1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
3 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
4 ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
5 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
6 ;;; Copyright © 2021 jgart <jgart@dismail.de>
8 ;;; This file is part of GNU Guix.
10 ;;; GNU Guix is free software; you can redistribute it and/or modify it
11 ;;; under the terms of the GNU General Public License as published by
12 ;;; the Free Software Foundation; either version 3 of the License, or (at
13 ;;; your option) any later version.
15 ;;; GNU Guix is distributed in the hope that it will be useful, but
16 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
17 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
18 ;;; GNU General Public License for more details.
20 ;;; You should have received a copy of the GNU General Public License
21 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
23 (define-module (gnu packages julia-xyz)
24 #:use-module ((guix licenses) #:prefix license:)
25 #:use-module (gnu packages)
26 #:use-module (guix utils)
27 #:use-module (guix packages)
28 #:use-module (guix git-download)
29 #:use-module (guix build-system julia)
30 #:use-module (gnu packages gcc)
31 #:use-module (gnu packages julia-jll)
32 #:use-module (gnu packages python)
33 #:use-module (gnu packages python-xyz)
34 #:use-module (gnu packages version-control))
36 (define-public julia-abstractffts
38 (name "julia-abstractffts")
44 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
45 (commit (string-append "v" version))))
46 (file-name (git-file-name name version))
48 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
49 (build-system julia-build-system)
50 (inputs ;required for tests
51 `(("julia-unitful" ,julia-unitful)))
52 (home-page "https://github.com/JuliaGPU/Adapt.jl")
53 (synopsis "General framework for fast Fourier transforms (FFTs)")
54 (description "This package allows multiple FFT packages to co-exist with
55 the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
56 mainly not intended to be used directly. Instead, developers of packages that
57 implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
58 types/functions defined in AbstractFFTs.")
59 (license license:expat)))
61 (define-public julia-abstracttrees
63 (name "julia-abstracttrees")
69 (url "https://github.com/JuliaCollections/AbstractTrees.jl")
70 (commit (string-append "v" version))))
71 (file-name (git-file-name name version))
73 (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
74 (build-system julia-build-system)
75 (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
76 (synopsis "Abstract Julia interfaces for working with trees")
77 (description "This Julia package provides several utilities for working
78 with tree-like data structures. Most importantly, it defines the
79 @code{children} method that any package that contains such a data structure
80 may import and extend in order to take advantage of any generic tree algorithm
82 (license license:expat)))
84 (define-public julia-adapt
92 (url "https://github.com/JuliaGPU/Adapt.jl")
93 (commit (string-append "v" version))))
94 (file-name (git-file-name name version))
96 (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7"))))
97 (build-system julia-build-system)
98 (home-page "https://github.com/JuliaGPU/Adapt.jl")
99 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
100 (description "This Julia package provides the @code{adapt(T, x)} function
101 acts like @code{convert(T, x)}, but without the restriction of returning a
102 @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
103 be GPU compatible without throwing away the wrapper.")
104 (license license:expat)))
106 (define-public julia-ansicoloredprinters
108 (name "julia-ansicoloredprinters")
114 (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
115 (commit (string-append "v" version))))
116 (file-name (git-file-name name version))
118 (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
119 (build-system julia-build-system)
120 (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
121 (synopsis "ANSI escape code translator")
122 (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
123 ANSI escape codes to another format.")
124 (license license:expat)))
126 (define-public julia-aqua
134 (url "https://github.com/JuliaTesting/Aqua.jl")
135 (commit (string-append "v" version))))
136 (file-name (git-file-name name version))
138 (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk"))))
139 (build-system julia-build-system)
140 (home-page "https://github.com/JuliaTesting/Aqua.jl")
141 (synopsis "Automated quality assurance for Julia packages")
142 (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
143 provides functions to run a few automatable checks for Julia packages.")
144 (license license:expat)))
146 (define-public julia-arrayinterface
148 (name "julia-arrayinterface")
154 (url "https://github.com/JuliaArrays/ArrayInterface.jl")
155 (commit (string-append "v" version))))
156 (file-name (git-file-name name version))
158 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33"))))
159 (build-system julia-build-system)
161 `(("julia-ifelse" ,julia-ifelse)
162 ("julia-requires" ,julia-requires)
163 ("julia-static" ,julia-static)))
165 `(("julia-aqua" ,julia-aqua)
166 ("julia-bandedmatrices" ,julia-bandedmatrices)
167 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
168 ("julia-ifelse" ,julia-ifelse)
169 ("julia-offsetarrays" ,julia-offsetarrays)
170 ("julia-staticarrays" ,julia-staticarrays)))
171 (home-page "https://github.com/JuliaArrays/ArrayInterface.jl")
172 (synopsis "Base array interface primitives")
173 (description "The purpose of this library is to solidify extensions to the
174 current @code{AbstractArray} interface, which are put to use in package
175 ecosystems like @code{DifferentialEquations.jl}. Since these libraries are
176 live, this package will serve as a staging ground for ideas before they are
177 merged into Base Julia. For this reason, no functionality is exported so that
178 if such functions are added and exported in a future Base Julia, there will be
179 no issues with the upgrade.")
180 (license license:expat)))
182 (define-public julia-arraylayouts
184 (name "julia-arraylayouts")
190 (url "https://github.com/JuliaMatrices/ArrayLayouts.jl")
191 (commit (string-append "v" version))))
192 (file-name (git-file-name name version))
194 (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg"))))
195 (build-system julia-build-system)
197 `(("julia-fillarrays" ,julia-fillarrays)))
198 (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl")
199 (synopsis "Array layouts and general fast linear algebra")
200 (description "This package implements a trait-based framework for describing
201 array layouts such as column major, row major, etc. that can be dispatched to
202 appropriate BLAS or optimised Julia linear algebra routines. This supports a
203 much wider class of matrix types than Julia's in-built @code{StridedArray}.")
204 (license license:expat)))
206 (define-public julia-axisalgorithms
208 (name "julia-axisalgorithms")
214 (url "https://github.com/timholy/AxisAlgorithms.jl")
215 (commit (string-append "v" version))))
216 (file-name (git-file-name name version))
218 (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk"))))
219 (build-system julia-build-system)
221 `(("julia-woodburymatrices" ,julia-woodburymatrices)))
222 (home-page "https://github.com/timholy/AxisAlgorithms.jl")
223 (synopsis "Filtering and linear algebra routines for multidimensional arrays")
224 (description "@code{AxisAlgorithms} is a collection of filtering and linear
225 algebra algorithms for multidimensional arrays. For algorithms that would
226 typically apply along the columns of a matrix, you can instead pick an arbitrary
228 (license license:expat)))
230 (define-public julia-axisarrays
232 (name "julia-axisarrays")
238 (url "https://github.com/JuliaArrays/AxisArrays.jl")
239 (commit (string-append "v" version))))
240 (file-name (git-file-name name version))
242 (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk"))))
243 (build-system julia-build-system)
245 `(("julia-rangearrays" ,julia-rangearrays)
246 ("julia-intervalsets" ,julia-intervalsets)
247 ("julia-itertools" ,julia-itertools)))
249 `(("julia-offsetarrays" ,julia-offsetarrays)
250 ("julia-unitful" ,julia-unitful)))
251 (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/")
252 (synopsis "Arrays where each dimension can have a named axis with values")
253 (description "This package for the Julia language provides an array type
254 (the AxisArray) that knows about its dimension names and axis values. This
255 allows for indexing by name without incurring any runtime overhead. This
256 permits one to implement algorithms that are oblivious to the storage order of
257 the underlying arrays. AxisArrays can also be indexed by the values along their
258 axes, allowing column names or interval selections.")
259 (license license:expat)))
261 (define-public julia-bandedmatrices
263 (name "julia-bandedmatrices")
269 (url "https://github.com/JuliaMatrices/BandedMatrices.jl")
270 (commit (string-append "v" version))))
271 (file-name (git-file-name name version))
273 (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism"))))
274 (build-system julia-build-system)
276 `(("julia-arraylayouts" ,julia-arraylayouts)
277 ("julia-fillarrays" ,julia-fillarrays)))
279 `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra)))
280 (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl")
281 (synopsis "Julia package for representing banded matrices")
282 (description "This package supports representing banded matrices by only
283 the entries on the bands.")
284 (license license:expat)))
286 (define-public julia-benchmarktools
288 (name "julia-benchmarktools")
294 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
295 (commit (string-append "v" version))))
296 (file-name (git-file-name name version))
298 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
299 (build-system julia-build-system)
300 (propagated-inputs `(("julia-json" ,julia-json)))
301 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
302 (synopsis "Benchmarking framework for the Julia language")
303 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
304 code easy by supplying a framework for writing and running groups of
305 benchmarks as well as comparing benchmark results.")
306 (license license:expat)))
308 (define-public julia-blockarrays
310 (name "julia-blockarrays")
316 (url "https://github.com/JuliaArrays/BlockArrays.jl")
317 (commit (string-append "v" version))))
318 (file-name (git-file-name name version))
320 (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1"))))
321 (build-system julia-build-system)
323 `(("julia-arraylayouts" ,julia-arraylayouts)
324 ("julia-fillarrays" ,julia-fillarrays)))
326 `(("julia-lazyarrays" ,julia-lazyarrays)
327 ("julia-offsetarrays" ,julia-offsetarrays)
328 ("julia-staticarrays" ,julia-staticarrays)))
329 (home-page "https://github.com/JuliaArrays/BlockArrays.jl")
330 (synopsis "BlockArrays for Julia")
331 (description "A block array is a partition of an array into blocks or
332 subarrays. This package has two purposes. Firstly, it defines an interface for
333 an @code{AbstractBlockArray} block arrays that can be shared among types
334 representing different types of block arrays. The advantage to this is that it
335 provides a consistent API for block arrays.
336 Secondly, it also implements two different type of block arrays that follow the
337 @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each
338 block contiguously while the type @code{PseudoBlockArray} stores the full matrix
339 contiguously. This means that @code{BlockArray} supports fast non copying
340 extraction and insertion of blocks while @code{PseudoBlockArray} supports fast
341 access to the full matrix to use in in for example a linear solver.")
342 (license license:expat)))
344 (define-public julia-blockbandedmatrices
346 (name "julia-blockbandedmatrices")
352 (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
353 (commit (string-append "v" version))))
354 (file-name (git-file-name name version))
356 (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9"))))
357 (build-system julia-build-system)
359 `(("julia-arraylayouts" ,julia-arraylayouts)
360 ("julia-bandedmatrices" ,julia-bandedmatrices)
361 ("julia-blockarrays" ,julia-blockarrays)
362 ("julia-fillarrays" ,julia-fillarrays)
363 ("julia-matrixfactorizations" ,julia-matrixfactorizations)))
364 (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
365 (synopsis "Block-banded matrices and banded-block-banded matrices")
366 (description "This package supports representing block-banded and
367 banded-block-banded matrices by only storing the entries in the non-zero bands.
368 A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
369 @code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
370 (license license:expat)))
372 (define-public julia-bson
380 (url "https://github.com/JuliaIO/BSON.jl")
381 (commit (string-append "v" version))))
382 (file-name (git-file-name name version))
384 (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn"))))
385 (build-system julia-build-system)
387 `(("julia-dataframes" ,julia-dataframes)))
388 (home-page "https://github.com/JuliaIO/BSON.jl")
389 (synopsis "Binary JSON serialisation format")
390 (description "@code{BSON.jl} is a Julia package for working with the Binary
391 JSON serialisation format. It can be used as a general store for Julia data
393 (license license:expat)))
395 (define-public julia-bufferedstreams
397 (name "julia-bufferedstreams")
403 (url "https://github.com/BioJulia/BufferedStreams.jl")
404 (commit (string-append "v" version))))
405 (file-name (git-file-name name version))
407 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
408 (build-system julia-build-system)
409 ;; The package is old and tests are using undefined functions. They also
411 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
414 #:julia-package-name "BufferedStreams"
415 #:julia-package-uuid "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"))
416 (propagated-inputs `(("julia-compat" ,julia-compat)))
417 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
418 (synopsis "Fast composable IO streams")
419 (description "@code{BufferedStreams.jl} provides buffering for IO
420 operations. It can wrap any @code{IO} type automatically making incremental
421 reading and writing faster.")
422 (license license:expat)))
424 (define-public julia-calculus
426 (name "julia-calculus")
432 (url "https://github.com/JuliaMath/Calculus.jl")
433 (commit (string-append "v" version))))
434 (file-name (git-file-name name version))
436 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
437 (build-system julia-build-system)
438 (home-page "https://github.com/JuliaMath/Calculus.jl")
439 (synopsis "Common utilities for automatic differentiation")
440 (description "This package provides tools for working with the basic
441 calculus operations of differentiation and integration. The @code{Calculus}
442 package produces approximate derivatives by several forms of finite
443 differencing or produces exact derivative using symbolic differentiation. It
444 can also be used to compute definite integrals by different numerical
446 (license license:expat)))
448 (define-public julia-categoricalarrays
450 (name "julia-categoricalarrays")
456 (url "https://github.com/JuliaData/CategoricalArrays.jl")
457 (commit (string-append "v" version))))
458 (file-name (git-file-name name version))
460 (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x"))))
461 (build-system julia-build-system)
463 `(("julia-pooledarrays" ,julia-pooledarrays)))
465 `(("julia-dataapi" ,julia-dataapi)
466 ("julia-json" ,julia-json)
467 ("julia-json3" ,julia-json3)
468 ("julia-missings" ,julia-missings)
469 ("julia-recipesbase" ,julia-recipesbase)
470 ("julia-structtypes" ,julia-structtypes)))
471 (home-page "https://github.com/JuliaData/CategoricalArrays.jl")
472 (synopsis "Arrays for working with categorical data")
473 (description "This package provides tools for working with categorical
474 variables, both with unordered (nominal variables) and ordered categories
475 (ordinal variables), optionally with missing values.")
476 (license license:expat)))
478 (define-public julia-chainrules
480 (name "julia-chainrules")
486 (url "https://github.com/JuliaDiff/ChainRules.jl")
487 (commit (string-append "v" version))))
488 (file-name (git-file-name name version))
490 (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70"))))
491 (build-system julia-build-system)
492 (inputs ;required for test
493 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
494 ("julia-finitedifferences" ,julia-finitedifferences)
495 ("julia-nanmath" ,julia-nanmath)
496 ("julia-specialfunctions" ,julia-specialfunctions)))
498 `(("julia-chainrulescore" ,julia-chainrulescore)
499 ("julia-compat" ,julia-compat)
500 ("julia-reexport" ,julia-reexport)
501 ("julia-requires" ,julia-requires)))
502 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
503 (synopsis "Common utilities for automatic differentiation")
504 (description "The is package provides a variety of common utilities that
505 can be used by downstream automatic differentiation (AD) tools to define and
506 execute forward-, reverse-, and mixed-mode primitives.")
507 (license license:expat)))
509 (define-public julia-chainrulescore
511 (name "julia-chainrulescore")
517 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
518 (commit (string-append "v" version))))
519 (file-name (git-file-name name version))
521 (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb"))))
522 (build-system julia-build-system)
523 (inputs ;required for tests
524 `(("julia-benchmarktools" ,julia-benchmarktools)
525 ("julia-staticarrays" ,julia-staticarrays)))
527 `(("julia-compat" ,julia-compat)))
528 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
529 (synopsis "Common utilities used by downstream automatic differentiation tools")
530 (description "The package provides a light-weight dependency for defining
531 sensitivities for functions without the need to depend on ChainRules itself.")
532 (license license:expat)))
534 (define-public julia-chainrulestestutils
536 (name "julia-chainrulestestutils")
542 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
543 (commit (string-append "v" version))))
544 (file-name (git-file-name name version))
546 (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9"))))
547 (build-system julia-build-system)
549 `(("julia-chainrulescore" ,julia-chainrulescore)
550 ("julia-compat" ,julia-compat)
551 ("julia-finitedifference" ,julia-finitedifferences)))
552 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
553 (synopsis "Common utilities used by downstream automatic differentiation tools")
554 (description "This package is designed to help in testing
555 @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
556 entry points are @code{ChainRulesTestUtils.frule_test},
557 @code{ChainRulesTestUtils.rrule_test}, and
558 @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
559 rules against numerical differentiation (using @code{FiniteDifferences.jl}).
561 @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
562 can be a test-only dependency, allowing it to have potentially heavy
563 dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
564 (license license:expat)))
566 (define-public julia-codeczlib
568 (name "julia-codeczlib")
574 (url "https://github.com/JuliaIO/CodecZlib.jl")
575 (commit (string-append "v" version))))
576 (file-name (git-file-name name version))
578 (base32 "0xm603nylkwk4bzx66zv1g3syzrvn3jh9spdx7kvcvgszzyrrgh4"))))
579 (build-system julia-build-system)
582 (modify-phases %standard-phases
583 (add-before 'reset-gzip-timestamps 'make-files-writable
584 (lambda* (#:key outputs #:allow-other-keys)
585 (let ((out (assoc-ref outputs "out")))
586 (for-each make-file-writable
587 (find-files out "\\.gz$"))
590 `(("julia-zlib-jll" ,julia-zlib-jll)
591 ("julia-transcodingstreams" ,julia-transcodingstreams)))
592 (home-page "https://github.com/JuliaIO/CodecZlib.jl")
593 (synopsis "Zlib codecs for @code{TranscodingStreams.jl}")
594 (description "This package provides zlib codecs for
595 @code{TranscodingStreams.jl}.")
596 (license license:expat)))
598 (define-public julia-colors
600 (name "julia-colors")
606 (url "https://github.com/JuliaGraphics/Colors.jl")
607 (commit (string-append "v" version))))
608 (file-name (git-file-name name version))
610 (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
611 (build-system julia-build-system)
613 `(("julia-colortypes" ,julia-colortypes)
614 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
615 ("julia-reexport" ,julia-reexport)))
616 (home-page "https://github.com/JuliaGraphics/Colors.jl")
617 (synopsis "Tools for dealing with color")
618 (description "This package provides a wide array of functions for dealing
619 with color. This includes conversion between colorspaces, measuring distance
620 between colors, simulating color blindness, parsing colors, and generating
621 color scales for graphics.")
622 (license license:expat)))
624 (define-public julia-colorschemes
626 (name "julia-colorschemes")
632 (url "https://github.com/JuliaGraphics/ColorSchemes.jl")
633 (commit (string-append "v" version))))
634 (file-name (git-file-name name version))
636 (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq"))))
637 (build-system julia-build-system)
639 `(("julia-colors" ,julia-colors)
640 ("julia-colortypes" ,julia-colortypes)
641 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
642 ("julia-staticarrays" ,julia-staticarrays)))
643 (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl")
644 (synopsis "Colorschemes, colormaps, gradients, and palettes")
645 (description "This package provides a collection of colorschemes.")
