1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
3 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
4 ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
5 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
7 ;;; This file is part of GNU Guix.
9 ;;; GNU Guix is free software; you can redistribute it and/or modify it
10 ;;; under the terms of the GNU General Public License as published by
11 ;;; the Free Software Foundation; either version 3 of the License, or (at
12 ;;; your option) any later version.
14 ;;; GNU Guix is distributed in the hope that it will be useful, but
15 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
16 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 ;;; GNU General Public License for more details.
19 ;;; You should have received a copy of the GNU General Public License
20 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
22 (define-module (gnu packages julia-xyz)
23 #:use-module ((guix licenses) #:prefix license:)
24 #:use-module (gnu packages)
25 #:use-module (guix packages)
26 #:use-module (guix git-download)
27 #:use-module (guix build-system julia)
28 #:use-module (gnu packages gcc)
29 #:use-module (gnu packages julia-jll))
31 (define-public julia-abstractffts
33 (name "julia-abstractffts")
39 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
40 (commit (string-append "v" version))))
41 (file-name (git-file-name name version))
43 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
44 (build-system julia-build-system)
45 (inputs ;required for tests
46 `(("julia-unitful" ,julia-unitful)))
47 (home-page "https://github.com/JuliaGPU/Adapt.jl")
48 (synopsis "General framework for fast Fourier transforms (FFTs)")
49 (description "This package allows multiple FFT packages to co-exist with
50 the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
51 mainly not intended to be used directly. Instead, developers of packages that
52 implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
53 types/functions defined in AbstractFFTs.")
54 (license license:expat)))
56 (define-public julia-abstracttrees
58 (name "julia-abstracttrees")
64 (url "https://github.com/JuliaCollections/AbstractTrees.jl")
65 (commit (string-append "v" version))))
66 (file-name (git-file-name name version))
68 (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
69 (build-system julia-build-system)
70 (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
71 (synopsis "Abstract Julia interfaces for working with trees")
72 (description "This Julia package provides several utilities for working
73 with tree-like data structures. Most importantly, it defines the
74 @code{children} method that any package that contains such a data structure
75 may import and extend in order to take advantage of any generic tree algorithm
77 (license license:expat)))
79 (define-public julia-adapt
87 (url "https://github.com/JuliaGPU/Adapt.jl")
88 (commit (string-append "v" version))))
89 (file-name (git-file-name name version))
91 (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7"))))
92 (build-system julia-build-system)
93 (home-page "https://github.com/JuliaGPU/Adapt.jl")
94 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
95 (description "This Julia package provides the @code{adapt(T, x)} function
96 acts like @code{convert(T, x)}, but without the restriction of returning a
97 @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
98 be GPU compatible without throwing away the wrapper.")
99 (license license:expat)))
101 (define-public julia-aqua
109 (url "https://github.com/JuliaTesting/Aqua.jl")
110 (commit (string-append "v" version))))
111 (file-name (git-file-name name version))
113 (base32 "0zcvrwnyhh2kr4d2xv7ps8dh7byw78dx6yb1m9m4dblgscn5kypb"))))
114 (build-system julia-build-system)
115 (home-page "https://github.com/JuliaTesting/Aqua.jl")
116 (synopsis "Automated quality assurance for Julia packages")
117 (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
118 provides functions to run a few automatable checks for Julia packages.")
119 (license license:expat)))
121 (define-public julia-arrayinterface
123 (name "julia-arrayinterface")
129 (url "https://github.com/JuliaArrays/ArrayInterface.jl")
130 (commit (string-append "v" version))))
131 (file-name (git-file-name name version))
133 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33"))))
134 (build-system julia-build-system)
136 `(("julia-ifelse" ,julia-ifelse)
137 ("julia-requires" ,julia-requires)
138 ("julia-static" ,julia-static)))
140 `(("julia-aqua" ,julia-aqua)
141 ("julia-bandedmatrices" ,julia-bandedmatrices)
142 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
143 ("julia-ifelse" ,julia-ifelse)
144 ("julia-offsetarrays" ,julia-offsetarrays)
145 ("julia-staticarrays" ,julia-staticarrays)))
146 (home-page "https://github.com/JuliaArrays/ArrayInterface.jl")
147 (synopsis "Base array interface primitives")
148 (description "The purpose of this library is to solidify extensions to the
149 current @code{AbstractArray} interface, which are put to use in package
150 ecosystems like @code{DifferentialEquations.jl}. Since these libraries are
151 live, this package will serve as a staging ground for ideas before they are
152 merged into Base Julia. For this reason, no functionality is exported so that
153 if such functions are added and exported in a future Base Julia, there will be
154 no issues with the upgrade.")
155 (license license:expat)))
157 (define-public julia-arraylayouts
159 (name "julia-arraylayouts")
165 (url "https://github.com/JuliaMatrices/ArrayLayouts.jl")
166 (commit (string-append "v" version))))
167 (file-name (git-file-name name version))
169 (base32 "0ri05xhfrj2909c6yy09qm6zi8v8s5fvmbbwbg8qgjq0yxnviw32"))))
170 (build-system julia-build-system)
172 `(("julia-fillarrays" ,julia-fillarrays)))
173 (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl")
174 (synopsis "Array layouts and general fast linear algebra")
175 (description "This package implements a trait-based framework for describing
176 array layouts such as column major, row major, etc. that can be dispatched to
177 appropriate BLAS or optimised Julia linear algebra routines. This supports a
178 much wider class of matrix types than Julia's in-built @code{StridedArray}.")
179 (license license:expat)))
181 (define-public julia-axisalgorithms
183 (name "julia-axisalgorithms")
189 (url "https://github.com/timholy/AxisAlgorithms.jl")
190 (commit (string-append "v" version))))
191 (file-name (git-file-name name version))
193 (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk"))))
194 (build-system julia-build-system)
196 `(("julia-woodburymatrices" ,julia-woodburymatrices)))
197 (home-page "https://github.com/timholy/AxisAlgorithms.jl")
198 (synopsis "Filtering and linear algebra routines for multidimensional arrays")
199 (description "@code{AxisAlgorithms} is a collection of filtering and linear
200 algebra algorithms for multidimensional arrays. For algorithms that would
201 typically apply along the columns of a matrix, you can instead pick an arbitrary
203 (license license:expat)))
205 (define-public julia-axisarrays
207 (name "julia-axisarrays")
213 (url "https://github.com/JuliaArrays/AxisArrays.jl")
214 (commit (string-append "v" version))))
215 (file-name (git-file-name name version))
217 (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk"))))
218 (build-system julia-build-system)
220 `(("julia-rangearrays" ,julia-rangearrays)
221 ("julia-intervalsets" ,julia-intervalsets)
222 ("julia-itertools" ,julia-itertools)))
224 `(("julia-offsetarrays" ,julia-offsetarrays)
225 ("julia-unitful" ,julia-unitful)))
226 (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/")
227 (synopsis "Arrays where each dimension can have a named axis with values")
228 (description "This package for the Julia language provides an array type
229 (the AxisArray) that knows about its dimension names and axis values. This
230 allows for indexing by name without incurring any runtime overhead. This
231 permits one to implement algorithms that are oblivious to the storage order of
232 the underlying arrays. AxisArrays can also be indexed by the values along their
233 axes, allowing column names or interval selections.")
234 (license license:expat)))
236 (define-public julia-bandedmatrices
238 (name "julia-bandedmatrices")
244 (url "https://github.com/JuliaMatrices/BandedMatrices.jl")
245 (commit (string-append "v" version))))
246 (file-name (git-file-name name version))
248 (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism"))))
249 (build-system julia-build-system)
251 `(("julia-arraylayouts" ,julia-arraylayouts)
252 ("julia-fillarrays" ,julia-fillarrays)))
254 `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra)))
255 (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl")
256 (synopsis "Julia package for representing banded matrices")
257 (description "This package supports representing banded matrices by only
258 the entries on the bands.")
259 (license license:expat)))
261 (define-public julia-benchmarktools
263 (name "julia-benchmarktools")
269 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
270 (commit (string-append "v" version))))
271 (file-name (git-file-name name version))
273 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
274 (build-system julia-build-system)
275 (propagated-inputs `(("julia-json" ,julia-json)))
276 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
277 (synopsis "Benchmarking framework for the Julia language")
278 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
279 code easy by supplying a framework for writing and running groups of
280 benchmarks as well as comparing benchmark results.")
281 (license license:expat)))
283 (define-public julia-blockarrays
285 (name "julia-blockarrays")
291 (url "https://github.com/JuliaArrays/BlockArrays.jl")
292 (commit (string-append "v" version))))
293 (file-name (git-file-name name version))
295 (base32 "1f9pnnfv97vww2dxklpx8pa2k85fw2l3pzsj7n28nws1xlwnj96c"))))
296 (build-system julia-build-system)
298 `(("julia-arraylayouts" ,julia-arraylayouts)
299 ("julia-fillarrays" ,julia-fillarrays)))
301 `(("julia-lazyarrays" ,julia-lazyarrays)
302 ("julia-offsetarrays" ,julia-offsetarrays)
303 ("julia-staticarrays" ,julia-staticarrays)))
304 (home-page "https://github.com/JuliaArrays/BlockArrays.jl")
305 (synopsis "BlockArrays for Julia")
306 (description "A block array is a partition of an array into blocks or
307 subarrays. This package has two purposes. Firstly, it defines an interface for
308 an @code{AbstractBlockArray} block arrays that can be shared among types
309 representing different types of block arrays. The advantage to this is that it
310 provides a consistent API for block arrays.
311 Secondly, it also implements two different type of block arrays that follow the
312 @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each
313 block contiguously while the type @code{PseudoBlockArray} stores the full matrix
314 contiguously. This means that @code{BlockArray} supports fast non copying
315 extraction and insertion of blocks while @code{PseudoBlockArray} supports fast
316 access to the full matrix to use in in for example a linear solver.")
317 (license license:expat)))
319 (define-public julia-blockbandedmatrices
321 (name "julia-blockbandedmatrices")
327 (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
328 (commit (string-append "v" version))))
329 (file-name (git-file-name name version))
331 (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9"))))
332 (build-system julia-build-system)
334 `(("julia-arraylayouts" ,julia-arraylayouts)
335 ("julia-bandedmatrices" ,julia-bandedmatrices)
336 ("julia-blockarrays" ,julia-blockarrays)
337 ("julia-fillarrays" ,julia-fillarrays)
338 ("julia-matrixfactorizations" ,julia-matrixfactorizations)))
339 (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
340 (synopsis "Block-banded matrices and banded-block-banded matrices")
341 (description "This package supports representing block-banded and
342 banded-block-banded matrices by only storing the entries in the non-zero bands.
343 A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
344 @code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
345 (license license:expat)))
347 (define-public julia-bufferedstreams
349 (name "julia-bufferedstreams")
355 (url "https://github.com/BioJulia/BufferedStreams.jl")
356 (commit (string-append "v" version))))
357 (file-name (git-file-name name version))
359 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
360 (build-system julia-build-system)
361 ;; The package is old and tests are using undefined functions. They also
363 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
366 #:julia-package-name "BufferedStreams"))
367 (propagated-inputs `(("julia-compat" ,julia-compat)))
368 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
369 (synopsis "Fast composable IO streams")
370 (description "@code{BufferedStreams.jl} provides buffering for IO
371 operations. It can wrap any @code{IO} type automatically making incremental
372 reading and writing faster.")
373 (license license:expat)))
375 (define-public julia-calculus
377 (name "julia-calculus")
383 (url "https://github.com/JuliaMath/Calculus.jl")
384 (commit (string-append "v" version))))
385 (file-name (git-file-name name version))
387 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
388 (build-system julia-build-system)
389 (home-page "https://github.com/JuliaMath/Calculus.jl")
390 (synopsis "Common utilities for automatic differentiation")
391 (description "This package provides tools for working with the basic
392 calculus operations of differentiation and integration. The @code{Calculus}
393 package produces approximate derivatives by several forms of finite
394 differencing or produces exact derivative using symbolic differentiation. It
395 can also be used to compute definite integrals by different numerical
397 (license license:expat)))
399 (define-public julia-categoricalarrays
401 (name "julia-categoricalarrays")
407 (url "https://github.com/JuliaData/CategoricalArrays.jl")
408 (commit (string-append "v" version))))
409 (file-name (git-file-name name version))
411 (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x"))))
412 (build-system julia-build-system)
414 `(("julia-pooledarrays" ,julia-pooledarrays)))
416 `(("julia-dataapi" ,julia-dataapi)
417 ("julia-json" ,julia-json)
418 ("julia-json3" ,julia-json3)
419 ("julia-missings" ,julia-missings)
420 ("julia-recipesbase" ,julia-recipesbase)
421 ("julia-structtypes" ,julia-structtypes)))
422 (home-page "https://github.com/JuliaData/CategoricalArrays.jl")
423 (synopsis "Arrays for working with categorical data")
424 (description "This package provides tools for working with categorical
425 variables, both with unordered (nominal variables) and ordered categories
426 (ordinal variables), optionally with missing values.")
427 (license license:expat)))
429 (define-public julia-chainrules
431 (name "julia-chainrules")
437 (url "https://github.com/JuliaDiff/ChainRules.jl")
438 (commit (string-append "v" version))))
439 (file-name (git-file-name name version))
441 (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70"))))
442 (build-system julia-build-system)
443 (inputs ;required for test
444 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
445 ("julia-finitedifferences" ,julia-finitedifferences)
446 ("julia-nanmath" ,julia-nanmath)
447 ("julia-specialfunctions" ,julia-specialfunctions)))
449 `(("julia-chainrulescore" ,julia-chainrulescore)
450 ("julia-compat" ,julia-compat)
451 ("julia-reexport" ,julia-reexport)
452 ("julia-requires" ,julia-requires)))
453 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
454 (synopsis "Common utilities for automatic differentiation")
455 (description "The is package provides a variety of common utilities that
456 can be used by downstream automatic differentiation (AD) tools to define and
457 execute forward-, reverse-, and mixed-mode primitives.")
458 (license license:expat)))
460 (define-public julia-chainrulescore
462 (name "julia-chainrulescore")
468 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
469 (commit (string-append "v" version))))
470 (file-name (git-file-name name version))
472 (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb"))))
473 (build-system julia-build-system)
474 (inputs ;required for tests
475 `(("julia-benchmarktools" ,julia-benchmarktools)
476 ("julia-staticarrays" ,julia-staticarrays)))
478 `(("julia-compat" ,julia-compat)))
479 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
480 (synopsis "Common utilities used by downstream automatic differentiation tools")
481 (description "The package provides a light-weight dependency for defining
482 sensitivities for functions without the need to depend on ChainRules itself.")
483 (license license:expat)))
485 (define-public julia-chainrulestestutils
487 (name "julia-chainrulestestutils")
493 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
494 (commit (string-append "v" version))))
495 (file-name (git-file-name name version))
497 (base32 "07l4sjc7avmmp4v1dsym1jyb46q4jsvv7i0yzszf72gj8d9k6lwa"))))
498 (build-system julia-build-system)
500 `(("julia-chainrulescore" ,julia-chainrulescore)
501 ("julia-compat" ,julia-compat)
502 ("julia-finitedifference" ,julia-finitedifferences)))
503 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
504 (synopsis "Common utilities used by downstream automatic differentiation tools")
505 (description "This package is designed to help in testing
506 @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
507 entry points are @code{ChainRulesTestUtils.frule_test},
508 @code{ChainRulesTestUtils.rrule_test}, and
509 @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
510 rules against numerical differentiation (using @code{FiniteDifferences.jl}).
512 @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
513 can be a test-only dependency, allowing it to have potentially heavy
514 dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
515 (license license:expat)))
517 (define-public julia-colors
519 (name "julia-colors")
525 (url "https://github.com/JuliaGraphics/Colors.jl")
526 (commit (string-append "v" version))))
527 (file-name (git-file-name name version))
529 (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
530 (build-system julia-build-system)
532 `(("julia-colortypes" ,julia-colortypes)
533 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
534 ("julia-reexport" ,julia-reexport)))
535 (home-page "https://github.com/JuliaGraphics/Colors.jl")
536 (synopsis "Tools for dealing with color")
537 (description "This package provides a wide array of functions for dealing
538 with color. This includes conversion between colorspaces, measuring distance
539 between colors, simulating color blindness, parsing colors, and generating
540 color scales for graphics.")
