gnu: rnp: Improve package style.

* gnu/package/openpgp.scm (rnp)[phases]{fixes}: Rename fixes to patch-tests, use
search-input-file, and remove trailing #t.
{check}: Respect tests?
[native-inputs]: Remove labels.
[home-page]: Update URL.

gnu: rnp: Update to 0.16.2.

* gnu/packages/openpgp.scm (rnp): Update to 0.16.2.
[file-name]: Use git-file-name.
[patches]: Remove.
[arguments]: Disable downloading testing inputs in #:configure-flags.
[phases]{fixes}: Remove functionality that is no longer needed.
[native-inputs]: Replace googletest-source with googletest, remove
python2.
* gnu/packages/patches/rnp-add-version.cmake.patch,
* gnu/packages/patches/rnp-disable-ruby-rnp-tests.patch,
* gnu/packages/patches/rnp-unbundle-googletest.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.

gnu: emacs-bash-completion: Update to 3.1.1-0.796a806.

* gnu/packages/emacs-xyz.scm (emacs-bash-completion): Update to 3.1.1-0.796a806.
[phases]: Delete make-git-checkout-writable phase.

gnu: sdrangel: Update to 7.10.0.

* gnu/packages/radio.scm (sdrangel): Update to 7.10.0.

gnu: csdr: Update to 0.18.1.

* gnu/packages/radio.scm (csdr): Update to 0.18.1.

gnu: xmrig: Update to 6.19.0.

* gnu/packages/finance.scm (xmrig): Update to 6.19.0.

gnu: monero-gui: Update to 0.18.2.0.

* gnu/packages/finance.scm (monero-gui): Update to 0.18.2.0.

gnu: p2pool: Update to 3.1.

* gnu/packages/finance.scm (p2pool): Update to 3.1.
  [arguments]: Add 'configure-flags". Add custom 'check' phase and enable
  tests.

gnu: monero: Update to 0.18.2.0.

* gnu/packages/finance.scm (monero): Update to 0.18.2.0.

gnu: Add emacs-motif.

* gnu/packages/text-editors.scm (emacs-motif): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add ghc-hs-conllu.

* gnu/packages/haskell-xyz (ghc-hs-conllu): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: font-google-noto-emoji: Install correct license file.

* gnu/packages/fonts.scm (font-google-noto-emoji)[arguments]<#:phases>: Add
"enter-font-directory" phase; remove now-superfluous prefix from paths in
"remove-unsupported" phase.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add font-apl2741-unicode.

* gnu/packages/apl.scm (font-apl2741-unicode): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: icecat: Remove unsupported --disable-eme option on aarch64.

* gnu/packages/gnuzilla.scm (icecat): Remove unsupported --disable-eme option
on aarch64.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add python-pypresence.

* gnu/packages/messaging.scm (python-pypresence): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add flat-remix-gnome-theme.

* gnu/packages/gnome-xyz.scm (flat-remix-gnome-theme): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add flat-remix-gtk-theme.

* gnu/packages/gnome-xyz.scm (flat-remix-gtk-theme): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add flat-remix-icon-theme.

* gnu/packages/gnome-xyz.scm (flat-remix-icon-theme): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add python-pixelmatch.

* gnu/packages/python-xyz.scm (python-pixelmatch): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add python-pyee.

* gnu/packages/python-xyz.scm (python-pyee): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add r-rmumps.

* gnu/packages/cran.scm (r-rmumps): New variable.

gnu: Add r-pma.

* gnu/packages/cran.scm (r-pma): New variable.

gnu: Add r-p2data.

* gnu/packages/bioinformatics.scm (r-p2data): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>

gnu: Add r-conospanel.

* gnu/packages/bioinformatics.scm (r-conospanel): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>

gnu: Add r-conos.

* gnu/packages/bioconductor.scm (r-conos): New variable.

gnu: Add r-pagoda2.

* gnu/packages/cran.scm (r-pagoda2): New variable.

gnu: Add r-dendsort.

* gnu/packages/cran.scm (r-dendsort): New variable.

gnu: Add r-drat.

* gnu/packages/cran.scm (r-drat): New variable.

gnu: Add r-leidenalg.

