gnu/packages/package-management.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
   3 ;;; Copyright © 2015, 2017, 2020 Ricardo Wurmus <rekado@elephly.net>
   4 ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
   5 ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com>
   6 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
   7 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
   8 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
   9 ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
  10 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
  11 ;;; Copyright © 2018, 2019 Eric Bavier <bavier@member.fsf.org>
  12 ;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
  13 ;;; Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
  14 ;;;
  15 ;;; This file is part of GNU Guix.
  16 ;;;
  17 ;;; GNU Guix is free software; you can redistribute it and/or modify it
  18 ;;; under the terms of the GNU General Public License as published by
  19 ;;; the Free Software Foundation; either version 3 of the License, or (at
  20 ;;; your option) any later version.
  21 ;;;
  22 ;;; GNU Guix is distributed in the hope that it will be useful, but
  23 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  24 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  25 ;;; GNU General Public License for more details.
  26 ;;;
  27 ;;; You should have received a copy of the GNU General Public License
  28 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  29
  30 (define-module (gnu packages package-management)
  31   #:use-module (gnu packages)
  32   #:use-module (gnu packages acl)
  33   #:use-module (gnu packages attr)
  34   #:use-module (gnu packages avahi)
  35   #:use-module (gnu packages autotools)
  36   #:use-module (gnu packages backup)
  37   #:use-module (gnu packages base)
  38   #:use-module (gnu packages bdw-gc)
  39   #:use-module (gnu packages bison)
  40   #:use-module (gnu packages bootstrap)          ;for 'bootstrap-guile-origin'
  41   #:use-module (gnu packages check)
  42   #:use-module (gnu packages compression)
  43   #:use-module (gnu packages cpio)
  44   #:use-module (gnu packages crypto)
  45   #:use-module (gnu packages curl)
  46   #:use-module (gnu packages dbm)
  47   #:use-module (gnu packages docbook)
  48   #:use-module (gnu packages file)
  49   #:use-module (gnu packages gettext)
  50   #:use-module (gnu packages glib)
  51   #:use-module (gnu packages gnome)
  52   #:use-module (gnu packages gnupg)
  53   #:use-module (gnu packages graphviz)
  54   #:use-module (gnu packages gtk)
  55   #:use-module (gnu packages guile)
  56   #:use-module (gnu packages guile-xyz)
  57   #:use-module (gnu packages linux)
  58   #:use-module (gnu packages lisp)
  59   #:use-module (gnu packages man)
  60   #:use-module (gnu packages nettle)
  61   #:use-module (gnu packages nss)
  62   #:use-module (gnu packages patchutils)
  63   #:use-module (gnu packages perl)
  64   #:use-module (gnu packages perl-check)
  65   #:use-module (gnu packages pkg-config)
  66   #:use-module (gnu packages popt)
  67   #:use-module (gnu packages python)
  68   #:use-module (gnu packages python-web)
  69   #:use-module (gnu packages python-xyz)
  70   #:use-module (gnu packages serialization)
  71   #:use-module (gnu packages sqlite)
  72   #:use-module (gnu packages ssh)
  73   #:use-module (gnu packages texinfo)
  74   #:use-module (gnu packages time)
  75   #:use-module (gnu packages tls)
  76   #:use-module (gnu packages vim)
  77   #:use-module (gnu packages virtualization)
  78   #:use-module (gnu packages web)
  79   #:use-module (gnu packages xml)
  80   #:use-module (gnu packages xorg)
  81   #:use-module (guix build-system glib-or-gtk)
  82   #:use-module (guix build-system gnu)
  83   #:use-module (guix build-system meson)
  84   #:use-module (guix build-system python)
  85   #:use-module (guix download)
  86   #:use-module (guix gexp)
  87   #:use-module (guix git-download)
  88   #:use-module ((guix licenses) #:prefix license:)
  89   #:use-module (guix packages)
  90   #:use-module (guix utils)
  91   #:use-module (ice-9 match)
  92   #:use-module (srfi srfi-1))
  93
  94 (define (boot-guile-uri arch)
  95   "Return the URI for the bootstrap Guile tarball for ARCH."
  96   (cond ((string=? "armhf" arch)
  97          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
  98                         arch "-linux"
  99                         "/20150101/guile-2.0.11.tar.xz"))
 100         ((string=? "aarch64" arch)
 101          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 102                         arch "-linux/20170217/guile-2.0.14.tar.xz"))
 103         (else
 104          (string-append "http://alpha.gnu.org/gnu/guix/bootstrap/"
 105                         arch "-linux"
 106                         "/20131110/guile-2.0.9.tar.xz"))))
 107
 108 (define-public guix
 109   ;; Latest version of Guix, which may or may not correspond to a release.
 110   ;; Note: the 'update-guix-package.scm' script expects this definition to
 111   ;; start precisely like this.
 112   (let ((version "1.0.1")
 113         (commit "c2f9ea2b502a617bb69227d5f858eee9d4288a6a")
 114         (revision 14))
 115     (package
 116       (name "guix")
 117
 118       (version (if (zero? revision)
 119                    version
 120                    (string-append version "-"
 121                                   (number->string revision)
 122                                   "." (string-take commit 7))))
 123       (source (origin
 124                 (method git-fetch)
 125                 (uri (git-reference
 126                       (url "https://git.savannah.gnu.org/r/guix.git")
 127                       (commit commit)))
 128                 (sha256
 129                  (base32
 130                   "0hg6yrqlzqiv4gmk9liqar6m9qhhn66q75jsmh86awjwq4qmvyab"))
 131                 (file-name (string-append "guix-" version "-checkout"))))
 132       (build-system gnu-build-system)
 133       (arguments
 134        `(#:configure-flags (list
 135                             "--localstatedir=/var"
 136                             "--sysconfdir=/etc"
 137                             (string-append "--with-bash-completion-dir="
 138                                            (assoc-ref %outputs "out")
 139                                            "/etc/bash_completion.d")
 140
 141                             ;; Set 'DOT_USER_PROGRAM' to the empty string so
 142                             ;; we don't keep a reference to Graphviz, whose
 143                             ;; closure is pretty big (too big for the Guix
 144                             ;; system installation image.)