541 (license license:expat)))
543 (define-public julia-colorschemes
545 (name "julia-colorschemes")
551 (url "https://github.com/JuliaGraphics/ColorSchemes.jl")
552 (commit (string-append "v" version))))
553 (file-name (git-file-name name version))
555 (base32 "13gy1njxlkfnxmpj2z6aj1bzbzn7jipaxr9fgkv41yiy0xjhqiyh"))))
556 (build-system julia-build-system)
558 `(("julia-colors" ,julia-colors)
559 ("julia-colortypes" ,julia-colortypes)
560 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
561 ("julia-staticarrays" ,julia-staticarrays)))
562 (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl")
563 (synopsis "Colorschemes, colormaps, gradients, and palettes")
564 (description "This package provides a collection of colorschemes.")
565 (license license:expat)))
567 (define-public julia-colortypes
569 (name "julia-colortypes")
575 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
576 (commit (string-append "v" version))))
577 (file-name (git-file-name name version))
579 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
581 '(#:tests? #f)) ;require Documenter, not packaged yet
582 (build-system julia-build-system)
584 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
585 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
586 (synopsis "Basic color types and constructor")
587 (description "This minimalistic package serves as the foundation for
588 working with colors in Julia. It defines basic color types and their
589 constructors, and sets up traits and show methods to make them easier to work
591 (license license:expat)))
593 (define-public julia-colorvectorspace
595 (name "julia-colorvectorspace")
601 (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
602 (commit (string-append "v" version))))
603 (file-name (git-file-name name version))
605 (base32 "1gx4k1bvf6lkzxphnvpkw857ihrkifhb68yvsj889k9pf1vda3fq"))))
606 (build-system julia-build-system)
608 `(("julia-colortypes" ,julia-colortypes)
609 ("julia-specialfunctions" ,julia-specialfunctions)
610 ("julia-tensorcore" ,julia-tensorcore)))
612 `(("julia-colors" ,julia-colors)))
613 (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
614 (synopsis "Treat colors as n-vectors for the purposes of arithmetic")
615 (description "This package is an add-on to @code{ColorTypes.jl} and provides
616 fast mathematical operations for objects with types such as RGB and Gray.
617 Specifically, with this package both grayscale and RGB colors are treated as if
618 they are points in a normed vector space.")
619 (license license:expat)))
621 (define-public julia-combinatorics
623 (name "julia-combinatorics")
629 (url "https://github.com/JuliaMath/Combinatorics.jl")
630 (commit (string-append "v" version))))
631 (file-name (git-file-name name version))
633 (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
634 (build-system julia-build-system)
635 (home-page "https://github.com/JuliaMath/Combinatorics.jl")
636 (synopsis "Combinatorics library for Julia")
637 (description "This package provides a combinatorics library for Julia,
638 focusing mostly (as of now) on enumerative combinatorics and permutations.")
639 (license license:expat)))
641 (define-public julia-commonsubexpressions
643 (name "julia-commonsubexpressions")
649 (url "https://github.com/rdeits/CommonSubexpressions.jl")
650 (commit (string-append "v" version))))
651 (file-name (git-file-name name version))
653 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
654 (build-system julia-build-system)
656 `(("julia-macrotools" ,julia-macrotools)))
657 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
658 (synopsis "@code{@@cse} macro for Julia")
659 (description "This package provides the @code{@@cse} macro, which performs
660 common subexpression elimination.")
661 (license license:expat)))
663 (define-public julia-compat
665 (name "julia-compat")
671 (url "https://github.com/JuliaLang/Compat.jl")
672 (commit (string-append "v" version))))
673 (file-name (git-file-name name version))
675 (base32 "1zif3dj0a85w7xqbg0chrdhw8dk410zxcqbnkf764xmylwbps498"))))
676 (build-system julia-build-system)
677 (home-page "https://github.com/JuliaLang/Compat.jl")
678 (synopsis "Compatibility across Julia versions")
679 (description "The Compat package is designed to ease interoperability
680 between older and newer versions of the Julia language. The Compat package
681 provides a macro that lets you use the latest syntax in a backwards-compatible
683 (license license:expat)))
685 (define-public julia-constructionbase
687 (name "julia-constructionbase")
693 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
694 (commit (string-append "v" version))))
695 (file-name (git-file-name name version))
697 (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q"))))
698 (build-system julia-build-system)
699 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
700 (synopsis "Primitive functions for construction of objects")
701 (description "This very lightweight package provides primitive functions
702 for construction of objects.")
703 (license license:expat)))
705 (define-public julia-coordinatetransformations
707 (name "julia-coordinatetransformations")
713 (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
714 (commit (string-append "v" version))))
715 (file-name (git-file-name name version))
717 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d"))))
718 (build-system julia-build-system)
720 `(#:tests? #f)) ; Documenter.jl not packaged yet.
722 `(("julia-staticarrays" ,julia-staticarrays)))
724 ; `(("julia-documenter" ,julia-documenter)
725 ; ("julia-forwarddiff" ,julia-forwarddiff)
726 ; ("julia-unitful" ,julia-unitful)))
727 (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
728 (synopsis "Coordinate transformations in Julia")
729 (description "@code{CoordinateTransformations} is a Julia package to manage
730 simple or complex networks of coordinate system transformations.
731 Transformations can be easily applied, inverted, composed, and differentiated
732 (both with respect to the input coordinates and with respect to transformation
733 parameters such as rotation angle). Transformations are designed to be
734 light-weight and efficient enough for, e.g., real-time graphical applications,
735 while support for both explicit and automatic differentiation makes it easy to
736 perform optimization and therefore ideal for computer vision applications such
737 as SLAM (simultaneous localization and mapping).")
738 (license license:expat)))
740 (define-public julia-crayons
742 (name "julia-crayons")
748 (url "https://github.com/KristofferC/Crayons.jl")
749 (commit (string-append "v" version))))
750 (file-name (git-file-name name version))
752 (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
753 (build-system julia-build-system)
754 (home-page "https://github.com/KristofferC/Crayons.jl")
755 (synopsis "Colored and styled strings for terminals")
756 (description "Crayons is a package that makes it simple to write strings in
757 different colors and styles to terminals. It supports the 16 system colors,
758 both the 256 color and 24 bit true color extensions, and the different text
759 styles available to terminals.")
760 (license license:expat)))
762 (define-public julia-dataapi
764 (name "julia-dataapi")
770 (url "https://github.com/JuliaData/DataAPI.jl")
771 (commit (string-append "v" version))))
772 (file-name (git-file-name name version))
774 (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7"))))
775 (build-system julia-build-system)
776 (home-page "https://github.com/JuliaData/DataAPI.jl")
777 (synopsis "Data-focused namespace for packages to share functions")
778 (description "This package provides a namespace for data-related generic
779 function definitions to solve the optional dependency problem; packages wishing
780 to share and/or extend functions can avoid depending directly on each other by
781 moving the function definition to DataAPI.jl and each package taking a
783 (license license:expat)))
785 (define-public julia-datastructures
787 (name "julia-datastructures")
793 (url "https://github.com/JuliaCollections/DataStructures.jl")
794 (commit (string-append "v" version))))
795 (file-name (git-file-name name version))
797 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
799 `(("julia-compat" ,julia-compat)
800 ("julia-orderedcollections" ,julia-orderedcollections)))
801 (build-system julia-build-system)
802 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
803 (synopsis "Julia module providing different data structures")
804 (description "This package implements a variety of data structures,
805 including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
806 @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
807 (license license:expat)))
809 (define-public julia-datavalueinterfaces
811 (name "julia-datavalueinterfaces")
817 (url "https://github.com/queryverse/DataValueInterfaces.jl")
818 (commit (string-append "v" version))))
819 (file-name (git-file-name name version))
821 (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"))))
822 (build-system julia-build-system)
823 (home-page "https://github.com/queryverse/DataValueInterfaces.jl")
824 (synopsis "Interface for DataValues.jl")
825 (description "This package allows a few \"forward\" definitions for the
826 @code{DataValues.jl} package that other packages can utilize for integration
827 without having to take direct dependencies.")
828 (license license:expat)))
830 (define-public julia-datavalues
832 (name "julia-datavalues")
838 (url "https://github.com/queryverse/DataValues.jl")
839 (commit (string-append "v" version))))
840 (file-name (git-file-name name version))
842 (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
843 (build-system julia-build-system)
845 `(#:tests? #f ; Tests need upgrading with newer Julia version.
847 (modify-phases %standard-phases
848 (add-after 'unpack 'skip-known-failing-tests
850 ;; See upstream report:
851 ;; https://github.com/queryverse/DataValues.jl/issues/83
852 (substitute* "test/array/test_reduce.jl"
853 ((".*DataValue\\(mapreduce.*") "")
854 ((".*DataValue\\(method\\(f.*") ""))
857 `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces)))
858 (home-page "https://github.com/queryverse/DataValues.jl")
859 (synopsis "Missing values for Julia")
860 (description "This package provides the type @code{DataValue} that is used
861 to represent missing data.")
862 (license license:expat)))
864 (define-public julia-deepdiffs
866 (name "julia-deepdiffs")
872 (url "https://github.com/ssfrr/DeepDiffs.jl")
873 (commit (string-append "v" version))))
874 (file-name (git-file-name name version))
876 (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds"))))
877 (build-system julia-build-system)
878 (home-page "https://github.com/ssfrr/DeepDiffs.jl")
879 (synopsis "Compute and pretty-print diffs for data structures")
880 (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function,
881 which finds and displays differences (diffs) between Julia data structures. It
882 supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing
883 dictionaries where values associated with a particular key may change,
884 @code{deepdiff} will recurse into value to provide a more detailed diff.")
885 (license license:expat)))
887 (define-public julia-dictionaries
889 (name "julia-dictionaries")
895 (url "https://github.com/andyferris/Dictionaries.jl")
896 (commit (string-append "v" version))))
897 (file-name (git-file-name name version))
899 (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5"))))
900 (build-system julia-build-system)
902 `(("julia-indexing" ,julia-indexing)))
903 (home-page "https://github.com/andyferris/Dictionaries.jl")
904 (synopsis "Alternative interface for dictionaries in Julia")
905 (description "This package provides an alternative interface for
906 dictionaries in Julia, for improved productivity and performance.")
907 (license license:expat)))
909 (define-public julia-distances
911 (name "julia-distances")
917 (url "https://github.com/JuliaStats/Distances.jl")
918 (commit (string-append "v" version))))
919 (file-name (git-file-name name version))
921 (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
922 (build-system julia-build-system)
925 (modify-phases %standard-phases
926 (add-after 'unpack 'skip-flakey-tests
928 ;; Some combination of these tests fail nondeterministically
929 ;; each of the times this package is built.
930 (substitute* "test/test_dists.jl"
931 (("test dyz ≥") "test_nowarn dyz ≥")
932 (("test dist\\(y, x") "test_nowarn dist(y, x")
933 (("test dist\\(z, x") "test_nowarn dist(z, x")
934 (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
936 `(("julia-statsapi" ,julia-statsapi)))
938 `(("julia-offsetarrays" ,julia-offsetarrays)
939 ("julia-unitful" ,julia-unitful)))
940 (home-page "https://github.com/JuliaStats/Distances.jl")
941 (synopsis "Julia package for evaluating distances (metrics) between vectors")
942 (description "A Julia package for evaluating distances(metrics) between
943 vectors. This package also provides optimized functions to compute column-wise
944 and pairwise distances, which are often substantially faster than a
945 straightforward loop implementation.")
946 (license license:expat)))
948 (define-public julia-docstringextensions
950 (name "julia-docstringextensions")
956 (url "https://github.com/JuliaDocs/DocStringExtensions.jl")
957 (commit (string-append "v" version))))
958 (file-name (git-file-name name version))
960 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
961 (build-system julia-build-system)
963 `(#:tests? #f)) ; Tests try to read SSL certificates.
964 (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
965 (synopsis "Extensions for Julia's docsystem")
966 (description "This package provides a collection of useful extensions for
967 Julia's built-in docsystem. These are features that are not yet mature enough
968 to be considered for inclusion in Base, or that have sufficiently niche use
969 cases that including them with the default Julia installation is not seen as
970 valuable enough at this time.")
971 (license license:expat)))
973 (define-public julia-diffresults
975 (name "julia-diffresults")
981 (url "https://github.com/JuliaDiff/DiffResults.jl")
982 (commit (string-append "v" version))))
983 (file-name (git-file-name name version))
985 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
987 `(("julia-staticarrays" ,julia-staticarrays)))
988 (build-system julia-build-system)
989 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
990 (synopsis "In-place differentiation methods of primal values at multi-order")
991 (description "This package provides the @code{DiffResult} type, which can
992 be passed to in-place differentiation methods instead of an output buffer.")
993 (license license:expat)))
995 (define-public julia-diffrules
997 (name "julia-diffrules")
1003 (url "https://github.com/JuliaDiff/DiffRules.jl")
1004 (commit (string-append "v" version))))
1005 (file-name (git-file-name name version))
1007 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
1009 `(("julia-nanmath" ,julia-nanmath)
1010 ("julia-specialfunctions" ,julia-specialfunctions)))
1011 (build-system julia-build-system)
1012 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
1013 (synopsis "Primitive differentiation rules")
1014 (description "This package provides primitive differentiation rules that
1015 can be composed via various formulations of the chain rule. Using
1016 @code{DiffRules}, new differentiation rules can defined, query whether or not
1017 a given rule exists, and symbolically apply rules to simple Julia expressions.")
1018 (license license:expat)))
1020 (define-public julia-difftests
1022 (name "julia-difftests")
1028 (url "https://github.com/JuliaDiff/DiffTests.jl")
1029 (commit (string-append "v" version))))
1030 (file-name (git-file-name name version))
1032 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
1033 (build-system julia-build-system)
1034 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
1035 (synopsis "Common test functions for differentiation tools")
1036 (description "This package contains a common suite of test functions for
1037 stressing the robustness of differentiation tools.")
1038 (license license:expat)))
1040 (define-public julia-dualnumbers
1042 (name "julia-dualnumbers")
1048 (url "https://github.com/JuliaDiff/DualNumbers.jl")
1049 (commit (string-append "v" version))))
1050 (file-name (git-file-name name version))
1052 (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
1053 (build-system julia-build-system)
1056 (modify-phases %standard-phases
1057 (add-after 'unpack 'adjust-test-suite
1059 (substitute* "test/runtests.jl"
1060 ;; Seems to not play nicely with SpecialFunctions
1061 ((".*isempty.*") "")))))))
1063 `(("julia-calculus" ,julia-calculus)
1064 ("julia-nanmath" ,julia-nanmath)
1065 ("julia-specialfunctions" ,julia-specialfunctions)))
1066 (home-page "https://github.com/JuliaDiff/DualNumbers.jl")
1067 (synopsis "Represent dual numbers and for perform dual algebra")
1068 (description "The @code{DualNumbers} Julia package defines the @code{Dual}
1069 type to represent dual numbers, and supports standard mathematical operations on
1070 them. Conversions and promotions are defined to allow performing operations on
1071 combinations of dual numbers with predefined Julia numeric types.")
1072 (license license:expat)))
1074 (define-public julia-ellipsisnotation
1076 (name "julia-ellipsisnotation")
1082 (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1083 (commit (string-append "v" version))))
1084 (file-name (git-file-name name version))
1086 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
1087 (build-system julia-build-system)
1090 (modify-phases %standard-phases
1091 (add-after 'unpack 'adjust-test-suite
1093 (substitute* "test/runtests.jl"
1094 ;; Seems to not play nicely with Julia-1.6.
1095 ((".*basic.jl.*") "")))))))
1097 `(("julia-arrayinterface" ,julia-arrayinterface)))
1098 (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1099 (synopsis "Elipsis notation implementation")
1100 (description "This implements the notation @code{..} for indexing arrays.
1101 It's similar to the Python @code{...} in that it means \"all of the columns
1102 before (or after)\".")
1103 (license license:expat)))
1105 (define-public julia-example
1106 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
1108 (name "julia-example")
1109 (version "0.5.4") ;tag not created upstream
1114 (url "https://github.com/JuliaLang/Example.jl")
1116 (file-name (git-file-name name version))
1118 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
1119 (build-system julia-build-system)
1120 (home-page "https://github.com/JuliaLang/Example.jl")
1121 (synopsis "Module providing examples")
1122 (description "This package provides various examples.")
