Commit | Line | Data |
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233e7676 | 1 | ;;; GNU Guix --- Functional package management for GNU |
3f074a21 | 2 | ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Andreas Enge <andreas@enge.fr> |
4b0bf990 | 3 | ;;; Copyright © 2013, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org> |
7f055a0a | 4 | ;;; Copyright © 2016, 2017, 2018, 2019 Nicolas Goaziou <mail@nicolasgoaziou.fr> |
69d5909e | 5 | ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org> |
67f39dd5 | 6 | ;;; Copyright © 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> |
ecc5bc33 | 7 | ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il> |
ff6807dc | 8 | ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> |
f71f29ca | 9 | ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> |
eb6785cf | 10 | ;;; Copyright © 2017, 2019 Eric Bavier <bavier@member.fsf.org> |
2ed139c4 | 11 | ;;; |
233e7676 | 12 | ;;; This file is part of GNU Guix. |
2ed139c4 | 13 | ;;; |
233e7676 | 14 | ;;; GNU Guix is free software; you can redistribute it and/or modify it |
2ed139c4 AE |
15 | ;;; under the terms of the GNU General Public License as published by |
16 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
17 | ;;; your option) any later version. | |
18 | ;;; | |
233e7676 | 19 | ;;; GNU Guix is distributed in the hope that it will be useful, but |
2ed139c4 AE |
20 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of |
21 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
22 | ;;; GNU General Public License for more details. | |
23 | ;;; | |
24 | ;;; You should have received a copy of the GNU General Public License | |
233e7676 | 25 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. |
2ed139c4 | 26 | |
1ffa7090 | 27 | (define-module (gnu packages algebra) |
59a43334 | 28 | #:use-module (gnu packages) |
14e6520e | 29 | #:use-module (gnu packages autotools) |
fdb513a7 | 30 | #:use-module (gnu packages bison) |
70770b93 | 31 | #:use-module (gnu packages check) |
10b1f688 | 32 | #:use-module (gnu packages compression) |
70770b93 | 33 | #:use-module (gnu packages cpp) |
99828fa7 | 34 | #:use-module (gnu packages documentation) |
f71f29ca | 35 | #:use-module (gnu packages ed) |
5894b604 | 36 | #:use-module (gnu packages flex) |
57497c57 NG |
37 | #:use-module (gnu packages fltk) |
38 | #:use-module (gnu packages gl) | |
aae03c48 | 39 | #:use-module (gnu packages graphviz) |
57497c57 | 40 | #:use-module (gnu packages image) |
c8d99608 | 41 | #:use-module (gnu packages java) |
aae03c48 | 42 | #:use-module (gnu packages maths) |
0fc54d4b | 43 | #:use-module (gnu packages mpi) |
5894b604 | 44 | #:use-module (gnu packages multiprecision) |
1ffa7090 | 45 | #:use-module (gnu packages perl) |
6d3896b9 | 46 | #:use-module (gnu packages pulseaudio) |
aae03c48 | 47 | #:use-module (gnu packages python) |
1d6589db | 48 | #:use-module (gnu packages python-xyz) |
5894b604 | 49 | #:use-module (gnu packages readline) |
b7194849 | 50 | #:use-module (gnu packages shells) |
8f9ac901 | 51 | #:use-module (gnu packages tex) |
f71f29ca | 52 | #:use-module (gnu packages texinfo) |
57497c57 | 53 | #:use-module (gnu packages xiph) |
fb8d1be8 | 54 | #:use-module (gnu packages xorg) |
c8d99608 | 55 | #:use-module (guix build-system ant) |
7569c5cb | 56 | #:use-module (guix build-system gnu) |
8f4b1dfb | 57 | #:use-module (guix build-system cmake) |
1d6589db | 58 | #:use-module (guix build-system python) |
5894b604 | 59 | #:use-module (guix download) |
c8d99608 | 60 | #:use-module (guix git-download) |
697eb65d | 61 | #:use-module (guix hg-download) |
5894b604 TGR |
62 | #:use-module ((guix licenses) #:prefix license:) |
63 | #:use-module (guix packages) | |
7569c5cb | 64 | #:use-module (guix utils)) |
2ed139c4 AE |
65 | |
66 | ||
67 | (define-public mpfrcx | |
68 | (package | |
69 | (name "mpfrcx") | |
43a776e2 | 70 | (version "0.5") |
2ed139c4 AE |
71 | (source (origin |
72 | (method url-fetch) | |
73 | (uri (string-append | |
43a776e2 | 74 | "http://www.multiprecision.org/downloads/mpfrcx-" |
2ed139c4 AE |
75 | version ".tar.gz")) |
76 | (sha256 | |
77 | (base32 | |
43a776e2 | 78 | "1s968480ymv6w0rnvfp9mxvx98hvi29fkvw8nk4ggzc6azxgwybs")))) |
2ed139c4 | 79 | (build-system gnu-build-system) |
878c8f3f AE |
80 | (propagated-inputs |
81 | `(("gmp" ,gmp) | |
82 | ("mpfr" ,mpfr) | |
83 | ("mpc" ,mpc))) ; Header files are included by mpfrcx.h. | |
35b9e423 | 84 | (synopsis "Arithmetic of polynomials over arbitrary precision numbers") |
2ed139c4 | 85 | (description |
35b9e423 | 86 | "Mpfrcx is a library for the arithmetic of univariate polynomials over |
2ed139c4 | 87 | arbitrary precision real (mpfr) or complex (mpc) numbers, without control |
35b9e423 | 88 | on the rounding. For the time being, only the few functions needed to |
2ed139c4 | 89 | implement the floating point approach to complex multiplication are |
35b9e423 | 90 | implemented. On the other hand, these comprise asymptotically fast |
e881752c | 91 | multiplication routines such as Toom–Cook and the FFT.") |
43a776e2 | 92 | (license license:lgpl3+) |
2ed139c4 AE |
93 | (home-page "http://mpfrcx.multiprecision.org/"))) |
94 | ||
10b1f688 AE |
95 | (define-public cm |
96 | (package | |
97 | (name "cm") | |
81b55bf7 | 98 | (version "0.3") |
10b1f688 AE |
99 | (source (origin |
100 | (method url-fetch) | |
101 | (uri (string-append | |
102 | "http://www.multiprecision.org/cm/download/cm-" | |
103 | version ".tar.gz")) | |
104 | (sha256 | |
105 | (base32 | |
81b55bf7 | 106 | "1nf5kr0nqmhbzrsrinky18z0ighjpsmb5cr8zyg8jf04bfbyrfmc")))) |
10b1f688 AE |
107 | (build-system gnu-build-system) |
108 | (propagated-inputs | |
109 | `(("mpfrcx" ,mpfrcx) | |
110 | ("zlib" ,zlib))) ; Header files included from cm_common.h. | |
111 | (inputs | |
112 | `(("pari-gp" ,pari-gp))) | |
113 | (synopsis "CM constructions for elliptic curves") | |
114 | (description | |