646 (license license:expat)))
648 (define-public julia-colortypes
650 (name "julia-colortypes")
656 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
657 (commit (string-append "v" version))))
658 (file-name (git-file-name name version))
660 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
661 (build-system julia-build-system)
663 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
665 `(("julia-documenter" ,julia-documenter)))
666 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
667 (synopsis "Basic color types and constructor")
668 (description "This minimalistic package serves as the foundation for
669 working with colors in Julia. It defines basic color types and their
670 constructors, and sets up traits and show methods to make them easier to work
672 (license license:expat)))
674 (define-public julia-colorvectorspace
676 (name "julia-colorvectorspace")
682 (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
683 (commit (string-append "v" version))))
684 (file-name (git-file-name name version))
686 (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi"))))
687 (build-system julia-build-system)
689 `(("julia-colortypes" ,julia-colortypes)
690 ("julia-specialfunctions" ,julia-specialfunctions)
691 ("julia-tensorcore" ,julia-tensorcore)))
693 `(("julia-colors" ,julia-colors)))
694 (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
695 (synopsis "Treat colors as n-vectors for the purposes of arithmetic")
696 (description "This package is an add-on to @code{ColorTypes.jl} and provides
697 fast mathematical operations for objects with types such as RGB and Gray.
698 Specifically, with this package both grayscale and RGB colors are treated as if
699 they are points in a normed vector space.")
700 (license license:expat)))
702 (define-public julia-combinatorics
704 (name "julia-combinatorics")
710 (url "https://github.com/JuliaMath/Combinatorics.jl")
711 (commit (string-append "v" version))))
712 (file-name (git-file-name name version))
714 (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
715 (build-system julia-build-system)
716 (home-page "https://github.com/JuliaMath/Combinatorics.jl")
717 (synopsis "Combinatorics library for Julia")
718 (description "This package provides a combinatorics library for Julia,
719 focusing mostly (as of now) on enumerative combinatorics and permutations.")
720 (license license:expat)))
722 (define-public julia-commonsubexpressions
724 (name "julia-commonsubexpressions")
730 (url "https://github.com/rdeits/CommonSubexpressions.jl")
731 (commit (string-append "v" version))))
732 (file-name (git-file-name name version))
734 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
735 (build-system julia-build-system)
737 `(("julia-macrotools" ,julia-macrotools)))
738 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
739 (synopsis "@code{@@cse} macro for Julia")
740 (description "This package provides the @code{@@cse} macro, which performs
741 common subexpression elimination.")
742 (license license:expat)))
744 (define-public julia-compat
746 (name "julia-compat")
752 (url "https://github.com/JuliaLang/Compat.jl")
753 (commit (string-append "v" version))))
754 (file-name (git-file-name name version))
756 (base32 "0qzvaqi5gqgc747fnajbvvf5vqbh6cwykwky00c7glvmvdsgk3z0"))))
757 (build-system julia-build-system)
758 (home-page "https://github.com/JuliaLang/Compat.jl")
759 (synopsis "Compatibility across Julia versions")
760 (description "The Compat package is designed to ease interoperability
761 between older and newer versions of the Julia language. The Compat package
762 provides a macro that lets you use the latest syntax in a backwards-compatible
764 (license license:expat)))
766 (define-public julia-configurations
768 (name "julia-configurations")
774 (url "https://github.com/Roger-luo/Configurations.jl")
775 (commit (string-append "v" version))))
776 (file-name (git-file-name name version))
778 (base32 "1b23p0zk8dx2sf01cnw177mqci7qd81b9s32ixz9clsh0r0icl1b"))))
779 (build-system julia-build-system)
782 (modify-phases %standard-phases
783 (add-after 'link-depot 'fix-tests
785 (substitute* "test/runtests.jl"
786 (("option.toml") "test/option.toml"))
788 (add-after 'link-depot 'dont-use-exproniconlite
790 (substitute* '("Project.toml"
791 "src/Configurations.jl"
793 (("ExproniconLite") "Expronicon"))
794 (substitute* "Project.toml"
795 (("55351af7-c7e9-48d6-89ff-24e801d99491")
796 "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"))
799 `(("julia-crayons" ,julia-crayons)
800 ("julia-expronicon" ,julia-expronicon)
801 ("julia-orderedcollections" ,julia-orderedcollections)))
802 (home-page "https://configurations.rogerluo.dev/stable/")
803 (synopsis "Tools for options and configurations in Julia")
804 (description "@code{Configurations.jl} provides a macro @code{@@option} to
805 let you define @code{structs} to represent options/configurations, and serialize
806 between different option/configuration file formats such as @code{TOML}.")
807 (license license:expat)))
809 (define-public julia-constructionbase
811 (name "julia-constructionbase")
817 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
818 (commit (string-append "v" version))))
819 (file-name (git-file-name name version))
821 (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q"))))
822 (build-system julia-build-system)
823 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
824 (synopsis "Primitive functions for construction of objects")
825 (description "This very lightweight package provides primitive functions
826 for construction of objects.")
827 (license license:expat)))
829 (define-public julia-coordinatetransformations
831 (name "julia-coordinatetransformations")
837 (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
838 (commit (string-append "v" version))))
839 (file-name (git-file-name name version))
841 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d"))))
842 (build-system julia-build-system)
844 `(("julia-staticarrays" ,julia-staticarrays)))
846 `(("julia-documenter" ,julia-documenter)
847 ("julia-forwarddiff" ,julia-forwarddiff)
848 ("julia-unitful" ,julia-unitful)))
849 (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
850 (synopsis "Coordinate transformations in Julia")
851 (description "@code{CoordinateTransformations} is a Julia package to manage
852 simple or complex networks of coordinate system transformations.
853 Transformations can be easily applied, inverted, composed, and differentiated
854 (both with respect to the input coordinates and with respect to transformation
855 parameters such as rotation angle). Transformations are designed to be
856 light-weight and efficient enough for, e.g., real-time graphical applications,
857 while support for both explicit and automatic differentiation makes it easy to
858 perform optimization and therefore ideal for computer vision applications such
859 as SLAM (simultaneous localization and mapping).")
860 (license license:expat)))
862 (define-public julia-crayons
864 (name "julia-crayons")
870 (url "https://github.com/KristofferC/Crayons.jl")
871 (commit (string-append "v" version))))
872 (file-name (git-file-name name version))
874 (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
875 (build-system julia-build-system)
876 (home-page "https://github.com/KristofferC/Crayons.jl")
877 (synopsis "Colored and styled strings for terminals")
878 (description "Crayons is a package that makes it simple to write strings in
879 different colors and styles to terminals. It supports the 16 system colors,
880 both the 256 color and 24 bit true color extensions, and the different text
881 styles available to terminals.")
882 (license license:expat)))
884 (define-public julia-dataapi
886 (name "julia-dataapi")
892 (url "https://github.com/JuliaData/DataAPI.jl")
893 (commit (string-append "v" version))))
894 (file-name (git-file-name name version))
896 (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7"))))
897 (build-system julia-build-system)
898 (home-page "https://github.com/JuliaData/DataAPI.jl")
899 (synopsis "Data-focused namespace for packages to share functions")
900 (description "This package provides a namespace for data-related generic
901 function definitions to solve the optional dependency problem; packages wishing
902 to share and/or extend functions can avoid depending directly on each other by
903 moving the function definition to DataAPI.jl and each package taking a
905 (license license:expat)))
907 (define-public julia-dataframes
909 (name "julia-dataframes")
915 (url "https://github.com/JuliaData/DataFrames.jl")
916 (commit (string-append "v" version))))
917 (file-name (git-file-name name version))
919 (base32 "1bk0amrghgjrkyn1mm4ac23swwbgszl1d0qyl9137qj5zvv9dasp"))))
920 (build-system julia-build-system)
923 (modify-phases %standard-phases
924 (add-after 'link-depot 'skip-failing-test
926 ;; Tests with non-standard colors.
927 (substitute* "test/show.jl"
928 (("test (sprint\\(show, df, context=:color=>true)" _ test)
929 (string-append "test_nowarn " test)))
930 (substitute* "test/io.jl"
931 (("testset \\\"improved.*" all)
932 (string-append all "return\n")))
933 (substitute* "test/join.jl"
934 (("test (levels\\(outerjoin\\(B)" _ test)
935 (string-append "test_nowarn " test)))
938 `(("julia-dataapi" ,julia-dataapi)
939 ("julia-invertedindices" ,julia-invertedindices)
940 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
941 ("julia-missings" ,julia-missings)
942 ("julia-pooledarrays" ,julia-pooledarrays)
943 ("julia-prettytables" ,julia-prettytables)
944 ("julia-reexport" ,julia-reexport)
945 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
946 ("julia-tables" ,julia-tables)
947 ("julia-tabletraits" ,julia-tabletraits)))
949 `(("julia-categoricalarrays" ,julia-categoricalarrays)
950 ("julia-combinatorics" ,julia-combinatorics)
951 ("julia-datastructures" ,julia-datastructures)
952 ("julia-datavalues" ,julia-datavalues)
953 ("julia-offsetarrays" ,julia-offsetarrays)
954 ("julia-unitful" ,julia-unitful)))
955 (home-page "https://dataframes.juliadata.org/stable/")
956 (synopsis "In-memory tabular data")
957 (description "This package provides a set of tools for working with tabular
958 data in Julia. Its design and functionality are similar to those of Pandas from
959 Python or @code{data.frame}, @code{data.table} and @code{dplyr} from R, making
960 it a great general purpose data science tool, especially for those coming to
961 Julia from R or Python.")
962 (license license:expat)))
964 (define-public julia-datastructures
966 (name "julia-datastructures")
972 (url "https://github.com/JuliaCollections/DataStructures.jl")
973 (commit (string-append "v" version))))
974 (file-name (git-file-name name version))
976 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
978 `(("julia-compat" ,julia-compat)
979 ("julia-orderedcollections" ,julia-orderedcollections)))
980 (build-system julia-build-system)
981 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
982 (synopsis "Julia module providing different data structures")
983 (description "This package implements a variety of data structures,
984 including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
985 @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
986 (license license:expat)))
988 (define-public julia-datavalueinterfaces
990 (name "julia-datavalueinterfaces")
996 (url "https://github.com/queryverse/DataValueInterfaces.jl")
997 (commit (string-append "v" version))))
998 (file-name (git-file-name name version))
1000 (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"))))
1001 (build-system julia-build-system)
1002 (home-page "https://github.com/queryverse/DataValueInterfaces.jl")
1003 (synopsis "Interface for DataValues.jl")
1004 (description "This package allows a few \"forward\" definitions for the
1005 @code{DataValues.jl} package that other packages can utilize for integration
1006 without having to take direct dependencies.")
1007 (license license:expat)))
1009 (define-public julia-datavalues
1011 (name "julia-datavalues")
1017 (url "https://github.com/queryverse/DataValues.jl")
1018 (commit (string-append "v" version))))
1019 (file-name (git-file-name name version))
1021 (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
1022 (build-system julia-build-system)
1024 `(#:tests? #f ; Tests need upgrading with newer Julia version.
1026 (modify-phases %standard-phases
1027 (add-after 'link-depot 'skip-known-failing-tests
1029 ;; See upstream report:
1030 ;; https://github.com/queryverse/DataValues.jl/issues/83
1031 (substitute* "test/array/test_reduce.jl"
1032 ((".*DataValue\\(mapreduce.*") "")
1033 ((".*DataValue\\(method\\(f.*") ""))
1036 `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces)))
1037 (home-page "https://github.com/queryverse/DataValues.jl")
1038 (synopsis "Missing values for Julia")
1039 (description "This package provides the type @code{DataValue} that is used
1040 to represent missing data.")
1041 (license license:expat)))
1043 (define-public julia-deepdiffs
1045 (name "julia-deepdiffs")
1051 (url "https://github.com/ssfrr/DeepDiffs.jl")
1052 (commit (string-append "v" version))))
1053 (file-name (git-file-name name version))
1055 (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds"))))
1056 (build-system julia-build-system)
1057 (home-page "https://github.com/ssfrr/DeepDiffs.jl")
1058 (synopsis "Compute and pretty-print diffs for data structures")
1059 (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function,
1060 which finds and displays differences (diffs) between Julia data structures. It
1061 supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing
1062 dictionaries where values associated with a particular key may change,
1063 @code{deepdiff} will recurse into value to provide a more detailed diff.")
1064 (license license:expat)))
1066 (define-public julia-dictionaries
1068 (name "julia-dictionaries")
1074 (url "https://github.com/andyferris/Dictionaries.jl")
1075 (commit (string-append "v" version))))
1076 (file-name (git-file-name name version))
1078 (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5"))))
1079 (build-system julia-build-system)
1081 `(("julia-indexing" ,julia-indexing)))
1082 (home-page "https://github.com/andyferris/Dictionaries.jl")
1083 (synopsis "Alternative interface for dictionaries in Julia")
1084 (description "This package provides an alternative interface for
1085 dictionaries in Julia, for improved productivity and performance.")
1086 (license license:expat)))
1088 (define-public julia-distances
1090 (name "julia-distances")
1096 (url "https://github.com/JuliaStats/Distances.jl")
1097 (commit (string-append "v" version))))
1098 (file-name (git-file-name name version))
1100 (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
1101 (build-system julia-build-system)
1104 (modify-phases %standard-phases
1105 (add-after 'link-depot 'skip-flakey-tests
1107 ;; Some combination of these tests fail nondeterministically
1108 ;; each of the times this package is built.
1109 (substitute* "test/test_dists.jl"
1110 (("test dyz ≥") "test_nowarn dyz ≥")
1111 (("test dist\\(y, x") "test_nowarn dist(y, x")
1112 (("test dist\\(z, x") "test_nowarn dist(z, x")
1113 (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
1115 `(("julia-statsapi" ,julia-statsapi)))
1117 `(("julia-offsetarrays" ,julia-offsetarrays)
1118 ("julia-unitful" ,julia-unitful)))
1119 (home-page "https://github.com/JuliaStats/Distances.jl")
1120 (synopsis "Julia package for evaluating distances (metrics) between vectors")
1121 (description "A Julia package for evaluating distances(metrics) between
1122 vectors. This package also provides optimized functions to compute column-wise
1123 and pairwise distances, which are often substantially faster than a
1124 straightforward loop implementation.")
1125 (license license:expat)))
1127 (define-public julia-docstringextensions
1129 (name "julia-docstringextensions")
1135 (url "https://github.com/JuliaDocs/DocStringExtensions.jl")
1136 (commit (string-append "v" version))))
1137 (file-name (git-file-name name version))
1139 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
1140 (build-system julia-build-system)
1142 `(#:tests? #f)) ; Tests try to read SSL certificates.
1143 (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
1144 (synopsis "Extensions for Julia's docsystem")
1145 (description "This package provides a collection of useful extensions for
1146 Julia's built-in docsystem. These are features that are not yet mature enough
1147 to be considered for inclusion in Base, or that have sufficiently niche use
1148 cases that including them with the default Julia installation is not seen as
1149 valuable enough at this time.")
1150 (license license:expat)))
1152 ;; By removing all the javascript and css downloads any HTML documentation
1153 ;; produced by this package will not be very useful.
1154 (define-public julia-documenter
1156 (name "julia-documenter")
1162 (url "https://github.com/JuliaDocs/Documenter.jl")
1163 (commit (string-append "v" version))))
1164 (file-name (git-file-name name version))
1166 (base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam"))))
1167 (build-system julia-build-system)
1170 (modify-phases %standard-phases
1171 (add-after 'link-depot 'patch-source
1172 (lambda* (#:key inputs #:allow-other-keys)
1173 (substitute* "src/Deps.jl"
1175 (string-append (assoc-ref inputs "python")
1176 "/bin/pip install")))
1178 (add-after 'link-depot 'remove-javascript-downloads
1180 (substitute* "src/Writers/HTMLWriter.jl"
1181 (("cdnjs.cloudflare.com") "example.com"))
1182 ;; Removing the javascript downloads causes these tests fail.
1183 (substitute* "test/examples/tests.jl"
1184 ((".*Main\\.examples_html_doc.*") "")
1185 ((".*Main\\.examples_html_mathjax3_doc.*") ""))
1188 `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
1189 ("julia-docstringextensions" ,julia-docstringextensions)
1190 ("julia-iocapture" ,julia-iocapture)
1191 ("julia-json" ,julia-json)))
1193 `(("python" ,python-wrapper)))
1195 `(("git" ,git-minimal)
1196 ("julia-documentermarkdown" ,julia-documentermarkdown)
1197 ("julia-documentertools" ,julia-documentertools)))
1198 (home-page "https://juliadocs.github.io/Documenter.jl")
1199 (synopsis "Documentation generator for Julia")
1200 (description "This package provides a documentation generator for Julia.")
1201 (license license:expat)))
1203 (define julia-documenter-bootstrap
1205 (inherit julia-documenter)
1206 (name "julia-documenter-bootstrap")
1208 (substitute-keyword-arguments (package-arguments julia-documenter)
1210 `(modify-phases ,phases
1211 (delete 'patch-source)))
1212 ;; Not all dependencies available in bootstrap version.
1213 ((#:tests? _ #f) #f)))
1215 (native-inputs `())))
1217 (define-public julia-documentermarkdown
1219 (name "julia-documentermarkdown")
1225 (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1226 (commit (string-append "v" version))))
1227 (file-name (git-file-name name version))
1229 (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
1230 (build-system julia-build-system)
1232 ;; We don't want to propagate the bootstrap version.
1233 ;; Cycle with Documenter.jl in later versions.
1234 `(("julia-documenter" ,julia-documenter-bootstrap)))
1235 (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1236 (synopsis "Documenter's Markdown")
1237 (description "This package enables the Markdown / MkDocs backend of
1238 @code{Documenter.jl}.")
1239 (license license:expat)))
1241 (define-public julia-documentertools
1243 (name "julia-documentertools")
1249 (url "https://github.com/JuliaDocs/DocumenterTools.jl")
1250 (commit (string-append "v" version))))
1251 (file-name (git-file-name name version))
1253 (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
1254 (build-system julia-build-system)
1256 `(#:tests? #f)) ; Tests require network.
1258 ;; We don't want to propagate the bootstrap version.
1259 ;; Cycle with Documenter.jl in later versions.
1260 `(("julia-documenter" ,julia-documenter-bootstrap)))
1262 `(("julia-docstringextensions" ,julia-docstringextensions)
1263 ("julia-gumbo" ,julia-gumbo)
1264 ("julia-sass" ,julia-sass)))
1266 `(("julia-example" ,julia-example)))
1267 (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
1268 (synopsis "Extra tools for setting up Documenter.jl")
1269 (description "This package contains utilities for setting up documentation
1270 generation with @code{Documenter.jl}.")
1271 (license license:expat)))
1273 (define-public julia-diffresults
1275 (name "julia-diffresults")
1281 (url "https://github.com/JuliaDiff/DiffResults.jl")
1282 (commit (string-append "v" version))))
1283 (file-name (git-file-name name version))
1285 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
1287 `(("julia-staticarrays" ,julia-staticarrays)))
1288 (build-system julia-build-system)
1289 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
1290 (synopsis "In-place differentiation methods of primal values at multi-order")
1291 (description "This package provides the @code{DiffResult} type, which can
1292 be passed to in-place differentiation methods instead of an output buffer.")
1293 (license license:expat)))
1295 (define-public julia-diffrules
1297 (name "julia-diffrules")
1303 (url "https://github.com/JuliaDiff/DiffRules.jl")
1304 (commit (string-append "v" version))))
1305 (file-name (git-file-name name version))
1307 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
1309 `(("julia-nanmath" ,julia-nanmath)
1310 ("julia-specialfunctions" ,julia-specialfunctions)))
1311 (build-system julia-build-system)
1312 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
1313 (synopsis "Primitive differentiation rules")
1314 (description "This package provides primitive differentiation rules that
1315 can be composed via various formulations of the chain rule. Using
1316 @code{DiffRules}, new differentiation rules can defined, query whether or not
1317 a given rule exists, and symbolically apply rules to simple Julia expressions.")