1123 (license license:expat))))
1125 (define-public julia-exprtools
1127 (name "julia-exprtools")
1133 (url "https://github.com/invenia/ExprTools.jl")
1134 (commit (string-append "v" version))))
1135 (file-name (git-file-name name version))
1137 (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4"))))
1138 (build-system julia-build-system)
1139 (home-page "https://github.com/invenia/ExprTools.jl")
1140 (synopsis "Light-weight expression manipulation tools")
1141 (description "@code{ExprTools} provides tooling for working with Julia
1142 expressions during metaprogramming. This package aims to provide light-weight
1143 performant tooling without requiring additional package dependencies.")
1144 (license license:expat)))
1146 (define-public julia-ffmpeg
1148 (name "julia-ffmpeg")
1154 (url "https://github.com/JuliaIO/FFMPEG.jl")
1155 (commit (string-append "v" version))))
1156 (file-name (git-file-name name version))
1158 (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b"))))
1159 (build-system julia-build-system)
1161 `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
1162 ("julia-x264-jll" ,julia-x264-jll)))
1163 (home-page "https://github.com/JuliaIO/FFMPEG.jl")
1164 (synopsis "Julia Package for ffmpeg")
1165 (description "This package is made to be included into packages that just
1166 need the ffmpeg binaries + executables, and don't want the overhead of
1167 @code{VideoIO.jl}.")
1168 (license license:expat)))
1170 (define-public julia-fileio
1172 (name "julia-fileio")
1178 (url "https://github.com/JuliaIO/FileIO.jl")
1179 (commit (string-append "v" version))))
1180 (file-name (git-file-name name version))
1182 (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
1183 (build-system julia-build-system)
1186 (modify-phases %standard-phases
1187 (delete 'reset-gzip-timestamps)
1188 (add-after 'unpack 'skip-network-tests
1190 ;; These tests try to download audio/video files.
1191 (substitute* "test/query.jl"
1192 (("testset.*(MP4|OGG|MATROSKA).*" all)
1193 (string-append all "return\n")))
1194 (substitute* "test/loadsave.jl"
1195 (("testset.*CSVFiles.*" all)
1196 (string-append all "return\n")))
1197 ;; This test tries to download a Julia package.
1198 (substitute* "test/error_handling.jl"
1199 (("testset.*Not installed.*" all)
1200 (string-append all "return\n")))
1201 ;; This test tries to write to the store.
1202 ;; (Error says can't find User 0)
1203 (substitute* "test/runtests.jl"
1204 ((".*test_mimesave.*") "")))))))
1206 `(("julia-requires" ,julia-requires)))
1208 `(("julia-colortypes" ,julia-colortypes)
1209 ("julia-filepathsbase" ,julia-filepathsbase)
1210 ("julia-http" ,julia-http)))
1211 (home-page "https://github.com/JuliaIO/FileIO.jl")
1212 (synopsis "Main Package for IO, loading all different kind of files")
1213 (description "@code{FileIO} aims to provide a common framework for detecting
1214 file formats and dispatching to appropriate readers/writers. The two core
1215 functions in this package are called @code{load} and @code{save}, and offer
1216 high-level support for formatted files (in contrast with Julia's low-level
1217 @code{read} and @code{write}).")
1218 (license license:expat)))
1220 (define-public julia-filepathsbase
1222 (name "julia-filepathsbase")
1228 (url "https://github.com/rofinn/FilePathsBase.jl")
1229 (commit (string-append "v" version))))
1230 (file-name (git-file-name name version))
1232 (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
1233 (build-system julia-build-system)
1235 `(#:tests? #f)) ; Cycle with JLSO.jl
1236 (home-page "https://github.com/rofinn/FilePathsBase.jl")
1237 (synopsis "Filesystem path types in Julia")
1238 (description "@code{FilePathsBase.jl} provides a type based approach to
1239 working with filesystem paths in Julia.")
1240 (license license:expat)))
1242 (define-public julia-fillarrays
1244 (name "julia-fillarrays")
1250 (url "https://github.com/JuliaArrays/FillArrays.jl")
1251 (commit (string-append "v" version))))
1252 (file-name (git-file-name name version))
1254 (base32 "1va8vvcxbxcy5xp487hdqfp0ps3m8q0819xrxygsf5135azp3qrh"))))
1255 (build-system julia-build-system)
1256 (inputs ;required by tests
1257 `(("julia-staticarrays" ,julia-staticarrays)))
1258 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
1259 (synopsis "Lazy matrix representation")
1260 (description "This package lazily represents matrices filled with
1261 a single entry, as well as identity matrices. This package exports the
1262 following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
1263 @code{Trues} and @code{Falses}.")
1264 (license license:expat)))
1266 (define-public julia-finitediff
1268 (name "julia-finitediff")
1274 (url "https://github.com/JuliaDiff/FiniteDiff.jl")
1275 (commit (string-append "v" version))))
1276 (file-name (git-file-name name version))
1278 (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq"))))
1279 (build-system julia-build-system)
1282 (modify-phases %standard-phases
1283 (add-before 'check 'pre-check
1285 ;; We don't want to run all the tests; the Downstream tests
1286 ;; try to download the package registry.
1287 (setenv "GROUP" "Core")
1290 `(("julia-arrayinterface" ,julia-arrayinterface)
1291 ("julia-requires" ,julia-requires)
1292 ("julia-staticarrays" ,julia-staticarrays)))
1294 `(("julia-bandedmatrices" ,julia-bandedmatrices)
1295 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
1296 ("julia-safetestsets" ,julia-safetestsets)))
1297 (home-page "https://github.com/JuliaDiff/FiniteDiff.jl")
1298 (synopsis "Calculations of gradients, Jacobians, and Hessians")
1299 (description "This package is for calculating derivatives, gradients,
1300 Jacobians, Hessians, etc. numerically. This library is for maximizing speed
1301 while giving a usable interface to end users in a way that specializes on array
1302 types and sparsity.")
1303 (license license:expat)))
1305 (define-public julia-finitedifferences
1307 (name "julia-finitedifferences")
1313 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
1314 (commit (string-append "v" version))))
1315 (file-name (git-file-name name version))
1317 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
1318 (build-system julia-build-system)
1320 `(("julia-benchmarktools" ,julia-benchmarktools)))
1322 `(("julia-chainrulescore" ,julia-chainrulescore)
1323 ("julia-richardson" ,julia-richardson)
1324 ("julia-staticarrays" ,julia-staticarrays)))
1325 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
1326 (synopsis "Estimates derivatives with finite differences")
1327 (description "This package calculates approximate derivatives numerically
1328 using finite difference.")
1329 (license license:expat)))
1331 (define-public julia-fixedpointnumbers
1333 (name "julia-fixedpointnumbers")
1339 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
1340 (commit (string-append "v" version))))
1341 (file-name (git-file-name name version))
1343 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
1344 (build-system julia-build-system)
1347 (modify-phases %standard-phases
1348 (add-after 'unpack 'disable-failing-test
1349 (lambda* (#:key outputs #:allow-other-keys)
1350 (substitute* "test/fixed.jl"
1351 ;; A deprecation warning is not thrown
1352 (("@test_logs.*:warn" all) (string-append "# " all)))
1354 (propagated-inputs `(("julia-compat" ,julia-compat)))
1355 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
1356 (synopsis "Fixed point types for Julia")
1357 (description "@code{FixedPointNumbers.jl} implements fixed-point number
1358 types for Julia. A fixed-point number represents a fractional, or
1359 non-integral, number. In contrast with the more widely known floating-point
1360 numbers, with fixed-point numbers the decimal point doesn't \"float\":
1361 fixed-point numbers are effectively integers that are interpreted as being
1362 scaled by a constant factor. Consequently, they have a fixed number of
1363 digits (bits) after the decimal (radix) point.")
1364 (license license:expat)))
1366 (define-public julia-formatting
1368 (name "julia-formatting")
1374 (url "https://github.com/JuliaIO/Formatting.jl")
1375 (commit (string-append "v" version))))
1376 (file-name (git-file-name name version))
1378 (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh"))))
1379 (build-system julia-build-system)
1380 (home-page "https://github.com/JuliaIO/Formatting.jl")
1381 (synopsis "Julia package to provide Python-like formatting support")
1382 (description "This package offers Python-style general formatting and
1383 c-style numerical formatting.")
1384 (license license:expat)))
1386 (define-public julia-forwarddiff
1388 (name "julia-forwarddiff")
1394 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
1395 (commit (string-append "v" version))))
1396 (file-name (git-file-name name version))
1398 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
1399 (build-system julia-build-system)
1400 (inputs ;required for tests
1401 `(("julia-calculus" ,julia-calculus)
1402 ("julia-difftests" ,julia-difftests)))
1404 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
1405 ("julia-diffresults" ,julia-diffresults)
1406 ("julia-diffrules" ,julia-diffrules)
1407 ("julia-nanmath" ,julia-nanmath)
1408 ("julia-specialfunctions" ,julia-specialfunctions)
1409 ("julia-staticarrays" ,julia-staticarrays)))
1410 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
1411 (synopsis "Methods to take multidimensional derivatives")
1412 (description "This package implements methods to take derivatives,
1413 gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
1414 functions (or any callable object, really) using forward mode automatic
1415 differentiation (AD).")
1416 (license license:expat)))
1418 (define-public julia-functionwrappers
1420 (name "julia-functionwrappers")
1426 (url "https://github.com/yuyichao/FunctionWrappers.jl")
1427 (commit (string-append "v" version))))
1428 (file-name (git-file-name name version))
1430 (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
1431 (build-system julia-build-system)
1434 (modify-phases %standard-phases
1435 (add-after 'unpack 'adjust-tests
1437 (substitute* "test/runtests.jl"
1438 (("testset \\\"Abstract.*" all)
1439 (string-append all "return\n"))))))))
1440 (home-page "https://github.com/yuyichao/FunctionWrappers.jl")
1441 (synopsis "Type stable and efficient wrapper of arbitrary functions")
1442 (description "This package provides a type stable and efficient wrapper of
1443 arbitrary functions.")
1444 (license license:expat)))
1446 (define-public julia-fuzzycompletions
1448 (name "julia-fuzzycompletions")
1454 (url "https://github.com/JunoLab/FuzzyCompletions.jl")
1455 (commit (string-append "v" version))))
1456 (file-name (git-file-name name version))
1458 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
1459 (build-system julia-build-system)
1462 (modify-phases %standard-phases
1463 (add-after 'unpack 'skip-failing-test
1465 (substitute* "test/runtests.jl"
1466 ((".*RPLE.*") "")))))))
1467 (home-page "https://github.com/JunoLab/FuzzyCompletions.jl")
1468 (synopsis "Fuzzy completion provider for Julia")
1470 "FuzzyCompletions provides fuzzy completions for a Julia runtime session.")
1471 (license license:expat)))
1473 (define-public julia-genericlinearalgebra
1475 (name "julia-genericlinearalgebra")
1481 (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1482 (commit (string-append "v" version))))
1483 (file-name (git-file-name name version))
1485 (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
1486 (build-system julia-build-system)
1489 (modify-phases %standard-phases
1490 (add-after 'unpack 'adjust-test-suite
1492 (substitute* "test/runtests.jl"
1493 ((".*lapack.*") "")))))))
1495 `(("julia-quaternions" ,julia-quaternions)))
1496 (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1497 (synopsis "Generic numerical linear algebra")
1498 (description "The purpose of this package is partly to extend linear algebra
1499 functionality in base to cover generic element types, e.g. @code{BigFloat} and
1500 @code{Quaternion}, and partly to be a place to experiment with fast linear
1501 algebra routines written in Julia (except for optimized BLAS).")
1502 (license license:expat)))
1504 (define-public julia-genericschur
1506 (name "julia-genericschur")
1512 (url "https://github.com/RalphAS/GenericSchur.jl")
1513 (commit (string-append "v" version))))
1514 (file-name (git-file-name name version))
1516 (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d"))))
1517 (build-system julia-build-system)
1520 (modify-phases %standard-phases
1521 (add-after 'unpack 'adjust-test-suite
1523 (substitute* "test/complex.jl"
1524 ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
1525 (("A = _example") "#A = _example")
1526 (("schurtest\\(A,20\\)") ""))
1527 (substitute* "test/runtests.jl"
1528 ;; Test errors relating to liblapack.so
1529 ((".*complex\\.jl.*") "")
1530 ((".*real\\.jl.*") "")
1531 ;; GenericSVD is deprecated upstream
1532 ((".*gordschur\\.jl.*") "")))))))
1533 (home-page "https://github.com/RalphAS/GenericSchur.jl")
1534 (synopsis "Schur decomposition of matrices with generic element types")
1535 (description "The Schur decomposition is the workhorse for eigensystem
1536 analysis of dense matrices. The diagonal eigen-decomposition of normal
1537 (especially Hermitian) matrices is an important special case, but for non-normal
1538 matrices the Schur form is often more useful.")
1539 (license license:expat)))
1541 (define-public julia-graphics
1543 (name "julia-graphics")
1549 (url "https://github.com/JuliaGraphics/Graphics.jl")
1550 (commit (string-append "v" version))))
1551 (file-name (git-file-name name version))
1553 (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn"))))
1554 (build-system julia-build-system)
1556 `(("julia-colors" ,julia-colors)
1557 ("julia-nanmath" ,julia-nanmath)))
1558 (home-page "https://github.com/JuliaGraphics/Graphics.jl")
1559 (synopsis "Base graphics in Julia")
1560 (description "@code{Graphics.jl} is an abstraction layer for graphical
1561 operations in Julia.")
1562 (license license:expat)))
1564 (define-public julia-gumbo
1566 (name "julia-gumbo")
1572 (url "https://github.com/JuliaWeb/Gumbo.jl")
1573 (commit (string-append "v" version))))
1574 (file-name (git-file-name name version))
1576 (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
1577 (build-system julia-build-system)
1579 `(("julia-abstracttrees" ,julia-abstracttrees)
1580 ("julia-gumbo-jll" ,julia-gumbo-jll)))
1581 (home-page "https://github.com/JuliaWeb/Gumbo.jl")
1582 (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
1583 (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
1584 library for parsing HTML.")
1585 (license license:expat)))
1587 (define-public julia-http
1595 (url "https://github.com/JuliaWeb/HTTP.jl")
1596 (commit (string-append "v" version))))
1597 (file-name (git-file-name name version))
1599 (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk"))))
1600 (build-system julia-build-system)
1603 (modify-phases %standard-phases
1604 (add-before 'install 'disable-network-tests
1606 (substitute* "test/runtests.jl"
1607 (("\"async.jl") "# \"async.jl")
1608 (("\"client.jl") "# \"client.jl"))
1609 (substitute* "test/aws4.jl"
1610 (("@testset.*HTTP.request with AWS authentication.*" all)
1611 (string-append all "return\n")))
1612 (substitute* "test/insert_layers.jl"
1613 (("@testset.*Inserted final layer runs handler.*" all)
1614 (string-append all "return\n")))
1615 (substitute* "test/multipart.jl"
1616 (("@testset \"Setting of Content-Type.*" all)
1617 (string-append all "return\n"))
1618 (("@testset \"Deprecation of .*" all)
1619 (string-append all "return\n")))
1620 (substitute* "test/websockets.jl"
1621 (("@testset.*External Host.*" all)
1622 (string-append all "return\n")))
1623 (substitute* "test/messages.jl"
1624 (("@testset.*Read methods.*" all)
1625 (string-append all "return\n"))
1626 (("@testset.*Body - .*" all)
1627 (string-append all "return\n"))
1628 (("@testset.*Write to file.*" all)
1629 (string-append all "return\n")))
1632 `(("julia-inifile" ,julia-inifile)
1633 ("julia-mbedtls" ,julia-mbedtls)
1634 ("julia-uris" ,julia-uris)))
1635 ;; required for tests
1637 `(("julia-json" ,julia-json)
1638 ("julia-bufferedstreams" ,julia-bufferedstreams)))
1639 (home-page "https://juliaweb.github.io/HTTP.jl/")
1640 (synopsis "HTTP support for Julia")
1641 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
1642 implementing both a client and a server.")