* gnu/packages/cran.scm (r-leidenalg): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>

gnu: Add r-sccore.

* gnu/packages/cran.scm (r-sccore): New variable.

gnu: Add r-n2r.

* gnu/packages/cran.scm (r-n2r): New variable.

gnu: Add r-rcppspdlog.

* gnu/packages/cran.scm (r-rcppspdlog): New variable.

gnu: Add r-simplermarkdown.

* gnu/packages/cran.scm (r-simplermarkdown): New variable.

gnu: Add r-sitar.

* gnu/packages/cran.scm (r-sitar): New variable.

gnu: aspell: fix cross-compile.

* gnu/packages/aspell.scm (aspell): fix cross-compile.
[inputs]: move perl to ...
[native-inputs]: here.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: thunar: Update to 4.18.4.

* gnu/packages/xfce.scm (thunar): Update to 4.18.4.

gnu: herbstluftwm: Enable Xcursor support.

* gnu/packages/wm.scm (herbstluftwm)[inputs]: Add libxcursor.
[arguments]: Set 'LDFLAGS' to '-lXcursor'.

gnu: herbstluftwm: Update to 0.9.5.

* gnu/packages/wm.scm (herbstluftwm): Update to 0.9.5.

gnu: sugar-desktop-configuration: Allow specification of activities.

* gnu/services/desktop.scm (<sugar-desktop-configuration>): Add new fields for
activities and gobject-introspection.
(sugar-gobject-introspection, sugar-activities): New procedures.
(sugar-desktop-service-type): Install packages for activities and
gobject-introspection alongside the sugar package.
* doc/guix.texi (Desktop Services): Document changes.

gnu: Add sugar-jukebox-activity.

* gnu/packages/sugar.scm (sugar-jukebox-activity): New variable.

gnu: sugar: Augment GI_TYPELIB_PATH, don't replace it.

This is important so that the typelib files of libraries that may have been
propagated by Sugar activities are visible when launching the activities
via sugar-toolkit-gtk3's "sugar-activity3" tool.

Activities propagate their needed gobject introspection libraries; when
installed to the system profile these libraries are available to the Sugar
launchers.

* gnu/packages/sugar.scm (sugar)[arguments]: Do not replace GI_TYPELIB_PATH
but augment it.

gnu: sugar-toolkit-gtk3: Extend GI_TYPELIB_PATH, don't replace it.

This is convenient in case typelib files are needed by activities at runtime
that are not available at build time.

* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[arguments]: Extend
GI_TYPELIB_PATH when wrapping.

gnu: xmonad: Re-add xmonad.desktop file.

* gnu/packages/wm.scm (xmonad)[arguments]: Add 'install-xsession phase
  that was removed in previous automated update.

Fixes: <https://issues.guix.gnu.org/61872>
Signed-off-by: Lars-Dominik Braun <lars@6xq.net>

gnu: qutebrowser: Update to 2.5.3.

* gnu/packages/web-browsers.scm (qutebrowser): Update to 2.5.3.

gnu: sugar: Add missing import.

This is a follow-up to commit 03c5b8933dd84ce3ab108ab2e56776181517ad7d.

* gnu/packages/sugar.scm: Add missing import of (gnu packages bash).

gnu: sugar-toolkit-gtk3: Add bash-minimal to inputs.

This is needed due to the use of wrap-program.

* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[inputs]: Add bash-minimal.

gnu: sugar-datastore: Add bash-minimal to inputs.

This is needed due to the use of wrap-program.

* gnu/packages/sugar.scm (sugar-datastore)[inputs]: Add bash-minimal.

gnu: sugar: Add bash-minimal to inputs.

This is needed when using wrap-program.

* gnu/packages/sugar.scm (sugar)[inputs]: Add bash-minimal.

services: Add sugar-desktop-service-type.

* gnu/services/desktop.scm (sugar-desktop-service-type): New variable.
(sugar-polkit-settings, sugar-desktop-configuration,
make-sugar-desktop-configuration, sugar-desktop-configuration?,
sugar-package): New procedures.
(<sugar-desktop-configuration>): New record.
* doc/guix.texi (Desktop Services): Document it.

gnu: Add sugar-browse-activity.