115 | "The CM software implements the construction of ring class fields of | |
116 | imaginary quadratic number fields and of elliptic curves with complex | |
117 | multiplication via floating point approximations. It consists of libraries | |
118 | that can be called from within a C program and of executable command | |
119 | line applications.") | |
81b55bf7 | 120 | (license license:gpl3+) |
10b1f688 AE |
121 | (home-page "http://cm.multiprecision.org/"))) |
122 | ||
2ed139c4 AE |
123 | (define-public fplll |
124 | (package | |
125 | (name "fplll") | |
5a15ed50 | 126 | (version "4.0.4") |
2ed139c4 AE |
127 | (source (origin |
128 | (method url-fetch) | |
129 | (uri (string-append | |
130 | "http://perso.ens-lyon.fr/damien.stehle/fplll/libfplll-" | |
131 | version ".tar.gz")) | |
132 | (sha256 (base32 | |
5a15ed50 | 133 | "1cbiby7ykis4z84swclpysrljmqhfcllpkcbll1m08rzskgb1a6b")))) |
2ed139c4 AE |
134 | (build-system gnu-build-system) |
135 | (inputs `(("gmp" ,gmp) | |
136 | ("mpfr" ,mpfr))) | |
35b9e423 | 137 | (synopsis "Library for LLL-reduction of euclidean lattices") |
2ed139c4 | 138 | (description |
35b9e423 | 139 | "fplll LLL-reduces euclidean lattices. Since version 3, it can also |
2ed139c4 | 140 | solve the shortest vector problem.") |
9f51293c | 141 | (license license:lgpl2.1+) |
2ed139c4 | 142 | (home-page "http://perso.ens-lyon.fr/damien.stehle/fplll/"))) |
4e6b699d | 143 | |
90a6d47c AE |
144 | (define-public pari-gp |
145 | (package | |
67f39dd5 RW |
146 | (name "pari-gp") |
147 | (version "2.11.1") | |
148 | (source (origin | |
149 | (method url-fetch) | |
150 | (uri (string-append | |
151 | "https://pari.math.u-bordeaux.fr/pub/pari/unix/pari-" | |
152 | version ".tar.gz")) | |
153 | (sha256 | |
154 | (base32 | |
4ebfe99a | 155 | "1jfax92jpydjd02fwl30r6b8kfzqqd6sm4yx94gidyz9lqjb7a94")))) |
67f39dd5 RW |
156 | (build-system gnu-build-system) |
157 | (native-inputs | |
158 | `(("texlive" ,(texlive-union | |
159 | (list texlive-fonts-amsfonts | |
160 | texlive-latex-amsfonts))))) | |
161 | (inputs `(("gmp" ,gmp) | |
162 | ("libx11" ,libx11) | |
163 | ("perl" ,perl) | |
164 | ("readline" ,readline))) | |
165 | (arguments | |
166 | '(#:make-flags '("all") | |
167 | #:test-target "dobench" | |
168 | #:phases | |
169 | (modify-phases %standard-phases | |
170 | (replace 'configure | |
171 | (lambda* (#:key outputs #:allow-other-keys) | |
172 | (invoke "./Configure" | |
173 | (string-append "--prefix=" | |
174 | (assoc-ref outputs "out")))))))) | |
175 | (synopsis "PARI/GP, a computer algebra system for number theory") | |
176 | (description | |
177 | "PARI/GP is a widely used computer algebra system designed for fast | |
90a6d47c AE |
178 | computations in number theory (factorisations, algebraic number theory, |
179 | elliptic curves...), but it also contains a large number of other useful | |
180 | functions to compute with mathematical entities such as matrices, | |
181 | polynomials, power series, algebraic numbers, etc., and a lot of | |
182 | transcendental functions. | |
183 | PARI is also available as a C library to allow for faster computations.") | |
67f39dd5 RW |
184 | (license license:gpl2+) |
185 | (home-page "https://pari.math.u-bordeaux.fr/"))) | |
ed9f9a77 | 186 | |
f854a8c1 AE |
187 | (define-public gp2c |
188 | (package | |
189 | (name "gp2c") | |
44ff80fc | 190 | (version "0.0.11pl1") |
f854a8c1 AE |
191 | (source (origin |
192 | (method url-fetch) | |
193 | (uri (string-append | |
eeb8b0e6 | 194 | "https://pari.math.u-bordeaux.fr/pub/pari/GP2C/gp2c-" |
f854a8c1 | 195 | version ".tar.gz")) |
324bdcd8 AE |
196 | (sha256 |
197 | (base32 | |
44ff80fc | 198 | "1c6f6vmncw032kfzrfyr8bynw6yd3faxpy2285r009fmr0zxfs5s")))) |
f854a8c1 | 199 | (build-system gnu-build-system) |
c67ccedd | 200 | (native-inputs `(("perl" ,perl))) |
f854a8c1 AE |
201 | (inputs `(("pari-gp" ,pari-gp))) |
202 | (arguments | |
203 | '(#:configure-flags | |
204 | (list (string-append "--with-paricfg=" | |
205 | (assoc-ref %build-inputs "pari-gp") | |
206 | "/lib/pari/pari.cfg")))) | |
207 | (synopsis "PARI/GP, a computer algebra system for number theory") | |
208 | (description | |
209 | "PARI/GP is a widely used computer algebra system designed for fast | |
210 | computations in number theory (factorisations, algebraic number theory, | |
211 | elliptic curves...), but it also contains a large number of other useful | |
212 | functions to compute with mathematical entities such as matrices, | |
213 | polynomials, power series, algebraic numbers, etc., and a lot of | |
214 | transcendental functions. | |
215 | PARI is also available as a C library to allow for faster computations. | |
216 | ||
217 | GP2C, the GP to C compiler, translates GP scripts to PARI programs.") | |
9f51293c | 218 | (license license:gpl2) |
eeb8b0e6 | 219 | (home-page "https://pari.math.u-bordeaux.fr/"))) |
f854a8c1 | 220 | |
eea7cd75 AE |
221 | (define-public cmh |
222 | (package | |
223 | (name "cmh") | |
224 | (version "1.0") | |
225 | (source (origin | |
226 | (method url-fetch) | |
227 | (uri (string-append | |
228 | "https://gforge.inria.fr/frs/download.php/33497/cmh-" | |
229 | version ".tar.gz")) | |
230 | (sha256 | |
231 | (base32 | |
232 | "1a28xr9bs0igms0ik99x0w8lnb0jyfcmvyi26pbyh9ggcdivd33p")))) | |
233 | (build-system gnu-build-system) | |
234 | (inputs | |
235 | `(("gmp" ,gmp) | |
236 | ("mpfr" ,mpfr) | |
237 | ("mpc" ,mpc) | |
238 | ("mpfrcx" ,mpfrcx) | |
239 | ("fplll" ,fplll) | |
240 | ("pari-gp" ,pari-gp))) | |
241 | (synopsis "Igusa class polynomial computations") | |
242 | (description | |
243 | "The CMH software computes Igusa (genus 2) class polynomials, which | |
244 | parameterize the CM points in the moduli space of 2-dimensional abelian | |
245 | varieties, i.e. Jacobians of hyperelliptic curves. | |
246 | It can also be used to compute theta constants at arbitrary | |
247 | precision.") | |
248 | (license license:gpl3+) | |