1643 (license license:expat)))
1645 (define-public julia-identityranges
1647 (name "julia-identityranges")
1653 (url "https://github.com/JuliaArrays/IdentityRanges.jl")
1654 (commit (string-append "v" version))))
1655 (file-name (git-file-name name version))
1657 (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml"))))
1658 (build-system julia-build-system)
1660 `(("julia-offsetarrays" ,julia-offsetarrays)))
1661 (home-page "https://github.com/JuliaArrays/IdentityRanges.jl")
1662 (synopsis "Ranges that preserve indices of views")
1663 (description "@code{IdentityRanges} are Julia-language a helper type for
1664 creating \"views\" of arrays. They are a custom type of AbstractUnitRange that
1665 makes it easy to preserve the indices of array views. The key property of an
1666 @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the
1667 type/package), and that they support arbitrary start/stop indices (i.e., not
1668 just starting at 1).")
1669 (license license:expat)))
1671 (define-public julia-ifelse
1673 (name "julia-ifelse")
1679 (url "https://github.com/sciml/ifelse.jl")
1680 (commit (string-append "v" version))))
1681 (file-name (git-file-name name version))
1683 (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
1684 (build-system julia-build-system)
1685 (home-page "https://github.com/sciml/ifelse.jl")
1686 (synopsis "Function form of the if-else conditional statement")
1687 (description "This package provides a convenient function form of the
1688 conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
1689 (license license:expat)))
1691 (define-public julia-imageaxes
1693 (name "julia-imageaxes")
1699 (url "https://github.com/JuliaImages/ImageAxes.jl")
1700 (commit (string-append "v" version))))
1701 (file-name (git-file-name name version))
1703 (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd"))))
1704 (build-system julia-build-system)
1706 `(("julia-axisarrays" ,julia-axisarrays)
1707 ("julia-imagecore" ,julia-imagecore)
1708 ("julia-reexport" ,julia-reexport)
1709 ("julia-simpletraits" ,julia-simpletraits)))
1711 `(("julia-unitful" ,julia-unitful)))
1712 (home-page "https://github.com/JuliaImages/ImageAxes.jl")
1713 (synopsis "Julia package for giving \"meaning\" to the axes of an image")
1714 (description "This small package supports the representation of images as
1715 @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with
1716 such arrays easy via traits.")
1717 (license license:expat)))
1719 (define-public julia-imagebase
1721 (name "julia-imagebase")
1727 (url "https://github.com/JuliaImages/ImageBase.jl")
1728 (commit (string-append "v" version))))
1729 (file-name (git-file-name name version))
1731 (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
1732 (build-system julia-build-system)
1734 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1736 `(("julia-imagecore" ,julia-imagecore)
1737 ("julia-reexport" ,julia-reexport)))
1739 ; `(("julia-imagemagick" ,julia-imagemagick)
1740 ; ("julia-offsetarrays" ,julia-offsetarrays)
1741 ; ("julia-testimages" ,julia-testimages)))
1742 (home-page "https://github.com/JuliaImages/ImageBase.jl")
1743 (synopsis "Wrapper package around ImageCore")
1744 (description "This is a twin package to @code{ImageCore} with functions that
1745 are used among many of the packages in JuliaImages. The main purpose of this
1746 package is to reduce unnecessary compilation overhead from external
1748 (license license:expat)))
1750 (define-public julia-imagecore
1752 (name "julia-imagecore")
1758 (url "https://github.com/JuliaImages/ImageCore.jl")
1759 (commit (string-append "v" version))))
1760 (file-name (git-file-name name version))
1762 (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq"))))
1763 (build-system julia-build-system)
1765 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1767 `(("julia-abstractffts" ,julia-abstractffts)
1768 ("julia-colors" ,julia-colors)
1769 ("julia-colorvectorspace" ,julia-colorvectorspace)
1770 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
1771 ("julia-graphics" ,julia-graphics)
1772 ("julia-mappedarrays" ,julia-mappedarrays)
1773 ("julia-mosaicviews" ,julia-mosaicviews)
1774 ("julia-offsetarrays" ,julia-offsetarrays)
1775 ("julia-paddedviews" ,julia-paddedviews)
1776 ("julia-reexport" ,julia-reexport)))
1778 ; `(("julia-aqua" ,julia-aqua)
1779 ; ("julia-colorvectorspace" ,julia-colorvectorspace)
1780 ; ("julia-documenter" ,julia-documenter)
1781 ; ("julia-fftw" ,julia-fftw)
1782 ; ("julia-imageinterminal" ,julia-imageinterminal)
1783 ; ("julia-imagemagick" ,julia-imagemagick)
1784 ; ("julia-referencetests" ,julia-referencetests)
1785 ; ("julia-statistics" ,julia-statistics)))
1786 (home-page "https://github.com/JuliaImages/ImageCore.jl")
1787 (synopsis "Julia types for representing images")
1788 (description "@code{ImageCore} is the lowest-level component of the system
1789 of packages designed to support image processing and computer vision.")
1790 (license license:expat)))
1792 (define-public julia-imageinterminal
1794 (name "julia-imageinterminal")
1800 (url "https://github.com/JuliaImages/ImageInTerminal.jl")
1801 (commit (string-append "v" version))))
1802 (file-name (git-file-name name version))
1804 (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
1805 (build-system julia-build-system)
1807 `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
1809 `(("julia-crayons" ,julia-crayons)
1810 ("julia-imagebase" ,julia-imagebase)
1811 ("julia-imagecore" ,julia-imagecore)
1812 ("julia-requires" ,julia-requires)))
1814 ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations)
1815 ; ("julia-imagemagick" ,julia-imagemagick)
1816 ; ("julia-imagetransformations" ,julia-imagetransformations)
1817 ; ("julia-offsetarrays" ,julia-offsetarrays)
1818 ; ("julia-referencetests" ,julia-referencetests)
1819 ; ("julia-rotations" ,julia-rotations)
1820 ; ("julia-sparsearrays" ,julia-sparsearrays)
1821 ; ("julia-testimages" ,julia-testimages)))
1822 (home-page "https://github.com/JuliaImages/ImageInTerminal.jl")
1823 (synopsis "Julia package for displaying images in the terminal")
1824 (description "@code{ImageInTerminal.jl} is a drop-in package that once
1825 imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays
1826 (i.e. Images) are displayed in the interactive REPL. The displayed images will
1827 be downscaled to fit into the size of your active terminal session.")
1828 (license license:expat)))
1830 (define-public julia-imagemagick
1832 (name "julia-imagemagick")
1838 (url "https://github.com/JuliaIO/ImageMagick.jl")
1839 (commit (string-append "v" version))))
1840 (file-name (git-file-name name version))
1842 (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
1843 (build-system julia-build-system)
1846 (modify-phases %standard-phases
1847 (add-after 'unpack 'skip-failing-test
1849 ;; These tests try to download from the imagemagick.org
1850 (substitute* "test/runtests.jl"
1851 ((".*readremote\\.jl.*") ""))
1852 ;; Tests with the color gray are hard.
1853 (substitute* "test/constructed_images.jl"
1854 (("test (b == aa)" _ test) (string-append "test_nowarn " test))
1855 (("test (B == map)" _ test) (string-append "test_nowarn " test)))
1858 `(("julia-fileio" ,julia-fileio)
1859 ("julia-imagecore" ,julia-imagecore)
1860 ("julia-imagemagick-jll" ,julia-imagemagick-jll)))
1862 `(("julia-colors" ,julia-colors)
1863 ("julia-colorvectorspace" ,julia-colorvectorspace)
1864 ("julia-imagemetadata" ,julia-imagemetadata)
1865 ("julia-imageshow" ,julia-imageshow)
1866 ("julia-imagetransformations" ,julia-imagetransformations)
1867 ("julia-indirectarrays" ,julia-indirectarrays)
1868 ("julia-offsetarrays" ,julia-offsetarrays)
1869 ("julia-zipfile" ,julia-zipfile)))
1870 (home-page "https://github.com/JuliaIO/ImageMagick.jl")
1871 (synopsis "Thin wrapper for ImageMagick")
1872 (description "This package provides a wrapper around ImageMagick version 6.
1873 It was split off from @code{Images.jl} to make image I/O more modular.")
1874 (license license:expat)))
1876 (define-public julia-imagemetadata
1878 (name "julia-imagemetadata")
1884 (url "https://github.com/JuliaImages/ImageMetadata.jl")
1885 (commit (string-append "v" version))))
1886 (file-name (git-file-name name version))
1888 (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1"))))
1889 (build-system julia-build-system)
1891 `(("julia-axisarrays" ,julia-axisarrays)
1892 ("julia-imageaxes" ,julia-imageaxes)
1893 ("julia-imagecore" ,julia-imagecore)
1894 ("julia-indirectarrays" ,julia-indirectarrays)))
1896 `(("julia-offsetarrays" ,julia-offsetarrays)
1897 ("julia-simpletraits" ,julia-simpletraits)
1898 ("julia-unitful" ,julia-unitful)))
1899 (home-page "https://github.com/JuliaImages/ImageMetadata.jl")
1900 (synopsis "Julia package for images having metadata")
1901 (description "@code{ImageMetadata} is a simple package providing utilities
1902 for working with images that have metadata attached. For example, you might
1903 want to associate an image with the date on which the picture was taken, or an
1904 MRI scan with patient data, or an astronomical image with sky coordinates and
1905 information about the detector used to acquire the image.")
1906 (license license:expat)))
1908 (define-public julia-imageshow
1910 (name "julia-imageshow")
1916 (url "https://github.com/JuliaImages/ImageShow.jl")
1917 (commit (string-append "v" version))))
1918 (file-name (git-file-name name version))
1920 (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
1921 (build-system julia-build-system)
1923 `(#:tests? #f)) ; cycle with ImageMagick.jl.
1925 `(("julia-fileio" ,julia-fileio)
1926 ("julia-imagebase" ,julia-imagebase)
1927 ("julia-imagecore" ,julia-imagecore)
1928 ("julia-offsetarrays" ,julia-offsetarrays)
1929 ("julia-stackviews" ,julia-stackviews)))
1931 ; `(("julia-imagedistances" ,julia-imagedistances)
1932 ; ("julia-imagemagick" ,julia-imagemagick)
1933 ; ("julia-suppressor" ,julia-suppressor)
1934 ; ("julia-testimages" ,julia-testimages)))
1935 (home-page "https://github.com/JuliaImages/ImageShow.jl")
1937 "Inline graphical display of images in Julia graphical environments")
1938 (description "This package implements image @code{show} methods suitable
1939 for graphical platforms such as IJulia. It is intended to provide convenient
1940 inline presentation of greyscale or color images.")
1941 (license license:expat)))
1943 (define-public julia-imagetransformations
1945 (name "julia-imagetransformations")
1951 (url "https://github.com/JuliaImages/ImageTransformations.jl")
1952 (commit (string-append "v" version))))
1953 (file-name (git-file-name name version))
1955 (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
1956 (build-system julia-build-system)
1958 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1960 `(("julia-axisalgorithms" ,julia-axisalgorithms)
1961 ("julia-colorvectorspace" ,julia-colorvectorspace)
1962 ("julia-coordinatetransformations" ,julia-coordinatetransformations)
1963 ("julia-identityranges" ,julia-identityranges)
1964 ("julia-imagecore" ,julia-imagecore)
1965 ("julia-interpolations" ,julia-interpolations)
1966 ("julia-offsetarrays" ,julia-offsetarrays)
1967 ("julia-rotations" ,julia-rotations)
1968 ("julia-staticarrays" ,julia-staticarrays)))
1970 ; `(("julia-imagemagick" ,julia-imagemagick)
1971 ; ("julia-referencetests" ,julia-referencetests)
1972 ; ("julia-testimages" ,julia-testimages)))
1973 (home-page "https://github.com/JuliaImages/ImageTransformations.jl")
1974 (synopsis "Geometric transformations on images for Julia")
1975 (description "This package provides support for image resizing, image
1976 rotation, and other spatial transformations of arrays.")
1977 (license license:expat)))
1979 (define-public julia-indexing
1981 (name "julia-indexing")
1987 (url "https://github.com/andyferris/Indexing.jl")
1988 (commit (string-append "v" version))))
1989 (file-name (git-file-name name version))
1991 (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx"))))
1992 (build-system julia-build-system)
1993 (home-page "https://github.com/andyferris/Indexing.jl")
1994 (synopsis "Generalized indexing for Julia")
1995 (description "This package defines functions for getting multiple indices
1996 out of dictionaries, tuples, etc, extending this ability beyond
1997 @code{AbstractArray}.")
1998 (license license:expat)))
2000 (define-public julia-indirectarrays
2002 (name "julia-indirectarrays")
2008 (url "https://github.com/JuliaArrays/IndirectArrays.jl")
2009 (commit (string-append "v" version))))
2010 (file-name (git-file-name name version))
2012 (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s"))))
2013 (build-system julia-build-system)
2015 `(("julia-colors" ,julia-colors)
2016 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2017 ("julia-mappedarrays" ,julia-mappedarrays)))
2018 (home-page "https://github.com/JuliaArrays/IndirectArrays.jl")
2019 (synopsis "Julia implementation of indexed arrays")
2020 (description "An @code{IndirectArray} is one that encodes data using a
2021 combination of an @code{index} and a @code{value} table. Each element is
2022 assigned its own index, which is used to retrieve the value from the
2023 @code{value} table. Among other uses, @code{IndirectArrays} can represent
2024 indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
2025 (license license:expat)))
2027 (define-public julia-inifile
2029 (name "julia-inifile")
2035 (url "https://github.com/JuliaIO/IniFile.jl")
2036 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
2037 (file-name (git-file-name name version))
2039 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
2040 (build-system julia-build-system)
2041 (home-page "https://github.com/JuliaIO/IniFile.jl")
2042 (synopsis "Reading Windows-style INI files")
2043 (description "This is a Julia package that defines an IniFile type that
2044 interfaces with @file{.ini} files.")
2045 (license license:expat)))
2047 (define-public julia-interpolations
2049 (name "julia-interpolations")
2055 (url "https://github.com/JuliaMath/Interpolations.jl")
2056 (commit (string-append "v" version))))
2057 (file-name (git-file-name name version))
2059 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
2060 (build-system julia-build-system)
2062 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2063 ("julia-offsetarrays" ,julia-offsetarrays)
2064 ("julia-ratios" ,julia-ratios)
2065 ("julia-requires" ,julia-requires)
2066 ("julia-staticarrays" ,julia-staticarrays)
2067 ("julia-woodburymatrices" ,julia-woodburymatrices)))
2069 `(("julia-dualnumbers" ,julia-dualnumbers)
2070 ("julia-forwarddiff" ,julia-forwarddiff)
2071 ("julia-offsetarrays" ,julia-offsetarrays)
2072 ("julia-unitful" ,julia-unitful)
2073 ("julia-zygote" ,julia-zygote)))
2074 (home-page "https://github.com/JuliaMath/Interpolations.jl")
2075 (synopsis "Continuous interpolation of discrete datasets")
2076 (description "This package implements a variety of interpolation schemes for
2077 the Julia language. It has the goals of ease-of-use, broad algorithmic support,
2078 and exceptional performance.")
2079 (license license:expat)))
2081 (define-public julia-intervalsets
2083 (name "julia-intervalsets")
2089 (url "https://github.com/JuliaMath/IntervalSets.jl")
2090 (commit (string-append "v" version))))
2091 (file-name (git-file-name name version))
2093 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
2094 (build-system julia-build-system)
2096 `(("julia-ellipsisnotation" ,julia-ellipsisnotation)))
2098 `(("julia-offsetarrays" ,julia-offsetarrays)))
2099 (home-page "https://github.com/JuliaMath/IntervalSets.jl")
2100 (synopsis "Interval Sets for Julia")
2101 (description "This package is intended to implement a \"minimal\" foundation
2102 for intervals upon which other packages might build. In particular, we
2103 encourage type-piracy for the reason that only one interval package can
2104 unambiguously define the @code{..} and @code{±} operators.")