* gnu/packages/sugar.scm (sugar-browse-activity): New variable.

gnu: sugar-help-activity: Build English HTML.

* gnu/packages/sugar.scm (sugar-help-activity)[arguments]: Replace 'build
phase to generate HTML files.
[native-inputs]: Add python-sphinx.

gnu: sugar-toolkit-gtk3: Include output directory in GI_TYPELIB_PATH.

* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[arguments]: Include package
output directory in search path for GI_TYPELIB_PATH.

gnu: sugar-typing-turtle-activity: Add setxkbmap to inputs.

* gnu/packages/sugar.scm (sugar-typing-turtle-activity)[inputs]: Add
setxkbmap.
[arguments]: Patch invocation of setxkbmap.

gnu: ghc-9.2: Increase max-silent-time.

Times out on i686 CI, but not locally.

* gnu/packages/haskell.scm (ghc-9.2)[properties]: Add max-silent-time.

gnu: emacs-eat: Update to 0.6.

* gnu/packages/emacs-xyz.scm (emacs-eat): Update to 0.6.

gnu: emacs-vertico: Generate info from README.org.

* gnu/packages/emacs-xyz.scm (emacs-vertico)[arguments]: Migrate to gexps,
generate info from README.org.

gnu: emacs-marginalia: Generate info from README.org.

* gnu/packages/emacs-xyz.scm (emacs-marginalia)[native-inputs]: Add texinfo.
[arguments]: Generate info from README.org.

gnu: emacs-consult: Generate info from README.org.

* gnu/packages/emacs-xyz.scm (emacs-consult)[native-inputs]: Add texinfo.
[arguments]: Generate info from README.org.

gnu: emacs-embark: Generate info from README.org.

* gnu/packages/emacs-xyz.scm (emacs-embark)[native-inputs]: Add texinfo.
[arguments]: Generate info from README.org.

gnu: emacs-cape: Generate info from README.org.

* gnu/packages/emacs-xyz.scm (emacs-cape)[native-inputs]: Add texinfo.
[arguments]: Generate info from README.org.

gnu: emacs-corfu: Generate info from README.org.

* gnu/packages/emacs-xyz.scm (emacs-corfu)[native-inputs]: Add texinfo.
[arguments]: Migrate to gexps, generate info from README.org.

gnu: Add barectf.

* gnu/packages/instrumentation.scm (barectf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: leptonica: Update to 1.83.1.

* gnu/packages/image.scm (leptonica): Update to 1.83.1.
[arguments]<#:phases>: Update file name in "provide-absolute-giflib-reference"
phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: leptonica: Use new package style.

* gnu/packages/image.scm (leptonica)[inputs]: Remove labels.
[arguments]<#:phases>: Use gexps; use "this-package-input" to locate package
input; do not explicitly return #t from phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: hyfetch: Update to 1.4.7.

* gnu/packages/admin.scm (hyfetch): Update to 1.4.7.
* gnu/packages/patches/hyfetch-fix-generator-script-quotation-escaping.patch,
* gnu/packages/patches/hyfetch-remove-old-catchy-os-py.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

ui: 'display-hint' quotes extra arguments for Texinfo.

Fixes <https://issues.guix.gnu.org/61201>.

Previously, common practice was to splice arbitrary strings (user names,
file names, etc.) into Texinfo snippets passed to 'display-hint'.  This
is unsafe in the general case because at signs and braces need to be
escaped to produced valid Texinfo.  This commit addresses that.

* guix/ui.scm (texinfo-quote): New procedure.
(display-hint): When ARGUMENTS is non-empty, pass it to 'texinfo-quote'
and call 'format'.
(report-unbound-variable-error, check-module-matches-file)
(display-collision-resolution-hint, run-guix-command): Remove explicit
'format' call; pass 'format' arguments as extra arguments to 'display-hint'.
* gnu/services/monitoring.scm (zabbix-front-end-config): Likewise.
* guix/scripts.scm (warn-about-disk-space): Likewise.
* guix/scripts/build.scm (%standard-cross-build-options)
(%standard-native-build-options): Likewise.
* guix/scripts/describe.scm (display-checkout-info): Likewise.
* guix/scripts/environment.scm (suggest-command-name): Likewise.
* guix/scripts/home.scm (process-command): Likewise.
* guix/scripts/home/edit.scm (service-type-not-found): Likewise.
* guix/scripts/import.scm (guix-import): Likewise.
* guix/scripts/package.scm (display-search-path-hint): Likewise.
* guix/scripts/pull.scm (build-and-install): Likewise.
* guix/scripts/shell.scm (auto-detect-manifest): Likewise.
* guix/scripts/system.scm (check-file-system-availability): Likewise.
(guix-system): Likewise.
* guix/scripts/system/edit.scm (service-type-not-found): Likewise.
* guix/status.scm (print-build-event): Likewise.