249 | (home-page "http://cmh.gforge.inria.fr/"))) | |
250 | ||
7fc0e3db | 251 | (define-public giac |
57497c57 | 252 | (package |
7fc0e3db | 253 | (name "giac") |
fd4d3939 | 254 | (version "1.5.0-57") |
57497c57 NG |
255 | (source (origin |
256 | (method url-fetch) | |
257 | ;; "~parisse/giac" is not used because the maintainer regularly | |
258 | ;; overwrites the release tarball there, introducing a checksum | |
259 | ;; mismatch every time. See | |
260 | ;; <https://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/README> | |
261 | (uri (string-append "https://www-fourier.ujf-grenoble.fr/" | |
262 | "~parisse/debian/dists/stable/main/" | |
263 | "source/giac_" version ".tar.gz")) | |
264 | (sha256 | |
265 | (base32 | |
fd4d3939 | 266 | "08c93knsisbk9dkyyrignw0wvqbr1sa5czlvk5l307ahxbbmqncf")))) |
57497c57 NG |
267 | (build-system gnu-build-system) |
268 | (arguments | |
af90cc45 NG |
269 | `(#:modules ((ice-9 ftw) |
270 | (guix build utils) | |
271 | (guix build gnu-build-system)) | |
272 | #:phases | |
57497c57 NG |
273 | (modify-phases %standard-phases |
274 | (add-after 'unpack 'patch-bin-cp | |
90d5ec55 | 275 | ;; Some Makefiles contain hard-coded "/bin/cp". |
57497c57 | 276 | (lambda _ |
57497c57 NG |
277 | (substitute* (find-files "doc" "^Makefile") |
278 | (("/bin/cp") (which "cp"))) | |
90d5ec55 NG |
279 | #t)) |
280 | (add-after 'unpack 'disable-failing-test | |
281 | ;; FIXME: Test failing. Not sure why. | |
282 | (lambda _ | |
283 | (substitute* "check/Makefile.in" | |
284 | (("chk_fhan11") "")) | |
af90cc45 | 285 | #t)) |
9f73ac24 | 286 | (add-after 'install 'fix-doc |
af90cc45 | 287 | (lambda* (#:key outputs #:allow-other-keys) |
9f73ac24 NG |
288 | (let ((out (assoc-ref outputs "out"))) |
289 | ;; Most French documentation has a non-commercial | |
290 | ;; license, so we need to remove it. | |
291 | (with-directory-excursion (string-append out "/share/giac/doc/fr") | |
292 | (for-each delete-file-recursively | |
293 | '("cascas" "casexo" "casgeo" "casrouge" "cassim" | |
294 | "castor"))) | |
295 | ;; Remove duplicate documentation in | |
296 | ;; "%out/share/doc/giac/", where Xcas does not expect | |
297 | ;; to find it. | |
298 | (delete-file-recursively (string-append out "/share/doc/giac")) | |
299 | #t))) | |
300 | (add-after 'install 'remove-unnecessary-executable | |
301 | (lambda* (#:key outputs #:allow-other-keys) | |
302 | (let ((out (assoc-ref outputs "out"))) | |
303 | (delete-file (string-append out "/bin/xcasnew")) | |
304 | #t)))))) | |
57497c57 | 305 | (inputs |
6d3896b9 | 306 | ;;; TODO: Add libnauty. |
57497c57 | 307 | `(("fltk" ,fltk) |
6d3896b9 | 308 | ("glpk" ,glpk) |
57497c57 NG |
309 | ("gmp" ,gmp) |
310 | ("gsl" ,gsl) | |
311 | ("lapack" ,lapack) | |
312 | ("libao" ,ao) | |
313 | ("libjpeg" ,libjpeg) | |
314 | ("libpng" ,libpng) | |
6d3896b9 | 315 | ("libsamplerate" ,libsamplerate) |
57497c57 | 316 | ("libx11" ,libx11) |
99a00446 | 317 | ("libxinerama" ,libxinerama) |
57497c57 NG |
318 | ("libxft" ,libxft) |
319 | ("libxt" ,libxt) | |
320 | ("mesa" ,mesa) | |
321 | ("mpfi" ,mpfi) | |
322 | ("mpfr" ,mpfr) | |
323 | ("ntl" ,ntl) | |
324 | ("perl" ,perl) | |
325 | ("pari-gp" ,pari-gp) | |
9f73ac24 NG |
326 | ("tcsh" ,tcsh))) |
327 | (native-inputs | |
6d3896b9 NG |
328 | `(("bison" ,bison) |
329 | ("flex" ,flex) | |
330 | ("readline" ,readline) | |
a023ec6e | 331 | ("texlive" ,texlive-tiny))) |
57497c57 NG |
332 | (home-page "https://www-fourier.ujf-grenoble.fr/~parisse/giac.html") |
333 | (synopsis "Computer algebra system") | |
334 | (description | |
335 | "Giac/Xcas is a computer algebra system. It has a compatibility mode for | |
336 | maple, mupad and the TI89. It is available as a standalone program (graphic | |
337 | or text interfaces) or as a C++ library.") | |
338 | (license license:gpl3+))) | |
339 | ||
7fc0e3db | 340 | (define-public giac-xcas |
e0f3a4fe | 341 | (deprecated-package "giac-xcas" giac)) |
7fc0e3db | 342 | |
d7ab698a AE |
343 | (define-public flint |
344 | (package | |
345 | (name "flint") | |
6c591c8e | 346 | (version "2.5.2") |
d7ab698a AE |
347 | (source (origin |
348 | (method url-fetch) | |
349 | (uri (string-append | |
350 | "http://flintlib.org/flint-" | |
351 | version ".tar.gz")) | |
352 | (sha256 (base32 | |
6c591c8e | 353 | "11syazv1a8rrnac3wj3hnyhhflpqcmq02q8pqk2m6g2k6h0gxwfb")) |
fc1adab1 | 354 | (patches (search-patches "flint-ldconfig.patch")))) |
d7ab698a | 355 | (build-system gnu-build-system) |
df15d17d | 356 | (propagated-inputs |
d7ab698a | 357 | `(("gmp" ,gmp) |
df15d17d | 358 | ("mpfr" ,mpfr))) ; header files from both are included by flint/arith.h |
d7ab698a | 359 | (arguments |
ad11974e AE |
360 | `(#:parallel-tests? #f ; seems to be necessary on arm |
361 | #:phases | |
91430de6 AE |
362 | (modify-phases %standard-phases |
363 | (replace 'configure | |
364 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
365 | (let ((out (assoc-ref outputs "out")) | |
366 | (gmp (assoc-ref inputs "gmp")) | |
367 | (mpfr (assoc-ref inputs "mpfr"))) | |
91430de6 AE |
368 | ;; do not pass "--enable-fast-install", which makes the |
369 | ;; homebrew configure process fail | |
50233d95 | 370 | (invoke "./configure" |
91430de6 AE |
371 | (string-append "--prefix=" out) |
372 | (string-append "--with-gmp=" gmp) | |
50233d95 RW |
373 | (string-append "--with-mpfr=" mpfr)) |
374 | #t)))))) | |
d7ab698a AE |
375 | (synopsis "Fast library for number theory") |
376 | (description | |
377 | "FLINT is a C library for number theory. It supports arithmetic | |
378 | with numbers, polynomials, power series and matrices over many base | |
379 | rings, including multiprecision integers and rationals, integers | |
380 | modulo n, p-adic numbers, finite fields (prime and non-prime order) | |
381 | and real and complex numbers (via the Arb extension library). | |
382 | ||
383 | Operations that can be performed include conversions, arithmetic, | |