2105 (license license:expat)))
2107 (define-public julia-invertedindices
2109 (name "julia-invertedindices")
2115 (url "https://github.com/mbauman/InvertedIndices.jl")
2116 (commit (string-append "v" version))))
2117 (file-name (git-file-name name version))
2119 (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46"))))
2120 (build-system julia-build-system)
2122 `(("julia-offsetarrays" ,julia-offsetarrays)))
2123 (home-page "https://github.com/mbauman/InvertedIndices.jl")
2124 (synopsis "Index type that allows for inverted selections")
2125 (description "This package just exports one type: the @code{InvertedIndex},
2126 or @code{Not} for short. It can wrap any supported index type and may be used
2127 as an index into any @code{AbstractArray} subtype, including OffsetArrays.")
2128 (license license:expat)))
2130 (define-public julia-iocapture
2132 (name "julia-iocapture")
2138 (url "https://github.com/JuliaDocs/IOCapture.jl")
2139 (commit (string-append "v" version))))
2140 (file-name (git-file-name name version))
2142 (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb"))))
2143 (build-system julia-build-system)
2144 (home-page "https://github.com/JuliaDocs/IOCapture.jl")
2145 (synopsis "Capture standard output and error streams")
2146 (description "This package provides the @code{IOCapture.capture(f)}
2147 function, which captures the standard output and standard error, and returns it
2148 as a string together with the return value.")
2149 (license license:expat)))
2151 (define-public julia-irtools
2153 (name "julia-irtools")
2159 (url "https://github.com/FluxML/IRTools.jl")
2160 (commit (string-append "v" version))))
2161 (file-name (git-file-name name version))
2163 (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql"))))
2165 '(#:tests? #f)) ;require Documenter, not packaged yet
2166 (build-system julia-build-system)
2168 `(("julia-macrotools" ,julia-macrotools)))
2169 (home-page "https://github.com/FluxML/IRTools.jl")
2170 (synopsis "Simple and flexible IR format")
2171 (description "This package provides a simple and flexible IR format,
2172 expressive enough to work with both lowered and typed Julia code, as well as
2173 external IRs. It can be used with Julia metaprogramming tools such as
2175 (license license:expat)))
2177 (define-public julia-iteratorinterfaceextensions
2179 (name "julia-iteratorinterfaceextensions")
2185 (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2186 (commit (string-append "v" version))))
2187 (file-name (git-file-name name version))
2189 (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"))))
2190 (build-system julia-build-system)
2191 (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2192 (synopsis "Traits for Julia iterators")
2193 (description "IteratorInterfaceExtensions defines a small number of
2194 extensions to the iterator interface.")
2195 (license license:expat)))
2197 (define-public julia-itertools
2199 (name "julia-itertools")
2205 (url "https://github.com/JuliaCollections/IterTools.jl")
2206 (commit (string-append "v" version))))
2207 (file-name (git-file-name name version))
2209 (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq"))))
2210 (build-system julia-build-system)
2211 (home-page "https://github.com/JuliaCollections/IterTools.jl")
2212 (synopsis "Common functional iterator patterns")
2214 "Common functional iterator patterns (formerly @code{Iterators.jl}).")
2215 (license license:expat)))
2217 (define-public julia-json
2225 (url "https://github.com/JuliaIO/JSON.jl")
2226 (commit (string-append "v" version))))
2227 (file-name (git-file-name name version))
2229 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
2230 (build-system julia-build-system)
2232 `(("julia-datastructures" ,julia-datastructures)
2233 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2234 ("julia-parsers" ,julia-parsers)
2235 ("julia-offsetarrays" ,julia-offsetarrays)))
2236 (home-page "https://github.com/JuliaIO/JSON.jl")
2237 (synopsis "JSON parsing and printing library for Julia")
2238 (description "@code{JSON.jl} is a pure Julia module which supports parsing
2239 and printing JSON documents.")
2240 (license license:expat)))
2242 (define-public julia-json3
2244 (name "julia-json3")
2250 (url "https://github.com/quinnj/JSON3.jl")
2251 (commit (string-append "v" version))))
2252 (file-name (git-file-name name version))
2254 (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17"))))
2255 (build-system julia-build-system)
2257 `(("julia-parsers" ,julia-parsers)
2258 ("julia-structtypes" ,julia-structtypes)))
2259 (home-page "https://github.com/quinnj/JSON3.jl")
2260 (synopsis "JSON package for Julia")
2261 (description "This package provides another JSON package for Julia, with a
2262 focus on speed and slick struct mapping.")
2263 (license license:expat)))
2265 (define-public julia-lazyarrays
2267 (name "julia-lazyarrays")
2273 (url "https://github.com/JuliaArrays/LazyArrays.jl")
2274 (commit (string-append "v" version))))
2275 (file-name (git-file-name name version))
2277 (base32 "1vdli4zr94xhrx5bpvrqiysz21nzlcgmqz0zhza1ayw0zjgzihfw"))))
2278 (build-system julia-build-system)
2280 `(("julia-arraylayouts" ,julia-arraylayouts)
2281 ("julia-fillarrays" ,julia-fillarrays)
2282 ("julia-macrotools" ,julia-macrotools)
2283 ("julia-matrixfactorizations" ,julia-matrixfactorizations)
2284 ("julia-staticarrays" ,julia-staticarrays)))
2286 `(("julia-tracker" ,julia-tracker)))
2287 (home-page "https://github.com/JuliaArrays/LazyArrays.jl")
2288 (synopsis "Lazy arrays and linear algebra")
2289 (description "This package supports lazy analogues of array operations like
2290 @code{vcat}, @code{hcat}, and multiplication. This helps with the
2291 implementation of matrix-free methods for iterative solvers.")
2292 (license license:expat)))
2294 (define-public julia-logexpfunctions
2296 (name "julia-logexpfunctions")
2302 (url "https://github.com/JuliaStats/LogExpFunctions.jl")
2303 (commit (string-append "v" version))))
2304 (file-name (git-file-name name version))
2306 (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n"))))
2307 (build-system julia-build-system)
2309 `(("julia-docstringextensions" ,julia-docstringextensions)))
2311 `(("julia-offsetarrays" ,julia-offsetarrays)))
2312 (home-page "https://github.com/JuliaStats/LogExpFunctions.jl")
2313 (synopsis "Special functions based on @code{log} and @code{exp}")
2314 (description "Various special functions based on log and exp moved from
2315 @code{StatsFuns.jl} into a separate package, to minimize dependencies. These
2316 functions only use native Julia code, so there is no need to depend on
2317 @code{librmath} or similar libraries.")
2318 (license license:expat)))
2320 (define-public julia-macrotools
2322 (name "julia-macrotools")
2328 (url "https://github.com/FluxML/MacroTools.jl")
2329 (commit (string-append "v" version))))
2330 (file-name (git-file-name name version))
2332 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
2333 (build-system julia-build-system)
2334 (home-page "https://fluxml.ai/MacroTools.jl")
2335 (synopsis "Tools for working with Julia code and expressions")
2336 (description "This library provides tools for working with Julia code and
2337 expressions. This includes a template-matching system and code-walking tools
2338 that let you do deep transformations of code.")
2339 (license license:expat)))
2341 (define-public julia-mappedarrays
2343 (name "julia-mappedarrays")
2349 (url "https://github.com/JuliaArrays/MappedArrays.jl")
2350 (commit (string-append "v" version))))
2351 (file-name (git-file-name name version))
2353 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
2354 (build-system julia-build-system)
2356 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
2358 `(("julia-colortypes" ,julia-colortypes)
2359 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2360 ("julia-offsetarrays" ,julia-offsetarrays)))
2361 (home-page "https://github.com/JuliaArrays/MappedArrays.jl")
2362 (synopsis "Lazy in-place transformations of arrays")
2363 (description "This package implements \"lazy\" in-place elementwise
2364 transformations of arrays for the Julia programming language. Explicitly, it
2365 provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a
2366 specified (but arbitrary) function f, without ever having to compute M
2367 explicitly (in the sense of allocating storage for M). The name of the package
2368 comes from the fact that @code{M == map(f, A)}.")
2369 (license license:expat)))
2371 (define-public julia-matrixfactorizations
2373 (name "julia-matrixfactorizations")
2379 (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2380 (commit (string-append "v" version))))
2381 (file-name (git-file-name name version))
2383 (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb"))))
2384 (build-system julia-build-system)
2387 (modify-phases %standard-phases
2388 (add-after 'unpack 'skip-failing-test
2390 ;; Tests with math functions are hard.
2391 (substitute* "test/test_ul.jl"
2392 (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
2393 ;; Also skip the REPL test.
2394 (("test String") "test_nowarn String"))
2397 `(("julia-arraylayouts" ,julia-arraylayouts)))
2398 (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2399 (synopsis "Julia package to contain non-standard matrix factorizations")
2400 (description "A Julia package to contain non-standard matrix factorizations.
2401 At the moment it implements the QL, RQ, and UL factorizations, a combined
2402 Cholesky factorization with inverse, and polar decompositions. In the future it
2403 may include other factorizations such as the LQ factorization.")
2404 (license license:expat)))
2406 (define-public julia-mbedtls
2408 (name "julia-mbedtls")
2414 (url "https://github.com/JuliaLang/MbedTLS.jl")
2415 (commit (string-append "v" version))))
2416 (file-name (git-file-name name version))
2418 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
2419 (build-system julia-build-system)
2422 (modify-phases %standard-phases
2423 (add-before 'install 'disable-network-tests
2424 ;; Tries to connect to httpbin.org
2426 (substitute* "test/runtests.jl"
2427 (("testhost =") "return #"))
2429 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
2430 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
2431 (synopsis "Apache's mbed TLS library wrapper")
2432 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
2433 TLS} and cryptography C library for Julia.")
2434 (license license:expat)))
2436 (define-public julia-measures
2438 (name "julia-measures")
2444 (url "https://github.com/JuliaGraphics/Measures.jl")
2445 (commit (string-append "v" version))))
2446 (file-name (git-file-name name version))
2448 (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l"))))
2449 (build-system julia-build-system)
2450 (home-page "https://github.com/JuliaGraphics/Measures.jl")
2451 (synopsis "Unified measure and coordinates types")
2452 (description "This library generalizes and unifies the notion of measures
2453 used in Compose, Compose3D, and Escher. It allows building up and representing
2454 expressions involving differing types of units that are then evaluated,
2455 resolving them into absolute units.")
2456 (license license:expat)))
2458 (define-public julia-missings
2460 (name "julia-missings")
2466 (url "https://github.com/JuliaData/Missings.jl")
2467 (commit (string-append "v" version))))
2468 (file-name (git-file-name name version))
2470 (base32 "131ma44yvswvj85jdjhm37frzfz46cc60lwj65a9jcmgc77dshsm"))))
2471 (build-system julia-build-system)
2473 `(("julia-dataapi" ,julia-dataapi)))
2474 (home-page "https://github.com/JuliaData/Missings.jl")
2475 (synopsis "Additional missing value support for Julia")
2476 (description "This package provides additional functionality for working
2477 with @code{missing} values in Julia.")
2478 (license license:expat)))
2480 (define-public julia-mocking
2482 (name "julia-mocking")
2488 (url "https://github.com/invenia/Mocking.jl")
2489 (commit (string-append "v" version))))
2490 (file-name (git-file-name name version))
2492 (base32 "10jz716v6i3gpd403rmcrip6cncjl9lqr12cdl321x1994a5g8ck"))))
2493 (build-system julia-build-system)
2495 `(("julia-exprtools" ,julia-exprtools)))
2496 (home-page "https://github.com/invenia/Mocking.jl")
2497 (synopsis "Overload Julia function calls")
2498 (description "The purpose of this package is to allow Julia function calls
2499 to be temporarily overloaded for the purpose of testing.")
2500 (license license:expat)))
2502 (define-public julia-mosaicviews
2504 (name "julia-mosaicviews")
2510 (url "https://github.com/JuliaArrays/MosaicViews.jl")
2511 (commit (string-append "v" version))))
2512 (file-name (git-file-name name version))
2514 (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
2515 (build-system julia-build-system)
2517 `(#:tests? #f)) ; Cycle with ImageCore.jl
2519 `(("julia-mappedarrays" ,julia-mappedarrays)
2520 ("julia-paddedviews" ,julia-paddedviews)
2521 ("julia-stackviews" ,julia-stackviews)))
2523 ; `(("julia-colorvectorspace" ,julia-colorvectorspace)
2524 ; ("julia-imagecore" ,julia-imagecore)))
2525 (home-page "https://github.com/JuliaArrays/MosaicViews.jl")
2527 "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices")
2528 (description "When visualizing images, it is not uncommon to provide a 2D
2529 view of different image sources. For example, comparing multiple images of
2530 different sizes, getting a preview of machine learning dataset. This package
2531 aims to provide easy-to-use tools for such tasks.")
2532 (license license:expat)))
2534 (define-public julia-msgpack
2536 (name "julia-msgpack")
2542 (url "https://github.com/JuliaIO/MsgPack.jl")
2543 (commit (string-append "v" version))))
2544 (file-name (git-file-name name version))
2546 (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
2547 (build-system julia-build-system)
2548 (home-page "https://github.com/JuliaIO/MsgPack.jl")
2549 (synopsis "Julia MsgPack implementation")
2550 (description "@code{MsgPack.jl} is a MessagePack implementation in pure
2551 Julia, with type-driven, overloadable packing/unpacking functionality.")
2552 (license license:expat)))
2554 (define-public julia-mutablearithmetics
2556 (name "julia-mutablearithmetics")
2562 (url "https://github.com/jump-dev/MutableArithmetics.jl")
2563 (commit (string-append "v" version))))
2564 (file-name (git-file-name name version))
2566 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f"))))
2567 (build-system julia-build-system)
2569 `(("julia-offsetarrays" ,julia-offsetarrays)))
2570 (home-page "https://github.com/jump-dev/MutableArithmetics.jl")
2571 (synopsis "Interface for arithmetics on mutable types in Julia")
2572 (description "MutableArithmetics is a Julia package which allows:
2574 @item mutable types to implement mutable arithmetics
2575 @item algorithms that could exploit mutable arithmetics to exploit them while
2576 still being completely generic
2578 (license license:mpl2.0)))
2580 (define-public julia-nanmath
2582 (name "julia-nanmath")
2588 (url "https://github.com/mlubin/NaNMath.jl")
2589 (commit (string-append "v" version))))
2590 (file-name (git-file-name name version))
2592 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
2593 (build-system julia-build-system)
2594 (home-page "https://github.com/mlubin/NaNMath.jl")
2595 (synopsis "Implementations of basic math functions")
2596 (description "Implementations of basic math functions which return
2597 @code{NaN} instead of throwing a @code{DomainError}.")
2598 (license license:expat)))
2600 (define-public julia-nlsolversbase
2602 (name "julia-nlsolversbase")
2608 (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2609 (commit (string-append "v" version))))
2610 (file-name (git-file-name name version))
2612 (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98"))))
2613 (build-system julia-build-system)
2615 `(("julia-diffresults" ,julia-diffresults)
2616 ("julia-finitediff" ,julia-finitediff)
2617 ("julia-forwarddiff" ,julia-forwarddiff)))
2619 `(("julia-optimtestproblems" ,julia-optimtestproblems)
2620 ("julia-recursivearraytools" ,julia-recursivearraytools)))
2621 (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2622 (synopsis "Optimization and equation solver software in JuliaNLSolvers")
2623 (description "This package aims at establishing common ground for Optim.jl,
2624 LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to
2625 hold objective related callables, information about the objectives, and an
2626 interface to interact with these types.")
2627 (license license:expat)))
2629 (define-public julia-nnlib
2631 (name "julia-nnlib")
2637 (url "https://github.com/FluxML/NNlib.jl")
2638 (commit (string-append "v" version))))
2639 (file-name (git-file-name name version))
2641 (base32 "0vp4kcn9ivkhmqgkyvnabcdqi6pv7ghbmjc1llkwv1kzhylyf86p"))))
2642 (build-system julia-build-system)
2644 `(#:tests? #f ; Test suite not updated for ChainRulesTestUtils-1.0.
