1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
3 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
4 ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
5 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
7 ;;; This file is part of GNU Guix.
9 ;;; GNU Guix is free software; you can redistribute it and/or modify it
10 ;;; under the terms of the GNU General Public License as published by
11 ;;; the Free Software Foundation; either version 3 of the License, or (at
12 ;;; your option) any later version.
14 ;;; GNU Guix is distributed in the hope that it will be useful, but
15 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
16 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 ;;; GNU General Public License for more details.
19 ;;; You should have received a copy of the GNU General Public License
20 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
22 (define-module (gnu packages julia-xyz)
23 #:use-module ((guix licenses) #:prefix license:)
24 #:use-module (gnu packages)
25 #:use-module (guix packages)
26 #:use-module (guix git-download)
27 #:use-module (guix build-system julia)
28 #:use-module (gnu packages gcc)
29 #:use-module (gnu packages julia-jll))
31 (define-public julia-abstractffts
33 (name "julia-abstractffts")
39 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
40 (commit (string-append "v" version))))
41 (file-name (git-file-name name version))
43 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
44 (build-system julia-build-system)
45 (inputs ;required for tests
46 `(("julia-unitful" ,julia-unitful)))
47 (home-page "https://github.com/JuliaGPU/Adapt.jl")
48 (synopsis "General framework for fast Fourier transforms (FFTs)")
49 (description "This package allows multiple FFT packages to co-exist with
50 the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
51 mainly not intended to be used directly. Instead, developers of packages that
52 implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
53 types/functions defined in AbstractFFTs.")
54 (license license:expat)))
56 (define-public julia-abstracttrees
58 (name "julia-abstracttrees")
64 (url "https://github.com/JuliaCollections/AbstractTrees.jl")
65 (commit (string-append "v" version))))
66 (file-name (git-file-name name version))
68 (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
69 (build-system julia-build-system)
70 (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
71 (synopsis "Abstract Julia interfaces for working with trees")
72 (description "This Julia package provides several utilities for working
73 with tree-like data structures. Most importantly, it defines the
74 @code{children} method that any package that contains such a data structure
75 may import and extend in order to take advantage of any generic tree algorithm
77 (license license:expat)))
79 (define-public julia-adapt
87 (url "https://github.com/JuliaGPU/Adapt.jl")
88 (commit (string-append "v" version))))
89 (file-name (git-file-name name version))
91 (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7"))))
92 (build-system julia-build-system)
93 (home-page "https://github.com/JuliaGPU/Adapt.jl")
94 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
95 (description "This Julia package provides the @code{adapt(T, x)} function
96 acts like @code{convert(T, x)}, but without the restriction of returning a
97 @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
98 be GPU compatible without throwing away the wrapper.")
99 (license license:expat)))
101 (define-public julia-aqua
109 (url "https://github.com/JuliaTesting/Aqua.jl")
110 (commit (string-append "v" version))))
111 (file-name (git-file-name name version))
113 (base32 "0zcvrwnyhh2kr4d2xv7ps8dh7byw78dx6yb1m9m4dblgscn5kypb"))))
114 (build-system julia-build-system)
115 (home-page "https://github.com/JuliaTesting/Aqua.jl")
116 (synopsis "Automated quality assurance for Julia packages")
117 (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
118 provides functions to run a few automatable checks for Julia packages.")
119 (license license:expat)))
121 (define-public julia-arrayinterface
123 (name "julia-arrayinterface")
129 (url "https://github.com/JuliaArrays/ArrayInterface.jl")
130 (commit (string-append "v" version))))
131 (file-name (git-file-name name version))
133 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33"))))
134 (build-system julia-build-system)
136 `(("julia-ifelse" ,julia-ifelse)
137 ("julia-requires" ,julia-requires)
138 ("julia-static" ,julia-static)))
140 `(("julia-aqua" ,julia-aqua)
141 ("julia-bandedmatrices" ,julia-bandedmatrices)
142 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
143 ("julia-ifelse" ,julia-ifelse)
144 ("julia-offsetarrays" ,julia-offsetarrays)
145 ("julia-staticarrays" ,julia-staticarrays)))
146 (home-page "https://github.com/JuliaArrays/ArrayInterface.jl")
147 (synopsis "Base array interface primitives")
148 (description "The purpose of this library is to solidify extensions to the
149 current @code{AbstractArray} interface, which are put to use in package
150 ecosystems like @code{DifferentialEquations.jl}. Since these libraries are
151 live, this package will serve as a staging ground for ideas before they are
152 merged into Base Julia. For this reason, no functionality is exported so that
153 if such functions are added and exported in a future Base Julia, there will be
154 no issues with the upgrade.")