 145                             "ac_cv_path_DOT_USER_PROGRAM=dot"
 146
 147                             ;; To avoid problems with the length of shebangs,
 148                             ;; choose a fixed-width and short directory name
 149                             ;; for tests.
 150                             "ac_cv_guix_test_root=/tmp/guix-tests")
 151          #:parallel-tests? #f         ;work around <http://bugs.gnu.org/21097>
 152
 153          #:modules ((guix build gnu-build-system)
 154                     (guix build utils)
 155                     (srfi srfi-26)
 156                     (ice-9 popen)
 157                     (ice-9 rdelim))
 158
 159          #:phases (modify-phases %standard-phases
 160                     (replace 'bootstrap
 161                       (lambda _
 162                         ;; Make sure 'msgmerge' can modify the PO files.
 163                         (for-each (lambda (po)
 164                                     (chmod po #o666))
 165                                   (find-files "." "\\.po$"))
 166
 167                         (patch-shebang "build-aux/git-version-gen")
 168
 169                         (call-with-output-file ".tarball-version"
 170                           (lambda (port)
 171                             (display ,version port)))
 172
 173                         (invoke "sh" "bootstrap")))
 174                     (add-before 'check 'copy-bootstrap-guile
 175                       (lambda* (#:key system inputs #:allow-other-keys)
 176                         ;; Copy the bootstrap guile tarball in the store used
 177                         ;; by the test suite.
 178                         (define (intern file recursive?)
 179                           ;; Note: don't use 'guix download' here because we
 180                           ;; need to set the 'recursive?' argument.
 181                           (define base
 182                             (strip-store-file-name file))
 183
 184                           (define code
 185                             `(begin
 186                                (use-modules (guix))
 187                                (with-store store
 188                                  (let* ((item (add-to-store store ,base
 189                                                             ,recursive?
 190                                                             "sha256" ,file))
 191                                         (root (string-append "/tmp/gc-root-"
 192                                                              (basename item))))
 193                                    ;; Register a root so that the GC tests
 194                                    ;; don't delete those.
 195                                    (symlink item root)
 196                                    (add-indirect-root store root)))))
 197
 198                           (invoke "./test-env" "guile" "-c"
 199                                   (object->string code)))
 200
 201                         (intern (assoc-ref inputs "boot-guile") #f)
 202
 203                         ;; On x86_64 some tests need the i686 Guile.
 204                         ,@(if (and (not (%current-target-system))
 205                                    (string=? (%current-system)
 206                                              "x86_64-linux"))
 207                               '((intern (assoc-ref inputs "boot-guile/i686") #f))
 208                               '())
 209
 210                         ;; Copy the bootstrap executables.
 211                         (for-each (lambda (input)
 212                                     (intern (assoc-ref inputs input) #t))
 213                                   '("bootstrap/bash" "bootstrap/mkdir"
 214                                     "bootstrap/tar" "bootstrap/xz"))
 215                         #t))
 216                     (add-after 'unpack 'disable-failing-tests
 217                       ;; XXX FIXME: These tests fail within the build container.
 218                       (lambda _
 219                         (substitute* "tests/syscalls.scm"
 220                           (("^\\(test-(assert|equal) \"(clone|setns|pivot-root)\"" all)
 221                            (string-append "(test-skip 1)\n" all)))
 222                         (substitute* "tests/containers.scm"
 223                           (("^\\(test-(assert|equal)" all)
 224                            (string-append "(test-skip 1)\n" all)))
 225                         (when (file-exists? "tests/guix-environment-container.sh")
 226                           (substitute* "tests/guix-environment-container.sh"
 227                             (("guix environment --version")
 228                              "exit 77\n")))
 229                         #t))
 230                     (add-before 'check 'set-SHELL
 231                       (lambda _
 232                         ;; 'guix environment' tests rely on 'SHELL' having a
 233                         ;; correct value, so set it.
 234                         (setenv "SHELL" (which "sh"))
 235                         #t))
 236                     (add-after 'install 'wrap-program
 237                       (lambda* (#:key inputs outputs #:allow-other-keys)
 238                         ;; Make sure the 'guix' command finds GnuTLS,
 239                         ;; Guile-JSON, and Guile-Git automatically.
 240                         (let* ((out    (assoc-ref outputs "out"))
 241                                (guile  (assoc-ref inputs "guile"))
 242                                (gcrypt (assoc-ref inputs "guile-gcrypt"))
 243                                (json   (assoc-ref inputs "guile-json"))
 244                                (sqlite (assoc-ref inputs "guile-sqlite3"))
 245                                (git    (assoc-ref inputs "guile-git"))
 246                                (bs     (assoc-ref inputs
 247                                                   "guile-bytestructures"))
 248                                (ssh    (assoc-ref inputs "guile-ssh"))
 249                                (gnutls (assoc-ref inputs "gnutls"))
 250                                (locales (assoc-ref inputs "glibc-utf8-locales"))
 251                                (deps   (list gcrypt json sqlite gnutls
 252                                              git bs ssh))
 253                                (effective
 254                                 (read-line
 255                                  (open-pipe* OPEN_READ
 256                                              (string-append guile "/bin/guile")
 257                                              "-c" "(display (effective-version))")))
 258                                (path   (string-join
 259                                         (map (cut string-append <>
 260                                                   "/share/guile/site/"
 261                                                   effective)
 262                                              (delete #f deps))
 263                                         ":"))
 264                                (gopath (string-join
 265                                         (map (cut string-append <>
 266                                                   "/lib/guile/" effective
 267                                                   "/site-ccache")
 268                                              (delete #f deps))
 269                                         ":"))
 270                                (locpath (string-append locales "/lib/locale")))
 271
 272                           (wrap-program (string-append out "/bin/guix")
 273                             `("GUILE_LOAD_PATH" ":" prefix (,path))
 274                             `("GUILE_LOAD_COMPILED_PATH" ":" prefix (,gopath))
 275                             `("GUIX_LOCPATH" ":" suffix (,locpath)))
 276
 277                           #t))))))
 278       (native-inputs `(("pkg-config" ,pkg-config)
 279
 280                        ;; XXX: Keep the development inputs here even though
 281                        ;; they're unnecessary, just so that 'guix environment
 282                        ;; guix' always contains them.