384 | GCDs, factoring, solving linear systems, and evaluating special | |
385 | functions. In addition, FLINT provides various low-level routines for | |
386 | fast arithmetic.") | |
9f51293c | 387 | (license license:gpl2+) |
d7ab698a AE |
388 | (home-page "http://flintlib.org/"))) |
389 | ||
6b8e8285 AE |
390 | (define-public arb |
391 | (package | |
6aa54e23 | 392 | (name "arb") |
402db511 | 393 | (version "2.16.0") |
6aa54e23 RW |
394 | (source (origin |
395 | (method git-fetch) | |
396 | (uri (git-reference | |
397 | (url "https://github.com/fredrik-johansson/arb.git") | |
398 | (commit version))) | |
399 | (file-name (git-file-name name version)) | |
400 | (sha256 | |
401 | (base32 | |
402db511 | 402 | "0478671wfwy3gl26sbxh1jq1ih36z4k72waa8y2y2lvn649gb7cd")))) |
6aa54e23 RW |
403 | (build-system gnu-build-system) |
404 | (propagated-inputs | |
405 | `(("flint" ,flint))) ; flint.h is included by arf.h | |
406 | (inputs | |
407 | `(("gmp" ,gmp) | |
408 | ("mpfr" ,mpfr))) | |
409 | (arguments | |
410 | `(#:phases | |
411 | (modify-phases %standard-phases | |
412 | (replace 'configure | |
413 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
414 | (let ((out (assoc-ref outputs "out")) | |
415 | (flint (assoc-ref inputs "flint")) | |
416 | (gmp (assoc-ref inputs "gmp")) | |
417 | (mpfr (assoc-ref inputs "mpfr"))) | |
418 | ;; do not pass "--enable-fast-install", which makes the | |
419 | ;; homebrew configure process fail | |
420 | (invoke "./configure" | |
421 | (string-append "--prefix=" out) | |
422 | (string-append "--with-flint=" flint) | |
423 | (string-append "--with-gmp=" gmp) | |
424 | (string-append "--with-mpfr=" mpfr)))))))) | |
425 | (synopsis "Arbitrary precision floating-point ball arithmetic") | |
426 | (description | |
427 | "Arb is a C library for arbitrary-precision floating-point ball | |
6b8e8285 AE |
428 | arithmetic. It supports efficient high-precision computation with |
429 | polynomials, power series, matrices and special functions over the | |
430 | real and complex numbers, with automatic, rigorous error control.") | |
6aa54e23 RW |
431 | (license license:lgpl2.1+) |
432 | (home-page "http://fredrikj.net/arb/"))) | |
6b8e8285 | 433 | |
1d6589db AE |
434 | (define-public python-flint |
435 | (package | |
436 | (name "python-flint") | |
437 | (version "0.3.0") | |
438 | (source (origin | |
439 | (method git-fetch) | |
440 | (uri (git-reference | |
441 | (url "https://github.com/fredrik-johansson/python-flint.git") | |
442 | (commit version))) | |
443 | (file-name (git-file-name name version)) | |
444 | (sha256 | |
445 | (base32 | |
446 | "1v0anazbj1cfi68nl2j6dbd31kgkc1563xmr0zk5xk3xj78569pw")) | |
447 | (patches (search-patches "python-flint-includes.patch")))) | |
448 | (build-system python-build-system) | |
449 | (native-inputs | |
450 | `(("python-cython" ,python-cython))) | |
451 | (propagated-inputs | |
452 | `(("python-numpy" ,python-numpy))) | |
453 | (inputs | |
454 | `(("arb" ,arb) | |
455 | ("flint" ,flint))) | |
456 | (synopsis "Python module wrapping ARB and FLINT") | |
457 | (description | |
458 | "Python-flint is a Python extension module wrapping FLINT | |
459 | (Fast Library for Number Theory) and Arb (arbitrary-precision ball | |
460 | arithmetic). It supports integers, rationals, modular integers, | |
461 | real and complex ball arithmetic, polynomials and matrices over all | |
462 | these types and other mathematical functions.") | |
463 | (license license:expat) | |
464 | (home-page "http://fredrikj.net/python-flint/"))) | |
465 | ||
14e6520e AE |
466 | (define-public ntl |
467 | (package | |
468 | (name "ntl") | |
469 | (version "9.7.0") | |
470 | (source (origin | |
471 | (method url-fetch) | |
472 | (uri (string-append "http://shoup.net/ntl/ntl-" | |
473 | version ".tar.gz")) | |
474 | (sha256 (base32 | |
475 | "115frp5flyvw9wghz4zph1b3llmr5nbxk1skgsggckr81fh3gmxq")))) | |
476 | (build-system gnu-build-system) | |
477 | (native-inputs | |
478 | `(("libtool" ,libtool) | |
479 | ("perl" ,perl))) ; for configuration | |
480 | ;; FIXME: Add optional input gf2x once available; then also add | |
481 | ;; configure flag "NTL_GF2X_LIB=on". | |
482 | (inputs | |
483 | `(("gmp" ,gmp))) | |
484 | (arguments | |
485 | `(#:phases | |
486 | (modify-phases %standard-phases | |
487 | (replace 'configure | |
488 | (lambda* (#:key outputs #:allow-other-keys) | |
489 | (chdir "src") | |
490 | (system* "./configure" | |
491 | (string-append "PREFIX=" (assoc-ref outputs "out")) | |
492 | ;; Do not build especially for the build machine. | |
493 | "NATIVE=off" | |
494 | ;; Also do not tune to the build machine. | |
495 | "WIZARD=off" | |
496 | "SHARED=on") | |
497 | #t))))) | |
498 | (synopsis "C++ library for number theory") | |
499 | (description | |
500 | "NTL is a C++ library providing data structures and algorithms | |
501 | for manipulating signed, arbitrary length integers, and for vectors, | |
502 | matrices, and polynomials over the integers and over finite fields.") | |
503 | (license license:gpl2+) | |
504 | (home-page "http://shoup.net/ntl/"))) | |
505 | ||
aae03c48 AE |
506 | (define-public singular |
507 | (package | |
508 | (name "singular") | |
ff6807dc | 509 | (version "4.1.2p1") |
f35c3bbb KK |
510 | (source |
511 | (origin | |
512 | (method url-fetch) | |
513 | (uri | |
514 | (string-append "http://www.mathematik.uni-kl.de/ftp/pub/Math/" | |
515 | "Singular/SOURCES/" | |
516 | (string-join | |
517 | (string-split | |
518 | (string-trim-right version #\p | |
519 | 0 (1- (string-length version))) | |
520 | #\.) "-") | |
521 | "/singular-" version ".tar.gz")) | |
522 | (sha256 (base32 | |
ff6807dc | 523 | "0kvd55353fiqyq1msmi0kka66n5h0aqs7m3km60r01b1w2f8085m")))) |
aae03c48 AE |
524 | (build-system gnu-build-system) |
525 | (native-inputs | |
526 | `(("doxygen" ,doxygen) | |
527 | ("graphviz" ,graphviz) | |
528 | ("perl" ,perl))) | |
529 | (inputs | |
530 | `(("cddlib" ,cddlib) | |
531 | ("gmp" ,gmp) | |