155 (license license:expat)))
157 (define-public julia-arraylayouts
159 (name "julia-arraylayouts")
165 (url "https://github.com/JuliaMatrices/ArrayLayouts.jl")
166 (commit (string-append "v" version))))
167 (file-name (git-file-name name version))
169 (base32 "0ri05xhfrj2909c6yy09qm6zi8v8s5fvmbbwbg8qgjq0yxnviw32"))))
170 (build-system julia-build-system)
172 `(("julia-fillarrays" ,julia-fillarrays)))
173 (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl")
174 (synopsis "Array layouts and general fast linear algebra")
175 (description "This package implements a trait-based framework for describing
176 array layouts such as column major, row major, etc. that can be dispatched to
177 appropriate BLAS or optimised Julia linear algebra routines. This supports a
178 much wider class of matrix types than Julia's in-built @code{StridedArray}.")
179 (license license:expat)))
181 (define-public julia-axisalgorithms
183 (name "julia-axisalgorithms")
189 (url "https://github.com/timholy/AxisAlgorithms.jl")
190 (commit (string-append "v" version))))
191 (file-name (git-file-name name version))
193 (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk"))))
194 (build-system julia-build-system)
196 `(("julia-woodburymatrices" ,julia-woodburymatrices)))
197 (home-page "https://github.com/timholy/AxisAlgorithms.jl")
198 (synopsis "Filtering and linear algebra routines for multidimensional arrays")
199 (description "@code{AxisAlgorithms} is a collection of filtering and linear
200 algebra algorithms for multidimensional arrays. For algorithms that would
201 typically apply along the columns of a matrix, you can instead pick an arbitrary
203 (license license:expat)))
205 (define-public julia-axisarrays
207 (name "julia-axisarrays")
213 (url "https://github.com/JuliaArrays/AxisArrays.jl")
214 (commit (string-append "v" version))))
215 (file-name (git-file-name name version))
217 (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk"))))
218 (build-system julia-build-system)
220 `(("julia-rangearrays" ,julia-rangearrays)
221 ("julia-intervalsets" ,julia-intervalsets)
222 ("julia-itertools" ,julia-itertools)))
224 `(("julia-offsetarrays" ,julia-offsetarrays)
225 ("julia-unitful" ,julia-unitful)))
226 (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/")
227 (synopsis "Arrays where each dimension can have a named axis with values")
228 (description "This package for the Julia language provides an array type
229 (the AxisArray) that knows about its dimension names and axis values. This
230 allows for indexing by name without incurring any runtime overhead. This
231 permits one to implement algorithms that are oblivious to the storage order of
232 the underlying arrays. AxisArrays can also be indexed by the values along their
233 axes, allowing column names or interval selections.")
234 (license license:expat)))
236 (define-public julia-bandedmatrices
238 (name "julia-bandedmatrices")
244 (url "https://github.com/JuliaMatrices/BandedMatrices.jl")
245 (commit (string-append "v" version))))
246 (file-name (git-file-name name version))
248 (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism"))))
249 (build-system julia-build-system)
251 `(("julia-arraylayouts" ,julia-arraylayouts)
252 ("julia-fillarrays" ,julia-fillarrays)))
254 `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra)))
255 (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl")
256 (synopsis "Julia package for representing banded matrices")
257 (description "This package supports representing banded matrices by only
258 the entries on the bands.")