 283                        ("autoconf" ,autoconf-wrapper)
 284                        ("automake" ,automake)
 285                        ("gettext" ,gettext-minimal)
 286                        ("texinfo" ,texinfo)
 287                        ("graphviz" ,graphviz)
 288                        ("help2man" ,help2man)
 289                        ("po4a" ,po4a)))
 290       (inputs
 291        `(("bzip2" ,bzip2)
 292          ("gzip" ,gzip)
 293          ("zlib" ,zlib)              ;for 'guix publish'
 294          ("lzlib" ,lzlib)            ;for 'guix publish' and 'guix substitute'
 295
 296          ("sqlite" ,sqlite)
 297          ("libgcrypt" ,libgcrypt)
 298
 299          ("guile" ,guile-2.2)
 300
 301          ;; Some of the tests use "unshare" when it is available.
 302          ("util-linux" ,util-linux)
 303
 304          ;; Many tests rely on the 'guile-bootstrap' package, which is why we
 305          ;; have it here.
 306          ("boot-guile" ,(bootstrap-guile-origin (%current-system)))
 307          ,@(if (and (not (%current-target-system))
 308                     (string=? (%current-system) "x86_64-linux"))
 309                `(("boot-guile/i686" ,(bootstrap-guile-origin "i686-linux")))
 310                '())
 311
 312          ;; Tests also rely on these bootstrap executables.
 313          ("bootstrap/bash" ,(bootstrap-executable "bash" (%current-system)))
 314          ("bootstrap/mkdir" ,(bootstrap-executable "mkdir" (%current-system)))
 315          ("bootstrap/tar" ,(bootstrap-executable "tar" (%current-system)))
 316          ("bootstrap/xz" ,(bootstrap-executable "xz" (%current-system)))
 317
 318          ("glibc-utf8-locales" ,glibc-utf8-locales)))
 319       (propagated-inputs
 320        `(("gnutls" ,gnutls)
 321          ("guile-gcrypt" ,guile-gcrypt)
 322          ("guile-json" ,guile-json-3)
 323          ("guile-sqlite3" ,guile-sqlite3)
 324          ("guile-ssh" ,guile-ssh)
 325          ("guile-git" ,guile-git)))
 326
 327       (home-page "https://www.gnu.org/software/guix/")
 328       (synopsis "Functional package manager for installed software packages and versions")
 329       (description
 330        "GNU Guix is a functional package manager for the GNU system, and is
 331 also a distribution thereof.  It includes a virtual machine image.  Besides
 332 the usual package management features, it also supports transactional
 333 upgrades and roll-backs, per-user profiles, and much more.  It is based on
 334 the Nix package manager.")
 335       (license license:gpl3+)
 336       (properties '((ftp-server . "alpha.gnu.org"))))))
 337
 338 (define-public guix-daemon
 339   ;; This package is for internal consumption: it allows us to quickly build
 340   ;; the 'guix-daemon' program and use that in (guix self), used by 'guix
 341   ;; pull'.
 342   (package
 343     (inherit guix)
 344     (properties `((hidden? . #t)))
 345     (name "guix-daemon")
 346
 347     ;; Use a minimum set of dependencies.
 348     (native-inputs
 349      (fold alist-delete (package-native-inputs guix)
 350            '("po4a" "graphviz" "help2man")))
 351     (inputs
 352      `(("gnutls" ,gnutls)
 353        ("guile-git" ,guile-git)
 354        ("guile-json" ,guile-json-3)
 355        ("guile-gcrypt" ,guile-gcrypt)
 356        ,@(fold alist-delete (package-inputs guix)
 357                '("boot-guile" "boot-guile/i686" "util-linux"))))
 358
 359     (propagated-inputs '())
 360
 361     (arguments
 362      (substitute-keyword-arguments (package-arguments guix)
 363        ((#:configure-flags flags '())
 364         ;; Pretend we have those libraries; we don't actually need them.
 365         `(append ,flags
 366                  '("guix_cv_have_recent_guile_sqlite3=yes"
 367                    "guix_cv_have_recent_guile_ssh=yes")))
 368        ((#:tests? #f #f)
 369         #f)
 370        ((#:phases phases '%standard-phases)
 371         `(modify-phases ,phases
 372            (add-after 'unpack 'change-default-guix
 373              (lambda _
 374                ;; We need to tell 'guix-daemon' which 'guix' command to use.
 375                ;; Here we use a questionable hack where we hard-code root's
 376                ;; current guix, which could be wrong (XXX).  Note that scripts
 377                ;; like 'guix perform-download' do not run as root so we assume
 378                ;; that they have access to /var/guix/profiles/per-user/root.
 379                (substitute* "nix/libstore/globals.cc"
 380                  (("guixProgram = (.*)nixBinDir + \"/guix\"" _ before)
 381                   (string-append "guixProgram = " before
 382                                  "/var/guix/profiles/per-user/root\
 383 /current-guix/bin/guix")))
 384                #t))
 385            (replace 'build
 386              (lambda _
 387                (invoke "make" "nix/libstore/schema.sql.hh")
 388                (invoke "make" "-j" (number->string
 389                                     (parallel-job-count))
 390                        "guix-daemon")))
 391            (delete 'copy-bootstrap-guile)
 392            (replace 'install
 393              (lambda* (#:key outputs #:allow-other-keys)
 394                (invoke "make" "install-binPROGRAMS")))
 395            (delete 'wrap-program)))))))
 396
 397 (define-public guile2.0-guix
 398   (deprecated-package "guile2.0-guix" guix))
 399
 400 (define-public guile3.0-guix
 401   (package
 402     (inherit guix)
 403     (name "guile3.0-guix")
 404     (inputs
 405      `(("guile" ,guile-3.0)
 406        ,@(alist-delete "guile" (package-inputs guix))))
 407     (propagated-inputs
 408      `(("gnutls" ,guile3.0-gnutls)
 409        ("guile-gcrypt" ,guile3.0-gcrypt)
 410        ("guile-json" ,guile3.0-json)
 411        ("guile-sqlite3" ,guile3.0-sqlite3)
 412        ("guile-ssh" ,guile3.0-ssh)
 413        ("guile-git" ,guile3.0-git)))))
 414
 415 (define-public guix-minimal
 416   ;; A version of Guix which is built with the minimal set of dependencies, as
 417   ;; outlined in the README "Requirements" section.  Intended as a CI job, so
 418   ;; marked as hidden.