532 | ("flint" ,flint) | |
533 | ("mpfr" ,mpfr) | |
534 | ("ntl" ,ntl) | |
535 | ("python" ,python-2) | |
536 | ("readline" ,readline))) | |
537 | (arguments | |
538 | `(#:configure-flags | |
539 | (list (string-append "--with-ntl=" | |
540 | (assoc-ref %build-inputs "ntl"))))) | |
541 | (synopsis "Computer algebra system for polynomial computations") | |
542 | (description | |
543 | "Singular is a computer algebra system for polynomial computations, | |
544 | with special emphasis on commutative and non-commutative algebra, algebraic | |
545 | geometry and singularity theory.") | |
546 | ;; Singular itself is dual licensed gpl2 or gpl3, but some of the | |
547 | ;; libraries with which it links are licensed under lgpl3+, so the | |
548 | ;; combined work becomes gpl3. See COPYING in the source code. | |
549 | (license license:gpl3) | |
550 | (home-page "http://www.singular.uni-kl.de/index.php"))) | |
551 | ||
57c9c349 AE |
552 | (define-public gmp-ecm |
553 | (package | |
554 | (name "gmp-ecm") | |
7d15cf17 | 555 | (version "7.0.4") |
57c9c349 | 556 | (source (origin |
7d15cf17 TGR |
557 | (method url-fetch) |
558 | ;; Use the ‘Latest version’ link for a stable URI across releases. | |
559 | (uri (string-append "https://gforge.inria.fr/frs/download.php/" | |
560 | "latestfile/160/ecm-" version ".tar.gz")) | |
561 | (sha256 (base32 | |
562 | "0hxs24c2m3mh0nq1zz63z3sb7dhy1rilg2s1igwwcb26x3pb7xqc")))) | |
57c9c349 AE |
563 | (build-system gnu-build-system) |
564 | (inputs | |
565 | `(("gmp" ,gmp))) | |
566 | (arguments | |
567 | `(#:configure-flags '("--enable-shared" | |
568 | ;; Disable specific assembly routines, which depend | |
569 | ;; on the subarchitecture of the build machine, | |
570 | ;; and use gmp instead. | |
571 | "--disable-asm-redc"))) | |
572 | (synopsis "Integer factorization library using the elliptic curve method") | |
573 | (description | |
574 | "GMP-ECM factors integers using the elliptic curve method (ECM) as well | |
575 | as the P-1 and P+1 algorithms. It provides a library and a stand-alone | |
576 | binary.") | |
577 | ;; Most files are under lgpl3+, but some are under gpl3+ or gpl2+, | |
578 | ;; so the combined work is under gpl3+. | |
579 | (license license:gpl3+) | |
580 | (home-page "http://ecm.gforge.inria.fr/"))) | |
581 | ||
ed9f9a77 LC |
582 | (define-public bc |
583 | (package | |
584 | (name "bc") | |
f71f29ca | 585 | (version "1.07.1") |
ed9f9a77 LC |
586 | (source (origin |
587 | (method url-fetch) | |
588 | (uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz")) | |
589 | (sha256 | |
590 | (base32 | |
f71f29ca | 591 | "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2")))) |
ed9f9a77 | 592 | (build-system gnu-build-system) |
f71f29ca MB |
593 | (native-inputs |
594 | `(("ed" ,ed) | |
595 | ("flex" ,flex) | |
596 | ("texinfo" ,texinfo))) | |
ed9f9a77 | 597 | (arguments |
f71f29ca | 598 | '(#:configure-flags |
f0bacad6 | 599 | (list "--with-readline"))) |
6fd52309 | 600 | (home-page "https://www.gnu.org/software/bc/") |
f50d2669 | 601 | (synopsis "Arbitrary precision numeric processing language") |
ed9f9a77 | 602 | (description |
a22dc0c4 LC |
603 | "bc is an arbitrary precision numeric processing language. It includes |
604 | an interactive environment for evaluating mathematical statements. Its | |
605 | syntax is similar to that of C, so basic usage is familiar. It also includes | |
606 | \"dc\", a reverse-polish calculator.") | |
9f51293c | 607 | (license license:gpl2+))) |
37e6cdcd | 608 | |
2a9b10c7 RW |
609 | ;; The original kiss-fft does not have a complete build system and does not |
610 | ;; build any shared libraries. This is a fork used by Extempore. | |
611 | (define-public kiss-fft-for-extempore | |
612 | (package | |
613 | (name "kiss-fft-for-extempore") | |
614 | (version "1.3.0") | |
615 | (source (origin | |
9774fac4 RW |
616 | (method git-fetch) |
617 | (uri (git-reference | |
618 | (url "https://github.com/extemporelang/kiss_fft.git") | |
619 | (commit version))) | |
620 | (file-name (git-file-name name version)) | |
2a9b10c7 RW |
621 | (sha256 |
622 | (base32 | |
9774fac4 | 623 | "0jasbmqy4wkqrqx3w64s1dfmj34875xmsl72mb26aa4hpyn14bi2")))) |
2a9b10c7 RW |
624 | (build-system cmake-build-system) |
625 | (arguments `(#:tests? #f)) ; no tests included | |
39162ee4 RW |
626 | ;; Extempore refuses to build on architectures other than x86_64 |
627 | (supported-systems '("x86_64-linux")) | |
2a9b10c7 RW |
628 | (home-page "https://github.com/extemporelang/kiss_fft") |
629 | (synopsis "Mixed-radix Fast Fourier Transform") | |
630 | (description | |
631 | "Kiss FFT attempts to be a reasonably efficient, moderately useful FFT | |
632 | that can use fixed or floating data types and can easily be incorporated into | |
633 | a C program.") | |
634 | (license license:bsd-3))) | |
635 | ||
37e6cdcd LC |
636 | (define-public fftw |
637 | (package | |
638 | (name "fftw") | |
bdb74478 | 639 | (version "3.3.8") |
37e6cdcd LC |
640 | (source (origin |
641 | (method url-fetch) | |
642 | (uri (string-append "ftp://ftp.fftw.org/pub/fftw/fftw-" | |
643 | version".tar.gz")) | |
644 | (sha256 | |
645 | (base32 | |
bdb74478 | 646 | "00z3k8fq561wq2khssqg0kallk0504dzlx989x3vvicjdqpjc4v1")))) |
37e6cdcd LC |
647 | (build-system gnu-build-system) |
648 | (arguments | |
65bb2279 | 649 | `(#:configure-flags |
69d5909e MW |
650 | '("--enable-shared" "--enable-openmp" "--enable-threads" |
651 | ,@(let ((system (or (%current-target-system) (%current-system)))) | |
652 | ;; Enable SIMD extensions for codelets. See details at: | |
653 | ;; <http://fftw.org/fftw3_doc/Installation-on-Unix.html>. | |
654 | (cond | |
655 | ((string-prefix? "x86_64" system) | |
656 | '("--enable-sse2" "--enable-avx" "--enable-avx2" | |
657 | "--enable-avx512" "--enable-avx-128-fma")) | |
658 | ((string-prefix? "i686" system) | |
659 | '("--enable-sse2")) | |
660 | ((string-prefix? "aarch64" system) | |
