas-ffpack))) | |
1334 | (arguments | |
1335 | `(#:phases | |
1336 | (modify-phases %standard-phases | |
1337 | (add-before 'bootstrap 'setenv | |
1338 | ;; Prevent the autogen.sh script to carry out the configure | |
1339 | ;; script, which has not yet been patched to replace /bin/sh. | |
1340 | (lambda _ | |
1341 | (setenv "NOCONFIGURE" "yes") | |
1342 | #t))))) | |
1343 | (synopsis "C++ library for linear algebra over exact rings") | |
1344 | (description | |
1345 | "LinBox is a C++ template library for exact linear algebra computation | |
1346 | with dense, sparse, and structured matrices over the integers and over | |
1347 | finite fields.") | |
1348 | (license license:lgpl2.1+) | |
1349 | (home-page "https://linbox-team.github.io/linbox/"))) | |
37edfb0f AE |
1350 | |
1351 | (define-public m4ri | |
1352 | (package | |
1353 | (name "m4ri") | |
1354 | (version "20140914") | |
1355 | (source (origin | |
1356 | (method git-fetch) | |
1357 | (uri (git-reference | |
1358 | (url "https://bitbucket.org/malb/m4ri") | |
1359 | (commit (string-append "release-" version)))) | |
1360 | (file-name (git-file-name name version)) | |
1361 | (sha256 | |
1362 | (base32 | |
1363 | "0xfg6pffbn8r1s0y7bn9b8i55l00d41dkmhrpf7pwk53qa3achd3")))) | |
1364 | (build-system gnu-build-system) | |
1365 | (native-inputs | |
1366 | `(("autoconf" ,autoconf) | |
1367 | ("automake" ,automake) | |
1368 | ("libtool" ,libtool) | |
1369 | ("pkg-config" ,pkg-config))) | |
1370 | (inputs | |
1371 | `(("libpng" ,libpng))) | |
1372 | (synopsis "Arithmetic of dense matrices over F_2") | |
1373 | (description "M4RI is a library for fast arithmetic with dense matrices | |
1374 | over F2. The name M4RI comes from the first implemented algorithm: The | |
1375 | Method of the Four Russians inversion algorithm published by Gregory Bard. | |
1376 | This algorithm in turn is named after the Method of the Four Russians | |
1377 | multiplication algorithm.") | |
1378 | (license license:gpl2+) | |
1379 | (home-page "https://bitbucket.org/malb/m4ri/"))) | |
ab398380 | 1380 | |
75a73bb0 NG |
1381 | (define-public symmetrica |
1382 | (package | |
1383 | (name "symmetrica") | |
1384 | (version "2.0") | |
1385 | (source (origin | |
1386 | (method url-fetch/tarbomb) | |
1387 | (uri (let ((v (string-join (string-split version #\.) "_"))) | |
1388 | (string-append "http://www.algorithm.uni-bayreuth.de/" | |
1389 | "en/research/SYMMETRICA/" | |
1390 | "SYM" v "_tar.gz"))) | |
1391 | (sha256 | |
1392 | (base32 | |
1393 | "1qhfrbd5ybb0sinl9pad64rscr08qvlfzrzmi4p4hk61xn6phlmz")) | |
1394 | ;; Taken from <https://git.sagemath.org/sage.git/plain/build/pkgs/symmetrica/patches/> | |
1395 | (patches (search-patches "symmetrica-bruch.patch" | |
1396 | "symmetrica-int32.patch" | |
1397 | "symmetrica-return_values.patch" | |
1398 | "symmetrica-sort_sum_rename.patch")))) | |
1399 | (build-system gnu-build-system) | |
1400 | (arguments | |
1401 | `(#:tests? #f ;no test | |
1402 | #:phases | |
1403 | (modify-phases %standard-phases | |
1404 | (add-after 'unpack 'fix-makefile | |
1405 | (lambda _ | |
1406 | (substitute* "makefile" | |
e6eafd42 | 1407 | (("cc -c") "gcc -c -fPIC")) |
75a73bb0 NG |
1408 | #t)) |
1409 | (add-after 'fix-makefile 'turn-off-banner | |
1410 | (lambda _ | |
1411 | (substitute* "de.c" | |
1412 | (("(INT no_banner = )FALSE" _ pre) (string-append pre "TRUE"))) | |
1413 | #t)) | |
1414 | (delete 'configure) ;no configure script | |
1415 | (replace 'install ;no install target | |
1416 | (lambda* (#:key outputs #:allow-other-keys) | |
1417 | (let* ((out (assoc-ref outputs "out")) | |
1418 | (lib (string-append out "/lib")) | |
1419 | (inc (string-append out "/include/symmetrica")) | |
1420 | (doc (string-append out "/share/doc/symmetrica-" ,version)) | |
1421 | (static "libsymmetrica.a")) | |
1422 | ;; Build static library. | |