 419   (hidden-package
 420    (package
 421      (inherit guix)
 422      (name "guix-minimal")
 423      (inputs
 424       `(("guile" ,guile-2.2)
 425         ,@(alist-delete "guile" (package-inputs guix))))
 426      (propagated-inputs
 427       (fold alist-delete
 428             (package-propagated-inputs guix)
 429             '("guile-ssh"))))))
 430
 431 (define (source-file? file stat)
 432   "Return true if FILE is likely a source file, false if it is a typical
 433 generated file."
 434   (define (wrong-extension? file)
 435     (or (string-suffix? "~" file)
 436         (member (file-extension file)
 437                 '("o" "a" "lo" "so" "go"))))
 438
 439   (match (basename file)
 440     ((or ".git" "autom4te.cache" "configure" "Makefile" "Makefile.in" ".libs")
 441      #f)
 442     ((? wrong-extension?)
 443      #f)
 444     (_
 445      #t)))
 446
 447 (define-public current-guix-package
 448   ;; This parameter allows callers to override the package that 'current-guix'
 449   ;; returns.  This is useful when 'current-guix' cannot compute it by itself,
 450   ;; for instance because it's not running from a source code checkout.
 451   (make-parameter #f))
 452
 453 (define-public current-guix
 454   (let* ((repository-root (delay (canonicalize-path
 455                                   (string-append (current-source-directory)
 456                                                  "/../.."))))
 457          (select? (delay (or (git-predicate (force repository-root))
 458                              source-file?))))
 459     (lambda ()
 460       "Return a package representing Guix built from the current source tree.
 461 This works by adding the current source tree to the store (after filtering it
 462 out) and returning a package that uses that as its 'source'."
 463       (or (current-guix-package)
 464           (package
 465             (inherit guix)
 466             (version (string-append (package-version guix) "+"))
 467             (source (local-file (force repository-root) "guix-current"
 468                                 #:recursive? #t
 469                                 #:select? (force select?))))))))
 470
 471 \f
 472 ;;;
 473 ;;; Other tools.
 474 ;;;
 475
 476 (define-public nix
 477   (package
 478     (name "nix")
 479     (version "2.0.4")
 480     (source (origin
 481              (method url-fetch)
 482              (uri (string-append "http://nixos.org/releases/nix/nix-"
 483                                  version "/nix-" version ".tar.xz"))
 484              (sha256
 485               (base32
 486                "0ss9svxlh1pvrdmnqjvjyqjmbqmrdbyfarvbb14i9d4bggzl0r8n"))))
 487     (build-system gnu-build-system)
 488     (native-inputs `(("pkg-config" ,pkg-config)))
 489     (inputs `(("curl" ,curl)
 490               ("bzip2" ,bzip2)
 491               ("libgc" ,libgc)
 492               ("libseccomp" ,libseccomp)
 493               ("libsodium" ,libsodium)
 494               ("openssl" ,openssl)
 495               ("sqlite" ,sqlite)
 496               ("xz" ,xz)))
 497     (home-page "https://nixos.org/nix/")
 498     (synopsis "The Nix package manager")
 499     (description
 500      "Nix is a purely functional package manager.  This means that it treats
 501 packages like values in purely functional programming languages such as
 502 Haskell—they are built by functions that don't have side-effects, and they
 503 never change after they have been built.  Nix stores packages in the Nix
 504 store, usually the directory /nix/store, where each package has its own unique
 505 sub-directory.")
 506     (license license:lgpl2.1+)))
 507
 508 (define-public stow
 509   (package
 510     (name "stow")
 511     (version "2.3.1")
 512     (source (origin
 513               (method url-fetch)
 514               (uri (string-append "mirror://gnu/stow/stow-"
 515                                   version ".tar.gz"))
 516               (sha256
 517                (base32
 518                 "0jrxy12ywn7smdzdnvwzjw77l6knx6jkj2rckgykg1dpf6bdkm89"))))
 519     (build-system gnu-build-system)
 520     (inputs
 521      `(("perl" ,perl)))
 522     (native-inputs
 523      `(("perl-test-simple" ,perl-test-simple)
 524        ("perl-test-output" ,perl-test-output)
 525        ("perl-capture-tiny" ,perl-capture-tiny)
 526        ("perl-io-stringy" ,perl-io-stringy)))
 527     (home-page "https://www.gnu.org/software/stow/")
 528     (synopsis "Managing installed software packages")
 529     (description
 530      "GNU Stow is a symlink manager.  It generates symlinks to directories
 531 of data and makes them appear to be merged into the same directory.  It is
 532 typically used for managing software packages installed from source, by
 533 letting you install them apart in distinct directories and then create
 534 symlinks to the files in a common directory such as /usr/local.")