2646 (modify-phases %standard-phases
2647 (add-after 'unpack 'drop-cuda-support
2649 (substitute* "test/runtests.jl"
2650 (("using CUDA") ""))
2651 (setenv "NNLIB_TEST_CUDA" "false"))))))
2653 `(("julia-adapt" ,julia-adapt)
2654 ("julia-chainrulescore" ,julia-chainrulescore)
2655 ("julia-requires" ,julia-requires)))
2657 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
2658 ("julia-stablerngs" ,julia-stablerngs)
2659 ("julia-zygote" ,julia-zygote)))
2660 (home-page "https://github.com/FluxML/NNlib.jl")
2661 (synopsis "Neural Network primitives with multiple backends")
2662 (description "This package will provide a library of functions useful for
2663 machine learning, such as softmax, sigmoid, convolutions and pooling. It
2664 doesn't provide any other \"high-level\" functionality like layers or AD.")
2665 (license license:expat)))
2667 (define-public julia-optimtestproblems
2669 (name "julia-optimtestproblems")
2675 (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2676 (commit (string-append "v" version))))
2677 (file-name (git-file-name name version))
2679 (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
2680 (build-system julia-build-system)
2682 `(#:julia-package-name "OptimTestProblems"))
2683 (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2684 (synopsis "Collection of optimization test problems")
2685 (description "The purpose of this package is to provide test problems for
2686 JuliaNLSolvers packages.")
2687 (license license:expat)))
2689 (define-public julia-orderedcollections
2691 (name "julia-orderedcollections")
2697 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
2698 (commit (string-append "v" version))))
2699 (file-name (git-file-name name version))
2701 (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
2702 (build-system julia-build-system)
2703 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
2704 (synopsis "Associative containers that preserve insertion order")
2705 (description "This package implements @code{OrderedDicts} and
2706 @code{OrderedSets}, which are similar to containers in base Julia. However,
2707 during iteration the @code{Ordered*} containers return items in the order in
2708 which they were added to the collection.")
2709 (license license:expat)))
2711 (define-public julia-offsetarrays
2713 (name "julia-offsetarrays")
2719 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
2720 (commit (string-append "v" version))))
2721 (file-name (git-file-name name version))
2723 (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc"))))
2724 (build-system julia-build-system)
2726 `(("julia-adapt" ,julia-adapt)))
2727 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
2728 (arguments '(#:tests? #f))
2729 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
2730 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
2731 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
2732 have arbitrary indices, similar to those found in some other programming
2733 languages like Fortran.")
2734 (license license:expat)))
2736 (define-public julia-paddedviews
2738 (name "julia-paddedviews")
2744 (url "https://github.com/JuliaArrays/PaddedViews.jl")
2745 (commit (string-append "v" version))))
2746 (file-name (git-file-name name version))
2748 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h"))))
2749 (build-system julia-build-system)
2751 '(#:tests? #f)) ;require Documenter, not packaged yet
2753 `(("julia-offsetarrays" ,julia-offsetarrays)))
2754 (home-page "https://github.com/JuliaArrays/PaddedViews.jl")
2755 (synopsis "Add virtual padding to the edges of an array")
2756 (description "@code{PaddedViews} provides a simple wrapper type,
2757 @code{PaddedView}, to add \"virtual\" padding to any array without copying data.
2758 Edge values not specified by the array are assigned a @code{fillvalue}.
2759 Multiple arrays may be \"promoted\" to have common indices using the
2760 @code{paddedviews} function.")
2761 (license license:expat)))
2763 (define-public julia-parameters
2765 (name "julia-parameters")
2771 (url "https://github.com/mauro3/Parameters.jl")
2772 (commit (string-append "v" version))))
2773 (file-name (git-file-name name version))
2775 (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
2776 (build-system julia-build-system)
2778 `(("julia-orderedcollections" ,julia-orderedcollections)
2779 ("julia-unpack" ,julia-unpack)))
2780 (home-page "https://github.com/mauro3/Parameters.jl")
2781 (synopsis "Numerical-model parameter helpers")
2782 (description "This package contains types with default field values, keyword
2783 constructors and (un-)pack macros. Keyword functions can be slow in Julia,
2784 however, the normal positional constructor is also provided and could be used in
2785 performance critical code.")
2786 (license license:expat)))
2788 (define-public julia-parsers
2790 (name "julia-parsers")
2796 (url "https://github.com/JuliaData/Parsers.jl")
2797 (commit (string-append "v" version))))
2798 (file-name (git-file-name name version))
2800 (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
2801 (build-system julia-build-system)
2802 (home-page "https://github.com/JuliaData/Parsers.jl")
2803 (synopsis "Fast parsing machinery for basic types in Julia")
2804 (description "@code{Parsers.jl} is a collection of type parsers and
2805 utilities for Julia.")
2806 (license license:expat)))
2808 (define-public julia-pdmats
2810 (name "julia-pdmats")
2816 (url "https://github.com/JuliaStats/PDMats.jl")
2817 (commit (string-append "v" version))))
2818 (file-name (git-file-name name version))
2820 (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0"))))
2821 (build-system julia-build-system)
2822 (home-page "https://github.com/JuliaStats/PDMats.jl")
2824 "Uniform Interface for positive definite matrices of various structures")
2825 (description "PDMats.jl supports efficient computation on positive definite
2826 matrices of various structures. In particular, it provides uniform interfaces
2827 to use positive definite matrices of various structures for writing generic
2828 algorithms, while ensuring that the most efficient implementation is used in
2829 actual computation.")
2830 (license license:expat)))
2832 (define-public julia-plotthemes
2834 (name "julia-plotthemes")
2840 (url "https://github.com/JuliaPlots/PlotThemes.jl")
2841 (commit (string-append "v" version))))
2842 (file-name (git-file-name name version))
2844 (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh"))))
2845 (build-system julia-build-system)
2847 `(("julia-plotutils" ,julia-plotutils)
2848 ("julia-requires" ,julia-requires)))
2849 (home-page "https://github.com/JuliaPlots/PlotThemes.jl")
2850 (synopsis "Themes for the Julia plotting package Plots.jl")
2852 "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.")
2853 (license license:expat)))
2855 (define-public julia-plotutils
2857 (name "julia-plotutils")
2863 (url "https://github.com/JuliaPlots/PlotUtils.jl")
2864 (commit (string-append "v" version))))
2865 (file-name (git-file-name name version))
2867 (base32 "0pqd3yvs3w48sr50c8rcqk5pzvpdy9nf4kimcvyz9dvwc3jgh6rd"))))
2868 (build-system julia-build-system)
2870 `(("julia-colors" ,julia-colors)
2871 ("julia-colorschemes" ,julia-colorschemes)
2872 ("julia-reexport" ,julia-reexport)))
2874 `(("julia-stablerngs" ,julia-stablerngs)))
2875 (home-page "https://github.com/JuliaPlots/PlotUtils.jl")
2876 (synopsis "Helper algorithms for building plotting components")
2877 (description "This package contains generic helper algorithms for building
2878 plotting components.")
2879 (license license:expat)))
2881 (define-public julia-pooledarrays
2883 (name "julia-pooledarrays")
2889 (url "https://github.com/JuliaData/PooledArrays.jl")
2890 (commit (string-append "v" version))))
2891 (file-name (git-file-name name version))
2893 (base32 "0ihvhzkxdw4qf0i6sbrickhdcwkmlin9zyixxn9xvgzm8nc0iwqy"))))
2894 (build-system julia-build-system)
2896 `(("julia-dataapi" ,julia-dataapi)))
2897 (home-page "https://github.com/JuliaData/PooledArrays.jl")
2898 (synopsis "Pooled representation of arrays in Julia")
2899 (description "This package provides a pooled representation of arrays for
2900 purposes of compression when there are few unique elements.")
2901 (license license:expat)))
2903 (define-public julia-positivefactorizations
2905 (name "julia-positivefactorizations")
2911 (url "https://github.com/timholy/PositiveFactorizations.jl")
2912 (commit (string-append "v" version))))
2913 (file-name (git-file-name name version))
2915 (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23"))))
2916 (build-system julia-build-system)
2918 `(("julia-forwarddiff" ,julia-forwarddiff)
2919 ("julia-reversediff" ,julia-reversediff)))
2920 (home-page "https://github.com/timholy/PositiveFactorizations.jl")
2921 (synopsis "Positive-definite \"approximations\" to matrices")
2922 (description "@code{PositiveFactorizations} is a package for computing a
2923 positive definite matrix decomposition (factorization) from an arbitrary
2924 symmetric input. The motivating application is optimization (Newton or
2925 quasi-Newton methods), in which the canonical search direction -H/g (H being the
2926 Hessian and g the gradient) may not be a descent direction if H is not positive
2928 (license license:expat)))
2930 (define-public julia-preferences
2932 (name "julia-preferences")
2938 (url "https://github.com/JuliaPackaging/Preferences.jl")
2939 (commit (string-append "v" version))))
2940 (file-name (git-file-name name version))
2942 (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
2943 (build-system julia-build-system)
2945 `(#:tests? #f)) ; Tests try to mkdir /.julia
2946 (home-page "https://github.com/JuliaPackaging/Preferences.jl")
2947 (synopsis "Store configuration switches to TOML files")
2948 (description "The @code{Preferences} package provides an integrated way for
2949 packages to store configuration switches to persistent TOML files, and use those
2950 pieces of information at both run time and compile time in Julia. This enables
2951 the user to modify the behavior of a package, and have that choice reflected in
2952 everything from run time algorithm choice to code generation at compile time.")
2953 (license license:expat)))
2955 (define-public julia-prettytables
2957 (name "julia-prettytables")
2963 (url "https://github.com/ronisbr/PrettyTables.jl")
2964 (commit (string-append "v" version))))
2965 (file-name (git-file-name name version))
2967 (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
2968 (build-system julia-build-system)
2971 (modify-phases %standard-phases
2972 (add-after 'unpack 'skip-color-tests
2974 (substitute* "test/text_backend.jl"
2975 ((".*colors\\.jl.*") ""))
2978 `(("julia-crayons" ,julia-crayons)
2979 ("julia-formatting" ,julia-formatting)
2980 ("julia-reexport" ,julia-reexport)
2981 ("julia-tables" ,julia-tables)))
2982 (home-page "https://github.com/ronisbr/PrettyTables.jl")
2983 (synopsis "Print data in formatted tables")
2984 (description "This package has the purpose to print data in matrices in a
2985 human-readable format.")
2986 (license license:expat)))
2988 (define-public julia-quadmath
2990 (name "julia-quadmath")
2996 (url "https://github.com/JuliaMath/Quadmath.jl")
2997 (commit (string-append "v" version))))
2998 (file-name (git-file-name name version))
3000 (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
3001 (build-system julia-build-system)
3004 (modify-phases %standard-phases
3005 (add-after 'unpack 'hardcode-libmath-location
3006 (lambda* (#:key inputs #:allow-other-keys)
3007 (let ((gcclib (assoc-ref inputs "gcc:lib")))
3008 (substitute* "src/Quadmath.jl"
3009 (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
3010 (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
3013 `(("julia-requires" ,julia-requires)))
3015 `(("gcc:lib" ,gcc "lib")))
3017 `(("julia-specialfunctions" ,julia-specialfunctions)))
3018 (home-page "https://github.com/JuliaMath/Quadmath.jl")
3019 (synopsis "Float128 and libquadmath for the Julia language")
3020 (description "This is a Julia interface to @code{libquadmath}, providing a
3021 @code{Float128} type corresponding to the IEEE754 binary128 floating point
3023 (license license:expat)))
3025 (define-public julia-quaternions
3027 (name "julia-quaternions")
3033 (url "https://github.com/JuliaGeometry/Quaternions.jl")
3034 (commit (string-append "v" version))))
3035 (file-name (git-file-name name version))
3037 (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s"))))
3038 (build-system julia-build-system)
3040 `(("julia-dualnumbers" ,julia-dualnumbers)))
3041 (home-page "https://github.com/JuliaGeometry/Quaternions.jl")
3042 (synopsis "Quaternion and dual-quaternion functionality")
3043 (description "Quaternions are best known for their suitability as
3044 representations of 3D rotational orientation. They can also be viewed as an
3045 extension of complex numbers.")
3046 (license license:expat)))
3048 (define-public julia-queryoperators
3050 (name "julia-queryoperators")
3056 (url "https://github.com/queryverse/QueryOperators.jl")
3057 (commit (string-append "v" version))))
3058 (file-name (git-file-name name version))
3060 (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22"))))
3061 (build-system julia-build-system)
3063 `(("julia-datastructures" ,julia-datastructures)
3064 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3065 ("julia-tableshowutils" ,julia-tableshowutils)))
3066 (home-page "https://github.com/queryverse/QueryOperators.jl")
3067 (synopsis "Query operators for Julia")
3068 (description "This package contains the underlying query operators that are
3069 exposed to users in @code{Query.jl}.")
3070 (license license:expat)))
3072 (define-public julia-rangearrays
3074 (name "julia-rangearrays")
3080 (url "https://github.com/JuliaArrays/RangeArrays.jl")
3081 (commit (string-append "v" version))))
3082 (file-name (git-file-name name version))
3084 (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg"))))
3085 (build-system julia-build-system)
3086 (home-page "https://github.com/JuliaArrays/RangeArrays.jl")
3087 (synopsis "Array data structures with autogenerated columns")
3088 (description "The goal of RangeArrays is to provide efficient and convenient
3089 array data structures where the columns of the arrays are generated (on the fly)
3091 (license license:expat)))
3093 (define-public julia-ratios
3095 (name "julia-ratios")
3101 (url "https://github.com/timholy/Ratios.jl")
3102 (commit (string-append "v" version))))
3103 (file-name (git-file-name name version))
3105 (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh"))))
3106 (build-system julia-build-system)
3107 (home-page "https://github.com/timholy/Ratios.jl")
3108 (synopsis "Faster Rational-like types for Julia")
3109 (description "This package provides types similar to Julia's @code{Rational}
3110 type, which make some sacrifices but have better computational performance.")
3111 (license license:expat)))
3113 (define-public julia-recipesbase
3115 (name "julia-recipesbase")
3121 (url "https://github.com/JuliaPlots/RecipesBase.jl")
3122 (commit (string-append "v" version))))
3123 (file-name (git-file-name name version))
3125 (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
3126 (build-system julia-build-system)
3127 (home-page "https://github.com/JuliaPlots/RecipesBase.jl")
3128 (synopsis "Define transformation recipes on user types")
3129 (description "This package implements handy macros @code{@@recipe} and
3130 @code{@@series} which will define a custom transformation and attach attributes
3131 for user types. Its design is an attempt to simplify and generalize the summary
3132 and display of types and data from external packages. With this package it is
3133 possible to describe visualization routines that can be used as components in
3134 more complex visualizations.")
3135 (license license:expat)))
3137 (define-public julia-recipespipeline
3139 (name "julia-recipespipeline")
3145 (url "https://github.com/JuliaPlots/RecipesPipeline.jl")
3146 (commit (string-append "v" version))))
3147 (file-name (git-file-name name version))
3149 (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7"))))
3150 (build-system julia-build-system)
3152 `(#:tests? #f)) ; Cycle with Plots.jl.
3154 `(("julia-nanmath" ,julia-nanmath)
3155 ("julia-plotutils" ,julia-plotutils)
3156 ("julia-recipesbase" ,julia-recipesbase)))
3157 (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/")
3158 (synopsis "Utilities for processing recipes")
3159 (description "This package was factored out of @code{Plots.jl} to allow any
3160 other plotting package to use the recipe pipeline. In short, the extremely
3161 lightweight @code{RecipesBase.jl} package can be depended on by any package to
3162 define \"recipes\": plot specifications of user-defined types, as well as custom
3163 plot types. @code{RecipePipeline.jl} contains the machinery to translate these
3164 recipes to full specifications for a plot.")
3165 (license license:expat)))
3167 (define-public julia-recursivearraytools
3169 (name "julia-recursivearraytools")
3175 (url "https://github.com/SciML/RecursiveArrayTools.jl")
3176 (commit (string-append "v" version))))
3177 (file-name (git-file-name name version))
3179 (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
3180 (build-system julia-build-system)
3182 `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
3184 `(("julia-arrayinterface" ,julia-arrayinterface)
3185 ("julia-chainrulescore" ,julia-chainrulescore)
3186 ("julia-docstringextensions" ,julia-docstringextensions)
3187 ("julia-recipesbase" ,julia-recipesbase)
3188 ("julia-requires" ,julia-requires)
3189 ("julia-staticarrays" ,julia-staticarrays)
3190 ("julia-zygoterules" ,julia-zygoterules)))
3192 ; `(("julia-forwarddiff" ,julia-forwarddiff)
3193 ; ("julia-nlsolve" ,julia-nlsolve)
3194 ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq)
3195 ; ("julia-structarrays" ,julia-structarrays)
3196 ; ("julia-zygote" ,julia-zygote)))
3197 (home-page "https://github.com/SciML/RecursiveArrayTools.jl")
3198 (synopsis "Tools for handling objects like arrays of arrays and deeper nestings")
3199 (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with
3200 recursive arrays like arrays of arrays.")