1423 | (apply invoke "ar" "crs" static (find-files "." "\\.o$")) | |
1424 | (invoke "ranlib" static) | |
1425 | ;; Install static library and headers. | |
1426 | (for-each (lambda (f) (install-file f inc)) | |
1427 | (find-files "." "\\.h$")) | |
1428 | (install-file "libsymmetrica.a" lib) | |
1429 | ;; Install documentation. | |
1430 | (for-each (lambda (f) (install-file f doc)) | |
1431 | (find-files "." "\\.doc$")) | |
1432 | #t)))))) | |
1433 | (home-page "http://www.algorithm.uni-bayreuth.de/en/research/SYMMETRICA/") | |
1434 | (synopsis "Combinatoric C Library") | |
1435 | (description "Symmetrica is a library for combinatorics. It has support | |
1436 | for the representation theory of the symmetric group and related groups, | |
1437 | combinatorics of tableaux, symmetric functions and polynomials, Schubert | |
1438 | polynomials, and the representation theory of Hecke algebras of type A_n.") | |
1439 | (license license:public-domain))) | |
6cbedbd2 AE |
1440 | |
1441 | (define-public m4rie | |
1442 | (package | |
1443 | (name "m4rie") | |
1444 | (version "20150908") | |
1445 | (source (origin | |
1446 | (method git-fetch) | |
1447 | (uri (git-reference | |
1448 | (url "https://bitbucket.org/malb/m4rie") | |
1449 | (commit (string-append "release-" version)))) | |
1450 | (file-name (git-file-name name version)) | |
1451 | (sha256 | |
1452 | (base32 | |
1453 | "0r8lv46qx5mkz5kp3ay2jnsp0mbhlqr5z2z220wdk73wdshcznss")))) | |
1454 | (build-system gnu-build-system) | |
1455 | (native-inputs | |
1456 | `(("autoconf" ,autoconf) | |
1457 | ("automake" ,automake) | |
1458 | ("libtool" ,libtool))) | |
1459 | (inputs | |
1460 | `(("m4ri" ,m4ri))) | |
1461 | (synopsis "Arithmetic of dense matrices over F_{2^e}") | |
1462 | (description "M4RI is a library for fast arithmetic with dense matrices | |
1463 | over finite fields of characteristic 2. So it extends the functionality | |
1464 | of M4RI from F_2 to F_{2^e}.") | |
1465 | (license license:gpl2+) | |
1466 | (home-page "https://bitbucket.org/malb/m4rie/"))) | |
66c67e7b AE |
1467 | |
1468 | (define-public eclib | |
1469 | (package | |
1470 | (name "eclib") | |
9a5f35fe | 1471 | (version "20190909") |
66c67e7b AE |
1472 | (source (origin |
1473 | (method git-fetch) | |
1474 | (uri (git-reference | |
1475 | (url "https://github.com/JohnCremona/eclib/") | |
1476 | (commit (string-append "v" version)))) | |
1477 | (file-name (git-file-name name version)) | |
1478 | (sha256 | |
1479 | (base32 | |
9a5f35fe | 1480 | "1gw27lqc3f525n8qdcmr2nyn16y9g10z9f6dnmckyyxcdzvhq35n")))) |
66c67e7b AE |
1481 | (build-system gnu-build-system) |
1482 | (native-inputs | |
1483 | `(("autoconf" ,autoconf) | |
1484 | ("automake" ,automake) | |
1485 | ("libtool" ,libtool))) | |
1486 | (inputs | |
d96ad7fa | 1487 | `(("ntl" ,ntl) |
66c67e7b AE |
1488 | ("pari-gp" ,pari-gp))) |
1489 | (synopsis "Ranks of elliptic curves and modular symbols") | |
1490 | (description "The eclib package includes mwrank (for 2-descent on | |
1491 | elliptic curves over Q) and modular symbol code; it has been written by | |
1492 | John Cremona to compute his elliptic curve database.") | |
1493 | (license license:gpl2+) | |
1494 | (home-page (string-append "http://homepages.warwick.ac.uk/staff/" | |
1495 | "J.E.Cremona/mwrank/index.html")))) | |
197ebc36 AE |
1496 | |
1497 | (define-public lrcalc | |
1498 | (package | |
1499 | (name "lrcalc") | |
1500 | (version "1.2") | |
1501 | (source (origin | |
1502 | (method git-fetch) | |
1503 | (uri (git-reference | |
1504 | (url "https://bitbucket.org/asbuch/lrcalc") | |
1505 | (commit (string-append "lrcalc-" version)))) | |
1506 | (file-name (git-file-name name version)) | |
1507 | (sha256 | |
1508 | (base32 | |
88f913e8 AE |
1509 | "1c12d04jdyxkkav4ak8d1aqrv594gzihwhpxvc6p9js0ry1fahss")) |
1510 | (patches (search-patches "lrcalc-includes.patch")))) | |