 535     (license license:gpl3+)))
 536
 537 (define-public rpm
 538   (package
 539     (name "rpm")
 540     (version "4.14.2.1")
 541     (source (origin
 542               (method url-fetch)
 543               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
 544                                   (version-major+minor version) ".x/rpm-"
 545                                   version ".tar.bz2"))
 546               (sha256
 547                (base32
 548                 "1nmck2fq9h85fgs3zhh6w1avlw5y16cbz5khd459ry3jfd5w4f8i"))))
 549     (build-system gnu-build-system)
 550     (arguments
 551      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
 552                            "--enable-python"
 553                            "--without-lua")
 554        #:phases (modify-phases %standard-phases
 555                   (add-before 'configure 'set-nss-library-path
 556                     (lambda* (#:key inputs #:allow-other-keys)
 557                       (let ((nss (assoc-ref inputs "nss")))
 558                         (setenv "LIBRARY_PATH"
 559                                 (string-append (getenv "LIBRARY_PATH") ":"
 560                                                nss "/lib/nss"))
 561                         #t))))))
 562     (native-inputs
 563      `(("pkg-config" ,pkg-config)))
 564     (inputs
 565      `(("python" ,python)
 566        ("xz" ,xz)
 567        ("bdb" ,bdb)
 568        ("popt" ,popt)
 569        ("nss" ,nss)
 570        ("nspr" ,nspr)
 571        ("libarchive" ,libarchive)
 572        ("file" ,file)
 573        ("bzip2" ,bzip2)
 574        ("zlib" ,zlib)
 575        ("cpio" ,cpio)))
 576     (home-page "https://rpm.org/")
 577     (synopsis "The RPM Package Manager")
 578     (description
 579      "The RPM Package Manager (RPM) is a command-line driven package
 580 management system capable of installing, uninstalling, verifying, querying,
 581 and updating computer software packages.  Each software package consists of an
 582 archive of files along with information about the package like its version, a
 583 description.  There is also a library permitting developers to manage such
 584 transactions from C or Python.")
 585
 586     ;; The whole is GPLv2+; librpm itself is dual-licensed LGPLv2+ | GPLv2+.
 587     (license license:gpl2+)))
 588
 589 (define-public python-anaconda-client
 590   (package
 591     (name "python-anaconda-client")
 592     (version "1.6.3")
 593     (source
 594      (origin
 595        (method git-fetch)
 596        (uri (git-reference
 597               (url "https://github.com/Anaconda-Platform/anaconda-client")
 598               (commit version)))
 599        (file-name (git-file-name name version))
 600        (sha256
 601         (base32
 602          "0w1bfxnydjl9qp53r2gcvr6vlpdqqilcrzqxrll9sgg6vwdyiyyp"))))
 603     (build-system python-build-system)
 604     (propagated-inputs
 605      `(("python-pyyaml" ,python-pyyaml)
 606        ("python-requests" ,python-requests)
 607        ("python-clyent" ,python-clyent)))
 608     (native-inputs
 609      `(("python-pytz" ,python-pytz)
 610        ("python-dateutil" ,python-dateutil)
 611        ("python-mock" ,python-mock)
 612        ("python-coverage" ,python-coverage)
 613        ("python-pillow" ,python-pillow)))
 614     (arguments
 615      `(#:phases
 616        (modify-phases %standard-phases
 617          ;; This is needed for some tests.
 618          (add-before 'check 'set-up-home
 619            (lambda* _ (setenv "HOME" "/tmp") #t))
 620          (add-before 'check 'remove-network-tests
 621            (lambda* _
 622              ;; Remove tests requiring a network connection
 623              (let ((network-tests '("tests/test_upload.py"
 624                                     "tests/test_authorizations.py"
 625                                     "tests/test_login.py"
 626                                     "tests/test_whoami.py"
 627                                     "utils/notebook/tests/test_data_uri.py"
 628                                     "utils/notebook/tests/test_base.py"
 629                                     "utils/notebook/tests/test_downloader.py"
 630                                     "inspect_package/tests/test_conda.py")))
 631                (with-directory-excursion "binstar_client"
 632                  (for-each delete-file network-tests)))
 633              #t)))))
 634     (home-page "https://github.com/Anaconda-Platform/anaconda-client")
 635     (synopsis "Anaconda Cloud command line client library")
 636     (description
 637      "Anaconda Cloud command line client library provides an interface to
 638 Anaconda Cloud.  Anaconda Cloud is useful for sharing packages, notebooks and
 639 environments.")
 640     (license license:bsd-3)))
 641
 642 (define-public python2-anaconda-client
 643   (package-with-python2 python-anaconda-client))
 644
 645 (define-public python-conda
 646   (package
 647     (name "python-conda")
 648     (version "4.3.16")
 649     (source
 650      (origin
 651        (method git-fetch)
 652        (uri (git-reference
 653               (url "https://github.com/conda/conda")
 654               (commit version)))
 655        (file-name (git-file-name name version))
 656        (sha256
 657         (base32
 658          "1qwy0awx4qf2pbk8z2b7q6wdcq7mvwpxxjhg27mbirdvs5hw7hb2"))))
 659     (build-system python-build-system)
 660     (arguments
 661      `(#:phases
 662        (modify-phases %standard-phases
 663          (add-before 'build 'create-version-file
 664            (lambda _
 665              (with-output-to-file "conda/.version"
 666                (lambda () (display ,version)))
 667              #t))
 668          (add-before 'check 'remove-failing-tests
 669            (lambda _
 670              ;; These tests require internet/network access
 671              (let ((network-tests '("test_cli.py"
 672                                     "test_create.py"
 673                                     "test_export.py"
 674                                     "test_fetch.py"
 675                                     "test_history.py"
 676                                     "test_info.py"
 677                                     "test_install.py"
 678                                     "test_priority.py"
 679                                     "conda_env/test_cli.py"
 680                                     "conda_env/test_create.py"
 681                                     "conda_env/specs/test_notebook.py"
 682                                     "conda_env/utils/test_notebooks.py"
 683                                     "core/test_index.py"
 684                                     "core/test_repodata.py")))
 685                (with-directory-excursion "tests"
 686                  (for-each delete-file network-tests)
 687
 688                  ;; FIXME: This test creates a file, then deletes it and tests
 689                  ;; that the file was deleted.  For some reason it fails when
 690                  ;; building with guix, but does not when you run it in the
 691                  ;; directory left when you build with the --keep-failed
 692                  ;; option
 693                  (delete-file "gateways/disk/test_delete.py")
 694                  ;; This file is no longer writable after downloading with 'git-fetch'
 695                  (make-file-writable "conda_env/support/saved-env/environment.yml")
 696                  #t))))
 697          (replace 'check
 698            (lambda _
 699              (setenv "HOME" "/tmp")
 700              (invoke "py.test"))))))
 701     (native-inputs
 702      `(("python-cytoolz" ,python-cytoolz)
 703        ("python-ruamel.yaml" ,python-ruamel.yaml)
 704        ("python-requests" ,python-requests)
 705        ("python-pycosat" ,python-pycosat)
 706        ("python-pytest" ,python-pytest)
 707        ("python-responses" ,python-responses)
 708        ("python-pyyaml" ,python-pyyaml)
 709        ("python-anaconda-client" ,python-anaconda-client)))
 710     (home-page "https://github.com/conda/conda")
 711     (synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
 712     (description
 713      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 714 is the package manager used by Anaconda installations, but it may be used for
 715 other systems as well.  Conda makes environments first-class citizens, making
 716 it easy to create independent environments even for C libraries.  Conda is
 717 written entirely in Python.