1318 (license license:expat)))
1320 (define-public julia-difftests
1322 (name "julia-difftests")
1328 (url "https://github.com/JuliaDiff/DiffTests.jl")
1329 (commit (string-append "v" version))))
1330 (file-name (git-file-name name version))
1332 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
1333 (build-system julia-build-system)
1334 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
1335 (synopsis "Common test functions for differentiation tools")
1336 (description "This package contains a common suite of test functions for
1337 stressing the robustness of differentiation tools.")
1338 (license license:expat)))
1340 (define-public julia-dualnumbers
1342 (name "julia-dualnumbers")
1348 (url "https://github.com/JuliaDiff/DualNumbers.jl")
1349 (commit (string-append "v" version))))
1350 (file-name (git-file-name name version))
1352 (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
1353 (build-system julia-build-system)
1356 (modify-phases %standard-phases
1357 (add-after 'link-depot 'adjust-test-suite
1359 (substitute* "test/runtests.jl"
1360 ;; Seems to not play nicely with SpecialFunctions
1361 ((".*isempty.*") "")))))))
1363 `(("julia-calculus" ,julia-calculus)
1364 ("julia-nanmath" ,julia-nanmath)
1365 ("julia-specialfunctions" ,julia-specialfunctions)))
1366 (home-page "https://github.com/JuliaDiff/DualNumbers.jl")
1367 (synopsis "Represent dual numbers and for perform dual algebra")
1368 (description "The @code{DualNumbers} Julia package defines the @code{Dual}
1369 type to represent dual numbers, and supports standard mathematical operations on
1370 them. Conversions and promotions are defined to allow performing operations on
1371 combinations of dual numbers with predefined Julia numeric types.")
1372 (license license:expat)))
1374 (define-public julia-ellipsisnotation
1376 (name "julia-ellipsisnotation")
1382 (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1383 (commit (string-append "v" version))))
1384 (file-name (git-file-name name version))
1386 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
1387 (build-system julia-build-system)
1390 (modify-phases %standard-phases
1391 (add-after 'link-depot 'adjust-test-suite
1393 (substitute* "test/runtests.jl"
1394 ;; Seems to not play nicely with Julia-1.6.
1395 ((".*basic.jl.*") "")))))))
1397 `(("julia-arrayinterface" ,julia-arrayinterface)))
1398 (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1399 (synopsis "Elipsis notation implementation")
1400 (description "This implements the notation @code{..} for indexing arrays.
1401 It's similar to the Python @code{...} in that it means \"all of the columns
1402 before (or after)\".")
1403 (license license:expat)))
1405 (define-public julia-example
1406 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
1408 (name "julia-example")
1409 (version "0.5.4") ;tag not created upstream
1414 (url "https://github.com/JuliaLang/Example.jl")
1416 (file-name (git-file-name name version))
1418 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
1419 (build-system julia-build-system)
1420 (home-page "https://github.com/JuliaLang/Example.jl")
1421 (synopsis "Module providing examples")
1422 (description "This package provides various examples.")
1423 (license license:expat))))
1425 ;; ExproniconLite.jl is autogenerated from this package.
1426 (define-public julia-expronicon
1428 (name "julia-expronicon")
1434 (url "https://github.com/Roger-luo/Expronicon.jl")
1435 (commit (string-append "v" version))))
1436 (file-name (git-file-name name version))
1438 (base32 "0h8aaynqlxrkn8575k5vqmhzil4vvxchhf0bcxa6zwawp558gj2y"))))
1439 (build-system julia-build-system)
1442 (modify-phases %standard-phases
1443 (add-after 'link-depot 'skip-network-tests
1445 (substitute* "test/runtests.jl"
1446 ;; This test tries to access the Julia package registry.
1447 ((".*expand\\.jl.*") "")))))))
1449 `(("julia-mlstyle" ,julia-mlstyle)))
1451 `(("julia-documenter" ,julia-documenter)))
1452 (home-page "https://expronicon.rogerluo.dev/dev/")
1453 (synopsis "Collective tools for metaprogramming on Julia Expr")
1454 (description "This package provides a collection of tools for
1455 metaprogramming on Julia Expr, the meta programming standard library for
1457 (license license:expat)))
1459 (define-public julia-exprtools
1461 (name "julia-exprtools")
1467 (url "https://github.com/invenia/ExprTools.jl")
1468 (commit (string-append "v" version))))
1469 (file-name (git-file-name name version))
1471 (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4"))))
1472 (build-system julia-build-system)
1473 (home-page "https://github.com/invenia/ExprTools.jl")
1474 (synopsis "Light-weight expression manipulation tools")
1475 (description "@code{ExprTools} provides tooling for working with Julia
1476 expressions during metaprogramming. This package aims to provide light-weight
1477 performant tooling without requiring additional package dependencies.")
1478 (license license:expat)))
1480 (define-public julia-ffmpeg
1482 (name "julia-ffmpeg")
1488 (url "https://github.com/JuliaIO/FFMPEG.jl")
1489 (commit (string-append "v" version))))
1490 (file-name (git-file-name name version))
1492 (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b"))))
1493 (build-system julia-build-system)
1495 `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
1496 ("julia-x264-jll" ,julia-x264-jll)))
1497 (home-page "https://github.com/JuliaIO/FFMPEG.jl")
1498 (synopsis "Julia Package for ffmpeg")
1499 (description "This package is made to be included into packages that just
1500 need the ffmpeg binaries + executables, and don't want the overhead of
1501 @code{VideoIO.jl}.")
1502 (license license:expat)))
1504 (define-public julia-fileio
1506 (name "julia-fileio")
1512 (url "https://github.com/JuliaIO/FileIO.jl")
1513 (commit (string-append "v" version))))
1514 (file-name (git-file-name name version))
1516 (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
1517 (build-system julia-build-system)
1520 (modify-phases %standard-phases
1521 (delete 'reset-gzip-timestamps)
1522 (add-after 'link-depot 'skip-network-tests
1524 ;; These tests try to download audio/video files.
1525 (substitute* "test/query.jl"
1526 (("testset.*(MP4|OGG|MATROSKA).*" all)
1527 (string-append all "return\n")))
1528 (substitute* "test/loadsave.jl"
1529 (("testset.*CSVFiles.*" all)
1530 (string-append all "return\n")))
1531 ;; This test tries to download a Julia package.
1532 (substitute* "test/error_handling.jl"
1533 (("testset.*Not installed.*" all)
1534 (string-append all "return\n")))
1535 ;; This test tries to write to the store.
1536 ;; (Error says can't find User 0)
1537 (substitute* "test/runtests.jl"
1538 ((".*test_mimesave.*") "")))))))
1540 `(("julia-requires" ,julia-requires)))
1542 `(("julia-colortypes" ,julia-colortypes)
1543 ("julia-filepathsbase" ,julia-filepathsbase)
1544 ("julia-http" ,julia-http)))
1545 (home-page "https://github.com/JuliaIO/FileIO.jl")
1546 (synopsis "Main Package for IO, loading all different kind of files")
1547 (description "@code{FileIO} aims to provide a common framework for detecting
1548 file formats and dispatching to appropriate readers/writers. The two core
1549 functions in this package are called @code{load} and @code{save}, and offer
1550 high-level support for formatted files (in contrast with Julia's low-level
1551 @code{read} and @code{write}).")
1552 (license license:expat)))
1554 (define-public julia-filepathsbase
1556 (name "julia-filepathsbase")
1562 (url "https://github.com/rofinn/FilePathsBase.jl")
1563 (commit (string-append "v" version))))
1564 (file-name (git-file-name name version))
1566 (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
1567 (build-system julia-build-system)
1569 `(#:tests? #f)) ; Cycle with JLSO.jl
1570 (home-page "https://github.com/rofinn/FilePathsBase.jl")
1571 (synopsis "Filesystem path types in Julia")
1572 (description "@code{FilePathsBase.jl} provides a type based approach to
1573 working with filesystem paths in Julia.")
1574 (license license:expat)))
1576 (define-public julia-fillarrays
1578 (name "julia-fillarrays")
1584 (url "https://github.com/JuliaArrays/FillArrays.jl")
1585 (commit (string-append "v" version))))
1586 (file-name (git-file-name name version))
1588 (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz"))))
1589 (build-system julia-build-system)
1590 (inputs ;required by tests
1591 `(("julia-staticarrays" ,julia-staticarrays)))
1592 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
1593 (synopsis "Lazy matrix representation")
1594 (description "This package lazily represents matrices filled with
1595 a single entry, as well as identity matrices. This package exports the
1596 following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
1597 @code{Trues} and @code{Falses}.")
1598 (license license:expat)))
1600 (define-public julia-finitediff
1602 (name "julia-finitediff")
1608 (url "https://github.com/JuliaDiff/FiniteDiff.jl")
1609 (commit (string-append "v" version))))
1610 (file-name (git-file-name name version))
1612 (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq"))))
1613 (build-system julia-build-system)
1616 (modify-phases %standard-phases
1617 (add-before 'check 'pre-check
1619 ;; We don't want to run all the tests; the Downstream tests
1620 ;; try to download the package registry.
1621 (setenv "GROUP" "Core")
1624 `(("julia-arrayinterface" ,julia-arrayinterface)
1625 ("julia-requires" ,julia-requires)
1626 ("julia-staticarrays" ,julia-staticarrays)))
1628 `(("julia-bandedmatrices" ,julia-bandedmatrices)
1629 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
1630 ("julia-safetestsets" ,julia-safetestsets)))
1631 (home-page "https://github.com/JuliaDiff/FiniteDiff.jl")
1632 (synopsis "Calculations of gradients, Jacobians, and Hessians")
1633 (description "This package is for calculating derivatives, gradients,
1634 Jacobians, Hessians, etc. numerically. This library is for maximizing speed
1635 while giving a usable interface to end users in a way that specializes on array
1636 types and sparsity.")
1637 (license license:expat)))
1639 (define-public julia-finitedifferences
1641 (name "julia-finitedifferences")
1647 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
1648 (commit (string-append "v" version))))
1649 (file-name (git-file-name name version))
1651 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
1652 (build-system julia-build-system)
1654 `(("julia-benchmarktools" ,julia-benchmarktools)))
1656 `(("julia-chainrulescore" ,julia-chainrulescore)
1657 ("julia-richardson" ,julia-richardson)
1658 ("julia-staticarrays" ,julia-staticarrays)))
1659 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
1660 (synopsis "Estimates derivatives with finite differences")
1661 (description "This package calculates approximate derivatives numerically
1662 using finite difference.")
1663 (license license:expat)))
1665 (define-public julia-fixedpointnumbers
1667 (name "julia-fixedpointnumbers")
1673 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
1674 (commit (string-append "v" version))))
1675 (file-name (git-file-name name version))
1677 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
1678 (build-system julia-build-system)
1681 (modify-phases %standard-phases
1682 (add-after 'link-depot 'disable-failing-test
1683 (lambda* (#:key outputs #:allow-other-keys)
1684 (substitute* "test/fixed.jl"
1685 ;; A deprecation warning is not thrown
1686 (("@test_logs.*:warn" all) (string-append "# " all)))
1688 (propagated-inputs `(("julia-compat" ,julia-compat)))
1689 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
1690 (synopsis "Fixed point types for Julia")
1691 (description "@code{FixedPointNumbers.jl} implements fixed-point number
1692 types for Julia. A fixed-point number represents a fractional, or
1693 non-integral, number. In contrast with the more widely known floating-point
1694 numbers, with fixed-point numbers the decimal point doesn't \"float\":
1695 fixed-point numbers are effectively integers that are interpreted as being
1696 scaled by a constant factor. Consequently, they have a fixed number of
1697 digits (bits) after the decimal (radix) point.")
1698 (license license:expat)))
1700 (define-public julia-formatting
1702 (name "julia-formatting")
1708 (url "https://github.com/JuliaIO/Formatting.jl")
1709 (commit (string-append "v" version))))
1710 (file-name (git-file-name name version))
1712 (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh"))))
1713 (build-system julia-build-system)
1714 (home-page "https://github.com/JuliaIO/Formatting.jl")
1715 (synopsis "Julia package to provide Python-like formatting support")
1716 (description "This package offers Python-style general formatting and
1717 c-style numerical formatting.")
1718 (license license:expat)))
1720 (define-public julia-forwarddiff
1722 (name "julia-forwarddiff")
1728 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
1729 (commit (string-append "v" version))))
1730 (file-name (git-file-name name version))
1732 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
1733 (build-system julia-build-system)
1734 (inputs ;required for tests
1735 `(("julia-calculus" ,julia-calculus)
1736 ("julia-difftests" ,julia-difftests)))
1738 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
1739 ("julia-diffresults" ,julia-diffresults)
1740 ("julia-diffrules" ,julia-diffrules)
1741 ("julia-nanmath" ,julia-nanmath)
1742 ("julia-specialfunctions" ,julia-specialfunctions)
1743 ("julia-staticarrays" ,julia-staticarrays)))
1744 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
1745 (synopsis "Methods to take multidimensional derivatives")
1746 (description "This package implements methods to take derivatives,
1747 gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
1748 functions (or any callable object, really) using forward mode automatic
1749 differentiation (AD).")
1750 (license license:expat)))
1752 (define-public julia-functionwrappers
1754 (name "julia-functionwrappers")
1760 (url "https://github.com/yuyichao/FunctionWrappers.jl")
1761 (commit (string-append "v" version))))
1762 (file-name (git-file-name name version))
1764 (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
1765 (build-system julia-build-system)
1768 (modify-phases %standard-phases
1769 (add-after 'link-depot 'adjust-tests
1771 (substitute* "test/runtests.jl"
1772 (("testset \\\"Abstract.*" all)
1773 (string-append all "return\n"))))))))
1774 (home-page "https://github.com/yuyichao/FunctionWrappers.jl")
1775 (synopsis "Type stable and efficient wrapper of arbitrary functions")
1776 (description "This package provides a type stable and efficient wrapper of
1777 arbitrary functions.")
1778 (license license:expat)))
1780 (define-public julia-functors
1782 (name "julia-functors")
1788 (url "https://github.com/FluxML/Functors.jl")
1789 (commit (string-append "v" version))))
1790 (file-name (git-file-name name version))
1792 (base32 "03ry1wn1y2jssq65l29bi6q4ki041aa6gl1nd2w6cgl00k2mrxf3"))))
1793 (build-system julia-build-system)
1794 (home-page "https://fluxml.ai/Functors.jl/stable/")
1795 (synopsis "Design pattern for structures as in machine learning")
1796 (description "This package provides tools to express a design pattern for
1797 dealing with large/ nested structures, as in machine learning and
1798 optimisation. For large machine learning models it can be cumbersome or
1799 inefficient to work with parameters as one big, flat vector, and structs help
1800 in managing complexity; but it is also desirable to easily operate over all
1801 parameters at once, e.g. for changing precision or applying an optimiser
1803 (license license:expat)))
1805 (define-public julia-fuzzycompletions
1807 (name "julia-fuzzycompletions")
1813 (url "https://github.com/JunoLab/FuzzyCompletions.jl")
1814 (commit (string-append "v" version))))
1815 (file-name (git-file-name name version))
1817 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
1818 (build-system julia-build-system)
1821 (modify-phases %standard-phases
1822 (add-after 'link-depot 'skip-failing-test
1824 (substitute* "test/runtests.jl"
1825 ((".*RPLE.*") "")))))))
1826 (home-page "https://github.com/JunoLab/FuzzyCompletions.jl")
1827 (synopsis "Fuzzy completion provider for Julia")
1829 "FuzzyCompletions provides fuzzy completions for a Julia runtime session.")
1830 (license license:expat)))
1832 (define-public julia-genericlinearalgebra
1834 (name "julia-genericlinearalgebra")
1840 (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1841 (commit (string-append "v" version))))
1842 (file-name (git-file-name name version))
1844 (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
1845 (build-system julia-build-system)
1848 (modify-phases %standard-phases
1849 (add-after 'link-depot 'adjust-test-suite
1851 (substitute* "test/runtests.jl"
1852 ((".*lapack.*") "")))))))
1854 `(("julia-quaternions" ,julia-quaternions)))
1855 (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1856 (synopsis "Generic numerical linear algebra")
1857 (description "The purpose of this package is partly to extend linear algebra
1858 functionality in base to cover generic element types, e.g. @code{BigFloat} and
1859 @code{Quaternion}, and partly to be a place to experiment with fast linear
1860 algebra routines written in Julia (except for optimized BLAS).")
1861 (license license:expat)))
1863 (define-public julia-genericschur
1865 (name "julia-genericschur")
1871 (url "https://github.com/RalphAS/GenericSchur.jl")
1872 (commit (string-append "v" version))))
1873 (file-name (git-file-name name version))
1875 (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d"))))
1876 (build-system julia-build-system)
1879 (modify-phases %standard-phases
1880 (add-after 'link-depot 'adjust-test-suite
1882 (substitute* "test/complex.jl"
1883 ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
1884 (("A = _example") "#A = _example")
1885 (("schurtest\\(A,20\\)") ""))
1886 (substitute* "test/runtests.jl"
1887 ;; Test errors relating to liblapack.so
1888 ((".*complex\\.jl.*") "")
1889 ((".*real\\.jl.*") "")
1890 ;; GenericSVD is deprecated upstream
1891 ((".*gordschur\\.jl.*") "")))))))
1892 (home-page "https://github.com/RalphAS/GenericSchur.jl")
1893 (synopsis "Schur decomposition of matrices with generic element types")
1894 (description "The Schur decomposition is the workhorse for eigensystem
1895 analysis of dense matrices. The diagonal eigen-decomposition of normal
1896 (especially Hermitian) matrices is an important special case, but for non-normal
1897 matrices the Schur form is often more useful.")
1898 (license license:expat)))
1900 (define-public julia-geometrybasics
1902 (name "julia-geometrybasics")
1908 (url "https://github.com/JuliaGeometry/GeometryBasics.jl")
1909 (commit (string-append "v" version))))
1910 (file-name (git-file-name name version))
1912 (base32 "057j3hjpli3q5b98cqkpi4p10x2k9pyksrz62hjmv1kb5qzdvhsj"))))
1913 (build-system julia-build-system)
1916 (modify-phases %standard-phases
1917 (add-after 'link-depot 'remove-earcut
1919 (substitute* '("Project.toml"
1920 "src/GeometryBasics.jl")
1921 ((".*EarCut.*") ""))
1923 (add-after 'link-depot 'skip-incompatible-test
1925 (substitute* "test/runtests.jl"
1926 (("@testset.*MetaT and heterogeneous data.*" all)
1927 (string-append all "return\n")))
1930 `(("julia-itertools" ,julia-itertools)
1931 ("julia-staticarrays" ,julia-staticarrays)
1932 ("julia-structarrays" ,julia-structarrays)
1933 ("julia-tables" ,julia-tables)))
1935 `(("julia-offsetarrays" ,julia-offsetarrays)))
1936 (home-page "https://github.com/JuliaGeometry/GeometryBasics.jl")
1937 (synopsis "Basic Geometry Types")
1938 (description "This package aims to offer a standard set of Geometry types,
1939 which easily work with metadata, query frameworks on geometries and different
1940 memory layouts. The aim is to create a solid basis for Graphics/Plotting,
1941 finite elements analysis, Geo applications, and general geometry manipulations
1942 - while offering a Julian API, that still allows performant C-interop.")