pack: Adjust shell tests to read-only tarball root.

Fixes <https://issues.guix.gnu.org/61853>.

Fixes a regression introduced in
68380db4c40a2ee1156349a87254fd7b1f1a52d5, whereby the tarball's root
entry is now read-only, due to the creation of "profile-directory" in
the store.

* tests/guix-pack.sh: Remove and recreate $test_directory before
transformation option test.
* tests/guix-pack-relocatable.sh: Add "chmod +w $test_directory" lines
before attempts to write to it.

gnu: sugar-toolkit-gtk3: Propagate missing inputs.

* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[propagated-inputs]: Add
telepathy-glib and webkitgtk-with-libsoup2.

gnu: opencl-headers, opencl-clhpp and opencl-icd-loader: Update to 2023.02.06

These packages should be updated together.

* gnu/packages/opencl.scm (opencl-clhpp): Update to 2023.02.06.
[arguments]: Add configure flag to disable CTest building that cause errors as
tests are meant to be disabled.
(opencl-headers): Update to 2023.02.06.
(opencl-icd-loader): Update to 2023.02.06.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: parallel: Update to 20230222

* gnu/packages/parallel.scm (parallel): Update to 20230222

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: Add r-msa.

* gnu/packages/bioconductor.scm (r-msa): New variable.

gnu: ghc: Disable failing test on i686

Conditionally, so we don’t rebuild GHC on amd64.

* gnu/packages/haskell.scm (ghc-9.2)[arguments]: Conditionally add phase
'skip-T21694-i686.

gnu: sudo: Update to 1.9.13p2.

* gnu/packages/admin.scm (sudo): Update to 1.9.13p2.

gnu: Add sugar-typing-turtle-activity.

* gnu/packages/sugar.scm (sugar-typing-turtle-activity): New variable.

gnu: Add sugar-help-activity.

* gnu/packages/sugar.scm (sugar-help-activity): New variable.

gnu: sugar: Add missing inputs.

* gnu/packages/sugar.scm (sugar)[propagated-inputs]: Add
gsettings-desktop-schemas, telepathy-mission-control, and upower.

gnu: sugar: Propagate sugar packages.

* gnu/packages/sugar.scm (sugar)[inputs]: Move sugar-artwork and
sugar-datastore from here...
[propagated-inputs]: ...to here.

gnu: sugar: Patch brightness module.

* gnu/packages/sugar.scm (sugar)[arguments]: Fix syntax error; disable
brightness module.

gnu: sugar-toolkit-gtk3: Add missing inputs.

* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[propagated-inputs]: Add
gstreamer and gst-plugins-espeak.

gnu: sugar: Patch global location of Sugar activities.

* gnu/packages/sugar.scm (sugar)[arguments]: Update build phase
'fix-references to patch activities directory.

gnu: Add gst-plugins-espeak.

* gnu/packages/gstreamer.scm (gst-plugins-espeak): New variable.

gnu: hwloc: Skip failing test on non-x86 systems.

* gnu/packages/mpi.scm (hwloc-2)[arguments]<#:phases>: Rename
"skip-test-that-requires-/sys" phase to "skip-tests-that-require-/sys" and
expand to skip additional test requiring /sys on non-x86 systems.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: hwloc: Remove obsolete comments.

hwloc 2.x become the default with commit 8ec7ca22d3, "gnu: hwloc: Default to
2.x.".

* gnu/packages/mpi.scm (hwloc-1): Remove obsolete comment.
(hwloc-2): Remove obsolete comment.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: nvme-cli: Update to 2.3.