 718
 719 This package provides Conda as a library.")
 720     (license license:bsd-3)))
 721
 722 (define-public python2-conda
 723   (let ((base (package-with-python2
 724                (strip-python2-variant python-conda))))
 725     (package (inherit base)
 726              (native-inputs
 727               `(("python2-enum34" ,python2-enum34)
 728                 ,@(package-native-inputs base))))))
 729
 730 (define-public conda
 731   (package (inherit python-conda)
 732     (name "conda")
 733     (arguments
 734      (substitute-keyword-arguments (package-arguments python-conda)
 735        ((#:phases phases)
 736         `(modify-phases ,phases
 737            (replace 'build
 738              (lambda* (#:key outputs #:allow-other-keys)
 739                ;; This test fails when run before installation.
 740                (delete-file "tests/test_activate.py")
 741
 742                ;; Fix broken defaults
 743                (substitute* "conda/base/context.py"
 744                  (("return sys.prefix")
 745                   (string-append "return \"" (assoc-ref outputs "out") "\""))
 746                  (("return (prefix_is_writable\\(self.root_prefix\\))" _ match)
 747                   (string-append "return False if self.root_prefix == self.conda_prefix else "
 748                                  match)))
 749
 750                ;; The util/setup-testing.py is used to build conda in
 751                ;; application form, rather than the default, library form.
 752                ;; With this, we are able to run commands like `conda --help`
 753                ;; directly on the command line
 754                (invoke "python" "utils/setup-testing.py" "build_py")))
 755            (replace 'install
 756              (lambda* (#:key inputs outputs #:allow-other-keys)
 757                (let* ((out (assoc-ref outputs "out"))
 758                       (target (string-append out "/lib/python"
 759                                              (python-version
 760                                               (assoc-ref inputs "python"))
 761                                              "/site-packages/")))
 762                  ;; The installer aborts if the target directory is not on
 763                  ;; PYTHONPATH.
 764                  (setenv "PYTHONPATH"
 765                          (string-append target ":" (getenv "PYTHONPATH")))
 766
 767                  ;; And it aborts if the directory doesn't exist.
 768                  (mkdir-p target)
 769                  (invoke "python" "utils/setup-testing.py" "install"
 770                          (string-append "--prefix=" out)))))
 771            ;; The "activate" and "deactivate" scripts don't need wrapping.
 772            ;; They also break when they are renamed.
 773            (add-after 'wrap 'undo-wrap
 774              (lambda* (#:key outputs #:allow-other-keys)
 775                (with-directory-excursion (string-append (assoc-ref outputs "out") "/bin/")
 776                  (delete-file "deactivate")
 777                  (rename-file ".deactivate-real" "deactivate")
 778                  (delete-file "activate")
 779                  (rename-file ".activate-real" "activate")
 780                  #t)))))))
 781     (description
 782      "Conda is a cross-platform, Python-agnostic binary package manager.  It
 783 is the package manager used by Anaconda installations, but it may be used for
 784 other systems as well.  Conda makes environments first-class citizens, making
 785 it easy to create independent environments even for C libraries.  Conda is
 786 written entirely in Python.")))
 787
 788 (define-public gwl
 789   (package
 790     (name "gwl")
 791     (version "0.2.1")
 792     (source (origin
 793               (method url-fetch)
 794               (uri (string-append "mirror://gnu/gwl/gwl-" version ".tar.gz"))
 795               (sha256
 796                (base32
 797                 "1ji5jvzni8aml9fmimlr11g3k8isrnlvnbzhmwgdjh72hils0alc"))))
 798     (build-system gnu-build-system)
 799     (arguments
 800      `(#:phases
 801        (modify-phases %standard-phases
 802          (add-before 'build 'fix-tests
 803            (lambda _
 804              ;; Avoid cross-device link.
 805              (substitute* "tests/cache.scm"
 806                (("/tmp/gwl-test-input-XXXXXX")
 807                 (string-append (getcwd) "/gwl-test-input-XXXXXX")))
 808              #t)))))
 809     (native-inputs
 810      `(("autoconf" ,autoconf)
 811        ("automake" ,automake)
 812        ("pkg-config" ,pkg-config)
 813        ("texinfo" ,texinfo)
 814        ("graphviz" ,graphviz)))
 815     (inputs
 816      `(("guile" ,guile-3.0)))
 817     (propagated-inputs
 818      `(("guix" ,guile3.0-guix)
 819        ("guile-commonmark" ,guile3.0-commonmark)
 820        ("guile-gcrypt" ,guile3.0-gcrypt)
 821        ("guile-pfds" ,guile3.0-pfds)
 822        ("guile-syntax-highlight" ,guile3.0-syntax-highlight)
 823        ("guile-wisp" ,guile3.0-wisp)))
 824     (home-page "https://workflows.guix.info")
 825     (synopsis "Workflow management extension for GNU Guix")
 826     (description "The @dfn{Guix Workflow Language} (GWL) provides an
 827 extension to GNU Guix's declarative language for package management to
 828 automate the execution of programs in scientific workflows.  The GWL
 829 can use process engines to integrate with various computing
 830 environments.")