1943 (license license:expat)))
1945 (define-public julia-gr
1953 (url "https://github.com/jheinen/GR.jl")
1954 (commit (string-append "v" version))))
1955 (file-name (git-file-name name version))
1957 (base32 "18zxa1w2wmrf44c5l10qbh99zjdp7h94gxlymh47cf5kj5fc4xmx"))))
1958 (build-system julia-build-system)
1960 `(("julia-gr-jll" ,julia-gr-jll)))
1961 (home-page "https://github.com/jheinen/GR.jl")
1962 (synopsis "Plotting for Julia based on GR")
1963 (description "This module provides a Julia interface to GR, a framework for
1964 visualisation applications.")
1965 (license license:expat)))
1967 (define-public julia-graphics
1969 (name "julia-graphics")
1975 (url "https://github.com/JuliaGraphics/Graphics.jl")
1976 (commit (string-append "v" version))))
1977 (file-name (git-file-name name version))
1979 (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn"))))
1980 (build-system julia-build-system)
1982 `(("julia-colors" ,julia-colors)
1983 ("julia-nanmath" ,julia-nanmath)))
1984 (home-page "https://github.com/JuliaGraphics/Graphics.jl")
1985 (synopsis "Base graphics in Julia")
1986 (description "@code{Graphics.jl} is an abstraction layer for graphical
1987 operations in Julia.")
1988 (license license:expat)))
1990 (define-public julia-gumbo
1992 (name "julia-gumbo")
1998 (url "https://github.com/JuliaWeb/Gumbo.jl")
1999 (commit (string-append "v" version))))
2000 (file-name (git-file-name name version))
2002 (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
2003 (build-system julia-build-system)
2005 `(("julia-abstracttrees" ,julia-abstracttrees)
2006 ("julia-gumbo-jll" ,julia-gumbo-jll)))
2007 (home-page "https://github.com/JuliaWeb/Gumbo.jl")
2008 (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
2009 (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
2010 library for parsing HTML.")
2011 (license license:expat)))
2013 (define-public julia-http
2021 (url "https://github.com/JuliaWeb/HTTP.jl")
2022 (commit (string-append "v" version))))
2023 (file-name (git-file-name name version))
2025 (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk"))))
2026 (build-system julia-build-system)
2029 (modify-phases %standard-phases
2030 (add-before 'install 'disable-network-tests
2032 (substitute* "test/runtests.jl"
2033 (("\"async.jl") "# \"async.jl")
2034 (("\"client.jl") "# \"client.jl"))
2035 (substitute* "test/aws4.jl"
2036 (("@testset.*HTTP.request with AWS authentication.*" all)
2037 (string-append all "return\n")))
2038 (substitute* "test/insert_layers.jl"
2039 (("@testset.*Inserted final layer runs handler.*" all)
2040 (string-append all "return\n")))
2041 (substitute* "test/multipart.jl"
2042 (("@testset \"Setting of Content-Type.*" all)
2043 (string-append all "return\n"))
2044 (("@testset \"Deprecation of .*" all)
2045 (string-append all "return\n")))
2046 (substitute* "test/websockets.jl"
2047 (("@testset.*External Host.*" all)
2048 (string-append all "return\n")))
2049 (substitute* "test/messages.jl"
2050 (("@testset.*Read methods.*" all)
2051 (string-append all "return\n"))
2052 (("@testset.*Body - .*" all)
2053 (string-append all "return\n"))
2054 (("@testset.*Write to file.*" all)
2055 (string-append all "return\n")))
2058 `(("julia-inifile" ,julia-inifile)
2059 ("julia-mbedtls" ,julia-mbedtls)
2060 ("julia-uris" ,julia-uris)))
2061 ;; required for tests
2063 `(("julia-json" ,julia-json)
2064 ("julia-bufferedstreams" ,julia-bufferedstreams)))
2065 (home-page "https://juliaweb.github.io/HTTP.jl/")
2066 (synopsis "HTTP support for Julia")
2067 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
2068 implementing both a client and a server.")
2069 (license license:expat)))
2071 (define-public julia-identityranges
2073 (name "julia-identityranges")
2079 (url "https://github.com/JuliaArrays/IdentityRanges.jl")
2080 (commit (string-append "v" version))))
2081 (file-name (git-file-name name version))
2083 (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml"))))
2084 (build-system julia-build-system)
2086 `(("julia-offsetarrays" ,julia-offsetarrays)))
2087 (home-page "https://github.com/JuliaArrays/IdentityRanges.jl")
2088 (synopsis "Ranges that preserve indices of views")
2089 (description "@code{IdentityRanges} are Julia-language a helper type for
2090 creating \"views\" of arrays. They are a custom type of AbstractUnitRange that
2091 makes it easy to preserve the indices of array views. The key property of an
2092 @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the
2093 type/package), and that they support arbitrary start/stop indices (i.e., not
2094 just starting at 1).")
2095 (license license:expat)))
2097 (define-public julia-ifelse
2099 (name "julia-ifelse")
2105 (url "https://github.com/sciml/ifelse.jl")
2106 (commit (string-append "v" version))))
2107 (file-name (git-file-name name version))
2109 (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
2110 (build-system julia-build-system)
2111 (home-page "https://github.com/sciml/ifelse.jl")
2112 (synopsis "Function form of the if-else conditional statement")
2113 (description "This package provides a convenient function form of the
2114 conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
2115 (license license:expat)))
2117 (define-public julia-imageaxes
2119 (name "julia-imageaxes")
2125 (url "https://github.com/JuliaImages/ImageAxes.jl")
2126 (commit (string-append "v" version))))
2127 (file-name (git-file-name name version))
2129 (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd"))))
2130 (build-system julia-build-system)
2132 `(("julia-axisarrays" ,julia-axisarrays)
2133 ("julia-imagecore" ,julia-imagecore)
2134 ("julia-reexport" ,julia-reexport)
2135 ("julia-simpletraits" ,julia-simpletraits)))
2137 `(("julia-unitful" ,julia-unitful)))
2138 (home-page "https://github.com/JuliaImages/ImageAxes.jl")
2139 (synopsis "Julia package for giving \"meaning\" to the axes of an image")
2140 (description "This small package supports the representation of images as
2141 @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with
2142 such arrays easy via traits.")
2143 (license license:expat)))
2145 (define-public julia-imagebase
2147 (name "julia-imagebase")
2153 (url "https://github.com/JuliaImages/ImageBase.jl")
2154 (commit (string-append "v" version))))
2155 (file-name (git-file-name name version))
2157 (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
2158 (build-system julia-build-system)
2160 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2162 `(("julia-imagecore" ,julia-imagecore)
2163 ("julia-reexport" ,julia-reexport)))
2165 ; `(("julia-imagemagick" ,julia-imagemagick)
2166 ; ("julia-offsetarrays" ,julia-offsetarrays)
2167 ; ("julia-testimages" ,julia-testimages)))
2168 (home-page "https://github.com/JuliaImages/ImageBase.jl")
2169 (synopsis "Wrapper package around ImageCore")
2170 (description "This is a twin package to @code{ImageCore} with functions that
2171 are used among many of the packages in JuliaImages. The main purpose of this
2172 package is to reduce unnecessary compilation overhead from external
2174 (license license:expat)))
2176 (define-public julia-imagecore
2178 (name "julia-imagecore")
2184 (url "https://github.com/JuliaImages/ImageCore.jl")
2185 (commit (string-append "v" version))))
2186 (file-name (git-file-name name version))
2188 (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq"))))
2189 (build-system julia-build-system)
2191 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2193 `(("julia-abstractffts" ,julia-abstractffts)
2194 ("julia-colors" ,julia-colors)
2195 ("julia-colorvectorspace" ,julia-colorvectorspace)
2196 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2197 ("julia-graphics" ,julia-graphics)
2198 ("julia-mappedarrays" ,julia-mappedarrays)
2199 ("julia-mosaicviews" ,julia-mosaicviews)
2200 ("julia-offsetarrays" ,julia-offsetarrays)
2201 ("julia-paddedviews" ,julia-paddedviews)
2202 ("julia-reexport" ,julia-reexport)))
2204 ; `(("julia-aqua" ,julia-aqua)
2205 ; ("julia-colorvectorspace" ,julia-colorvectorspace)
2206 ; ("julia-documenter" ,julia-documenter)
2207 ; ("julia-fftw" ,julia-fftw)
2208 ; ("julia-imageinterminal" ,julia-imageinterminal)
2209 ; ("julia-imagemagick" ,julia-imagemagick)
2210 ; ("julia-referencetests" ,julia-referencetests)
2211 ; ("julia-statistics" ,julia-statistics)))
2212 (home-page "https://github.com/JuliaImages/ImageCore.jl")
2213 (synopsis "Julia types for representing images")
2214 (description "@code{ImageCore} is the lowest-level component of the system
2215 of packages designed to support image processing and computer vision.")
2216 (license license:expat)))
2218 (define-public julia-imageinterminal
2220 (name "julia-imageinterminal")
2226 (url "https://github.com/JuliaImages/ImageInTerminal.jl")
2227 (commit (string-append "v" version))))
2228 (file-name (git-file-name name version))
2230 (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
2231 (build-system julia-build-system)
2233 `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
2235 `(("julia-crayons" ,julia-crayons)
2236 ("julia-imagebase" ,julia-imagebase)
2237 ("julia-imagecore" ,julia-imagecore)
2238 ("julia-requires" ,julia-requires)))
2240 ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations)
2241 ; ("julia-imagemagick" ,julia-imagemagick)
2242 ; ("julia-imagetransformations" ,julia-imagetransformations)
2243 ; ("julia-offsetarrays" ,julia-offsetarrays)
2244 ; ("julia-referencetests" ,julia-referencetests)
2245 ; ("julia-rotations" ,julia-rotations)
2246 ; ("julia-sparsearrays" ,julia-sparsearrays)
2247 ; ("julia-testimages" ,julia-testimages)))
2248 (home-page "https://github.com/JuliaImages/ImageInTerminal.jl")
2249 (synopsis "Julia package for displaying images in the terminal")
2250 (description "@code{ImageInTerminal.jl} is a drop-in package that once
2251 imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays
2252 (i.e. Images) are displayed in the interactive REPL. The displayed images will
2253 be downscaled to fit into the size of your active terminal session.")
2254 (license license:expat)))
2256 (define-public julia-imagemagick
2258 (name "julia-imagemagick")
2264 (url "https://github.com/JuliaIO/ImageMagick.jl")
2265 (commit (string-append "v" version))))
2266 (file-name (git-file-name name version))
2268 (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
2269 (build-system julia-build-system)
2272 (modify-phases %standard-phases
2273 (add-after 'link-depot 'skip-failing-test
2275 ;; These tests try to download from the imagemagick.org
2276 (substitute* "test/runtests.jl"
2277 ((".*readremote\\.jl.*") ""))
2278 ;; Tests with the color gray are hard.
2279 (substitute* "test/constructed_images.jl"
2280 (("test (b == aa)" _ test) (string-append "test_nowarn " test))
2281 (("test (B == map)" _ test) (string-append "test_nowarn " test)))
2284 `(("julia-fileio" ,julia-fileio)
2285 ("julia-imagecore" ,julia-imagecore)
2286 ("julia-imagemagick-jll" ,julia-imagemagick-jll)))
2288 `(("julia-colors" ,julia-colors)
2289 ("julia-colorvectorspace" ,julia-colorvectorspace)
2290 ("julia-imagemetadata" ,julia-imagemetadata)
2291 ("julia-imageshow" ,julia-imageshow)
2292 ("julia-imagetransformations" ,julia-imagetransformations)
2293 ("julia-indirectarrays" ,julia-indirectarrays)
2294 ("julia-offsetarrays" ,julia-offsetarrays)
2295 ("julia-zipfile" ,julia-zipfile)))
2296 (home-page "https://github.com/JuliaIO/ImageMagick.jl")
2297 (synopsis "Thin wrapper for ImageMagick")
2298 (description "This package provides a wrapper around ImageMagick version 6.
2299 It was split off from @code{Images.jl} to make image I/O more modular.")
2300 (license license:expat)))
2302 (define-public julia-imagemetadata
2304 (name "julia-imagemetadata")
2310 (url "https://github.com/JuliaImages/ImageMetadata.jl")
2311 (commit (string-append "v" version))))
2312 (file-name (git-file-name name version))
2314 (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1"))))
2315 (build-system julia-build-system)
2317 `(("julia-axisarrays" ,julia-axisarrays)
2318 ("julia-imageaxes" ,julia-imageaxes)
2319 ("julia-imagecore" ,julia-imagecore)
2320 ("julia-indirectarrays" ,julia-indirectarrays)))
2322 `(("julia-offsetarrays" ,julia-offsetarrays)
2323 ("julia-simpletraits" ,julia-simpletraits)
2324 ("julia-unitful" ,julia-unitful)))
2325 (home-page "https://github.com/JuliaImages/ImageMetadata.jl")
2326 (synopsis "Julia package for images having metadata")
2327 (description "@code{ImageMetadata} is a simple package providing utilities
2328 for working with images that have metadata attached. For example, you might
2329 want to associate an image with the date on which the picture was taken, or an
2330 MRI scan with patient data, or an astronomical image with sky coordinates and
2331 information about the detector used to acquire the image.")
2332 (license license:expat)))
2334 (define-public julia-imageshow
2336 (name "julia-imageshow")
2342 (url "https://github.com/JuliaImages/ImageShow.jl")
2343 (commit (string-append "v" version))))
2344 (file-name (git-file-name name version))
2346 (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
2347 (build-system julia-build-system)
2349 `(#:tests? #f)) ; cycle with ImageMagick.jl.
2351 `(("julia-fileio" ,julia-fileio)
2352 ("julia-imagebase" ,julia-imagebase)
2353 ("julia-imagecore" ,julia-imagecore)
2354 ("julia-offsetarrays" ,julia-offsetarrays)
2355 ("julia-stackviews" ,julia-stackviews)))
2357 ; `(("julia-imagedistances" ,julia-imagedistances)
2358 ; ("julia-imagemagick" ,julia-imagemagick)
2359 ; ("julia-suppressor" ,julia-suppressor)
2360 ; ("julia-testimages" ,julia-testimages)))
2361 (home-page "https://github.com/JuliaImages/ImageShow.jl")
2363 "Inline graphical display of images in Julia graphical environments")
2364 (description "This package implements image @code{show} methods suitable
2365 for graphical platforms such as IJulia. It is intended to provide convenient
2366 inline presentation of greyscale or color images.")
2367 (license license:expat)))
2369 (define-public julia-imagetransformations
2371 (name "julia-imagetransformations")
2377 (url "https://github.com/JuliaImages/ImageTransformations.jl")
2378 (commit (string-append "v" version))))
2379 (file-name (git-file-name name version))
2381 (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
2382 (build-system julia-build-system)
2384 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2386 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2387 ("julia-colorvectorspace" ,julia-colorvectorspace)
2388 ("julia-coordinatetransformations" ,julia-coordinatetransformations)
2389 ("julia-identityranges" ,julia-identityranges)
2390 ("julia-imagecore" ,julia-imagecore)
2391 ("julia-interpolations" ,julia-interpolations)
2392 ("julia-offsetarrays" ,julia-offsetarrays)
2393 ("julia-rotations" ,julia-rotations)
2394 ("julia-staticarrays" ,julia-staticarrays)))
2396 ; `(("julia-imagemagick" ,julia-imagemagick)
2397 ; ("julia-referencetests" ,julia-referencetests)
2398 ; ("julia-testimages" ,julia-testimages)))
2399 (home-page "https://github.com/JuliaImages/ImageTransformations.jl")
2400 (synopsis "Geometric transformations on images for Julia")
2401 (description "This package provides support for image resizing, image
2402 rotation, and other spatial transformations of arrays.")
2403 (license license:expat)))
2405 (define-public julia-indexing
2407 (name "julia-indexing")
2413 (url "https://github.com/andyferris/Indexing.jl")
2414 (commit (string-append "v" version))))
2415 (file-name (git-file-name name version))
2417 (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx"))))
2418 (build-system julia-build-system)
2419 (home-page "https://github.com/andyferris/Indexing.jl")
2420 (synopsis "Generalized indexing for Julia")
2421 (description "This package defines functions for getting multiple indices
2422 out of dictionaries, tuples, etc, extending this ability beyond
2423 @code{AbstractArray}.")
2424 (license license:expat)))
2426 (define-public julia-indirectarrays
2428 (name "julia-indirectarrays")
2434 (url "https://github.com/JuliaArrays/IndirectArrays.jl")
2435 (commit (string-append "v" version))))
2436 (file-name (git-file-name name version))
2438 (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s"))))
2439 (build-system julia-build-system)
2441 `(("julia-colors" ,julia-colors)
2442 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2443 ("julia-mappedarrays" ,julia-mappedarrays)))
2444 (home-page "https://github.com/JuliaArrays/IndirectArrays.jl")
2445 (synopsis "Julia implementation of indexed arrays")
2446 (description "An @code{IndirectArray} is one that encodes data using a
2447 combination of an @code{index} and a @code{value} table. Each element is
2448 assigned its own index, which is used to retrieve the value from the
2449 @code{value} table. Among other uses, @code{IndirectArrays} can represent
2450 indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
2451 (license license:expat)))
2453 (define-public julia-infinity
2455 (name "julia-infinity")
2461 (url "https://github.com/cjdoris/Infinity.jl")
2462 (commit (string-append "v" version))))
2463 (file-name (git-file-name name version))
2465 (base32 "1941lwvrdjnrynigzixxin3chpg1ba6xplvcwc89x0f6z658hwmm"))))
2466 (build-system julia-build-system)
2469 (modify-phases %standard-phases
2470 (add-after 'link-depot 'remove-timezones.jl
2472 (substitute* "test/runtests.jl"
2473 (("using TimeZones.*") "")
2474 ((".*infextendedtime.*") ""))
2477 `(("julia-requires" ,julia-requires)))
2479 `(("julia-compat" ,julia-compat)))
2480 (home-page "https://docs.juliahub.com/Infinity/")
2481 (synopsis "Representation of infinity in Julia")
2482 (description "This package provides representations for infinity and
2483 negative infinity in Julia.")
2484 (license license:expat)))
2486 (define-public julia-inifile
2488 (name "julia-inifile")
2494 (url "https://github.com/JuliaIO/IniFile.jl")
2495 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
2496 (file-name (git-file-name name version))
2498 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
2499 (build-system julia-build-system)
2500 (home-page "https://github.com/JuliaIO/IniFile.jl")
2501 (synopsis "Reading Windows-style INI files")
2502 (description "This is a Julia package that defines an IniFile type that
2503 interfaces with @file{.ini} files.")