661 | ;; Note that fftw supports NEON on 32-bit ARM only when | |
662 | ;; compiled for single-precision. | |
663 | '("--enable-neon")) | |
664 | (else | |
665 | '()))) | |
65bb2279 EB |
666 | ;; By default '-mtune=native' is used. However, that may cause the |
667 | ;; use of ISA extensions (e.g. AVX) that are not necessarily | |
668 | ;; available on the user's machine when that package is built on a | |
669 | ;; different machine. | |
670 | "ax_cv_c_flags__mtune_native=no"))) | |
37e6cdcd LC |
671 | (native-inputs `(("perl" ,perl))) |
672 | (home-page "http://fftw.org") | |
673 | (synopsis "Computing the discrete Fourier transform") | |
674 | (description | |
675 | "FFTW is a C subroutine library for computing the discrete Fourier | |
676 | transform (DFT) in one or more dimensions, of arbitrary input size, and of | |
677 | both real and complex data (as well as of even/odd data---i.e. the discrete | |
678 | cosine/ sine transforms or DCT/DST).") | |
9f51293c | 679 | (license license:gpl2+))) |
7569c5cb EB |
680 | |
681 | (define-public fftwf | |
682 | (package (inherit fftw) | |
683 | (name "fftwf") | |
684 | (arguments | |
685 | (substitute-keyword-arguments (package-arguments fftw) | |
69d5909e MW |
686 | ((#:configure-flags fftw-configure-flags) |
687 | `(cons* "--enable-single" | |
688 | ,@(if (string-prefix? "arm" (or (%current-target-system) | |
689 | (%current-system))) | |
690 | ;; fftw supports NEON on 32-bit ARM only when compiled | |
691 | ;; for single-precision, so add it here. | |
692 | '("--enable-neon") | |
693 | '()) | |
694 | ,fftw-configure-flags)))) | |
7569c5cb EB |
695 | (description |
696 | (string-append (package-description fftw) | |
697 | " Single-precision version.")))) | |
e5c66f8c EB |
698 | |
699 | (define-public fftw-openmpi | |
700 | (package (inherit fftw) | |
701 | (name "fftw-openmpi") | |
702 | (inputs | |
703 | `(("openmpi" ,openmpi) | |
704 | ,@(package-inputs fftw))) | |
705 | (arguments | |
706 | (substitute-keyword-arguments (package-arguments fftw) | |
707 | ((#:configure-flags cf) | |
eb6785cf EB |
708 | `(cons "--enable-mpi" ,cf)) |
709 | ((#:phases phases '%standard-phases) | |
710 | `(modify-phases ,phases | |
711 | (add-before 'check 'mpi-setup | |
712 | ,%openmpi-setup))))) | |
e5c66f8c EB |
713 | (description |
714 | (string-append (package-description fftw) | |
715 | " With OpenMPI parallelism support.")))) | |
8f4b1dfb | 716 | |
c8d99608 RW |
717 | (define-public java-la4j |
718 | (package | |
719 | (name "java-la4j") | |
720 | (version "0.6.0") | |
721 | (source (origin | |
722 | (method git-fetch) | |
723 | (uri (git-reference | |
724 | (url "https://github.com/vkostyukov/la4j.git") | |
725 | (commit version))) | |
726 | (file-name (string-append name "-" version "-checkout")) | |
727 | (sha256 | |
728 | (base32 | |
729 | "1qir8dr978cfvz9k12m2kbdwpyf6cqdf1d0ilb7lnkhbgq5i53w3")))) | |
730 | (build-system ant-build-system) | |
731 | (arguments | |
732 | `(#:jar-name "la4j.jar" | |
733 | #:jdk ,icedtea-8 | |
734 | #:test-exclude (list "**/Abstract*.java" | |
735 | "**/MatrixTest.java" | |
736 | "**/DenseMatrixTest.java" | |
737 | "**/SparseMatrixTest.java" | |
738 | "**/VectorTest.java" | |
739 | "**/SparseVectorTest.java" | |
740 | "**/DenseVectorTest.java"))) | |
741 | (native-inputs | |
742 | `(("java-junit" ,java-junit) | |
743 | ("java-hamcrest-core" ,java-hamcrest-core))) | |
744 | (home-page "http://la4j.org/") | |
745 | (synopsis "Java library that provides Linear Algebra primitives and algorithms") | |
746 | (description "The la4j library is a Java library that provides Linear | |
747 | Algebra primitives (matrices and vectors) and algorithms. The key features of | |
748 | the la4j library are: | |
749 | ||
750 | @itemize | |
751 | @item No dependencies and tiny size | |
752 | @item Fluent object-oriented/functional API | |
753 | @item Sparse (CRS, CCS) and dense (1D/2D arrays) matrices | |
754 | @item Linear systems solving (Gaussian, Jacobi, Zeidel, Square Root, Sweep and other) | |
755 | @item Matrices decomposition (Eigenvalues/Eigenvectors, SVD, QR, LU, Cholesky and other) | |
756 | @item MatrixMarket/CSV IO formats support for matrices and vectors | |
757 | @end itemize\n") | |
758 | (license license:asl2.0))) | |
759 | ||
24074b0b RW |
760 | (define-public java-jlargearrays |
761 | (package | |
762 | (name "java-jlargearrays") | |
763 | (version "1.6") | |
764 | (source (origin | |
765 | (method url-fetch) | |
766 | (uri (string-append "http://search.maven.org/remotecontent?" | |
767 | "filepath=pl/edu/icm/JLargeArrays/" | |
768 | version "/JLargeArrays-" version | |
769 | "-sources.jar")) | |
770 | (file-name (string-append name "-" version ".jar")) | |
771 | (sha256 | |
772 | (base32 | |
773 | "0v05iphpxbjnd7f4jf1rlqq3m8hslhcm0imdbsgxr20pi3xkaf2a")))) | |
774 | (build-system ant-build-system) | |
775 | (arguments | |
776 | `(#:jar-name "jlargearrays.jar" | |
777 | #:tests? #f ; tests are not included in the release archive | |
778 | #:jdk ,icedtea-8)) | |
779 | (propagated-inputs | |
780 | `(("java-commons-math3" ,java-commons-math3))) | |
781 | (home-page "https://gitlab.com/ICM-VisLab/JLargeArrays") | |
782 | (synopsis "Library of one-dimensional arrays that can store up to 263 elements") | |
783 | (description "JLargeArrays is a Java library of one-dimensional arrays | |
784 | that can store up to 263 elements.") | |
785 | (license license:bsd-2))) | |
786 | ||
4e92911c RW |
787 | (define-public java-jtransforms |
788 | (package | |
789 | (name "java-jtransforms") | |
790 | (version "3.1") | |
791 | (source (origin | |
792 | (method url-fetch) | |
793 | (uri (string-append "http://search.maven.org/remotecontent?" | |
794 | "filepath=com/github/wendykierp/JTransforms/" | |
795 | version "/JTransforms-" version "-sources.jar")) | |
796 | (sha256 | |
797 | (base32 | |
798 | "1haw5m8shv5srgcpwkl853dz8bv6h90bzlhcps6mdpb4cixjirsg")))) | |