* gnu/packages/linux.scm (nvme-cli): Update to 2.3.
[build-system]: Switch to meson-build-system.
[arguments]: Remove stages. Build documentation.
[native-inputs]: Add pkg-config.
[inputs]: Add libnvme, json-c and zlib.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add libnvme.

* gnu/packages/linux.scm (libnvme): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: podman: Update to 4.4.1.

* gnu/packages/containers.scm (podman): Update to 4.4.1.
[native-inputs]: Replace go to go-1.19.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add font-microsoft-cascadia.

* gnu/packages/fonts.scm (font-microsoft-cascadia): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add scheme48-prescheme.

* gnu/packages/scheme.scm (scheme48-prescheme): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

scripts: repl: Extend REPL %load-path with all channels.

Fixes <https://bugs.gnu.org/61343>.
Reported by 宋文武 <iyzsong@envs.net>.

* guix/scripts/repl.scm (define-command): Before starting the REPL,
call 'current-profile' to populate (%package-module-path).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gexp: computed-file: Do not honor %guile-for-build.

This reverts commit 68775338a510f84e63657ab09242d79e726fa457.
Fixes <https://issues.guix.gnu.org/61841>.

(%guile-for-build) is a derivation for a specific system,
whereas (default-guile) is a system-independent package.  It's crucial
to preserve this distinction.

See discussion at <https://issues.guix.gnu.org/61255#29>.

* guix/gexp.scm (computed-file-compiler): Honor (default-guile),
not (%guile-for-build).

pack: Make sure tests can run without a world rebuild.

Commit 68380db4c40a2ee1156349a87254fd7b1f1a52d5 moved from
'gexp->derivation', which as a side effect, would lead tests to require
a "world rebuild"--specifically, they'd have to build (default-guile).

This was mitigated by 68775338a510f84e63657ab09242d79e726fa457, but that
change introduced another regression.

* guix/scripts/pack.scm (populate-profile-root): Define 'bootstrap?'.
Pass #:guile to 'computed-file', with a value depending on 'bootstrap?'.
* tests/pack.scm ("self-contained-tarball + localstatedir")
("docker-image + localstatedir", "squashfs-image + localstatedir")
("deb archive with symlinks and control files")
("rpm archive can be installed/uninstalled"): Use a <profile> record
instead of a derivation.

gnu: dpkg: Update to 1.21.21.

* gnu/packages/debian.scm (dpkg): Update to 1.21.21.

gnu: debootstrap: Update to 1.0.128.

* gnu/packages/debian.scm (debootstrap): Update to 1.0.128.

gnu: debian-ports-archive-keyring: Update to 2023.02.21.

* gnu/packages/debian.scm (debian-ports-archive-keyring): Update to
2023.02.01.
[arguments]: Remove trailing #t from phases.

gnu: Add cl-calm.

* gnu/packages/lisp-xyz.scm (cl-calm, ecl-calm, sbcl-calm): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add cl-cairo2.

* gnu/packages/lisp-xyz.scm (cl-cairo2, ecl-cl-cairo2, sbcl-cl-cairo2):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Add cl-sdl2-mixer.

* gnu/packages/lisp-xyz.scm (cl-sdl2-mixer, ecl-sdl2-mixer,
  sbcl-sdl2-mixer): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: cl-sdl2: Remove input labels.

* gnu/packages/lisp.scm (sbcl-sdl2):
  [arguments]{asd-systems}: Add sdl2/examples.
  {phases}<fix-path>: Remove trailing #f from lambda, use
  search-input-file to link SO library.
  [inputs]: Remove labels, add sbcl-cl-opengl.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: cl-sdl2: Update to 0.0.0-2.80410b5.

* gnu/packages/lisp-xyz.scm (sbcl-sdl2): Update to 0.0.0-2.80410b5.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>

gnu: Fix openmpi related packages.

This makes these package definitions compatible with the openmpi package which
uses gexps as of f45fc72c282bc14da7212b4acb8fe9707e53aad0.

* gnu/packages/mpi.scm (openmpi-c++, java-openmpi,
openmpi-thread-multiple)[arguments]: Use gexps.