259 (license license:expat)))
261 (define-public julia-benchmarktools
263 (name "julia-benchmarktools")
269 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
270 (commit (string-append "v" version))))
271 (file-name (git-file-name name version))
273 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
274 (build-system julia-build-system)
275 (propagated-inputs `(("julia-json" ,julia-json)))
276 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
277 (synopsis "Benchmarking framework for the Julia language")
278 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
279 code easy by supplying a framework for writing and running groups of
280 benchmarks as well as comparing benchmark results.")
281 (license license:expat)))
283 (define-public julia-blockarrays
285 (name "julia-blockarrays")
291 (url "https://github.com/JuliaArrays/BlockArrays.jl")
292 (commit (string-append "v" version))))
293 (file-name (git-file-name name version))
295 (base32 "15nd493bfkx92ihnr8dj8mb155dj44iqw266igv0qr5q0wad2bfr"))))
296 (build-system julia-build-system)
298 `(("julia-arraylayouts" ,julia-arraylayouts)
299 ("julia-fillarrays" ,julia-fillarrays)))
301 `(("julia-lazyarrays" ,julia-lazyarrays)
302 ("julia-offsetarrays" ,julia-offsetarrays)
303 ("julia-staticarrays" ,julia-staticarrays)))
304 (home-page "https://github.com/JuliaArrays/BlockArrays.jl")
305 (synopsis "BlockArrays for Julia")
306 (description "A block array is a partition of an array into blocks or
307 subarrays. This package has two purposes. Firstly, it defines an interface for
308 an @code{AbstractBlockArray} block arrays that can be shared among types
309 representing different types of block arrays. The advantage to this is that it
310 provides a consistent API for block arrays.
311 Secondly, it also implements two different type of block arrays that follow the
312 @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each
313 block contiguously while the type @code{PseudoBlockArray} stores the full matrix
314 contiguously. This means that @code{BlockArray} supports fast non copying
315 extraction and insertion of blocks while @code{PseudoBlockArray} supports fast
316 access to the full matrix to use in in for example a linear solver.")
317 (license license:expat)))
319 (define-public julia-blockbandedmatrices
321 (name "julia-blockbandedmatrices")
327 (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
328 (commit (string-append "v" version))))
329 (file-name (git-file-name name version))
331 (base32 "0q9ni4pgdkb00jb42fdzlhx745852xx2666vr96k0c4l0cn5mi0y"))))
332 (build-system julia-build-system)
334 `(("julia-arraylayouts" ,julia-arraylayouts)
335 ("julia-bandedmatrices" ,julia-bandedmatrices)
336 ("julia-blockarrays" ,julia-blockarrays)
337 ("julia-fillarrays" ,julia-fillarrays)
338 ("julia-matrixfactorizations" ,julia-matrixfactorizations)))
339 (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
340 (synopsis "Block-banded matrices and banded-block-banded matrices")
341 (description "This package supports representing block-banded and
342 banded-block-banded matrices by only storing the entries in the non-zero bands.
343 A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
344 @code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
345 (license license:expat)))
347 (define-public julia-bufferedstreams
349 (name "julia-bufferedstreams")
355 (url "https://github.com/BioJulia/BufferedStreams.jl")
356 (commit (string-append "v" version))))
357 (file-name (git-file-name name version))
359 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
360 (build-system julia-build-system)
361 ;; The package is old and tests are using undefined functions. They also
363 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
366 #:julia-package-name "BufferedStreams"))
367 (propagated-inputs `(("julia-compat" ,julia-compat)))
368 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
369 (synopsis "Fast composable IO streams")
370 (description "@code{BufferedStreams.jl} provides buffering for IO
371 operations. It can wrap any @code{IO} type automatically making incremental
372 reading and writing faster.")