2504 (license license:expat)))
2506 (define-public julia-interpolations
2508 (name "julia-interpolations")
2514 (url "https://github.com/JuliaMath/Interpolations.jl")
2515 (commit (string-append "v" version))))
2516 (file-name (git-file-name name version))
2518 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
2519 (build-system julia-build-system)
2521 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2522 ("julia-offsetarrays" ,julia-offsetarrays)
2523 ("julia-ratios" ,julia-ratios)
2524 ("julia-requires" ,julia-requires)
2525 ("julia-staticarrays" ,julia-staticarrays)
2526 ("julia-woodburymatrices" ,julia-woodburymatrices)))
2528 `(("julia-dualnumbers" ,julia-dualnumbers)
2529 ("julia-forwarddiff" ,julia-forwarddiff)
2530 ("julia-offsetarrays" ,julia-offsetarrays)
2531 ("julia-unitful" ,julia-unitful)
2532 ("julia-zygote" ,julia-zygote)))
2533 (home-page "https://github.com/JuliaMath/Interpolations.jl")
2534 (synopsis "Continuous interpolation of discrete datasets")
2535 (description "This package implements a variety of interpolation schemes for
2536 the Julia language. It has the goals of ease-of-use, broad algorithmic support,
2537 and exceptional performance.")
2538 (license license:expat)))
2540 (define-public julia-intervalsets
2542 (name "julia-intervalsets")
2548 (url "https://github.com/JuliaMath/IntervalSets.jl")
2549 (commit (string-append "v" version))))
2550 (file-name (git-file-name name version))
2552 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
2553 (build-system julia-build-system)
2555 `(("julia-ellipsisnotation" ,julia-ellipsisnotation)))
2557 `(("julia-offsetarrays" ,julia-offsetarrays)))
2558 (home-page "https://github.com/JuliaMath/IntervalSets.jl")
2559 (synopsis "Interval Sets for Julia")
2560 (description "This package is intended to implement a \"minimal\" foundation
2561 for intervals upon which other packages might build. In particular, we
2562 encourage type-piracy for the reason that only one interval package can
2563 unambiguously define the @code{..} and @code{±} operators.")
2564 (license license:expat)))
2566 (define-public julia-invertedindices
2568 (name "julia-invertedindices")
2574 (url "https://github.com/mbauman/InvertedIndices.jl")
2575 (commit (string-append "v" version))))
2576 (file-name (git-file-name name version))
2578 (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46"))))
2579 (build-system julia-build-system)
2581 `(("julia-offsetarrays" ,julia-offsetarrays)))
2582 (home-page "https://github.com/mbauman/InvertedIndices.jl")
2583 (synopsis "Index type that allows for inverted selections")
2584 (description "This package just exports one type: the @code{InvertedIndex},
2585 or @code{Not} for short. It can wrap any supported index type and may be used
2586 as an index into any @code{AbstractArray} subtype, including OffsetArrays.")
2587 (license license:expat)))
2589 (define-public julia-iocapture
2591 (name "julia-iocapture")
2597 (url "https://github.com/JuliaDocs/IOCapture.jl")
2598 (commit (string-append "v" version))))
2599 (file-name (git-file-name name version))
2601 (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb"))))
2602 (build-system julia-build-system)
2603 (home-page "https://github.com/JuliaDocs/IOCapture.jl")
2604 (synopsis "Capture standard output and error streams")
2605 (description "This package provides the @code{IOCapture.capture(f)}
2606 function, which captures the standard output and standard error, and returns it
2607 as a string together with the return value.")
2608 (license license:expat)))
2610 (define-public julia-irtools
2612 (name "julia-irtools")
2618 (url "https://github.com/FluxML/IRTools.jl")
2619 (commit (string-append "v" version))))
2620 (file-name (git-file-name name version))
2622 (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql"))))
2623 (build-system julia-build-system)
2625 `(("julia-macrotools" ,julia-macrotools)))
2627 `(("julia-documenter" ,julia-documenter)))
2628 (home-page "https://github.com/FluxML/IRTools.jl")
2629 (synopsis "Simple and flexible IR format")
2630 (description "This package provides a simple and flexible IR format,
2631 expressive enough to work with both lowered and typed Julia code, as well as
2632 external IRs. It can be used with Julia metaprogramming tools such as
2634 (license license:expat)))
2636 (define-public julia-iteratorinterfaceextensions
2638 (name "julia-iteratorinterfaceextensions")
2644 (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2645 (commit (string-append "v" version))))
2646 (file-name (git-file-name name version))
2648 (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"))))
2649 (build-system julia-build-system)
2650 (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2651 (synopsis "Traits for Julia iterators")
2652 (description "IteratorInterfaceExtensions defines a small number of
2653 extensions to the iterator interface.")
2654 (license license:expat)))
2656 (define-public julia-itertools
2658 (name "julia-itertools")
2664 (url "https://github.com/JuliaCollections/IterTools.jl")
2665 (commit (string-append "v" version))))
2666 (file-name (git-file-name name version))
2668 (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq"))))
2669 (build-system julia-build-system)
2670 (home-page "https://github.com/JuliaCollections/IterTools.jl")
2671 (synopsis "Common functional iterator patterns")
2673 "Common functional iterator patterns (formerly @code{Iterators.jl}).")
2674 (license license:expat)))
2676 (define-public julia-jive
2684 (url "https://github.com/wookay/Jive.jl")
2685 (commit (string-append "v" version))))
2686 (file-name (git-file-name name version))
2688 (base32 "0khwsdh8472jxcfi9lqw14l49sqlbsixql1jb4irnyajxkdjrcsf"))))
2689 (build-system julia-build-system)
2690 (home-page "https://github.com/wookay/Jive.jl")
2691 (synopsis "Julia package to help with writing tests")
2692 (description "@code{Jive.jl} is a Julia package to help with writing tests.")
2693 (license license:expat)))
2695 (define-public julia-json
2703 (url "https://github.com/JuliaIO/JSON.jl")
2704 (commit (string-append "v" version))))
2705 (file-name (git-file-name name version))
2707 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
2708 (build-system julia-build-system)
2710 `(("julia-datastructures" ,julia-datastructures)
2711 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2712 ("julia-parsers" ,julia-parsers)
2713 ("julia-offsetarrays" ,julia-offsetarrays)))
2714 (home-page "https://github.com/JuliaIO/JSON.jl")
2715 (synopsis "JSON parsing and printing library for Julia")
2716 (description "@code{JSON.jl} is a pure Julia module which supports parsing
2717 and printing JSON documents.")
2718 (license license:expat)))
2720 (define-public julia-json3
2722 (name "julia-json3")
2728 (url "https://github.com/quinnj/JSON3.jl")
2729 (commit (string-append "v" version))))
2730 (file-name (git-file-name name version))
2732 (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17"))))
2733 (build-system julia-build-system)
2735 `(("julia-parsers" ,julia-parsers)
2736 ("julia-structtypes" ,julia-structtypes)))
2737 (home-page "https://github.com/quinnj/JSON3.jl")
2738 (synopsis "JSON package for Julia")
2739 (description "This package provides another JSON package for Julia, with a
2740 focus on speed and slick struct mapping.")
2741 (license license:expat)))
2743 (define-public julia-latexstrings
2745 (name "julia-latexstrings")
2751 (url "https://github.com/stevengj/LaTeXStrings.jl")
2752 (commit (string-append "v" version))))
2753 (file-name (git-file-name name version))
2755 (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp"))))
2756 (build-system julia-build-system)
2758 `(("julia-documenter" ,julia-documenter)))
2759 (home-page "https://github.com/stevengj/LaTeXStrings.jl")
2760 (synopsis "Input and display of LaTeX equation strings")
2761 (description "This is a small package to make it easier to type LaTeX
2762 equations in string literals in the Julia language.")
2763 (license license:expat)))
2765 (define-public julia-lazyarrays
2767 (name "julia-lazyarrays")
2773 (url "https://github.com/JuliaArrays/LazyArrays.jl")
2774 (commit (string-append "v" version))))
2775 (file-name (git-file-name name version))
2777 (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5"))))
2778 (build-system julia-build-system)
2780 `(("julia-arraylayouts" ,julia-arraylayouts)
2781 ("julia-fillarrays" ,julia-fillarrays)
2782 ("julia-macrotools" ,julia-macrotools)
2783 ("julia-matrixfactorizations" ,julia-matrixfactorizations)
2784 ("julia-staticarrays" ,julia-staticarrays)))
2786 `(("julia-tracker" ,julia-tracker)))
2787 (home-page "https://github.com/JuliaArrays/LazyArrays.jl")
2788 (synopsis "Lazy arrays and linear algebra")
2789 (description "This package supports lazy analogues of array operations like
2790 @code{vcat}, @code{hcat}, and multiplication. This helps with the
2791 implementation of matrix-free methods for iterative solvers.")
2792 (license license:expat)))
2794 (define-public julia-logexpfunctions
2796 (name "julia-logexpfunctions")
2802 (url "https://github.com/JuliaStats/LogExpFunctions.jl")
2803 (commit (string-append "v" version))))
2804 (file-name (git-file-name name version))
2806 (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n"))))
2807 (build-system julia-build-system)
2809 `(("julia-docstringextensions" ,julia-docstringextensions)))
2811 `(("julia-offsetarrays" ,julia-offsetarrays)))
2812 (home-page "https://github.com/JuliaStats/LogExpFunctions.jl")
2813 (synopsis "Special functions based on @code{log} and @code{exp}")
2814 (description "Various special functions based on log and exp moved from
2815 @code{StatsFuns.jl} into a separate package, to minimize dependencies. These
2816 functions only use native Julia code, so there is no need to depend on
2817 @code{librmath} or similar libraries.")
2818 (license license:expat)))
2820 (define-public julia-macrotools
2822 (name "julia-macrotools")
2828 (url "https://github.com/FluxML/MacroTools.jl")
2829 (commit (string-append "v" version))))
2830 (file-name (git-file-name name version))
2832 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
2833 (build-system julia-build-system)
2834 (home-page "https://fluxml.ai/MacroTools.jl")
2835 (synopsis "Tools for working with Julia code and expressions")
2836 (description "This library provides tools for working with Julia code and
2837 expressions. This includes a template-matching system and code-walking tools
2838 that let you do deep transformations of code.")
2839 (license license:expat)))
2841 (define-public julia-mappedarrays
2843 (name "julia-mappedarrays")
2849 (url "https://github.com/JuliaArrays/MappedArrays.jl")
2850 (commit (string-append "v" version))))
2851 (file-name (git-file-name name version))
2853 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
2854 (build-system julia-build-system)
2856 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
2858 `(("julia-colortypes" ,julia-colortypes)
2859 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2860 ("julia-offsetarrays" ,julia-offsetarrays)))
2861 (home-page "https://github.com/JuliaArrays/MappedArrays.jl")
2862 (synopsis "Lazy in-place transformations of arrays")
2863 (description "This package implements \"lazy\" in-place elementwise
2864 transformations of arrays for the Julia programming language. Explicitly, it
2865 provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a
2866 specified (but arbitrary) function f, without ever having to compute M
2867 explicitly (in the sense of allocating storage for M). The name of the package
2868 comes from the fact that @code{M == map(f, A)}.")
2869 (license license:expat)))
2871 (define-public julia-matrixfactorizations
2873 (name "julia-matrixfactorizations")
2879 (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2880 (commit (string-append "v" version))))
2881 (file-name (git-file-name name version))
2883 (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb"))))
2884 (build-system julia-build-system)
2887 (modify-phases %standard-phases
2888 (add-after 'link-depot 'skip-failing-test
2890 ;; Tests with math functions are hard.
2891 (substitute* "test/test_ul.jl"
2892 (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
2893 ;; Also skip the REPL test.
2894 (("test String") "test_nowarn String"))
2897 `(("julia-arraylayouts" ,julia-arraylayouts)))
2898 (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2899 (synopsis "Julia package to contain non-standard matrix factorizations")
2900 (description "A Julia package to contain non-standard matrix factorizations.
2901 At the moment it implements the QL, RQ, and UL factorizations, a combined
2902 Cholesky factorization with inverse, and polar decompositions. In the future it
2903 may include other factorizations such as the LQ factorization.")
2904 (license license:expat)))
2906 (define-public julia-mbedtls
2908 (name "julia-mbedtls")
2914 (url "https://github.com/JuliaLang/MbedTLS.jl")
2915 (commit (string-append "v" version))))
2916 (file-name (git-file-name name version))
2918 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
2919 (build-system julia-build-system)
2922 (modify-phases %standard-phases
2923 (add-before 'install 'disable-network-tests
2924 ;; Tries to connect to httpbin.org
2926 (substitute* "test/runtests.jl"
2927 (("testhost =") "return #"))
2929 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
2930 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
2931 (synopsis "Apache's mbed TLS library wrapper")
2932 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
2933 TLS} and cryptography C library for Julia.")
2934 (license license:expat)))
2936 (define-public julia-measurements
2938 (name "julia-measurements")
2944 (url "https://github.com/JuliaPhysics/Measurements.jl")
2945 (commit (string-append "v" version))))
2946 (file-name (git-file-name name version))
2948 (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
2949 (build-system julia-build-system)
2951 `(("julia-calculus" ,julia-calculus)
2952 ("julia-recipesbase" ,julia-recipesbase)
2953 ("julia-requires" ,julia-requires)))
2955 `(("julia-quadgk" ,julia-quadgk)
2956 ("julia-specialfunctions" ,julia-specialfunctions)
2957 ("julia-unitful" ,julia-unitful)))
2958 (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
2959 (synopsis "Error propagation calculator and library")
2960 (description "@code{Measurements.jl} is an error propagation calculator and
2961 library for physical measurements. It supports real and complex numbers with
2962 uncertainty, arbitrary precision calculations, operations with arrays, and
2963 numerical integration. The linear error propagation theory is employed to
2964 propagate the errors.")
2965 (license license:expat)))
2967 (define-public julia-measures
2969 (name "julia-measures")
2975 (url "https://github.com/JuliaGraphics/Measures.jl")
2976 (commit (string-append "v" version))))
2977 (file-name (git-file-name name version))
2979 (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l"))))
2980 (build-system julia-build-system)
2981 (home-page "https://github.com/JuliaGraphics/Measures.jl")
2982 (synopsis "Unified measure and coordinates types")
2983 (description "This library generalizes and unifies the notion of measures
2984 used in Compose, Compose3D, and Escher. It allows building up and representing
2985 expressions involving differing types of units that are then evaluated,
2986 resolving them into absolute units.")
2987 (license license:expat)))
2989 (define-public julia-media
2991 (name "julia-media")
2997 (url "https://github.com/JunoLab/Media.jl")
2998 (commit (string-append "v" version))))
2999 (file-name (git-file-name name version))
3001 (base32 "05jq9j3vs8yfj2lwz3sh1vk5rha06xdcikp9s2q3dn316vryy6di"))))
3002 (build-system julia-build-system)
3003 ;; Package without Project.toml
3005 '(#:julia-package-name "Media"
3006 #:julia-package-uuid "e89f7d12-3494-54d1-8411-f7d8b9ae1f27"))
3008 `(("julia-macrotools" ,julia-macrotools)))
3009 (home-page "https://github.com/JunoLab/Media.jl")
3010 (synopsis "Unified measure and coordinates types")
3011 (description "This package provides a display system which enables the
3012 user handle multiple input/output devices and decide what media types get
3014 (license license:expat)))
3016 (define-public julia-missings
3018 (name "julia-missings")
3024 (url "https://github.com/JuliaData/Missings.jl")
3025 (commit (string-append "v" version))))
3026 (file-name (git-file-name name version))
3028 (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5"))))
3029 (build-system julia-build-system)
3031 `(("julia-dataapi" ,julia-dataapi)))
3032 (home-page "https://github.com/JuliaData/Missings.jl")
3033 (synopsis "Additional missing value support for Julia")
3034 (description "This package provides additional functionality for working
3035 with @code{missing} values in Julia.")
3036 (license license:expat)))
3038 (define-public julia-mlstyle
3040 (name "julia-mlstyle")
3046 (url "https://github.com/thautwarm/MLStyle.jl")
3047 (commit (string-append "v" version))))
3048 (file-name (git-file-name name version))
3050 (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
3051 (build-system julia-build-system)
3053 `(("julia-datastructures" ,julia-datastructures)))
3054 (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
3055 (synopsis "Julia functional programming infrastructures")
3056 (description "This package provides consistent and extensible functional
3057 programming infrastructures, and metaprogramming facilities.")
3058 (license license:expat)))
3060 (define-public julia-mocking
3062 (name "julia-mocking")
3068 (url "https://github.com/invenia/Mocking.jl")
3069 (commit (string-append "v" version))))
3070 (file-name (git-file-name name version))
3072 (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg"))))
3073 (build-system julia-build-system)
3075 `(("julia-compat" ,julia-compat)
3076 ("julia-exprtools" ,julia-exprtools)))
3077 (home-page "https://github.com/invenia/Mocking.jl")
3078 (synopsis "Overload Julia function calls")
3079 (description "The purpose of this package is to allow Julia function calls
3080 to be temporarily overloaded for the purpose of testing.")
3081 (license license:expat)))
3083 (define-public julia-mosaicviews
3085 (name "julia-mosaicviews")
3091 (url "https://github.com/JuliaArrays/MosaicViews.jl")
3092 (commit (string-append "v" version))))
3093 (file-name (git-file-name name version))
3095 (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
3096 (build-system julia-build-system)
3098 `(#:tests? #f)) ; Cycle with ImageCore.jl
3100 `(("julia-mappedarrays" ,julia-mappedarrays)
3101 ("julia-paddedviews" ,julia-paddedviews)
3102 ("julia-stackviews" ,julia-stackviews)))
3104 ; `(("julia-colorvectorspace" ,julia-colorvectorspace)
3105 ; ("julia-imagecore" ,julia-imagecore)))
3106 (home-page "https://github.com/JuliaArrays/MosaicViews.jl")
3108 "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices")
3109 (description "When visualizing images, it is not uncommon to provide a 2D
3110 view of different image sources. For example, comparing multiple images of
3111 different sizes, getting a preview of machine learning dataset. This package
3112 aims to provide easy-to-use tools for such tasks.")
3113 (license license:expat)))
3115 (define-public julia-msgpack
3117 (name "julia-msgpack")
3123 (url "https://github.com/JuliaIO/MsgPack.jl")
3124 (commit (string-append "v" version))))
3125 (file-name (git-file-name name version))
3127 (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
3128 (build-system julia-build-system)
3129 (home-page "https://github.com/JuliaIO/MsgPack.jl")
3130 (synopsis "Julia MsgPack implementation")
3131 (description "@code{MsgPack.jl} is a MessagePack implementation in pure
3132 Julia, with type-driven, overloadable packing/unpacking functionality.")
3133 (license license:expat)))
3135 (define-public julia-mutablearithmetics
3137 (name "julia-mutablearithmetics")
3143 (url "https://github.com/jump-dev/MutableArithmetics.jl")
3144 (commit (string-append "v" version))))
3145 (file-name (git-file-name name version))
3147 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f"))))
3148 (build-system julia-build-system)
3150 `(("julia-offsetarrays" ,julia-offsetarrays)))
3151 (home-page "https://github.com/jump-dev/MutableArithmetics.jl")
3152 (synopsis "Interface for arithmetics on mutable types in Julia")
3153 (description "MutableArithmetics is a Julia package which allows:
3155 @item mutable types to implement mutable arithmetics
3156 @item algorithms that could exploit mutable arithmetics to exploit them while
3157 still being completely generic
3159 (license license:mpl2.0)))
3161 (define-public julia-nanmath
3163 (name "julia-nanmath")
3169 (url "https://github.com/mlubin/NaNMath.jl")
3170 (commit (string-append "v" version))))
3171 (file-name (git-file-name name version))
3173 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
3174 (build-system julia-build-system)
3175 (home-page "https://github.com/mlubin/NaNMath.jl")
3176 (synopsis "Implementations of basic math functions")
3177 (description "Implementations of basic math functions which return
3178 @code{NaN} instead of throwing a @code{DomainError}.")