197ebc36 AE |
1511 | (build-system gnu-build-system) |
1512 | (native-inputs | |
1513 | `(("autoconf" ,autoconf) | |
1514 | ("automake" ,automake) | |
1515 | ("libtool" ,libtool))) | |
1516 | (arguments | |
1517 | `(#:phases | |
1518 | (modify-phases %standard-phases | |
1519 | (add-before 'build 'fix-permission | |
1520 | (lambda _ | |
1521 | (chmod "lrcalc.maple.src" #o644) | |
1522 | #t))))) | |
1523 | (synopsis "Littlewood-Richardson calculator in algebraic combinatorics") | |
1524 | (description "The Littlewood-Richardson Calculator (lrcalc) is a | |
1525 | program designed to compute Littlewood-Richardson coefficients. It computes | |
1526 | single Littlewood-Richardson coefficients, products of Schur functions, or | |
1527 | skew Schur functions. In addition it computes products in the small quantum | |
1528 | cohomology ring of a Grassmann variety. The software package also includes | |
1529 | a program that performs fast computation of the more general multiplicative | |
1530 | structure constants of Schubert polynomials.") | |
1531 | (license license:gpl2+) | |
1e30dff3 | 1532 | (home-page "https://sites.math.rutgers.edu/~asbuch/lrcalc/"))) |
eacf2983 AE |
1533 | |
1534 | (define-public iml | |
1535 | (package | |
1536 | (name "iml") | |
1537 | (version "1.0.5") | |
1538 | (source | |
1539 | (origin | |
1540 | (method url-fetch) | |
1541 | (uri (string-append "http://www.cs.uwaterloo.ca/~astorjoh/iml-" | |
1542 | version ".tar.bz2")) | |
1543 | (sha256 | |
1544 | (base32 | |
1545 | "0akwhhz9b40bz6lrfxpamp7r7wkk48p455qbn04mfnl9a1l6db8x")))) | |
1546 | (build-system gnu-build-system) | |
1547 | (inputs | |
1548 | `(("gmp", gmp) | |
1549 | ("cblas" ,openblas))) ; or any other BLAS library; the documentation | |
1550 | ; mentions ATLAS in particular | |
1551 | (arguments | |
1552 | `(#:configure-flags | |
1553 | (list | |
c68ec87c | 1554 | "--enable-shared" |
eacf2983 AE |
1555 | (string-append "--with-gmp-include=" |
1556 | (assoc-ref %build-inputs "gmp") "/include") | |
1557 | (string-append "--with-gmp-lib=" | |
1558 | (assoc-ref %build-inputs "gmp") "/lib") | |
1559 | "--with-cblas=-lopenblas" | |
1560 | (string-append "--with-cblas-include=" | |
1561 | (assoc-ref %build-inputs "cblas") "/include") | |
1562 | (string-append "--with-cblas-lib=" | |
1563 | (assoc-ref %build-inputs "cblas") "/lib")))) | |
1564 | (home-page "https://cs.uwaterloo.ca/~astorjoh/iml.html") | |
1565 | (synopsis | |
1566 | "Solver for systems of linear equations over the integers") | |
1567 | (description | |
1568 | "IML is a C library implementing algorithms for computing exact | |
1569 | solutions to dense systems of linear equations over the integers. | |
1570 | Currently, IML provides the following functionality: | |
1571 | ||
1572 | @itemize | |
1573 | @item Nonsingular rational system solving: | |
1574 | compute the unique rational solution X to the system AX=B, where A and B | |
1575 | are integer matrices, A nonsingular. | |
1576 | @item Compute the right nullspace or kernel of an integer matrix. | |
1577 | @item Certified linear system solving: | |
1578 | compute a minimal denominator solution x to a system Ax=b, where b is an | |
1579 | integer vector and A is an integer matrix with arbitrary shape and | |
1580 | rank profile. | |
1581 | @end itemize | |
1582 | ||
1583 | In addition, IML provides some low level routines for a variety of mod p | |
1584 | matrix operations: computing the row-echelon form, determinant, rank | |
1585 | profile, and inverse of a mod p matrix. These mod p routines are not | |
1586 | general purpose; they require that p satisfy some preconditions based on | |
1587 | the dimension of the input matrix (usually p should be prime and should be | |
1588 | no more than about 20 bits long).") | |
1589 | (license license:bsd-3))) |