373 (license license:expat)))
375 (define-public julia-calculus
377 (name "julia-calculus")
383 (url "https://github.com/JuliaMath/Calculus.jl")
384 (commit (string-append "v" version))))
385 (file-name (git-file-name name version))
387 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
388 (build-system julia-build-system)
389 (home-page "https://github.com/JuliaMath/Calculus.jl")
390 (synopsis "Common utilities for automatic differentiation")
391 (description "This package provides tools for working with the basic
392 calculus operations of differentiation and integration. The @code{Calculus}
393 package produces approximate derivatives by several forms of finite
394 differencing or produces exact derivative using symbolic differentiation. It
395 can also be used to compute definite integrals by different numerical
397 (license license:expat)))
399 (define-public julia-categoricalarrays
401 (name "julia-categoricalarrays")
407 (url "https://github.com/JuliaData/CategoricalArrays.jl")
408 (commit (string-append "v" version))))
409 (file-name (git-file-name name version))
411 (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x"))))
412 (build-system julia-build-system)
414 `(("julia-pooledarrays" ,julia-pooledarrays)))
416 `(("julia-dataapi" ,julia-dataapi)
417 ("julia-json" ,julia-json)
418 ("julia-json3" ,julia-json3)
419 ("julia-missings" ,julia-missings)
420 ("julia-recipesbase" ,julia-recipesbase)
421 ("julia-structtypes" ,julia-structtypes)))
422 (home-page "https://github.com/JuliaData/CategoricalArrays.jl")
423 (synopsis "Arrays for working with categorical data")
424 (description "This package provides tools for working with categorical
425 variables, both with unordered (nominal variables) and ordered categories
426 (ordinal variables), optionally with missing values.")
427 (license license:expat)))
429 (define-public julia-chainrules
431 (name "julia-chainrules")
437 (url "https://github.com/JuliaDiff/ChainRules.jl")
438 (commit (string-append "v" version))))
439 (file-name (git-file-name name version))
441 (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70"))))
442 (build-system julia-build-system)
443 (inputs ;required for test
444 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
445 ("julia-finitedifferences" ,julia-finitedifferences)
446 ("julia-nanmath" ,julia-nanmath)
447 ("julia-specialfunctions" ,julia-specialfunctions)))
449 `(("julia-chainrulescore" ,julia-chainrulescore)
450 ("julia-compat" ,julia-compat)
451 ("julia-reexport" ,julia-reexport)
452 ("julia-requires" ,julia-requires)))
453 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
454 (synopsis "Common utilities for automatic differentiation")
455 (description "The is package provides a variety of common utilities that
456 can be used by downstream automatic differentiation (AD) tools to define and
457 execute forward-, reverse-, and mixed-mode primitives.")
458 (license license:expat)))
460 (define-public julia-chainrulescore
462 (name "julia-chainrulescore")
468 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
469 (commit (string-append "v" version))))
470 (file-name (git-file-name name version))
472 (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb"))))
473 (build-system julia-build-system)
474 (inputs ;required for tests
475 `(("julia-benchmarktools" ,julia-benchmarktools)
476 ("julia-staticarrays" ,julia-staticarrays)))
478 `(("julia-compat" ,julia-compat)))
479 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
480 (synopsis "Common utilities used by downstream automatic differentiation tools")
481 (description "The package provides a light-weight dependency for defining
482 sensitivities for functions without the need to depend on ChainRules itself.")
483 (license license:expat)))
485 (define-public julia-chainrulestestutils
487 (name "julia-chainrulestestutils")
493 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
494 (commit (string-append "v" version))))
495 (file-name (git-file-name name version))
497 (base32 "07l4sjc7avmmp4v1dsym1jyb46q4jsvv7i0yzszf72gj8d9k6lwa"))))
498 (build-system julia-build-system)
500 `(("julia-chainrulescore" ,julia-chainrulescore)
501 ("julia-compat" ,julia-compat)
502 ("julia-finitedifference" ,julia-finitedifferences)))
503 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
504 (synopsis "Common utilities used by downstream automatic differentiation tools")
505 (description "This package is designed to help in testing
506 @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
507 entry points are @code{ChainRulesTestUtils.frule_test},
508 @code{ChainRulesTestUtils.rrule_test}, and
509 @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
510 rules against numerical differentiation (using @code{FiniteDifferences.jl}).