3179 (license license:expat)))
3181 (define-public julia-nlsolversbase
3183 (name "julia-nlsolversbase")
3189 (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
3190 (commit (string-append "v" version))))
3191 (file-name (git-file-name name version))
3193 (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98"))))
3194 (build-system julia-build-system)
3196 `(("julia-diffresults" ,julia-diffresults)
3197 ("julia-finitediff" ,julia-finitediff)
3198 ("julia-forwarddiff" ,julia-forwarddiff)))
3200 `(("julia-optimtestproblems" ,julia-optimtestproblems)
3201 ("julia-recursivearraytools" ,julia-recursivearraytools)))
3202 (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
3203 (synopsis "Optimization and equation solver software in JuliaNLSolvers")
3204 (description "This package aims at establishing common ground for Optim.jl,
3205 LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to
3206 hold objective related callables, information about the objectives, and an
3207 interface to interact with these types.")
3208 (license license:expat)))
3210 (define-public julia-nnlib
3212 (name "julia-nnlib")
3218 (url "https://github.com/FluxML/NNlib.jl")
3219 (commit (string-append "v" version))))
3220 (file-name (git-file-name name version))
3222 (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
3223 (build-system julia-build-system)
3226 (modify-phases %standard-phases
3227 (add-after 'link-depot 'skip-cuda-tests
3229 (substitute* "test/runtests.jl"
3231 (("&& CUDA\\.functional\\(\\)") ""))
3232 (setenv "NNLIB_TEST_CUDA" "false"))))))
3234 `(("julia-adapt" ,julia-adapt)
3235 ("julia-chainrulescore" ,julia-chainrulescore)
3236 ("julia-requires" ,julia-requires)))
3238 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
3239 ("julia-stablerngs" ,julia-stablerngs)
3240 ("julia-zygote" ,julia-zygote)))
3241 (home-page "https://github.com/FluxML/NNlib.jl")
3242 (synopsis "Neural Network primitives with multiple backends")
3243 (description "This package will provide a library of functions useful for
3244 machine learning, such as softmax, sigmoid, convolutions and pooling. It
3245 doesn't provide any other \"high-level\" functionality like layers or AD.")
3246 (license license:expat)))
3248 (define-public julia-optimtestproblems
3250 (name "julia-optimtestproblems")
3256 (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
3257 (commit (string-append "v" version))))
3258 (file-name (git-file-name name version))
3260 (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
3261 (build-system julia-build-system)
3263 `(#:julia-package-name "OptimTestProblems"
3264 #:julia-package-uuid "cec144fc-5a64-5bc6-99fb-dde8f63e154c"))
3265 (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
3266 (synopsis "Collection of optimization test problems")
3267 (description "The purpose of this package is to provide test problems for
3268 JuliaNLSolvers packages.")
3269 (license license:expat)))
3271 (define-public julia-orderedcollections
3273 (name "julia-orderedcollections")
3279 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
3280 (commit (string-append "v" version))))
3281 (file-name (git-file-name name version))
3283 (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
3284 (build-system julia-build-system)
3285 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
3286 (synopsis "Associative containers that preserve insertion order")
3287 (description "This package implements @code{OrderedDicts} and
3288 @code{OrderedSets}, which are similar to containers in base Julia. However,
3289 during iteration the @code{Ordered*} containers return items in the order in
3290 which they were added to the collection.")
3291 (license license:expat)))
3293 (define-public julia-offsetarrays
3295 (name "julia-offsetarrays")
3301 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
3302 (commit (string-append "v" version))))
3303 (file-name (git-file-name name version))
3305 (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc"))))
3306 (build-system julia-build-system)
3308 `(("julia-adapt" ,julia-adapt)))
3309 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
3310 (arguments '(#:tests? #f))
3311 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
3312 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
3313 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
3314 have arbitrary indices, similar to those found in some other programming
3315 languages like Fortran.")
3316 (license license:expat)))
3318 (define-public julia-paddedviews
3320 (name "julia-paddedviews")
3326 (url "https://github.com/JuliaArrays/PaddedViews.jl")
3327 (commit (string-append "v" version))))
3328 (file-name (git-file-name name version))
3330 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h"))))
3331 (build-system julia-build-system)
3333 `(("julia-offsetarrays" ,julia-offsetarrays)))
3335 `(("julia-documenter" ,julia-documenter)))
3336 (home-page "https://github.com/JuliaArrays/PaddedViews.jl")
3337 (synopsis "Add virtual padding to the edges of an array")
3338 (description "@code{PaddedViews} provides a simple wrapper type,
3339 @code{PaddedView}, to add \"virtual\" padding to any array without copying data.
3340 Edge values not specified by the array are assigned a @code{fillvalue}.
3341 Multiple arrays may be \"promoted\" to have common indices using the
3342 @code{paddedviews} function.")
3343 (license license:expat)))
3345 (define-public julia-parameters
3347 (name "julia-parameters")
3353 (url "https://github.com/mauro3/Parameters.jl")
3354 (commit (string-append "v" version))))
3355 (file-name (git-file-name name version))
3357 (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
3358 (build-system julia-build-system)
3360 `(("julia-orderedcollections" ,julia-orderedcollections)
3361 ("julia-unpack" ,julia-unpack)))
3362 (home-page "https://github.com/mauro3/Parameters.jl")
3363 (synopsis "Numerical-model parameter helpers")
3364 (description "This package contains types with default field values, keyword
3365 constructors and (un-)pack macros. Keyword functions can be slow in Julia,
3366 however, the normal positional constructor is also provided and could be used in
3367 performance critical code.")
3368 (license license:expat)))
3370 (define-public julia-parsers
3372 (name "julia-parsers")
3378 (url "https://github.com/JuliaData/Parsers.jl")
3379 (commit (string-append "v" version))))
3380 (file-name (git-file-name name version))
3382 (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
3383 (build-system julia-build-system)
3384 (home-page "https://github.com/JuliaData/Parsers.jl")
3385 (synopsis "Fast parsing machinery for basic types in Julia")
3386 (description "@code{Parsers.jl} is a collection of type parsers and
3387 utilities for Julia.")
3388 (license license:expat)))
3390 (define-public julia-pdmats
3392 (name "julia-pdmats")
3398 (url "https://github.com/JuliaStats/PDMats.jl")
3399 (commit (string-append "v" version))))
3400 (file-name (git-file-name name version))
3402 (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0"))))
3403 (build-system julia-build-system)
3404 (home-page "https://github.com/JuliaStats/PDMats.jl")
3406 "Uniform Interface for positive definite matrices of various structures")
3407 (description "PDMats.jl supports efficient computation on positive definite
3408 matrices of various structures. In particular, it provides uniform interfaces
3409 to use positive definite matrices of various structures for writing generic
3410 algorithms, while ensuring that the most efficient implementation is used in
3411 actual computation.")
3412 (license license:expat)))
3414 (define-public julia-plotthemes
3416 (name "julia-plotthemes")
3422 (url "https://github.com/JuliaPlots/PlotThemes.jl")
3423 (commit (string-append "v" version))))
3424 (file-name (git-file-name name version))
3426 (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh"))))
3427 (build-system julia-build-system)
3429 `(("julia-plotutils" ,julia-plotutils)
3430 ("julia-requires" ,julia-requires)))
3431 (home-page "https://github.com/JuliaPlots/PlotThemes.jl")
3432 (synopsis "Themes for the Julia plotting package Plots.jl")
3434 "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.")
3435 (license license:expat)))
3437 (define-public julia-plotutils
3439 (name "julia-plotutils")
3445 (url "https://github.com/JuliaPlots/PlotUtils.jl")
3446 (commit (string-append "v" version))))
3447 (file-name (git-file-name name version))
3449 (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105"))))
3450 (build-system julia-build-system)
3452 `(("julia-colors" ,julia-colors)
3453 ("julia-colorschemes" ,julia-colorschemes)
3454 ("julia-reexport" ,julia-reexport)))
3456 `(("julia-stablerngs" ,julia-stablerngs)))
3457 (home-page "https://github.com/JuliaPlots/PlotUtils.jl")
3458 (synopsis "Helper algorithms for building plotting components")
3459 (description "This package contains generic helper algorithms for building
3460 plotting components.")
3461 (license license:expat)))
3463 (define-public julia-pooledarrays
3465 (name "julia-pooledarrays")
3471 (url "https://github.com/JuliaData/PooledArrays.jl")
3472 (commit (string-append "v" version))))
3473 (file-name (git-file-name name version))
3475 (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr"))))
3476 (build-system julia-build-system)
3478 `(("julia-dataapi" ,julia-dataapi)))
3479 (home-page "https://github.com/JuliaData/PooledArrays.jl")
3480 (synopsis "Pooled representation of arrays in Julia")
3481 (description "This package provides a pooled representation of arrays for
3482 purposes of compression when there are few unique elements.")
3483 (license license:expat)))
3485 (define-public julia-positivefactorizations
3487 (name "julia-positivefactorizations")
3493 (url "https://github.com/timholy/PositiveFactorizations.jl")
3494 (commit (string-append "v" version))))
3495 (file-name (git-file-name name version))
3497 (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23"))))
3498 (build-system julia-build-system)
3500 `(("julia-forwarddiff" ,julia-forwarddiff)
3501 ("julia-reversediff" ,julia-reversediff)))
3502 (home-page "https://github.com/timholy/PositiveFactorizations.jl")
3503 (synopsis "Positive-definite \"approximations\" to matrices")
3504 (description "@code{PositiveFactorizations} is a package for computing a
3505 positive definite matrix decomposition (factorization) from an arbitrary
3506 symmetric input. The motivating application is optimization (Newton or
3507 quasi-Newton methods), in which the canonical search direction -H/g (H being the
3508 Hessian and g the gradient) may not be a descent direction if H is not positive
3510 (license license:expat)))
3512 (define-public julia-preferences
3514 (name "julia-preferences")
3520 (url "https://github.com/JuliaPackaging/Preferences.jl")
3521 (commit (string-append "v" version))))
3522 (file-name (git-file-name name version))
3524 (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
3525 (build-system julia-build-system)
3527 `(#:tests? #f)) ; Tests try to mkdir /.julia
3528 (home-page "https://github.com/JuliaPackaging/Preferences.jl")
3529 (synopsis "Store configuration switches to TOML files")
3530 (description "The @code{Preferences} package provides an integrated way for
3531 packages to store configuration switches to persistent TOML files, and use those
3532 pieces of information at both run time and compile time in Julia. This enables
3533 the user to modify the behavior of a package, and have that choice reflected in
3534 everything from run time algorithm choice to code generation at compile time.")
3535 (license license:expat)))
3537 (define-public julia-prettytables
3539 (name "julia-prettytables")
3545 (url "https://github.com/ronisbr/PrettyTables.jl")
3546 (commit (string-append "v" version))))
3547 (file-name (git-file-name name version))
3549 (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
3550 (build-system julia-build-system)
3553 (modify-phases %standard-phases
3554 (add-after 'link-depot 'skip-color-tests
3556 (substitute* "test/text_backend.jl"
3557 ((".*colors\\.jl.*") ""))
3560 `(("julia-crayons" ,julia-crayons)
3561 ("julia-formatting" ,julia-formatting)
3562 ("julia-reexport" ,julia-reexport)
3563 ("julia-tables" ,julia-tables)))
3564 (home-page "https://github.com/ronisbr/PrettyTables.jl")
3565 (synopsis "Print data in formatted tables")
3566 (description "This package has the purpose to print data in matrices in a
3567 human-readable format.")
3568 (license license:expat)))
3570 (define-public julia-pycall
3572 (name "julia-pycall")
3578 (url "https://github.com/JuliaPy/PyCall.jl")
3579 (commit (string-append "v" version))))
3580 (file-name (git-file-name name version))
3583 "1fj5d1ihnhnm0pl4hbx6hcd2bpdyhm8jiaqah2axsbd069j70saf"))))
3584 (build-system julia-build-system)
3586 `(#:imported-modules ((guix build python-build-system)
3587 ,@%julia-build-system-modules)
3588 #:modules ((guix build julia-build-system)
3590 ((guix build python-build-system) #:prefix python:))
3592 (modify-phases %standard-phases
3593 (add-after 'link-depot 'remove-conda
3595 (substitute* "Project.toml"
3597 (substitute* (list "src/PyCall.jl"
3599 (("import Conda") ""))
3600 (substitute* "deps/depsutils.jl"
3601 (("Conda.PYTHONDIR") "\"/\""))
3603 (add-after 'link-depot 'set-python
3604 (lambda* (#:key inputs outputs #:allow-other-keys)
3605 (let ((python (assoc-ref inputs "python")))
3606 (setenv "PYCALL_JL_RUNTIME_PYTHON"
3607 (string-append python "/bin/python3"))
3608 (with-output-to-file "deps/deps.jl"
3611 "const python = \"~a/bin/python3\"~@
3612 const pyprogramname = \"~a/bin/python3\"~@
3613 const libpython = \"~a/lib/libpython~a.so.1.0\"~@
3614 const PYTHONHOME = \"~a\"~@
3615 const pyversion_build = v\"~a\"~@
3616 const conda = false~%"
3620 (python:python-version python)
3622 ,(package-version python))))
3624 (add-before 'check 'pre-check
3626 (setenv "CI" "true")
3627 (setenv "JULIA_PKGEVAL" "true")
3630 `(("julia-macrotools" ,julia-macrotools)
3631 ("julia-versionparsing" ,julia-versionparsing)))
3633 `(("python" ,python)))
3635 `(("python-numpy" ,python-numpy)))
3636 (home-page "https://github.com/JuliaPy/PyCall.jl")
3637 (synopsis "Call Python functions from the Julia language")
3638 (description "This package provides the ability to directly call and fully
3639 interoperate with Python from the Julia language. You can import arbitrary
3640 Python modules from Julia, call Python functions (with automatic conversion of
3641 types between Julia and Python), define Python classes from Julia methods, and
3642 share large data structures between Julia and Python without copying them.")
3643 (license license:expat)))
3645 (define-public julia-pyplot
3647 (name "julia-pyplot")
3653 (url "https://github.com/JuliaPy/PyPlot.jl")
3654 (commit (string-append "v" version))))
3655 (file-name (git-file-name name version))
3657 (base32 "007zs0imfgs69f30pp2a3rc93kl0qiq7qjx6ig35z4wzkmps4skd"))))
3658 (build-system julia-build-system)
3660 `(("julia-colors" ,julia-colors)
3661 ("julia-latexstrings" ,julia-latexstrings)
3662 ("julia-pycall" ,julia-pycall)
3663 ("julia-versionparsing" ,julia-versionparsing)
3664 ;; python-matplotlib is expected to be available at runtime.
3665 ("python-matplotlib" ,python-matplotlib)))
3666 (home-page "https://github.com/JuliaPy/PyPlot.jl")
3667 (synopsis "Plotting for Julia based on matplotlib.pyplot")
3668 (description "This package provides a Julia interface to the Matplotlib
3669 plotting library from Python, and specifically to the @code{matplotlib.pyplot}
3670 module. PyPlot uses the Julia PyCall package to call Matplotlib directly from
3671 Julia with little or no overhead (arrays are passed without making a copy).")
3672 (license license:expat)))
3674 (define-public julia-quadgk
3676 (name "julia-quadgk")
3682 (url "https://github.com/JuliaMath/QuadGK.jl")
3683 (commit (string-append "v" version))))
3684 (file-name (git-file-name name version))
3686 (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
3687 (build-system julia-build-system)
3689 `(("julia-datastructures" ,julia-datastructures)))
3690 (home-page "https://github.com/JuliaMath/QuadGK.jl")
3691 (synopsis "Adaptive 1d numerical Gauss–Kronrod integration")
3692 (description "This package provides support for one-dimensional numerical
3693 integration in Julia using adaptive Gauss-Kronrod quadrature. The code was
3694 originally part of Base Julia. It supports integration of arbitrary numeric
3695 types, including arbitrary precision (@code{BigFloat}), and even integration of
3696 arbitrary normed vector spaces (e.g. matrix-valued integrands).")
3697 (license license:expat)))
3699 (define-public julia-quadmath
3701 (name "julia-quadmath")
3707 (url "https://github.com/JuliaMath/Quadmath.jl")
3708 (commit (string-append "v" version))))
3709 (file-name (git-file-name name version))
3711 (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
3712 (build-system julia-build-system)
3715 (modify-phases %standard-phases
3716 (add-after 'link-depot 'hardcode-libmath-location
3717 (lambda* (#:key inputs #:allow-other-keys)
3718 (let ((gcclib (assoc-ref inputs "gcc:lib")))
3719 (substitute* "src/Quadmath.jl"
3720 (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
3721 (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
3724 `(("julia-requires" ,julia-requires)))
3726 `(("gcc:lib" ,gcc "lib")))
3728 `(("julia-specialfunctions" ,julia-specialfunctions)))
3729 (home-page "https://github.com/JuliaMath/Quadmath.jl")
3730 (synopsis "Float128 and libquadmath for the Julia language")
3731 (description "This is a Julia interface to @code{libquadmath}, providing a
3732 @code{Float128} type corresponding to the IEEE754 binary128 floating point
3734 (license license:expat)))
3736 (define-public julia-quaternions
3738 (name "julia-quaternions")
3744 (url "https://github.com/JuliaGeometry/Quaternions.jl")
3745 (commit (string-append "v" version))))
3746 (file-name (git-file-name name version))
3748 (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s"))))
3749 (build-system julia-build-system)
3751 `(("julia-dualnumbers" ,julia-dualnumbers)))
3752 (home-page "https://github.com/JuliaGeometry/Quaternions.jl")
3753 (synopsis "Quaternion and dual-quaternion functionality")
3754 (description "Quaternions are best known for their suitability as
3755 representations of 3D rotational orientation. They can also be viewed as an
3756 extension of complex numbers.")
3757 (license license:expat)))
3759 (define-public julia-queryoperators
3761 (name "julia-queryoperators")
3767 (url "https://github.com/queryverse/QueryOperators.jl")
3768 (commit (string-append "v" version))))
3769 (file-name (git-file-name name version))
3771 (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22"))))
3772 (build-system julia-build-system)
3774 `(("julia-datastructures" ,julia-datastructures)
3775 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3776 ("julia-tableshowutils" ,julia-tableshowutils)))
3777 (home-page "https://github.com/queryverse/QueryOperators.jl")
3778 (synopsis "Query operators for Julia")
3779 (description "This package contains the underlying query operators that are
3780 exposed to users in @code{Query.jl}.")
3781 (license license:expat)))
3783 (define-public julia-rangearrays
3785 (name "julia-rangearrays")
3791 (url "https://github.com/JuliaArrays/RangeArrays.jl")
3792 (commit (string-append "v" version))))
3793 (file-name (git-file-name name version))
3795 (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg"))))
3796 (build-system julia-build-system)
3797 (home-page "https://github.com/JuliaArrays/RangeArrays.jl")
3798 (synopsis "Array data structures with autogenerated columns")
3799 (description "The goal of RangeArrays is to provide efficient and convenient
3800 array data structures where the columns of the arrays are generated (on the fly)
3802 (license license:expat)))
3804 (define-public julia-ratios
3806 (name "julia-ratios")
3812 (url "https://github.com/timholy/Ratios.jl")
3813 (commit (string-append "v" version))))
3814 (file-name (git-file-name name version))
3816 (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh"))))
3817 (build-system julia-build-system)
3818 (home-page "https://github.com/timholy/Ratios.jl")
3819 (synopsis "Faster Rational-like types for Julia")
3820 (description "This package provides types similar to Julia's @code{Rational}
3821 type, which make some sacrifices but have better computational performance.")