799 | (build-system ant-build-system) | |
800 | (arguments | |
801 | `(#:jar-name "jtransforms.jar" | |
802 | #:tests? #f ; tests are not included in the release archive | |
803 | #:jdk ,icedtea-8)) | |
804 | (propagated-inputs | |
805 | `(("java-commons-math3" ,java-commons-math3) | |
806 | ("java-jlargearrays" ,java-jlargearrays))) | |
807 | (home-page "https://github.com/wendykierp/JTransforms") | |
808 | (synopsis "Multithreaded FFT library written in pure Java") | |
809 | (description "JTransforms is a multithreaded FFT library written in pure | |
810 | Java. Currently, four types of transforms are available: @dfn{Discrete | |
811 | Fourier Transform} (DFT), @dfn{Discrete Cosine Transform} (DCT), @dfn{Discrete | |
812 | Sine Transform} (DST) and @dfn{Discrete Hartley Transform} (DHT).") | |
813 | (license license:bsd-2))) | |
814 | ||
8f4b1dfb LC |
815 | (define-public eigen |
816 | (package | |
817 | (name "eigen") | |
8cd80a4b | 818 | (version "3.3.5") |
8f4b1dfb LC |
819 | (source (origin |
820 | (method url-fetch) | |
821 | (uri (string-append "https://bitbucket.org/eigen/eigen/get/" | |
9b268f12 | 822 | version ".tar.bz2")) |
8f4b1dfb LC |
823 | (sha256 |
824 | (base32 | |
8cd80a4b | 825 | "1qh3yrwn78ms5yhwbpl5wvblk4gbz02cacdygxylr7i9xbrvylkk")) |
2abcc935 | 826 | (file-name (string-append name "-" version ".tar.bz2")) |
8f4b1dfb LC |
827 | (modules '((guix build utils))) |
828 | (snippet | |
829 | ;; There are 3 test failures in the "unsupported" directory, | |
830 | ;; but maintainers say it's a known issue and it's unsupported | |
831 | ;; anyway, so just skip them. | |
1137d85b | 832 | '(begin |
44884a9d RW |
833 | (substitute* "unsupported/CMakeLists.txt" |
834 | (("add_subdirectory\\(test.*") | |
835 | "# Do not build the tests for unsupported features.\n")) | |
6cbee49d | 836 | #t)))) |
8f4b1dfb LC |
837 | (build-system cmake-build-system) |
838 | (arguments | |
839 | '(;; Turn off debugging symbols to save space. | |
840 | #:build-type "Release" | |
841 | ||
354f4fe2 | 842 | #:phases (modify-phases %standard-phases |
ef8742ea | 843 | (replace 'check |
354f4fe2 | 844 | (lambda _ |
354f4fe2 LC |
845 | (let* ((cores (parallel-job-count)) |
846 | (dash-j (format #f "-j~a" cores))) | |
1137d85b | 847 | (setenv "EIGEN_SEED" "1") ;for reproducibility |
ef8742ea LC |
848 | ;; First build the tests, in parallel. See |
849 | ;; <http://eigen.tuxfamily.org/index.php?title=Tests>. | |
fbe9c80f | 850 | (invoke "make" "buildtests" dash-j) |
8f4b1dfb | 851 | |
fbe9c80f TGR |
852 | ;; Then run 'CTest' with -V so we get more |
853 | ;; details upon failure. | |
854 | (invoke "ctest" "-V" dash-j))))))) | |
eeb8b0e6 | 855 | (home-page "https://eigen.tuxfamily.org") |
8f4b1dfb LC |
856 | (synopsis "C++ template library for linear algebra") |
857 | (description | |
858 | "Eigen is a C++ template library for linear algebra: matrices, vectors, | |
859 | numerical solvers, and related algorithms. It provides an elegant API based | |
860 | on \"expression templates\". It is versatile: it supports all matrix sizes, | |
861 | all standard numeric types, various matrix decompositions and geometry | |
862 | features, and more.") | |
863 | ||
864 | ;; Most of the code is MPLv2, with a few files under LGPLv2.1+ or BSD-3. | |
865 | ;; See 'COPYING.README' for details. | |
9f51293c | 866 | (license license:mpl2.0))) |
70770b93 | 867 | |
697eb65d RW |
868 | (define-public eigen-for-tensorflow |
869 | (let ((changeset "fd6845384b86") | |
870 | (revision "1")) | |
871 | (package (inherit eigen) | |
872 | (name "eigen-for-tensorflow") | |
873 | (version (string-append "3.3.5-" revision "." changeset)) | |
874 | (source (origin | |
875 | (method hg-fetch) | |
876 | (uri (hg-reference | |
877 | (url "https://bitbucket.org/eigen/eigen") | |
878 | (changeset changeset))) | |
879 | (sha256 | |
880 | (base32 | |
881 | "12cwgah63wqwb66xji048hcxc1z5zjg8a7701zlia5zbilnnk1n5")) | |
882 | (file-name (string-append name "-" version "-checkout")) | |
883 | (modules '((guix build utils))) | |
884 | (snippet | |
885 | ;; There are 3 test failures in the "unsupported" directory, | |
886 | ;; but maintainers say it's a known issue and it's unsupported | |
887 | ;; anyway, so just skip them. | |
888 | '(begin | |
889 | (substitute* "unsupported/CMakeLists.txt" | |
890 | (("add_subdirectory\\(test.*") | |
891 | "# Do not build the tests for unsupported features.\n")) | |
892 | #t))))))) | |
893 | ||
70770b93 FT |
894 | (define-public xtensor |
895 | (package | |
896 | (name "xtensor") | |
98080807 | 897 | (version "0.20.5") |
70770b93 | 898 | (source (origin |
e1ecaa83 KK |
899 | (method git-fetch) |
900 | (uri (git-reference | |
901 | (url "https://github.com/QuantStack/xtensor.git") | |
902 | (commit version))) | |
70770b93 FT |
903 | (sha256 |
904 | (base32 | |
98080807 | 905 | "0kkc4ar7p2d94jnclmrh46dwv7ldy9lx630vm9gci3pp4hnhbj9f")) |
e1ecaa83 | 906 | (file-name (git-file-name name version)))) |
70770b93 FT |
907 | (build-system cmake-build-system) |
908 | (native-inputs | |
909 | `(("googletest" ,googletest) | |
910 | ("xtl" ,xtl))) | |
911 | (arguments | |
912 | `(#:configure-flags | |
913 | '("-DBUILD_TESTS=ON") | |
914 | #:test-target "xtest")) | |
915 | (home-page "http://quantstack.net/xtensor") | |
916 | (synopsis "C++ tensors with broadcasting and lazy computing") | |
917 | (description "xtensor is a C++ library meant for numerical analysis with | |
918 | multi-dimensional array expressions. | |
919 | ||
920 | xtensor provides: | |
921 | @itemize | |
922 | @item an extensible expression system enabling lazy broadcasting. | |
923 | @item an API following the idioms of the C++ standard library. | |
924 | @item tools to manipulate array expressions and build upon xtensor. | |
925 | @end itemize") | |
926 | (license license:bsd-3))) | |
3f074a21 AE |
927 | |
928 | (define-public gap | |
929 | (package | |
930 | (name "gap") | |
931 | (version "4.10.0") | |