512 @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
513 can be a test-only dependency, allowing it to have potentially heavy
514 dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
515 (license license:expat)))
517 (define-public julia-colors
519 (name "julia-colors")
525 (url "https://github.com/JuliaGraphics/Colors.jl")
526 (commit (string-append "v" version))))
527 (file-name (git-file-name name version))
529 (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
530 (build-system julia-build-system)
532 `(("julia-colortypes" ,julia-colortypes)
533 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
534 ("julia-reexport" ,julia-reexport)))
535 (home-page "https://github.com/JuliaGraphics/Colors.jl")
536 (synopsis "Tools for dealing with color")
537 (description "This package provides a wide array of functions for dealing
538 with color. This includes conversion between colorspaces, measuring distance
539 between colors, simulating color blindness, parsing colors, and generating
540 color scales for graphics.")
541 (license license:expat)))
543 (define-public julia-colorschemes
545 (name "julia-colorschemes")
551 (url "https://github.com/JuliaGraphics/ColorSchemes.jl")
552 (commit (string-append "v" version))))
553 (file-name (git-file-name name version))
556 "08k39hbdf3jn0001f7qxa99xvagrnh9764911hs6cmxkvp061sa4"))))
557 (build-system julia-build-system)
559 `(("julia-colors" ,julia-colors)
560 ("julia-colortypes" ,julia-colortypes)
561 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
562 ("julia-staticarrays" ,julia-staticarrays)))
563 (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl")
564 (synopsis "Colorschemes, colormaps, gradients, and palettes")
565 (description "This package provides a collection of colorschemes.")
566 (license license:expat)))
568 (define-public julia-colortypes
570 (name "julia-colortypes")
576 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
577 (commit (string-append "v" version))))
578 (file-name (git-file-name name version))
580 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
582 '(#:tests? #f)) ;require Documenter, not packaged yet
583 (build-system julia-build-system)
585 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
586 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
587 (synopsis "Basic color types and constructor")
588 (description "This minimalistic package serves as the foundation for
589 working with colors in Julia. It defines basic color types and their
590 constructors, and sets up traits and show methods to make them easier to work
592 (license license:expat)))
594 (define-public julia-colorvectorspace
596 (name "julia-colorvectorspace")
602 (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
603 (commit (string-append "v" version))))
604 (file-name (git-file-name name version))
606 (base32 "1gx4k1bvf6lkzxphnvpkw857ihrkifhb68yvsj889k9pf1vda3fq"))))
607 (build-system julia-build-system)
609 `(("julia-colortypes" ,julia-colortypes)
610 ("julia-specialfunctions" ,julia-specialfunctions)
611 ("julia-tensorcore" ,julia-tensorcore)))
613 `(("julia-colors" ,julia-colors)))
614 (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
615 (synopsis "Treat colors as n-vectors for the purposes of arithmetic")
616 (description "This package is an add-on to @code{ColorTypes.jl} and provides
617 fast mathematical operations for objects with types such as RGB and Gray.
618 Specifically, with this package both grayscale and RGB colors are treated as if
619 they are points in a normed vector space.")
620 (license license:expat)))
622 (define-public julia-combinatorics
624 (name "julia-combinatorics")
630 (url "https://github.com/JuliaMath/Combinatorics.jl")
631 (commit (string-append "v" version))))
632 (file-name (git-file-name name version))
634 (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
635 (build-system julia-build-system)
636 (home-page "https://github.com/JuliaMath/Combinatorics.jl")
637 (synopsis "Combinatorics library for Julia")
638 (description "This package provides a combinatorics library for Julia,
639 focusing mostly (as of now) on enumerative combinatorics and permutations.")
640 (license license:expat)))
642 (define-public julia-commonsubexpressions
644 (name "julia-commonsubexpressions")
650 (url "https://github.com/rdeits/CommonSubexpressions.jl")
651 (commit (string-append "v" version))))
652 (file-name (git-file-name name version))
654 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
655 (build-system julia-build-system)
657 `(("julia-macrotools" ,julia-macrotools)))
658 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
659 (synopsis "@code{@@cse} macro for Julia")
660 (description "This package provides the @code{@@cse} macro, which performs
661 common subexpression elimination.")