3201 (license license:expat)))
3203 (define-public julia-reexport
3205 (name "julia-reexport")
3211 (url "https://github.com/simonster/Reexport.jl")
3212 (commit (string-append "v" version))))
3213 (file-name (git-file-name name version))
3215 (base32 "1wj4vnxxmnblm6ajkkdvwb7v4835qrrc406q5is74qv1n68xql7l"))))
3216 (build-system julia-build-system)
3217 (home-page "https://github.com/simonster/Reexport.jl")
3218 (synopsis "Re-export modules and symbols")
3219 (description "This package provides tools to re-export modules and symbols.")
3220 (license license:expat)))
3222 (define-public julia-referencetests
3224 (name "julia-referencetests")
3230 (url "https://github.com/JuliaTesting/ReferenceTests.jl")
3231 (commit (string-append "v" version))))
3232 (file-name (git-file-name name version))
3234 (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
3235 (build-system julia-build-system)
3237 `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
3239 `(("julia-deepdiffs" ,julia-deepdiffs)
3240 ("julia-distances" ,julia-distances)
3241 ("julia-fileio" ,julia-fileio)
3242 ("julia-imagecore" ,julia-imagecore)
3243 ("julia-imageinterminal" ,julia-imageinterminal)))
3245 ; `(("julia-csvfiles" ,julia-csvfiles)
3246 ; ("julia-dataframes" ,julia-dataframes)
3247 ; ("julia-gr" ,julia-gr)
3248 ; ("julia-imagemagick" ,julia-imagemagick)
3249 ; ("julia-imagetransformations" ,julia-imagetransformations)
3250 ; ("julia-plots" ,julia-plots)
3251 ; ("julia-testimages" ,julia-testimages)))
3252 (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/")
3253 (synopsis "Utility package for comparing data against reference files")
3254 (description "@code{ReferenceTests.jl} is a Julia package that adds a couple
3255 of additional macros to your testing toolbox. In particular, it focuses on
3256 functionality for testing values against reference files, which in turn the
3257 package can help create and update if need be.")
3258 (license license:expat)))
3260 (define-public julia-requires
3262 (name "julia-requires")
3268 (url "https://github.com/JuliaPackaging/Requires.jl/")
3269 (commit (string-append "v" version))))
3270 (file-name (git-file-name name version))
3272 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
3273 (build-system julia-build-system)
3274 (inputs ;required for test
3275 `(("julia-example" ,julia-example)))
3277 `(("julia-colors" ,julia-colors)))
3278 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
3279 (synopsis "Faster package loader")
3280 (description "This package make loading packages faster, maybe. It
3281 supports specifying glue code in packages which will load automatically when
3282 another package is loaded, so that explicit dependencies (and long load times)
3284 (license license:expat)))
3286 (define-public julia-reversediff
3288 (name "julia-reversediff")
3294 (url "https://github.com/JuliaDiff/ReverseDiff.jl")
3295 (commit (string-append "v" version))))
3296 (file-name (git-file-name name version))
3298 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl"))))
3299 (build-system julia-build-system)
3301 `(("julia-diffresults" ,julia-diffresults)
3302 ("julia-diffrules" ,julia-diffrules)
3303 ("julia-forwarddiff" ,julia-forwarddiff)
3304 ("julia-functionwrappers" ,julia-functionwrappers)
3305 ("julia-macrotools" ,julia-macrotools)
3306 ("julia-nanmath" ,julia-nanmath)
3307 ("julia-specialfunctions" ,julia-specialfunctions)
3308 ("julia-staticarrays" ,julia-staticarrays)))
3310 `(("julia-difftests" ,julia-difftests)
3311 ("julia-fillarrays" ,julia-fillarrays)))
3312 (home-page "https://github.com/JuliaDiff/ReverseDiff.jl")
3313 (synopsis "Reverse Mode Automatic Differentiation for Julia")
3314 (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based
3315 reverse mode @acronym{AD, automatic differentiation}, that implements methods to
3316 take gradients, Jacobians, Hessians, and higher-order derivatives of native
3317 Julia functions (or any callable object, really).")
3318 (license license:expat)))
3320 (define-public julia-richardson
3322 (name "julia-richardson")
3328 (url "https://github.com/JuliaMath/Richardson.jl")
3329 (commit (string-append "v" version))))
3330 (file-name (git-file-name name version))
3332 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
3333 (build-system julia-build-system)
3334 (home-page "https://juliapackages.com/p/richardson")
3335 (synopsis "Extrapolate function using Richardson method")
3336 (description "This package provides a function extrapolate that
3337 extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
3338 only at a geometric sequence of points @code{> x0} (or optionally @code{<
3339 x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
3340 tableau, which adaptively increases the degree of an extrapolation polynomial
3341 until convergence is achieved to a desired tolerance (or convergence stalls
3342 due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
3343 high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
3344 other power series in @code{h}.")
3345 (license license:expat)))
3347 (define-public julia-rotations
3348 ;; This is the first commit with support for julia-1.6.
3349 (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788")
3352 (name "julia-rotations")
3353 (version (git-version "1.0.2" revision commit))
3358 (url "https://github.com/JuliaGeometry/Rotations.jl")
3360 (file-name (git-file-name name version))
3362 (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19"))))
3363 (build-system julia-build-system)
3365 `(("julia-staticarrays" ,julia-staticarrays)))
3367 `(("julia-benchmarktools" ,julia-benchmarktools)
3368 ("julia-forwarddiff" ,julia-forwarddiff)
3369 ("julia-unitful" ,julia-unitful)))
3370 (home-page "https://github.com/JuliaGeometry/Rotations.jl")
3371 (synopsis "Julia implementations for different rotation parameterisations")
3372 (description "This package implements various 3D rotation parameterizations
3373 and defines conversions between them. At their heart, each rotation
3374 parameterization is a 3×3 unitary (orthogonal) matrix (based on the
3375 @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin
3376 through matrix-vector multiplication.")
3377 (license license:expat))))
3379 (define-public julia-safetestsets
3380 ;; The only release tag is the first commit in the repository.
3381 (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
3384 (name "julia-safetestsets")
3385 (version (git-version "0.0.1" revision commit))
3390 (url "https://github.com/YingboMa/SafeTestsets.jl")
3392 (file-name (git-file-name name version))
3394 (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
3395 (build-system julia-build-system)
3397 `(#:julia-package-name "SafeTestsets"))
3399 `(("julia-staticarrays" ,julia-staticarrays)))
3400 (home-page "https://github.com/YingboMa/SafeTestsets.jl")
3401 (synopsis "Julia's testset in a module")
3402 (description "This package contains the testset from Julia, packaged into
3403 a loadable module.")
3404 (license license:expat))))
3406 (define-public julia-scratch
3408 (name "julia-scratch")
3414 (url "https://github.com/JuliaPackaging/Scratch.jl")
3415 (commit (string-append "v" version))))
3416 (file-name (git-file-name name version))
3419 "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
3420 (build-system julia-build-system)
3422 `(#:tests? #f)) ; Test suite tries to access the Julia package registry.
3423 (home-page "https://github.com/JuliaPackaging/Scratch.jl")
3424 (synopsis "Scratch spaces for all your persistent mutable data needs")
3425 (description "This repository implements the scratch spaces API for
3426 package-specific mutable containers of data. These spaces can contain datasets,
3427 text, binaries, or any other kind of data that would be convenient to store in
3428 a location specific to your package. As compared to Artifacts, these containers
3429 of data are mutable. Because the scratch space location on disk is not very
3430 user-friendly, scratch spaces should, in general, not be used for a storing
3431 files that the user must interact with through a file browser.")
3432 (license license:expat)))
3434 (define-public julia-showoff
3436 (name "julia-showoff")
3442 (url "https://github.com/JuliaGraphics/Showoff.jl")
3443 (commit (string-append "v" version))))
3444 (file-name (git-file-name name version))
3446 (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53"))))
3447 (build-system julia-build-system)
3448 (home-page "https://github.com/JuliaGraphics/Showoff.jl")
3449 (synopsis "Nicely format an array of n things for tables and plots")
3450 (description "@code{Showoff} provides an interface for consistently
3451 formatting an array of n things, e.g. numbers, dates, unitful values. It's used
3452 in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.")
3453 (license license:expat)))
3455 (define-public julia-simpletraits
3457 (name "julia-simpletraits")
3463 (url "https://github.com/mauro3/SimpleTraits.jl")
3464 (commit (string-append "v" version))))
3465 (file-name (git-file-name name version))
3467 (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05"))))
3468 (build-system julia-build-system)
3470 `(("julia-macrotools" ,julia-macrotools)))
3471 (home-page "https://github.com/mauro3/SimpleTraits.jl")
3472 (synopsis "Simple Traits for Julia")
3473 (description "This package provides a macro-based implementation of traits.
3474 The main idea behind traits is to group types outside the type-hierarchy and to
3475 make dispatch work with that grouping. The difference to Union-types is that
3476 types can be added to a trait after the creation of the trait, whereas Union
3477 types are fixed after creation.")
3478 (license license:expat)))
3480 (define-public julia-sortingalgorithms
3482 (name "julia-sortingalgorithms")
3488 (url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3489 (commit (string-append "v" version))))
3490 (file-name (git-file-name name version))
3492 (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb"))))
3493 (build-system julia-build-system)
3495 `(#:tests? #f)) ; cycle with StatsBase.jl
3497 `(("julia-datastructures" ,julia-datastructures)))
3499 ; `(("julia-statsbase" ,julia-statsbase)))
3500 (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3501 (synopsis "Extra sorting algorithms extending Julia's sorting API")
3502 (description "The SortingAlgorithms package provides three sorting
3503 algorithms that can be used with Julia's standard sorting API: heapsort,
3504 timsort and radixsort.")
3505 (license license:expat)))
3507 (define-public julia-specialfunctions
3509 (name "julia-specialfunctions")
3515 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
3516 (commit (string-append "v" version))))
3517 (file-name (git-file-name name version))
3519 (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0"))))
3520 (build-system julia-build-system)
3522 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
3524 `(("julia-chainrulescore" ,julia-chainrulescore)
3525 ("julia-logexpfunctions" ,julia-logexpfunctions)
3526 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
3527 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
3528 (synopsis "Special mathematical functions")
3529 (description "This package provides special mathematical functions,
3530 including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
3531 cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
3532 polygamma functions.")
3533 (license license:expat)))
3535 (define-public julia-splitapplycombine
3537 (name "julia-splitapplycombine")
3543 (url "https://github.com/JuliaData/SplitApplyCombine.jl")
3544 (commit (string-append "v" version))))
3545 (file-name (git-file-name name version))
3547 (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x"))))
3548 (build-system julia-build-system)
3550 `(("julia-dictionaries" ,julia-dictionaries)
3551 ("julia-indexing" ,julia-indexing)))
3552 (home-page "https://github.com/JuliaData/SplitApplyCombine.jl")
3553 (synopsis "Split-apply-combine strategies for Julia")
3554 (description "@code{SplitApplyCombine.jl} provides high-level, generic tools
3555 for manipulating data - particularly focussing on data in nested containers. An
3556 emphasis is placed on ensuring split-apply-combine strategies are easy to apply,
3557 and work reliably for arbitrary iterables and in an optimized way with the data
3558 structures included in Julia's standard library.")
3559 (license license:expat)))
3561 (define-public julia-stablerngs
3563 (name "julia-stablerngs")
3569 (url "https://github.com/JuliaRandom/StableRNGs.jl")
3570 (commit (string-append "v" version))))
3571 (file-name (git-file-name name version))
3573 (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
3574 (build-system julia-build-system)
3575 (home-page "https://github.com/JuliaRandom/StableRNGs.jl")
3576 (synopsis "Julia RNG with stable streams")
3577 (description "This package intends to provide a simple RNG with stable
3578 streams, suitable for tests in packages which need reproducible streams of
3579 random numbers across Julia versions. Indeed, the Julia RNGs provided by
3580 default are documented to have non-stable streams (which for example enables
3581 some performance improvements).")
3582 (license license:expat)))
3584 (define-public julia-stackviews
3586 (name "julia-stackviews")
3592 (url "https://github.com/JuliaArrays/StackViews.jl")
3593 (commit (string-append "v" version))))
3594 (file-name (git-file-name name version))
3596 (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
3597 (build-system julia-build-system)
3599 `(#:tests? #f ; Documenter.jl not packaged yet
3601 (modify-phases %standard-phases
3602 (add-after 'unpack 'skip-doctest
3604 (substitute* "test/runtests.jl"
3605 ((".*doctest.*") ""))
3608 `(("julia-offsetarrays" ,julia-offsetarrays)))
3610 ; `(("julia-aqua" ,julia-aqua)
3611 ; ("julia-documenter" ,julia-documenter)))
3612 (home-page "https://github.com/JuliaArrays/StackViews.jl")
3613 (synopsis "No more catcat")
3614 (description "StackViews provides only one array type: @code{StackView}.
3615 There are multiple ways to understand @code{StackView}:
3617 @item inverse of @code{eachslice}
3618 @item @code{cat} variant
3620 @item lazy version of @code{repeat} special case
3622 (license license:expat)))
3624 (define-public julia-static
3626 (name "julia-static")
3632 (url "https://github.com/SciML/Static.jl")
3633 (commit (string-append "v" version))))
3634 (file-name (git-file-name name version))
3636 (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2"))))
3637 (build-system julia-build-system)
3639 `(("julia-ifelse" ,julia-ifelse)))
3641 `(("julia-aqua" ,julia-aqua)))
3642 (home-page "https://github.com/SciML/Static.jl")
3643 (synopsis "Static types useful for dispatch and generated functions")
3644 (description "Static.jl defines a limited set of statically parameterized
3645 types and a common interface that is shared between them.")
3646 (license license:expat)))
3648 (define-public julia-staticarrays
3650 (name "julia-staticarrays")
3656 (url "https://github.com/JuliaArrays/StaticArrays.jl")
3657 (commit (string-append "v" version))))
3658 (file-name (git-file-name name version))
3660 (base32 "1902bl9p96mfq7d1rbilwp98wz2g82ml9svcgx7sczglyjbs4nsk"))))
3661 (build-system julia-build-system)
3663 `(("julia-benchmarktools" ,julia-benchmarktools)))
3664 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
3665 (synopsis "Statically sized arrays")
3666 (description "This package provides a framework for implementing
3667 statically sized arrays in Julia, using the abstract type
3668 @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
3669 @code{StaticArray} will provide fast implementations of common array and
3670 linear algebra operations.")
3671 (license license:expat)))
3673 (define-public julia-statsapi
3675 (name "julia-statsapi")
3681 (url "https://github.com/JuliaStats/StatsAPI.jl")
3682 (commit (string-append "v" version))))
3683 (file-name (git-file-name name version))
3685 (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv"))))
3686 (build-system julia-build-system)
3687 (home-page "https://juliastats.org/")
3688 (synopsis "Statistics-focused namespace for packages to share functions")
3689 (description "This package provides a namespace for data-related generic
3690 function definitions to solve the optional dependency problem; packages wishing
3691 to share and/or extend functions can avoid depending directly on each other by
3692 moving the function definition to @code{StatsAPI.jl} and each package taking a
3694 (license license:expat)))
3696 (define-public julia-statsbase
3698 (name "julia-statsbase")
3704 (url "https://github.com/JuliaStats/StatsBase.jl")
3705 (commit (string-append "v" version))))
3706 (file-name (git-file-name name version))
3708 (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi"))))
3709 (build-system julia-build-system)
3711 `(("julia-dataapi" ,julia-dataapi)
3712 ("julia-datastructures" ,julia-datastructures)
3713 ("julia-missings" ,julia-missings)
3714 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
3715 ("julia-statsapi" ,julia-statsapi)))
3717 `(("julia-stablerngs" ,julia-stablerngs)))
3718 (home-page "https://github.com/JuliaStats/StatsBase.jl")
3719 (synopsis "Basic statistics for Julia")
3720 (description "StatsBase.jl is a Julia package that provides basic support
3721 for statistics. Particularly, it implements a variety of statistics-related
3722 functions, such as scalar statistics, high-order moment computation, counting,
3723 ranking, covariances, sampling, and empirical density estimation.")