932 | (source | |
933 | (origin | |
934 | (method url-fetch) | |
935 | (uri (string-append "https://www.gap-system.org/pub/gap/gap-" | |
936 | (version-major+minor version) | |
937 | "/tar.bz2/gap-" | |
938 | version | |
939 | ".tar.bz2")) | |
940 | (sha256 | |
941 | (base32 | |
942 | "1dmb8v4p7j1nnf7sx8sg54b49yln36bi9acwp7w1d3a1nxj17ird")) | |
943 | (modules '((guix build utils) (ice-9 ftw) (srfi srfi-1))) | |
944 | (snippet | |
945 | '(begin | |
946 | ;; Delete the external gmp and zlib libraries | |
947 | ;; and a subdirectory not needed for our build. | |
948 | (for-each delete-file-recursively | |
949 | '("extern" "hpcgap")) | |
950 | ;; Delete a failing test. | |
951 | ;; FIXME: This might be fixed in the next release, see | |
952 | ;; https://github.com/gap-system/gap/issues/3292 | |
953 | (delete-file "tst/testinstall/dir.tst") | |
954 | ;; Delete all packages except for a fixed list. | |
955 | (with-directory-excursion "pkg" | |
956 | (for-each delete-file-recursively | |
957 | (lset-difference string=? (scandir ".") | |
958 | '("." ".." | |
959 | ;; Necessary packages. | |
960 | "GAPDoc-1.6.2" | |
961 | "primgrp-3.3.2" | |
962 | "SmallGrp-1.3" ; artistic2.0 | |
963 | "transgrp" ; artistic2.0 for data, | |
964 | ; gpl2 or gpl3 for code | |
965 | ;; Recommanded package. | |
966 | "io-4.5.4" ; gpl3+ | |
967 | ;; Optional packages, searched for at start, | |
968 | ;; and their depedencies. | |
969 | "alnuth-3.1.0" | |
970 | "AutoDoc-2018.09.20" | |
971 | "autpgrp-1.10" | |
972 | "crisp-1.4.4" ; bsd-2 | |
973 | ; "ctbllib" ; no explicit license, drop | |
974 | "FactInt-1.6.2" | |
975 | "fga" | |
976 | "irredsol-1.4" ; bsd-2 | |
977 | "laguna-3.9.0" | |
978 | "polenta-1.3.8" | |
979 | "polycyclic-2.14" | |
980 | "radiroot-2.8" | |
981 | "resclasses-4.7.1" | |
982 | "sophus-1.24" | |
983 | ; "tomlib-1.2.7" ; no explicit license, drop | |
984 | "utils-0.59")))) | |
985 | #t)))) | |
986 | (build-system gnu-build-system) | |
987 | (inputs | |
988 | `(("gmp" ,gmp) | |
989 | ("zlib" ,zlib))) | |
990 | (arguments | |
991 | `(#:phases | |
992 | (modify-phases %standard-phases | |
993 | (add-after 'build 'build-packages | |
994 | ;; Compile all packages that have not been deleted by the | |
995 | ;; code snippet above. | |
996 | (lambda _ | |
997 | (setenv "CONFIG_SHELL" (which "bash")) | |
998 | (with-directory-excursion "pkg" | |
999 | (invoke "../bin/BuildPackages.sh") | |
1000 | #t))) | |
1001 | (add-after 'build-packages 'build-doc | |
1002 | ;; The documentation is bundled, but we create it from source. | |
1003 | (lambda _ | |
1004 | (with-directory-excursion "doc" | |
1005 | (invoke "./make_doc")) | |
1006 | #t)) | |
1007 | (replace 'check | |
1008 | (lambda _ | |
1009 | ;; "make check" is expected to appear in gap-4.10.1 | |
1010 | (invoke "./gap" "tst/testinstall.g") | |
1011 | #t)) | |
1012 | (replace 'install | |
1013 | (lambda* (#:key outputs #:allow-other-keys) | |
1014 | (let* ((out (assoc-ref outputs "out")) | |
1015 | (bin (string-append out "/bin")) | |
1016 | (prog (string-append bin "/gap")) | |
1017 | (prog-real (string-append bin "/.gap-real")) | |
1018 | (share (string-append out "/share/gap")) | |
1019 | (include (string-append out "/include/gap"))) | |
1020 | ;; Install only the gap binary; the gac compiler is left | |
1021 | ;; for maybe later. "Wrap" it in a shell script that calls | |
1022 | ;; the binary with the correct parameter. | |
1023 | (mkdir-p bin) | |
1024 | (copy-file "gap" prog-real) | |
1025 | (call-with-output-file prog | |
1026 | (lambda (port) | |
1027 | (format port | |
1028 | "#!~a~%exec ~a -l ~a \"$@\"~%" | |
1029 | (which "bash") | |
1030 | prog-real | |
1031 | share))) | |
1032 | (chmod prog #o755) | |
1033 | ;; Install the headers and the library, which are needed by | |
1034 | ;; Sage. The Makefile targets are available in gap-4.10.0, | |
1035 | ;; but planned to be removed in gap-4.10.1. | |
1036 | (invoke "make" "install-headers") | |
1037 | (invoke "make" "install-libgap") | |
1038 | (install-file "gen/config.h" include) | |
1039 | ;; Install a certain number of files and directories to | |
1040 | ;; SHARE, where the wrapped shell script expects them. | |
1041 | ;; Remove information on the build directory from sysinfo.gap. | |
1042 | (substitute* "sysinfo.gap" | |
1043 | (("GAP_BIN_DIR=\".*\"") "GAP_BIN_DIR=\"\"") | |
1044 | (("GAP_LIB_DIR=\".*\"") "GAP_LIB_DIR=\"\"") | |
1045 | (("GAP_CPPFLAGS=\".*\"") "GAP_CPPFLAGS=\"\"")) | |
1046 | (install-file "sysinfo.gap" share) | |
1047 | (copy-recursively "grp" (string-append share "/grp")) | |
1048 | (copy-recursively "pkg" (string-append share "/pkg")) | |
1049 | ;; The following is not the C library libgap.so, but a | |
1050 | ;; library of GAP code. | |
1051 | (copy-recursively "lib" (string-append share "/lib")) | |
1052 | ;; The gap binary looks for documentation inside SHARE. | |
1053 | (copy-recursively "doc" (string-append share "/doc"))) | |
1054 | #t))))) | |
1055 | (home-page "https://www.gap-system.org/") | |
1056 | (synopsis | |
1057 | "System for computational group theory") | |
1058 | (description | |
1059 | "GAP is a system for computational discrete algebra, with particular | |
1060 | emphasis on computational group theory. It provides a programming language, | |
1061 | a library of thousands of functions implementing algebraic algorithms | |
1062 | written in the GAP language as well as large data libraries of algebraic | |
1063 | objects.") | |
1064 | ;; Some packages have different licenses (effectively forcing the | |
1065 | ;; combined work to be licensed as gpl3+); if this is the case, this | |
1066 | ;; is mentioned above next to their name. | |
1067 | ;; Some packages have no license mentioned explicitly; supposedly this | |
1068 | ;; means that the gpl2+ licence of GAP itself applies, but to be on the | |
1069 | ;; safe side, we drop them for now. | |
1070 | (license license:gpl2+))) |