662 (license license:expat)))
664 (define-public julia-compat
666 (name "julia-compat")
672 (url "https://github.com/JuliaLang/Compat.jl")
673 (commit (string-append "v" version))))
674 (file-name (git-file-name name version))
676 (base32 "07ij7m4ca399i2bx63kghfhw15wg5pzzrazpaxic1wlpzrpssxfn"))))
677 (build-system julia-build-system)
678 (home-page "https://github.com/JuliaLang/Compat.jl")
679 (synopsis "Compatibility across Julia versions")
680 (description "The Compat package is designed to ease interoperability
681 between older and newer versions of the Julia language. The Compat package
682 provides a macro that lets you use the latest syntax in a backwards-compatible
684 (license license:expat)))
686 (define-public julia-constructionbase
688 (name "julia-constructionbase")
694 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
695 (commit (string-append "v" version))))
696 (file-name (git-file-name name version))
698 (base32 "1bmx5c5z9jxmyf2xjwwl5lhs9czmwq4isl0bkr78fak4j8brqr4n"))))
699 (build-system julia-build-system)
700 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
701 (synopsis "Primitive functions for construction of objects")
702 (description "This very lightweight package provides primitive functions
703 for construction of objects.")
704 (license license:expat)))
706 (define-public julia-coordinatetransformations
708 (name "julia-coordinatetransformations")
714 (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
715 (commit (string-append "v" version))))
716 (file-name (git-file-name name version))
718 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d"))))
719 (build-system julia-build-system)
721 `(#:tests? #f)) ; Documenter.jl not packaged yet.
723 `(("julia-staticarrays" ,julia-staticarrays)))
725 ; `(("julia-documenter" ,julia-documenter)
726 ; ("julia-forwarddiff" ,julia-forwarddiff)
727 ; ("julia-unitful" ,julia-unitful)))
728 (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
729 (synopsis "Coordinate transformations in Julia")
730 (description "@code{CoordinateTransformations} is a Julia package to manage
731 simple or complex networks of coordinate system transformations.
732 Transformations can be easily applied, inverted, composed, and differentiated
733 (both with respect to the input coordinates and with respect to transformation
734 parameters such as rotation angle). Transformations are designed to be
735 light-weight and efficient enough for, e.g., real-time graphical applications,
736 while support for both explicit and automatic differentiation makes it easy to
737 perform optimization and therefore ideal for computer vision applications such
738 as SLAM (simultaneous localization and mapping).")
739 (license license:expat)))
741 (define-public julia-crayons
743 (name "julia-crayons")
749 (url "https://github.com/KristofferC/Crayons.jl")
750 (commit (string-append "v" version))))
751 (file-name (git-file-name name version))
753 (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
754 (build-system julia-build-system)
755 (home-page "https://github.com/KristofferC/Crayons.jl")
756 (synopsis "Colored and styled strings for terminals")
757 (description "Crayons is a package that makes it simple to write strings in
758 different colors and styles to terminals. It supports the 16 system colors,
759 both the 256 color and 24 bit true color extensions, and the different text
760 styles available to terminals.")
761 (license license:expat)))
763 (define-public julia-dataapi
765 (name "julia-dataapi")
771 (url "https://github.com/JuliaData/DataAPI.jl")
772 (commit (string-append "v" version))))
773 (file-name (git-file-name name version))
775 (base32 "14sfvkz169zcbap3gdwpj16qsap783h86fd07flfxk822abam11w"))))
776 (build-system julia-build-system)
777 (home-page "https://github.com/JuliaData/DataAPI.jl")
778 (synopsis "Data-focused namespace for packages to share functions")
779 (description "This package provides a namespace for data-related generic
780 function definitions to solve the optional dependency problem; packages wishing
781 to share and/or extend functions can avoid depending directly on each other by
782 moving the function definition to DataAPI.jl and each package taking a
784 (license license:expat)))
786 (define-public julia-datastructures
788 (name "julia-datastructures")
794 (url "https://github.com/JuliaCollections/DataStructures.jl")
795 (commit (string-append "v" version))))
796 (file-name (git-file-name name version))
798 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
800 `(("julia-compat" ,julia-compat)
801 ("julia-orderedcollections" ,julia-orderedcollections)))
802 (build-system julia-build-system)
803 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
804 (synopsis "Julia module providing different data structures")
805 (description "This package implements a variety of data structures,
806 including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
807 @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
808 (license license:expat)))
810 (define-public julia-datavalueinterfaces
812 (name "julia-datavalueinterfaces")
818 (url "https://github.com/queryverse/DataValueInterfaces.jl")
819 (commit (string-append "v" version))))
820 (file-name (git-file-name name version))
822 (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"))))
823 (build-system julia-build-system)
824 (home-page "https://github.com/queryverse/DataValueInterfaces.jl")
825 (synopsis "Interface for DataValues.jl")
826 (description "This package allows a few \"forward\" definitions for the
827 @code{DataValues.jl} package that other packages can utilize for integration
828 without having to take direct dependencies.")