3724 (license license:expat)))
3726 (define-public julia-stringdistances
3728 (name "julia-stringdistances")
3734 (url "https://github.com/matthieugomez/StringDistances.jl")
3735 (commit (string-append "v" version))))
3736 (file-name (git-file-name name version))
3738 (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7"))))
3739 (build-system julia-build-system)
3741 `(("julia-distances" ,julia-distances)))
3742 (home-page "https://github.com/matthieugomez/StringDistances.jl")
3743 (synopsis "String Distances in Julia")
3744 (description "This package provides string distances in Julia. Distances
3745 are defined for @code{AbstractStrings}, and any iterator that define
3746 @code{length()}. The package also defines Distance \"modifiers\" that can be
3747 applied to any distance.")
3748 (license license:expat)))
3750 (define-public julia-structtypes
3752 (name "julia-structtypes")
3758 (url "https://github.com/JuliaData/StructTypes.jl")
3759 (commit (string-append "v" version))))
3760 (file-name (git-file-name name version))
3762 (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
3763 (build-system julia-build-system)
3764 (home-page "https://juliadata.github.io/StructTypes.jl/stable/")
3765 (synopsis "Abstract definitions and convenience methods for Julia objects")
3766 (description "This package provides the @code{StructTypes.StructType} trait
3767 for Julia types to declare the kind of \"struct\" they are, providing
3768 serialization/deserialization packages patterns and strategies to automatically
3769 construct objects.")
3770 (license license:expat)))
3772 (define-public julia-suppressor
3774 (name "julia-suppressor")
3780 (url "https://github.com/JuliaIO/Suppressor.jl")
3781 (commit (string-append "v" version))))
3782 (file-name (git-file-name name version))
3784 (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
3785 (build-system julia-build-system)
3786 (home-page "https://github.com/JuliaIO/Suppressor.jl")
3787 (synopsis "Capture stdout and sterr")
3788 (description "Julia macros for suppressing and/or capturing output (stdout),
3789 warnings (stderr) or both streams at the same time.")
3790 (license license:expat)))
3792 (define-public julia-tableiointerface
3794 (name "julia-tableiointerface")
3800 (url "https://github.com/lungben/TableIOInterface.jl")
3801 (commit (string-append "v" version))))
3802 (file-name (git-file-name name version))
3804 (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"))))
3805 (build-system julia-build-system)
3806 (home-page "https://github.com/lungben/TableIOInterface.jl")
3807 (synopsis "File formats based on file extensions")
3808 (description "This package determines tabular file formats based on file
3809 extensions. It is intended to be the base both for @code{TableIO.jl} and for
3810 the @code{Pluto.jl} tabular data import functionality.")
3811 (license license:expat)))
3813 (define-public julia-tables
3815 (name "julia-tables")
3821 (url "https://github.com/JuliaData/Tables.jl")
3822 (commit (string-append "v" version))))
3823 (file-name (git-file-name name version))
3825 (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb"))))
3826 (build-system julia-build-system)
3828 `(("julia-dataapi" ,julia-dataapi)
3829 ("julia-datavalueinterfaces" ,julia-datavalueinterfaces)
3830 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3831 ("julia-tabletraits" ,julia-tabletraits)))
3833 `(("julia-datavalues" ,julia-datavalues)
3834 ("julia-queryoperators" ,julia-queryoperators)))
3835 (home-page "https://github.com/JuliaData/Tables.jl")
3836 (synopsis "Interface for tables in Julia")
3837 (description "The @code{Tables.jl} package provides simple, yet powerful
3838 interface functions for working with all kinds tabular data.")
3839 (license license:expat)))
3841 (define-public julia-tableshowutils
3842 ;; The 0.2.5 release is not fully compatable with newer versions of Julia.
3843 (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460")
3846 (name "julia-tableshowutils")
3852 (url "https://github.com/queryverse/TableShowUtils.jl")
3854 (file-name (git-file-name name version))
3856 (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5"))))
3857 (build-system julia-build-system)
3859 `(("julia-datavalues" ,julia-datavalues)
3860 ("julia-json" ,julia-json)))
3861 (home-page "https://github.com/queryverse/TableShowUtils.jl")
3862 (synopsis "Implement show for TableTraits.jl types")
3863 (description "This package provides some common helper functions that make
3864 it easier to implement various @code{Base.show} functions for types that
3865 participate in the @code{TableTraits.jl} ecosystem.")
3866 (license license:expat))))
3868 (define-public julia-tabletraits
3870 (name "julia-tabletraits")
3876 (url "https://github.com/queryverse/TableTraits.jl")
3877 (commit (string-append "v" version))))
3878 (file-name (git-file-name name version))
3880 (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"))))
3881 (build-system julia-build-system)
3883 `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)))
3884 (home-page "https://github.com/queryverse/TableTraits.jl")
3885 (synopsis "Traits for Julia tables")
3886 (description "TableTraits defines a generic interface for tabular data.")
3887 (license license:expat)))
3889 (define-public julia-tensorcore
3891 (name "julia-tensorcore")
3897 (url "https://github.com/JuliaMath/TensorCore.jl")
3898 (commit (string-append "v" version))))
3899 (file-name (git-file-name name version))
3901 (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy"))))
3902 (build-system julia-build-system)
3903 (home-page "https://github.com/JuliaMath/TensorCore.jl")
3904 (synopsis "Tensor-algebra definitions")
3905 (description "This package is intended as a lightweight foundation for
3906 tensor operations across the Julia ecosystem. Currently it exports three
3907 operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor,
3908 product preserves all dimensions}, and @acronym{boxdot, contracts neighboring
3910 (license license:expat)))
3912 (define-public julia-testimages
3914 (name "julia-testimages")
3920 (url "https://github.com/JuliaImages/TestImages.jl")
3921 (commit (string-append "v" version))))
3922 (file-name (git-file-name name version))
3924 (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
3925 (build-system julia-build-system)
3927 `(#:tests? #f)) ; cycle with ImageMagick.jl
3929 `(("julia-axisarrays" ,julia-axisarrays)
3930 ("julia-colortypes" ,julia-colortypes)
3931 ("julia-fileio" ,julia-fileio)
3932 ("julia-offsetarrays" ,julia-offsetarrays)
3933 ("julia-stringdistances" ,julia-stringdistances)))
3935 ; `(("julia-colors" ,julia-colors)
3936 ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
3937 ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment)
3938 ; ("julia-imagemagick" ,julia-imagemagick)
3939 ; ("julia-ometiff" ,julia-ometiff)
3940 ; ("julia-referencetests" ,julia-referencetests)))
3941 (home-page "https://testimages.juliaimages.org/")
3942 (synopsis "Standard test images for Julia")
3943 (description "This package provides a convenient Julia interface for loading
3944 standard named test images and example images for the internal usage in
3945 @code{JuliaImages}. This can be used in conjunction with the @code{Images}
3947 (license license:expat)))
3949 (define-public julia-tracker
3951 (name "julia-tracker")
3957 (url "https://github.com/FluxML/Tracker.jl")
3958 (commit (string-append "v" version))))
3959 (file-name (git-file-name name version))
3961 (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j"))
3962 (patches (search-patches "julia-tracker-16-compat.patch"))))
3963 (build-system julia-build-system)
3965 `(("julia-adapt" ,julia-adapt)
3966 ("julia-diffrules" ,julia-diffrules)
3967 ("julia-forwarddiff" ,julia-forwarddiff)
3968 ("julia-macrotools" ,julia-macrotools)
3969 ("julia-nanmath" ,julia-nanmath)
3970 ("julia-nnlib" ,julia-nnlib)
3971 ("julia-requires" ,julia-requires)
3972 ("julia-specialfunctions" ,julia-specialfunctions)))
3974 `(("julia-pdmats" ,julia-pdmats)))
3975 (home-page "https://github.com/FluxML/Tracker.jl")
3976 (synopsis "Operator overloading reverse-mode automatic differentiator")
3977 (description "@code{Tracker.jl} previously provided @code{Flux.jl} with
3978 automatic differentiation for its machine learning platform.")
3979 (license license:expat)))
3981 (define-public julia-typedtables
3983 (name "julia-typedtables")
3989 (url "https://github.com/JuliaData/TypedTables.jl")
3990 (commit (string-append "v" version))))
3991 (file-name (git-file-name name version))
3993 (base32 "06k5h7ybsh29b6kiy0p62rp9b2q3xi9jk8p9wf0kq907p5kvfnfy"))))
3994 (build-system julia-build-system)
3996 `(("julia-adapt" ,julia-adapt)
3997 ("julia-splitapplycombine" ,julia-splitapplycombine)
3998 ("julia-tables" ,julia-tables)))
3999 (home-page "https://github.com/JuliaData/TypedTables.jl")
4000 (synopsis "Column-based storage for data analysis in Julia")
4001 (description "@code{TypedTables.jl} provides two column-based storage
4002 containers: @code{Table} and @code{FlexTable}, both of which represent an array
4003 of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use
4004 and fast, and presents a very minimal new interface to learn.")
4005 (license license:expat)))
4007 (define-public julia-unpack
4009 (name "julia-unpack")
4015 (url "https://github.com/mauro3/UnPack.jl")
4016 (commit (string-append "v" version))))
4017 (file-name (git-file-name name version))
4019 (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
4020 (build-system julia-build-system)
4021 (home-page "https://github.com/mauro3/UnPack.jl")
4022 (synopsis "Pack and Unpack macros for Julia")
4023 (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
4024 types, modules, and dictionaries.")
4025 (license license:expat)))
4027 (define-public julia-uris
4035 (url "https://github.com/JuliaWeb/URIs.jl")
4036 (commit (string-append "v" version))))
4037 (file-name (git-file-name name version))
4039 (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
4040 (build-system julia-build-system)
4042 '(#:julia-package-name "URIs" ;required to run tests
4044 (modify-phases %standard-phases
4045 (add-before 'check 'change-dir
4046 ;; Tests must be run from the testdir
4047 (lambda* (#:key source outputs #:allow-other-keys)
4048 (let ((out (assoc-ref outputs "out")))
4050 (string-append out "/share/julia/packages/URIs/test")))
4052 ;; required for tests
4053 (inputs `(("julia-json" ,julia-json)))
4054 (home-page "https://github.com/JuliaWeb/URIs.jl")
4055 (synopsis "URI parsing in Julia")
4056 (description "@code{URIs.jl} is a Julia package that allows parsing and
4057 working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
4059 (license license:expat)))
4061 (define-public julia-unitful
4063 (name "julia-unitful")
4069 (url "https://github.com/PainterQubits/Unitful.jl")
4070 (commit (string-append "v" version))))
4071 (file-name (git-file-name name version))
4073 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
4074 (build-system julia-build-system)
4076 `(("julia-constructionbase" ,julia-constructionbase)))
4077 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
4078 (synopsis "Physical units in Julia")
4079 (description "This package supports SI units and also many other unit
4081 (license license:expat)))
4083 (define-public julia-versionparsing
4085 (name "julia-versionparsing")
4091 (url "https://github.com/JuliaInterop/VersionParsing.jl")
4092 (commit (string-append "v" version))))
4093 (file-name (git-file-name name version))
4095 (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva"))))
4096 (build-system julia-build-system)
4097 (home-page "https://github.com/JuliaInterop/VersionParsing.jl")
4098 (synopsis "Flexible VersionNumber parsing in Julia")
4099 (description "The @code{VersionParsing} package implements flexible parsing
4100 of version-number strings into Julia's built-in @code{VersionNumber} type, via
4101 the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)}
4102 constructor, @code{vparse(string)} can handle version-number strings in a much
4103 wider range of formats than are encompassed by the semver standard. This is
4104 useful in order to support @code{VersionNumber} comparisons applied to
4105 \"foreign\" version numbers from external packages.")
4106 (license license:expat)))
4108 (define-public julia-weakrefstrings
4110 (name "julia-weakrefstrings")
4116 (url "https://github.com/JuliaData/WeakRefStrings.jl")
4117 (commit (string-append "v" version))))
4118 (file-name (git-file-name name version))
4120 (base32 "1p8q62zsmi02vyckgy25ddmxns223xrhx575x9lfgvr7jrw1kl2p"))))
4121 (build-system julia-build-system)
4123 `(("julia-dataapi" ,julia-dataapi)
4124 ("julia-parsers" ,julia-parsers)))
4125 (home-page "https://github.com/JuliaData/WeakRefStrings.jl")
4126 (synopsis "Efficient string representation and transfer in Julia")
4127 (description "This package provides a minimal String type for Julia that
4128 allows for efficient string representation and transfer")
4129 (license license:expat)))
4131 (define-public julia-woodburymatrices
4133 (name "julia-woodburymatrices")
4139 (url "https://github.com/timholy/WoodburyMatrices.jl")
4140 (commit (string-append "v" version))))
4141 (file-name (git-file-name name version))
4143 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
4144 (build-system julia-build-system)
4145 (home-page "https://github.com/timholy/WoodburyMatrices.jl")
4146 (synopsis "Support for the Woodbury matrix identity for Julia")
4147 (description "This package provides support for the Woodbury matrix identity
4148 for the Julia programming language. This is a generalization of the
4149 Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious
4150 for floating-point roundoff errors, so be prepared for a certain amount of
4151 inaccuracy in the result.")
4152 (license license:expat)))
4154 (define-public julia-zipfile
4156 (name "julia-zipfile")
4162 (url "https://github.com/fhs/ZipFile.jl")
4163 (commit (string-append "v" version))))
4164 (file-name (git-file-name name version))
4167 "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
4168 (build-system julia-build-system)
4170 `(("julia-zlib-jll" ,julia-zlib-jll)))
4171 (home-page "https://github.com/fhs/ZipFile.jl")
4172 (synopsis "Read/Write ZIP archives in Julia")
4173 (description "This module provides support for reading and writing ZIP
4174 archives in Julia.")
4175 (license license:expat)))
4177 (define-public julia-zygoterules
4179 (name "julia-zygoterules")
4185 (url "https://github.com/FluxML/ZygoteRules.jl")
4186 (commit (string-append "v" version))))
4187 (file-name (git-file-name name version))
4189 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
4190 (build-system julia-build-system)
4192 `(("julia-macrotools" ,julia-macrotools)))
4193 (home-page "https://github.com/FluxML/ZygoteRules.jl")
4194 (synopsis "Add minimal custom gradients to Zygote")
4195 (description "Minimal package which enables to add custom gradients to
4196 Zygote, without depending on Zygote itself.")
4197 (license license:expat)))
4199 (define-public julia-zygote
4201 (name "julia-zygote")
4207 (url "https://github.com/FluxML/Zygote.jl")
4208 (commit (string-append "v" version))))
4209 (file-name (git-file-name name version))
4211 (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
4212 (build-system julia-build-system)
4214 `(#:tests? #f)) ;require CUDA, not packaged yet
4216 `(("julia-abstractffs" ,julia-abstractffts)
4217 ("julia-chainrules" ,julia-chainrules)
4218 ("julia-diffrules" ,julia-diffrules)
4219 ("julia-fillarrays" ,julia-fillarrays)
4220 ("julia-forwarddiff" ,julia-forwarddiff)
4221 ("julia-irtools" ,julia-irtools)
4222 ("julia-macrotools" ,julia-macrotools)
4223 ("julia-nanmath" ,julia-nanmath)
4224 ("julia-requires" ,julia-requires)
4225 ("julia-specialfunctions" ,julia-specialfunctions)
4226 ("julia-zygote-rules" ,julia-zygoterules)))
4227 (home-page "https://fluxml.ai/Zygote.jl")
4228 (synopsis "Automatic differentiation in Julia")
4229 (description "Zygote provides source-to-source automatic
4230 differentiation (AD) in Julia, and is the next-generation AD system for the
4231 Flux differentiable programming framework.")
4232 (license license:expat)))