3822 (license license:expat)))
3824 (define-public julia-recipesbase
3826 (name "julia-recipesbase")
3832 (url "https://github.com/JuliaPlots/RecipesBase.jl")
3833 (commit (string-append "v" version))))
3834 (file-name (git-file-name name version))
3836 (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
3837 (build-system julia-build-system)
3838 (home-page "https://github.com/JuliaPlots/RecipesBase.jl")
3839 (synopsis "Define transformation recipes on user types")
3840 (description "This package implements handy macros @code{@@recipe} and
3841 @code{@@series} which will define a custom transformation and attach attributes
3842 for user types. Its design is an attempt to simplify and generalize the summary
3843 and display of types and data from external packages. With this package it is
3844 possible to describe visualization routines that can be used as components in
3845 more complex visualizations.")
3846 (license license:expat)))
3848 (define-public julia-recipespipeline
3850 (name "julia-recipespipeline")
3856 (url "https://github.com/JuliaPlots/RecipesPipeline.jl")
3857 (commit (string-append "v" version))))
3858 (file-name (git-file-name name version))
3860 (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7"))))
3861 (build-system julia-build-system)
3863 `(#:tests? #f)) ; Cycle with Plots.jl.
3865 `(("julia-nanmath" ,julia-nanmath)
3866 ("julia-plotutils" ,julia-plotutils)
3867 ("julia-recipesbase" ,julia-recipesbase)))
3868 (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/")
3869 (synopsis "Utilities for processing recipes")
3870 (description "This package was factored out of @code{Plots.jl} to allow any
3871 other plotting package to use the recipe pipeline. In short, the extremely
3872 lightweight @code{RecipesBase.jl} package can be depended on by any package to
3873 define \"recipes\": plot specifications of user-defined types, as well as custom
3874 plot types. @code{RecipePipeline.jl} contains the machinery to translate these
3875 recipes to full specifications for a plot.")
3876 (license license:expat)))
3878 (define-public julia-recursivearraytools
3880 (name "julia-recursivearraytools")
3886 (url "https://github.com/SciML/RecursiveArrayTools.jl")
3887 (commit (string-append "v" version))))
3888 (file-name (git-file-name name version))
3890 (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
3891 (build-system julia-build-system)
3893 `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
3895 `(("julia-arrayinterface" ,julia-arrayinterface)
3896 ("julia-chainrulescore" ,julia-chainrulescore)
3897 ("julia-docstringextensions" ,julia-docstringextensions)
3898 ("julia-recipesbase" ,julia-recipesbase)
3899 ("julia-requires" ,julia-requires)
3900 ("julia-staticarrays" ,julia-staticarrays)
3901 ("julia-zygoterules" ,julia-zygoterules)))
3903 ; `(("julia-forwarddiff" ,julia-forwarddiff)
3904 ; ("julia-nlsolve" ,julia-nlsolve)
3905 ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq)
3906 ; ("julia-structarrays" ,julia-structarrays)
3907 ; ("julia-zygote" ,julia-zygote)))
3908 (home-page "https://github.com/SciML/RecursiveArrayTools.jl")
3909 (synopsis "Tools for handling objects like arrays of arrays and deeper nestings")
3910 (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with
3911 recursive arrays like arrays of arrays.")
3912 (license license:expat)))
3914 (define-public julia-reexport
3916 (name "julia-reexport")
3922 (url "https://github.com/simonster/Reexport.jl")
3923 (commit (string-append "v" version))))
3924 (file-name (git-file-name name version))
3926 (base32 "0inf5q6f01ncd5c5wm8mwzv2hs627ng6xlh8dhrlflp321hbamwf"))))
3927 (build-system julia-build-system)
3928 (home-page "https://github.com/simonster/Reexport.jl")
3929 (synopsis "Re-export modules and symbols")
3930 (description "This package provides tools to re-export modules and symbols.")
3931 (license license:expat)))
3933 (define-public julia-referencetests
3935 (name "julia-referencetests")
3941 (url "https://github.com/JuliaTesting/ReferenceTests.jl")
3942 (commit (string-append "v" version))))
3943 (file-name (git-file-name name version))
3945 (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
3946 (build-system julia-build-system)
3948 `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
3950 `(("julia-deepdiffs" ,julia-deepdiffs)
3951 ("julia-distances" ,julia-distances)
3952 ("julia-fileio" ,julia-fileio)
3953 ("julia-imagecore" ,julia-imagecore)
3954 ("julia-imageinterminal" ,julia-imageinterminal)))
3956 ; `(("julia-csvfiles" ,julia-csvfiles)
3957 ; ("julia-dataframes" ,julia-dataframes)
3958 ; ("julia-gr" ,julia-gr)
3959 ; ("julia-imagemagick" ,julia-imagemagick)
3960 ; ("julia-imagetransformations" ,julia-imagetransformations)
3961 ; ("julia-plots" ,julia-plots)
3962 ; ("julia-testimages" ,julia-testimages)))
3963 (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/")
3964 (synopsis "Utility package for comparing data against reference files")
3965 (description "@code{ReferenceTests.jl} is a Julia package that adds a couple
3966 of additional macros to your testing toolbox. In particular, it focuses on
3967 functionality for testing values against reference files, which in turn the
3968 package can help create and update if need be.")
3969 (license license:expat)))
3971 (define-public julia-requires
3973 (name "julia-requires")
3979 (url "https://github.com/JuliaPackaging/Requires.jl/")
3980 (commit (string-append "v" version))))
3981 (file-name (git-file-name name version))
3983 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
3984 (build-system julia-build-system)
3985 (inputs ;required for test
3986 `(("julia-example" ,julia-example)))
3988 `(("julia-colors" ,julia-colors)))
3989 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
3990 (synopsis "Faster package loader")
3991 (description "This package make loading packages faster, maybe. It
3992 supports specifying glue code in packages which will load automatically when
3993 another package is loaded, so that explicit dependencies (and long load times)
3995 (license license:expat)))
3997 (define-public julia-reversediff
3999 (name "julia-reversediff")
4005 (url "https://github.com/JuliaDiff/ReverseDiff.jl")
4006 (commit (string-append "v" version))))
4007 (file-name (git-file-name name version))
4009 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl"))))
4010 (build-system julia-build-system)
4012 `(("julia-diffresults" ,julia-diffresults)
4013 ("julia-diffrules" ,julia-diffrules)
4014 ("julia-forwarddiff" ,julia-forwarddiff)
4015 ("julia-functionwrappers" ,julia-functionwrappers)
4016 ("julia-macrotools" ,julia-macrotools)
4017 ("julia-nanmath" ,julia-nanmath)
4018 ("julia-specialfunctions" ,julia-specialfunctions)
4019 ("julia-staticarrays" ,julia-staticarrays)))
4021 `(("julia-difftests" ,julia-difftests)
4022 ("julia-fillarrays" ,julia-fillarrays)))
4023 (home-page "https://github.com/JuliaDiff/ReverseDiff.jl")
4024 (synopsis "Reverse Mode Automatic Differentiation for Julia")
4025 (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based
4026 reverse mode @acronym{AD, automatic differentiation}, that implements methods to
4027 take gradients, Jacobians, Hessians, and higher-order derivatives of native
4028 Julia functions (or any callable object, really).")
4029 (license license:expat)))
4031 (define-public julia-richardson
4033 (name "julia-richardson")
4039 (url "https://github.com/JuliaMath/Richardson.jl")
4040 (commit (string-append "v" version))))
4041 (file-name (git-file-name name version))
4043 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
4044 (build-system julia-build-system)
4045 (home-page "https://juliapackages.com/p/richardson")
4046 (synopsis "Extrapolate function using Richardson method")
4047 (description "This package provides a function extrapolate that
4048 extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
4049 only at a geometric sequence of points @code{> x0} (or optionally @code{<
4050 x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
4051 tableau, which adaptively increases the degree of an extrapolation polynomial
4052 until convergence is achieved to a desired tolerance (or convergence stalls
4053 due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
4054 high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
4055 other power series in @code{h}.")
4056 (license license:expat)))
4058 (define-public julia-rotations
4059 ;; This is the first commit with support for julia-1.6.
4060 (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788")
4063 (name "julia-rotations")
4064 (version (git-version "1.0.2" revision commit))
4069 (url "https://github.com/JuliaGeometry/Rotations.jl")
4071 (file-name (git-file-name name version))
4073 (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19"))))
4074 (build-system julia-build-system)
4076 `(("julia-staticarrays" ,julia-staticarrays)))
4078 `(("julia-benchmarktools" ,julia-benchmarktools)
4079 ("julia-forwarddiff" ,julia-forwarddiff)
4080 ("julia-unitful" ,julia-unitful)))
4081 (home-page "https://github.com/JuliaGeometry/Rotations.jl")
4082 (synopsis "Julia implementations for different rotation parameterisations")
4083 (description "This package implements various 3D rotation parameterizations
4084 and defines conversions between them. At their heart, each rotation
4085 parameterization is a 3×3 unitary (orthogonal) matrix (based on the
4086 @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin
4087 through matrix-vector multiplication.")
4088 (license license:expat))))
4090 (define-public julia-safetestsets
4091 ;; The only release tag is the first commit in the repository.
4092 (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
4095 (name "julia-safetestsets")
4096 (version (git-version "0.0.1" revision commit))
4101 (url "https://github.com/YingboMa/SafeTestsets.jl")
4103 (file-name (git-file-name name version))
4105 (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
4106 (build-system julia-build-system)
4108 `(#:julia-package-name "SafeTestsets"
4109 #:julia-package-uuid "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"))
4111 `(("julia-staticarrays" ,julia-staticarrays)))
4112 (home-page "https://github.com/YingboMa/SafeTestsets.jl")
4113 (synopsis "Julia's testset in a module")
4114 (description "This package contains the testset from Julia, packaged into
4115 a loadable module.")
4116 (license license:expat))))
4118 (define-public julia-sass
4126 (url "https://github.com/piever/Sass.jl")
4127 (commit (string-append "v" version))))
4128 (file-name (git-file-name name version))
4130 (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
4131 (build-system julia-build-system)
4133 `(("julia-libsass-jll" ,julia-libsass-jll)))
4134 (home-page "https://github.com/piever/Sass.jl")
4135 (synopsis "Compile scss and sass file to css")
4136 (description "This package provides a simple Julian API to use the
4137 @code{libsass} library to compile scss and sass files to css.")
4138 (license license:expat)))
4140 (define-public julia-scratch
4142 (name "julia-scratch")
4148 (url "https://github.com/JuliaPackaging/Scratch.jl")
4149 (commit (string-append "v" version))))
4150 (file-name (git-file-name name version))
4153 "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
4154 (build-system julia-build-system)
4156 `(#:tests? #f)) ; Test suite tries to access the Julia package registry.
4157 (home-page "https://github.com/JuliaPackaging/Scratch.jl")
4158 (synopsis "Scratch spaces for all your persistent mutable data needs")
4159 (description "This repository implements the scratch spaces API for
4160 package-specific mutable containers of data. These spaces can contain datasets,
4161 text, binaries, or any other kind of data that would be convenient to store in
4162 a location specific to your package. As compared to Artifacts, these containers
4163 of data are mutable. Because the scratch space location on disk is not very
4164 user-friendly, scratch spaces should, in general, not be used for a storing
4165 files that the user must interact with through a file browser.")
4166 (license license:expat)))
4168 (define-public julia-showoff
4170 (name "julia-showoff")
4176 (url "https://github.com/JuliaGraphics/Showoff.jl")
4177 (commit (string-append "v" version))))
4178 (file-name (git-file-name name version))
4180 (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53"))))
4181 (build-system julia-build-system)
4182 (home-page "https://github.com/JuliaGraphics/Showoff.jl")
4183 (synopsis "Nicely format an array of n things for tables and plots")
4184 (description "@code{Showoff} provides an interface for consistently
4185 formatting an array of n things, e.g. numbers, dates, unitful values. It's used
4186 in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.")
4187 (license license:expat)))
4189 (define-public julia-simpletraits
4191 (name "julia-simpletraits")
4197 (url "https://github.com/mauro3/SimpleTraits.jl")
4198 (commit (string-append "v" version))))
4199 (file-name (git-file-name name version))
4201 (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05"))))
4202 (build-system julia-build-system)
4204 `(("julia-macrotools" ,julia-macrotools)))
4205 (home-page "https://github.com/mauro3/SimpleTraits.jl")
4206 (synopsis "Simple Traits for Julia")
4207 (description "This package provides a macro-based implementation of traits.
4208 The main idea behind traits is to group types outside the type-hierarchy and to
4209 make dispatch work with that grouping. The difference to Union-types is that
4210 types can be added to a trait after the creation of the trait, whereas Union
4211 types are fixed after creation.")
4212 (license license:expat)))
4214 (define-public julia-softglobalscope
4216 (name "julia-softglobalscope")
4222 (url "https://github.com/stevengj/SoftGlobalScope.jl")
4223 (commit (string-append "v" version))))
4224 (file-name (git-file-name name version))
4226 (base32 "1n3l0al1vw5jpb4k9a29a71666cdb617nmiqg34wcmyfzrxpvv39"))))
4227 (build-system julia-build-system)
4228 (home-page "https://github.com/stevengj/SoftGlobalScope.jl")
4229 (synopsis "Utilities for soft global scope in interactive Julia environments")
4231 "SoftGlobalScope is a package for the Julia language that simplifies the
4232 variable scoping rules for code in global scope. It is intended for interactive
4233 shells to make it easier to work interactively with Julia, especially for
4235 (license license:expat)))
4237 (define-public julia-sortingalgorithms
4239 (name "julia-sortingalgorithms")
4245 (url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
4246 (commit (string-append "v" version))))
4247 (file-name (git-file-name name version))
4249 (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb"))))
4250 (build-system julia-build-system)
4252 `(#:tests? #f)) ; cycle with StatsBase.jl
4254 `(("julia-datastructures" ,julia-datastructures)))
4256 ; `(("julia-statsbase" ,julia-statsbase)))
4257 (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
4258 (synopsis "Extra sorting algorithms extending Julia's sorting API")
4259 (description "The SortingAlgorithms package provides three sorting
4260 algorithms that can be used with Julia's standard sorting API: heapsort,
4261 timsort and radixsort.")
4262 (license license:expat)))
4264 (define-public julia-specialfunctions
4266 (name "julia-specialfunctions")
4272 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
4273 (commit (string-append "v" version))))
4274 (file-name (git-file-name name version))
4276 (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0"))))
4277 (build-system julia-build-system)
4279 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
4281 `(("julia-chainrulescore" ,julia-chainrulescore)
4282 ("julia-logexpfunctions" ,julia-logexpfunctions)
4283 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
4284 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
4285 (synopsis "Special mathematical functions")
4286 (description "This package provides special mathematical functions,
4287 including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
4288 cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
4289 polygamma functions.")
4290 (license license:expat)))
4292 (define-public julia-splitapplycombine
4294 (name "julia-splitapplycombine")
4300 (url "https://github.com/JuliaData/SplitApplyCombine.jl")
4301 (commit (string-append "v" version))))
4302 (file-name (git-file-name name version))
4304 (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x"))))
4305 (build-system julia-build-system)
4307 `(("julia-dictionaries" ,julia-dictionaries)
4308 ("julia-indexing" ,julia-indexing)))
4309 (home-page "https://github.com/JuliaData/SplitApplyCombine.jl")
4310 (synopsis "Split-apply-combine strategies for Julia")
4311 (description "@code{SplitApplyCombine.jl} provides high-level, generic tools
4312 for manipulating data - particularly focussing on data in nested containers. An
4313 emphasis is placed on ensuring split-apply-combine strategies are easy to apply,
4314 and work reliably for arbitrary iterables and in an optimized way with the data
4315 structures included in Julia's standard library.")
4316 (license license:expat)))
4318 (define-public julia-stablerngs
4320 (name "julia-stablerngs")
4326 (url "https://github.com/JuliaRandom/StableRNGs.jl")
4327 (commit (string-append "v" version))))
4328 (file-name (git-file-name name version))
4330 (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
4331 (build-system julia-build-system)
4332 (home-page "https://github.com/JuliaRandom/StableRNGs.jl")
4333 (synopsis "Julia RNG with stable streams")
4334 (description "This package intends to provide a simple RNG with stable
4335 streams, suitable for tests in packages which need reproducible streams of
4336 random numbers across Julia versions. Indeed, the Julia RNGs provided by
4337 default are documented to have non-stable streams (which for example enables
4338 some performance improvements).")
4339 (license license:expat)))
4341 (define-public julia-stackviews
4343 (name "julia-stackviews")
4349 (url "https://github.com/JuliaArrays/StackViews.jl")
4350 (commit (string-append "v" version))))
4351 (file-name (git-file-name name version))
4353 (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
4354 (build-system julia-build-system)
4357 (modify-phases %standard-phases
4358 (add-after 'link-depot 'skip-doctest
4360 (substitute* "test/runtests.jl"
4361 ((".*doctest.*") ""))
4364 `(("julia-offsetarrays" ,julia-offsetarrays)))
4366 `(("julia-aqua" ,julia-aqua)
4367 ("julia-documenter" ,julia-documenter)))
4368 (home-page "https://github.com/JuliaArrays/StackViews.jl")
4369 (synopsis "No more catcat")
4370 (description "StackViews provides only one array type: @code{StackView}.
4371 There are multiple ways to understand @code{StackView}:
4373 @item inverse of @code{eachslice}
4374 @item @code{cat} variant
4376 @item lazy version of @code{repeat} special case
4378 (license license:expat)))
4380 (define-public julia-static
4382 (name "julia-static")
4388 (url "https://github.com/SciML/Static.jl")
4389 (commit (string-append "v" version))))
4390 (file-name (git-file-name name version))
4392 (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2"))))
4393 (build-system julia-build-system)
4395 `(("julia-ifelse" ,julia-ifelse)))
4397 `(("julia-aqua" ,julia-aqua)))
4398 (home-page "https://github.com/SciML/Static.jl")
4399 (synopsis "Static types useful for dispatch and generated functions")
4400 (description "Static.jl defines a limited set of statically parameterized
4401 types and a common interface that is shared between them.")
4402 (license license:expat)))
4404 (define-public julia-staticarrays
4406 (name "julia-staticarrays")
4412 (url "https://github.com/JuliaArrays/StaticArrays.jl")
4413 (commit (string-append "v" version))))
4414 (file-name (git-file-name name version))
4416 (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79"))))
4417 (build-system julia-build-system)
4419 `(("julia-benchmarktools" ,julia-benchmarktools)))
4420 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
4421 (synopsis "Statically sized arrays")
4422 (description "This package provides a framework for implementing
4423 statically sized arrays in Julia, using the abstract type
4424 @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
4425 @code{StaticArray} will provide fast implementations of common array and
4426 linear algebra operations.")