829 (license license:expat)))
831 (define-public julia-datavalues
833 (name "julia-datavalues")
839 (url "https://github.com/queryverse/DataValues.jl")
840 (commit (string-append "v" version))))
841 (file-name (git-file-name name version))
843 (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
844 (build-system julia-build-system)
846 `(#:tests? #f ; Tests need upgrading with newer Julia version.
848 (modify-phases %standard-phases
849 (add-after 'unpack 'skip-known-failing-tests
851 ;; See upstream report:
852 ;; https://github.com/queryverse/DataValues.jl/issues/83
853 (substitute* "test/array/test_reduce.jl"
854 ((".*DataValue\\(mapreduce.*") "")
855 ((".*DataValue\\(method\\(f.*") ""))
858 `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces)))
859 (home-page "https://github.com/queryverse/DataValues.jl")
860 (synopsis "Missing values for Julia")
861 (description "This package provides the type @code{DataValue} that is used
862 to represent missing data.")
863 (license license:expat)))
865 (define-public julia-deepdiffs
867 (name "julia-deepdiffs")
873 (url "https://github.com/ssfrr/DeepDiffs.jl")
874 (commit (string-append "v" version))))
875 (file-name (git-file-name name version))
877 (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds"))))
878 (build-system julia-build-system)
879 (home-page "https://github.com/ssfrr/DeepDiffs.jl")
880 (synopsis "Compute and pretty-print diffs for data structures")
881 (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function,
882 which finds and displays differences (diffs) between Julia data structures. It
883 supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing
884 dictionaries where values associated with a particular key may change,
885 @code{deepdiff} will recurse into value to provide a more detailed diff.")
886 (license license:expat)))
888 (define-public julia-dictionaries
890 (name "julia-dictionaries")
896 (url "https://github.com/andyferris/Dictionaries.jl")
897 (commit (string-append "v" version))))
898 (file-name (git-file-name name version))
900 (base32 "1j88f6qa5hqm64n5q3jy08a02gwp7by401s03n5x7575p58iqqh2"))))
901 (build-system julia-build-system)
903 `(("julia-indexing" ,julia-indexing)))
904 (home-page "https://github.com/andyferris/Dictionaries.jl")
905 (synopsis "Alternative interface for dictionaries in Julia")
906 (description "This package provides an alternative interface for
907 dictionaries in Julia, for improved productivity and performance.")
908 (license license:expat)))
910 (define-public julia-distances
912 (name "julia-distances")
918 (url "https://github.com/JuliaStats/Distances.jl")
919 (commit (string-append "v" version))))
920 (file-name (git-file-name name version))
922 (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
923 (build-system julia-build-system)
926 (modify-phases %standard-phases
927 (add-after 'unpack 'skip-flakey-tests
929 ;; Some combination of these tests fail nondeterministically
930 ;; each of the times this package is built.
931 (substitute* "test/test_dists.jl"
932 (("test dyz ≥") "test_nowarn dyz ≥")
933 (("test dist\\(y, x") "test_nowarn dist(y, x")
934 (("test dist\\(z, x") "test_nowarn dist(z, x")
935 (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
937 `(("julia-statsapi" ,julia-statsapi)))
939 `(("julia-offsetarrays" ,julia-offsetarrays)
940 ("julia-unitful" ,julia-unitful)))
941 (home-page "https://github.com/JuliaStats/Distances.jl")
942 (synopsis "Julia package for evaluating distances (metrics) between vectors")
943 (description "A Julia package for evaluating distances(metrics) between
944 vectors. This package also provides optimized functions to compute column-wise
945 and pairwise distances, which are often substantially faster than a
946 straightforward loop implementation.")