 831     ;; The Scheme modules in guix/ and gnu/ are licensed GPL3+,
 832     ;; the web interface modules in gwl/ are licensed AGPL3+,
 833     ;; and the fonts included in this package are licensed OFL1.1.
 834     (license (list license:gpl3+ license:agpl3+ license:silofl1.1))))
 835
 836 (define-public guix-jupyter
 837   (package
 838     (name "guix-jupyter")
 839     (version "0.1.0")
 840     (home-page "https://gitlab.inria.fr/guix-hpc/guix-kernel")
 841     (source (origin
 842               (method git-fetch)
 843               (uri (git-reference (url home-page)
 844                                   (commit (string-append "v" version))))
 845               (sha256
 846                (base32
 847                 "01z7jjkc7r7lj6637rcgpz40v8xqqyfp6871h94yvcnwm7zy9h1n"))
 848               (file-name (string-append "guix-jupyter-" version "-checkout"))))
 849     (build-system gnu-build-system)
 850     (arguments
 851      `(#:modules ((srfi srfi-26)
 852                   (ice-9 match)
 853                   (ice-9 popen)
 854                   (ice-9 rdelim)
 855                   (guix build utils)
 856                   (guix build gnu-build-system))
 857        #:phases
 858        (modify-phases %standard-phases
 859          (add-after 'install 'sed-kernel-json
 860            (lambda* (#:key inputs outputs #:allow-other-keys)
 861              (let* ((out   (assoc-ref outputs "out"))
 862                     (guix  (assoc-ref inputs  "guix"))
 863                     (guile (assoc-ref inputs  "guile"))
 864                     (json  (assoc-ref inputs  "guile-json"))
 865                     (git   (assoc-ref inputs  "guile-git"))
 866                     (bs    (assoc-ref inputs  "guile-bytestructures"))
 867                     (s-zmq (assoc-ref inputs  "guile-simple-zmq"))
 868                     (gcrypt (assoc-ref inputs  "guile-gcrypt"))
 869                     (deps  (list out s-zmq guix json git bs gcrypt))
 870                     (effective
 871                      (read-line
 872                       (open-pipe* OPEN_READ
 873                                   (string-append guile "/bin/guile")
 874                                   "-c" "(display (effective-version))")))
 875                     (path (map (cut string-append "-L\", \"" <>
 876                                     "/share/guile/site/"
 877                                     effective)
 878                                deps))
 879                     (gopath (map (cut string-append "-C\", \"" <>
 880                                       "/lib/guile/" effective
 881                                       "/site-ccache")
 882                                  deps))
 883                     (kernel-dir (string-append out "/share/jupyter/kernels/guix/")))
 884                (substitute* (string-append kernel-dir "kernel.json")
 885                  (("-s")
 886                   (string-join
 887                    (list (string-join path "\",\n\t\t\"")
 888                          (string-join gopath "\",\n\t\t\"")
 889                          "-s")
 890                    "\",\n\t\t\""))
 891                  (("guix-jupyter-kernel.scm")
 892                   (string-append out "/share/guile/site/2.2/"
 893                                  "guix-jupyter-kernel.scm")))
 894                #t))))))
 895     (native-inputs
 896      `(("autoconf" ,autoconf)
 897        ("automake" ,automake)
 898        ("pkg-config" ,pkg-config)
 899
 900        ;; For testing.
 901        ("jupyter" ,jupyter)
 902        ("python-ipython" ,python-ipython)
 903        ("python-ipykernel" ,python-ipykernel)))
 904     (inputs
 905      `(("guix" ,guix)
 906        ("guile" ,guile-2.2)))
 907     (propagated-inputs
 908      `(("guile-json" ,guile-json-3)
 909        ("guile-simple-zmq" ,guile-simple-zmq)
 910        ("guile-gcrypt" ,guile-gcrypt)))
 911     (synopsis "Guix kernel for Jupyter")
 912     (description
 913      "Guix-Jupyter is a Jupyter kernel.  It allows you to annotate notebooks
 914 with information about their software dependencies, such that code is executed
 915 in the right software environment.  Guix-Jupyter spawns the actual kernels
 916 such as @code{python-ipykernel} on behalf of the notebook user and runs them
 917 in an isolated environment, in separate namespaces.")
 918     (license license:gpl3+)))
 919
 920 (define-public gcab
 921   (package
 922     (name "gcab")
 923     (version "1.2")
 924     (source (origin
 925               (method url-fetch)
 926               (uri (string-append "mirror://gnome/sources/gcab/"
 927                                   version "/gcab-" version ".tar.xz"))
 928               (sha256
 929                (base32
 930                 "038h5kk41si2hc9d9169rrlvp8xgsxq27kri7hv2vr39gvz9cbas"))))
 931     (build-system meson-build-system)
 932     (native-inputs
 933      `(("glib:bin" ,glib "bin")         ; for glib-mkenums
 934        ("intltool" ,intltool)
 935        ("pkg-config" ,pkg-config)
 936        ("vala" ,vala)))
 937     (inputs
 938      `(("glib" ,glib)
 939        ("zlib" ,zlib)))
 940     (arguments
 941      `(#:configure-flags
 942        ;; XXX This ‘documentation’ is for developers, and fails informatively:
 943        ;; Error in gtkdoc helper script: 'gtkdoc-mkhtml' failed with status 5
 944        (list "-Ddocs=false"
 945              "-Dintrospection=false")))
 946     (home-page "https://wiki.gnome.org/msitools") ; no dedicated home page
 947     (synopsis "Microsoft Cabinet file manipulation library")
 948     (description
 949      "The libgcab library provides GObject functions to read, write, and modify