4427 (license license:expat)))
4429 (define-public julia-statsapi
4431 (name "julia-statsapi")
4437 (url "https://github.com/JuliaStats/StatsAPI.jl")
4438 (commit (string-append "v" version))))
4439 (file-name (git-file-name name version))
4441 (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv"))))
4442 (build-system julia-build-system)
4443 (home-page "https://juliastats.org/")
4444 (synopsis "Statistics-focused namespace for packages to share functions")
4445 (description "This package provides a namespace for data-related generic
4446 function definitions to solve the optional dependency problem; packages wishing
4447 to share and/or extend functions can avoid depending directly on each other by
4448 moving the function definition to @code{StatsAPI.jl} and each package taking a
4450 (license license:expat)))
4452 (define-public julia-statsbase
4454 (name "julia-statsbase")
4460 (url "https://github.com/JuliaStats/StatsBase.jl")
4461 (commit (string-append "v" version))))
4462 (file-name (git-file-name name version))
4464 (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi"))))
4465 (build-system julia-build-system)
4467 `(("julia-dataapi" ,julia-dataapi)
4468 ("julia-datastructures" ,julia-datastructures)
4469 ("julia-missings" ,julia-missings)
4470 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
4471 ("julia-statsapi" ,julia-statsapi)))
4473 `(("julia-stablerngs" ,julia-stablerngs)))
4474 (home-page "https://github.com/JuliaStats/StatsBase.jl")
4475 (synopsis "Basic statistics for Julia")
4476 (description "StatsBase.jl is a Julia package that provides basic support
4477 for statistics. Particularly, it implements a variety of statistics-related
4478 functions, such as scalar statistics, high-order moment computation, counting,
4479 ranking, covariances, sampling, and empirical density estimation.")
4480 (license license:expat)))
4482 (define-public julia-stringdistances
4484 (name "julia-stringdistances")
4490 (url "https://github.com/matthieugomez/StringDistances.jl")
4491 (commit (string-append "v" version))))
4492 (file-name (git-file-name name version))
4494 (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7"))))
4495 (build-system julia-build-system)
4497 `(("julia-distances" ,julia-distances)))
4498 (home-page "https://github.com/matthieugomez/StringDistances.jl")
4499 (synopsis "String Distances in Julia")
4500 (description "This package provides string distances in Julia. Distances
4501 are defined for @code{AbstractStrings}, and any iterator that define
4502 @code{length()}. The package also defines Distance \"modifiers\" that can be
4503 applied to any distance.")
4504 (license license:expat)))
4506 (define-public julia-structarrays
4508 (name "julia-structarrays")
4514 (url "https://github.com/JuliaArrays/StructArrays.jl")
4515 (commit (string-append "v" version))))
4516 (file-name (git-file-name name version))
4518 (base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v"))))
4519 (build-system julia-build-system)
4521 `(("julia-dataapi" ,julia-dataapi)
4522 ("julia-staticarrays" ,julia-staticarrays)
4523 ("julia-tables" ,julia-tables)))
4525 `(("julia-documenter" ,julia-documenter)
4526 ("julia-offsetarrays" ,julia-offsetarrays)
4527 ("julia-pooledarrays" ,julia-pooledarrays)
4528 ("julia-typedtables" ,julia-typedtables)
4529 ("julia-weakrefstrings" ,julia-weakrefstrings)))
4530 (home-page "https://github.com/JuliaArrays/StructArrays.jl")
4531 (synopsis "Efficient implementation of struct arrays in Julia")
4532 (description "This package introduces the type @code{StructArray} which is
4533 an @code{AbstractArray} whose elements are @code{struct} (for example
4534 @code{NamedTuples}, or @code{ComplexF64}, or a custom user defined
4535 @code{struct}). While a @code{StructArray} iterates @code{structs}, the layout
4536 is column based (meaning each field of the @code{struct} is stored in a separate
4538 (license license:expat)))
4540 (define-public julia-structtypes
4542 (name "julia-structtypes")
4548 (url "https://github.com/JuliaData/StructTypes.jl")
4549 (commit (string-append "v" version))))
4550 (file-name (git-file-name name version))
4552 (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
4553 (build-system julia-build-system)
4554 (home-page "https://juliadata.github.io/StructTypes.jl/stable/")
4555 (synopsis "Abstract definitions and convenience methods for Julia objects")
4556 (description "This package provides the @code{StructTypes.StructType} trait
4557 for Julia types to declare the kind of \"struct\" they are, providing
4558 serialization/deserialization packages patterns and strategies to automatically
4559 construct objects.")
4560 (license license:expat)))
4562 (define-public julia-suppressor
4564 (name "julia-suppressor")
4570 (url "https://github.com/JuliaIO/Suppressor.jl")
4571 (commit (string-append "v" version))))
4572 (file-name (git-file-name name version))
4574 (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
4575 (build-system julia-build-system)
4576 (home-page "https://github.com/JuliaIO/Suppressor.jl")
4577 (synopsis "Capture stdout and sterr")
4578 (description "Julia macros for suppressing and/or capturing output (stdout),
4579 warnings (stderr) or both streams at the same time.")
4580 (license license:expat)))
4582 (define-public julia-tableiointerface
4584 (name "julia-tableiointerface")
4590 (url "https://github.com/lungben/TableIOInterface.jl")
4591 (commit (string-append "v" version))))
4592 (file-name (git-file-name name version))
4594 (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"))))
4595 (build-system julia-build-system)
4596 (home-page "https://github.com/lungben/TableIOInterface.jl")
4597 (synopsis "File formats based on file extensions")
4598 (description "This package determines tabular file formats based on file
4599 extensions. It is intended to be the base both for @code{TableIO.jl} and for
4600 the @code{Pluto.jl} tabular data import functionality.")
4601 (license license:expat)))
4603 (define-public julia-tables
4605 (name "julia-tables")
4611 (url "https://github.com/JuliaData/Tables.jl")
4612 (commit (string-append "v" version))))
4613 (file-name (git-file-name name version))
4615 (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb"))))
4616 (build-system julia-build-system)
4618 `(("julia-dataapi" ,julia-dataapi)
4619 ("julia-datavalueinterfaces" ,julia-datavalueinterfaces)
4620 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
4621 ("julia-tabletraits" ,julia-tabletraits)))
4623 `(("julia-datavalues" ,julia-datavalues)
4624 ("julia-queryoperators" ,julia-queryoperators)))
4625 (home-page "https://github.com/JuliaData/Tables.jl")
4626 (synopsis "Interface for tables in Julia")
4627 (description "The @code{Tables.jl} package provides simple, yet powerful
4628 interface functions for working with all kinds tabular data.")
4629 (license license:expat)))
4631 (define-public julia-tableshowutils
4632 ;; The 0.2.5 release is not fully compatable with newer versions of Julia.
4633 (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460")
4636 (name "julia-tableshowutils")
4642 (url "https://github.com/queryverse/TableShowUtils.jl")
4644 (file-name (git-file-name name version))
4646 (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5"))))
4647 (build-system julia-build-system)
4649 `(("julia-datavalues" ,julia-datavalues)
4650 ("julia-json" ,julia-json)))
4651 (home-page "https://github.com/queryverse/TableShowUtils.jl")
4652 (synopsis "Implement show for TableTraits.jl types")
4653 (description "This package provides some common helper functions that make
4654 it easier to implement various @code{Base.show} functions for types that
4655 participate in the @code{TableTraits.jl} ecosystem.")
4656 (license license:expat))))
4658 (define-public julia-tabletraits
4660 (name "julia-tabletraits")
4666 (url "https://github.com/queryverse/TableTraits.jl")
4667 (commit (string-append "v" version))))
4668 (file-name (git-file-name name version))
4670 (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"))))
4671 (build-system julia-build-system)
4673 `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)))
4674 (home-page "https://github.com/queryverse/TableTraits.jl")
4675 (synopsis "Traits for Julia tables")
4676 (description "TableTraits defines a generic interface for tabular data.")
4677 (license license:expat)))
4679 (define-public julia-tensorcore
4681 (name "julia-tensorcore")
4687 (url "https://github.com/JuliaMath/TensorCore.jl")
4688 (commit (string-append "v" version))))
4689 (file-name (git-file-name name version))
4691 (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy"))))
4692 (build-system julia-build-system)
4693 (home-page "https://github.com/JuliaMath/TensorCore.jl")
4694 (synopsis "Tensor-algebra definitions")
4695 (description "This package is intended as a lightweight foundation for
4696 tensor operations across the Julia ecosystem. Currently it exports three
4697 operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor,
4698 product preserves all dimensions}, and @acronym{boxdot, contracts neighboring
4700 (license license:expat)))
4702 (define-public julia-testimages
4704 (name "julia-testimages")
4710 (url "https://github.com/JuliaImages/TestImages.jl")
4711 (commit (string-append "v" version))))
4712 (file-name (git-file-name name version))
4714 (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
4715 (build-system julia-build-system)
4717 `(#:tests? #f)) ; cycle with ImageMagick.jl
4719 `(("julia-axisarrays" ,julia-axisarrays)
4720 ("julia-colortypes" ,julia-colortypes)
4721 ("julia-fileio" ,julia-fileio)
4722 ("julia-offsetarrays" ,julia-offsetarrays)
4723 ("julia-stringdistances" ,julia-stringdistances)))
4725 ; `(("julia-colors" ,julia-colors)
4726 ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
4727 ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment)
4728 ; ("julia-imagemagick" ,julia-imagemagick)
4729 ; ("julia-ometiff" ,julia-ometiff)
4730 ; ("julia-referencetests" ,julia-referencetests)))
4731 (home-page "https://testimages.juliaimages.org/")
4732 (synopsis "Standard test images for Julia")
4733 (description "This package provides a convenient Julia interface for loading
4734 standard named test images and example images for the internal usage in
4735 @code{JuliaImages}. This can be used in conjunction with the @code{Images}
4737 (license license:expat)))
4739 (define-public julia-tracker
4741 (name "julia-tracker")
4747 (url "https://github.com/FluxML/Tracker.jl")
4748 (commit (string-append "v" version))))
4749 (file-name (git-file-name name version))
4751 (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j"))
4752 (patches (search-patches "julia-tracker-16-compat.patch"))))
4753 (build-system julia-build-system)
4755 `(("julia-adapt" ,julia-adapt)
4756 ("julia-diffrules" ,julia-diffrules)
4757 ("julia-forwarddiff" ,julia-forwarddiff)
4758 ("julia-macrotools" ,julia-macrotools)
4759 ("julia-nanmath" ,julia-nanmath)
4760 ("julia-nnlib" ,julia-nnlib)
4761 ("julia-requires" ,julia-requires)
4762 ("julia-specialfunctions" ,julia-specialfunctions)))
4764 `(("julia-pdmats" ,julia-pdmats)))
4765 (home-page "https://github.com/FluxML/Tracker.jl")
4766 (synopsis "Operator overloading reverse-mode automatic differentiator")
4767 (description "@code{Tracker.jl} previously provided @code{Flux.jl} with
4768 automatic differentiation for its machine learning platform.")
4769 (license license:expat)))
4771 (define-public julia-transcodingstreams
4773 (name "julia-transcodingstreams")
4779 (url "https://github.com/JuliaIO/TranscodingStreams.jl")
4780 (commit (string-append "v" version))))
4781 (file-name (git-file-name name version))
4783 (base32 "1w3klii293caqiclfh28jggv7f53xclm9fr6xmw38brwrn1hjb48"))))
4784 (build-system julia-build-system)
4786 `(#:tests? #f)) ; Circular dependency with various codecs.
4787 (home-page "https://github.com/JuliaIO/TranscodingStreams.jl")
4788 (synopsis "Fast I/O transcoding data streams")
4789 (description "This package provides tools for transcoding data streams
4792 @item fast: small overhead and specialized methods
4793 @item consistent: basic I/O operations work as expected
4794 @item generic: support any I/O objects like files, buffers, pipes, etc.
4795 @item extensible: easy definition for new codec to transcode data
4797 (license license:expat)))
4799 (define-public julia-typedtables
4801 (name "julia-typedtables")
4807 (url "https://github.com/JuliaData/TypedTables.jl")
4808 (commit (string-append "v" version))))
4809 (file-name (git-file-name name version))
4811 (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i"))))
4812 (build-system julia-build-system)
4814 `(("julia-adapt" ,julia-adapt)
4815 ("julia-splitapplycombine" ,julia-splitapplycombine)
4816 ("julia-tables" ,julia-tables)))
4817 (home-page "https://github.com/JuliaData/TypedTables.jl")
4818 (synopsis "Column-based storage for data analysis in Julia")
4819 (description "@code{TypedTables.jl} provides two column-based storage
4820 containers: @code{Table} and @code{FlexTable}, both of which represent an array
4821 of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use
4822 and fast, and presents a very minimal new interface to learn.")
4823 (license license:expat)))
4825 (define-public julia-unpack
4827 (name "julia-unpack")
4833 (url "https://github.com/mauro3/UnPack.jl")
4834 (commit (string-append "v" version))))
4835 (file-name (git-file-name name version))
4837 (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
4838 (build-system julia-build-system)
4839 (home-page "https://github.com/mauro3/UnPack.jl")
4840 (synopsis "Pack and Unpack macros for Julia")
4841 (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
4842 types, modules, and dictionaries.")
4843 (license license:expat)))
4845 (define-public julia-uris
4853 (url "https://github.com/JuliaWeb/URIs.jl")
4854 (commit (string-append "v" version))))
4855 (file-name (git-file-name name version))
4857 (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
4858 (build-system julia-build-system)
4860 '(#:julia-package-name "URIs" ;required to run tests
4861 #:julia-package-uuid "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
4863 (modify-phases %standard-phases
4864 (add-before 'check 'change-dir
4865 ;; Tests must be run from the testdir
4866 (lambda* (#:key source outputs #:allow-other-keys)
4867 (let ((out (assoc-ref outputs "out")))
4869 (string-append out "/share/julia/loadpath/URIs/test")))
4871 ;; required for tests
4872 (inputs `(("julia-json" ,julia-json)))
4873 (home-page "https://github.com/JuliaWeb/URIs.jl")
4874 (synopsis "URI parsing in Julia")
4875 (description "@code{URIs.jl} is a Julia package that allows parsing and
4876 working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
4878 (license license:expat)))
4880 (define-public julia-unitful
4882 (name "julia-unitful")
4888 (url "https://github.com/PainterQubits/Unitful.jl")
4889 (commit (string-append "v" version))))
4890 (file-name (git-file-name name version))
4892 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
4893 (build-system julia-build-system)
4895 `(("julia-constructionbase" ,julia-constructionbase)))
4896 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
4897 (synopsis "Physical units in Julia")
4898 (description "This package supports SI units and also many other unit
4900 (license license:expat)))
4902 (define-public julia-versionparsing
4904 (name "julia-versionparsing")
4910 (url "https://github.com/JuliaInterop/VersionParsing.jl")
4911 (commit (string-append "v" version))))
4912 (file-name (git-file-name name version))
4914 (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva"))))
4915 (build-system julia-build-system)
4916 (home-page "https://github.com/JuliaInterop/VersionParsing.jl")
4917 (synopsis "Flexible VersionNumber parsing in Julia")
4918 (description "The @code{VersionParsing} package implements flexible parsing
4919 of version-number strings into Julia's built-in @code{VersionNumber} type, via
4920 the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)}
4921 constructor, @code{vparse(string)} can handle version-number strings in a much
4922 wider range of formats than are encompassed by the semver standard. This is
4923 useful in order to support @code{VersionNumber} comparisons applied to
4924 \"foreign\" version numbers from external packages.")
4925 (license license:expat)))
4927 (define-public julia-weakrefstrings
4929 (name "julia-weakrefstrings")
4935 (url "https://github.com/JuliaData/WeakRefStrings.jl")
4936 (commit (string-append "v" version))))
4937 (file-name (git-file-name name version))
4939 (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219"))))
4940 (build-system julia-build-system)
4942 `(("julia-dataapi" ,julia-dataapi)
4943 ("julia-parsers" ,julia-parsers)))
4944 (home-page "https://github.com/JuliaData/WeakRefStrings.jl")
4945 (synopsis "Efficient string representation and transfer in Julia")
4946 (description "This package provides a minimal String type for Julia that
4947 allows for efficient string representation and transfer")
4948 (license license:expat)))
4950 (define-public julia-woodburymatrices
4952 (name "julia-woodburymatrices")
4958 (url "https://github.com/timholy/WoodburyMatrices.jl")
4959 (commit (string-append "v" version))))
4960 (file-name (git-file-name name version))
4962 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
4963 (build-system julia-build-system)
4964 (home-page "https://github.com/timholy/WoodburyMatrices.jl")
4965 (synopsis "Support for the Woodbury matrix identity for Julia")
4966 (description "This package provides support for the Woodbury matrix identity
4967 for the Julia programming language. This is a generalization of the
4968 Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious
4969 for floating-point roundoff errors, so be prepared for a certain amount of
4970 inaccuracy in the result.")
4971 (license license:expat)))
4973 (define-public julia-zipfile
4975 (name "julia-zipfile")
4981 (url "https://github.com/fhs/ZipFile.jl")
4982 (commit (string-append "v" version))))
4983 (file-name (git-file-name name version))
4986 "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
4987 (build-system julia-build-system)
4989 `(("julia-zlib-jll" ,julia-zlib-jll)))
4990 (home-page "https://github.com/fhs/ZipFile.jl")
4991 (synopsis "Read/Write ZIP archives in Julia")
4992 (description "This module provides support for reading and writing ZIP
4993 archives in Julia.")
4994 (license license:expat)))
4996 (define-public julia-zygoterules
4998 (name "julia-zygoterules")
5004 (url "https://github.com/FluxML/ZygoteRules.jl")
5005 (commit (string-append "v" version))))
5006 (file-name (git-file-name name version))
5008 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
5009 (build-system julia-build-system)
5011 `(("julia-macrotools" ,julia-macrotools)))
5012 (home-page "https://github.com/FluxML/ZygoteRules.jl")
5013 (synopsis "Add minimal custom gradients to Zygote")
5014 (description "Minimal package which enables to add custom gradients to
5015 Zygote, without depending on Zygote itself.")
5016 (license license:expat)))
5018 (define-public julia-zygote
5020 (name "julia-zygote")
5026 (url "https://github.com/FluxML/Zygote.jl")
5027 (commit (string-append "v" version))))
5028 (file-name (git-file-name name version))
5030 (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
5031 (build-system julia-build-system)
5033 `(#:tests? #f)) ;require CUDA, not packaged yet
5035 `(("julia-abstractffs" ,julia-abstractffts)
5036 ("julia-chainrules" ,julia-chainrules)
5037 ("julia-diffrules" ,julia-diffrules)
5038 ("julia-fillarrays" ,julia-fillarrays)
5039 ("julia-forwarddiff" ,julia-forwarddiff)
5040 ("julia-irtools" ,julia-irtools)
5041 ("julia-macrotools" ,julia-macrotools)
5042 ("julia-nanmath" ,julia-nanmath)
5043 ("julia-requires" ,julia-requires)
5044 ("julia-specialfunctions" ,julia-specialfunctions)
5045 ("julia-zygote-rules" ,julia-zygoterules)))
5046 (home-page "https://fluxml.ai/Zygote.jl")
5047 (synopsis "Automatic differentiation in Julia")
5048 (description "Zygote provides source-to-source automatic
5049 differentiation (AD) in Julia, and is the next-generation AD system for the
5050 Flux differentiable programming framework.")
5051 (license license:expat)))