 950 Microsoft cabinet (.@dfn{CAB}) files.")
 951     (license (list license:gpl2+        ; tests/testsuite.at
 952                    license:lgpl2.1+)))) ; the rest
 953
 954 (define-public msitools
 955   (package
 956     (name "msitools")
 957     (version "0.100")
 958     (source (origin
 959               (method url-fetch)
 960               (uri (string-append "mirror://gnome/sources/msitools/"
 961                                   version "/msitools-" version ".tar.xz"))
 962               (sha256
 963                (base32
 964                 "1skq17qr2ic4qr3779j49byfm8rncwbsq9rj1a33ncn2m7isdwdv"))))
 965     (build-system gnu-build-system)
 966     (native-inputs
 967      `(("bison" ,bison)
 968        ("pkg-config" ,pkg-config)))
 969     (inputs
 970      `(("gcab" ,gcab)
 971        ("glib" ,glib)
 972        ("libgsf" ,libgsf)
 973        ("libxml2" ,libxml2)
 974        ("uuid" ,util-linux "lib")))
 975     (home-page "https://wiki.gnome.org/msitools")
 976     (synopsis "Windows Installer file manipulation tool")
 977     (description
 978      "msitools is a collection of command-line tools to inspect, extract, build,
 979 and sign Windows@tie{}Installer (.@dfn{MSI}) files.  It aims to be a solution
 980 for packaging and deployment of cross-compiled Windows applications.")
 981     (license license:lgpl2.1+)))
 982
 983 (define-public libostree
 984   (package
 985     (name "libostree")
 986     (version "2020.1")
 987     (source (origin
 988               (method url-fetch)
 989               (uri (string-append
 990                     "https://github.com/ostreedev/ostree/releases/download/v"
 991                     (version-major+minor version) "/libostree-" version ".tar.xz"))
 992               (sha256
 993                (base32
 994                 "0sgx81w6skiivbr2gfhljf9nvnqfwwnwfgpqqa10fjdkjrqwvpk8"))))
 995     (build-system gnu-build-system)
 996     (arguments
 997      '(#:phases
 998        (modify-phases %standard-phases
 999          (add-before 'check 'pre-check
1000            (lambda _
1001              ;; Don't try to use the non-existing '/var/tmp' as test
1002              ;; directory.
1003              (setenv "TEST_TMPDIR" (getenv "TMPDIR"))
1004              #t)))
1005        ;; XXX: fails with:
1006        ;;     tap-driver.sh: missing test plan
1007        ;;     tap-driver.sh: internal error getting exit status
1008        ;;     tap-driver.sh: fatal: I/O or internal error
1009        #:tests? #f))
1010     (native-inputs
1011      `(("attr" ,attr)                   ; for tests
1012        ("bison" ,bison)
1013        ("glib:bin" ,glib "bin")         ; for 'glib-mkenums'
1014        ("gobject-introspection" ,gobject-introspection)
1015        ("pkg-config" ,pkg-config)
1016        ("xsltproc" ,libxslt)))
1017     (inputs
1018      `(("avahi" ,avahi)
1019        ("docbook-xml" ,docbook-xml-4.2)
1020        ("docbook-xsl" ,docbook-xsl)
1021        ("e2fsprogs" ,e2fsprogs)
1022        ("fuse" ,fuse)
1023        ("glib" ,glib)
1024        ("gpgme" ,gpgme)
1025        ("libarchive" ,libarchive)
1026        ("libsoup" ,libsoup)
1027        ("util-linux" ,util-linux)))
1028     (home-page "https://ostree.readthedocs.io/en/latest/")
1029     (synopsis "Operating system and container binary deployment and upgrades")
1030     (description
1031      "@code{libostree} is both a shared library and suite of command line
1032 tools that combines a \"git-like\" model for committing and downloading
1033 bootable file system trees, along with a layer for deploying them and managing
1034 the boot loader configuration.")
1035     (license license:lgpl2.0+)))
1036
1037 (define-public flatpak
1038   (package
1039    (name "flatpak")
1040    (version "1.4.3")
1041    (source
1042     (origin
1043      (method url-fetch)
1044      (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
1045                          version "/flatpak-" version ".tar.xz"))
1046      (sha256
1047       (base32
1048        "11bfxmv8pxlb5x0lb2rsl45615fzfvq5r6wldf0l6ab2ngryd7i7"))))
1049
1050    ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to
1051    ;; find the TLS backend in glib-networking.
1052    (build-system glib-or-gtk-build-system)
1053
1054    (arguments
1055     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
1056       #:configure-flags (list
1057                          "--enable-documentation=no" ;; FIXME
1058                          "--enable-system-helper=no"
1059                          "--localstatedir=/var"
1060                          (string-append "--with-system-bubblewrap="
1061                                         (assoc-ref %build-inputs "bubblewrap")
1062                                         "/bin/bwrap"))))
1063    (native-inputs `(("bison" ,bison)
1064                     ("gettext" ,gnu-gettext)
1065                     ("glib:bin" ,glib "bin") ; for glib-mkenums + gdbus-codegen
1066                     ("gobject-introspection" ,gobject-introspection)
1067                     ("libcap" ,libcap)
1068                     ("pkg-config" ,pkg-config)))
1069    (propagated-inputs `(("glib-networking" ,glib-networking)
1070                         ("gnupg" ,gnupg)
1071                         ("gsettings-desktop-schemas"
1072                          ,gsettings-desktop-schemas)))
1073    (inputs `(("appstream-glib" ,appstream-glib)
1074              ("bubblewrap" ,bubblewrap)
1075              ("dconf" ,dconf)
1076              ("fuse" ,fuse)
1077              ("gdk-pixbuf" ,gdk-pixbuf)
1078              ("gpgme" ,gpgme)
1079              ("json-glib" ,json-glib)
1080              ("libarchive" ,libarchive)
1081              ("libostree" ,libostree)
1082              ("libseccomp" ,libseccomp)
1083              ("libsoup" ,libsoup)
1084              ("libxau" ,libxau)
1085              ("libxml2" ,libxml2)
1086              ("util-linux" ,util-linux)))
1087    (home-page "https://flatpak.org")
1088    (synopsis "System for building, distributing, and running sandboxed desktop
1089 applications")
1090    (description "Flatpak is a system for building, distributing, and running
1091 sandboxed desktop applications on GNU/Linux.")
1092    (license license:lgpl2.1+)))