947 (license license:expat)))
949 (define-public julia-docstringextensions
951 (name "julia-docstringextensions")
957 (url "https://github.com/JuliaDocs/DocStringExtensions.jl")
958 (commit (string-append "v" version))))
959 (file-name (git-file-name name version))
961 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
962 (build-system julia-build-system)
964 `(#:tests? #f)) ; Tests try to read SSL certificates.
965 (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
966 (synopsis "Extensions for Julia's docsystem")
967 (description "This package provides a collection of useful extensions for
968 Julia's built-in docsystem. These are features that are not yet mature enough
969 to be considered for inclusion in Base, or that have sufficiently niche use
970 cases that including them with the default Julia installation is not seen as
971 valuable enough at this time.")
972 (license license:expat)))
974 (define-public julia-diffresults
976 (name "julia-diffresults")
982 (url "https://github.com/JuliaDiff/DiffResults.jl")
983 (commit (string-append "v" version))))
984 (file-name (git-file-name name version))
986 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
988 `(("julia-staticarrays" ,julia-staticarrays)))
989 (build-system julia-build-system)
990 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
991 (synopsis "In-place differentiation methods of primal values at multi-order")
992 (description "This package provides the @code{DiffResult} type, which can
993 be passed to in-place differentiation methods instead of an output buffer.")
994 (license license:expat)))
996 (define-public julia-diffrules
998 (name "julia-diffrules")
1004 (url "https://github.com/JuliaDiff/DiffRules.jl")
1005 (commit (string-append "v" version))))
1006 (file-name (git-file-name name version))
1008 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
1010 `(("julia-nanmath" ,julia-nanmath)
1011 ("julia-specialfunctions" ,julia-specialfunctions)))
1012 (build-system julia-build-system)
1013 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
1014 (synopsis "Primitive differentiation rules")
1015 (description "This package provides primitive differentiation rules that
1016 can be composed via various formulations of the chain rule. Using
1017 @code{DiffRules}, new differentiation rules can defined, query whether or not
1018 a given rule exists, and symbolically apply rules to simple Julia expressions.")
1019 (license license:expat)))
1021 (define-public julia-difftests
1023 (name "julia-difftests")
1029 (url "https://github.com/JuliaDiff/DiffTests.jl")
1030 (commit (string-append "v" version))))
1031 (file-name (git-file-name name version))
1033 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
1034 (build-system julia-build-system)
1035 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
1036 (synopsis "Common test functions for differentiation tools")
1037 (description "This package contains a common suite of test functions for
1038 stressing the robustness of differentiation tools.")
1039 (license license:expat)))
1041 (define-public julia-dualnumbers
1043 (name "julia-dualnumbers")
1049 (url "https://github.com/JuliaDiff/DualNumbers.jl")
1050 (commit (string-append "v" version))))
1051 (file-name (git-file-name name version))
1053 (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
1054 (build-system julia-build-system)
1057 (modify-phases %standard-phases
1058 (add-after 'unpack 'adjust-test-suite
1060 (substitute* "test/runtests.jl"
1061 ;; Seems to not play nicely with SpecialFunctions
1062 ((".*isempty.*") "")))))))
1064 `(("julia-calculus" ,julia-calculus)
1065 ("julia-nanmath" ,julia-nanmath)
1066 ("julia-specialfunctions" ,julia-specialfunctions)))
1067 (home-page "https://github.com/JuliaDiff/DualNumbers.jl")
1068 (synopsis "Represent dual numbers and for perform dual algebra")
1069 (description "The @code{DualNumbers} Julia package defines the @code{Dual}
1070 type to represent dual numbers, and supports standard mathematical operations on
1071 them. Conversions and promotions are defined to allow performing operations on
1072 combinations of dual numbers with predefined Julia numeric types.")
1073 (license license:expat)))
1075 (define-public julia-ellipsisnotation
1077 (name "julia-ellipsisnotation")
1083 (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1084 (commit (string-append "v" version))))
1085 (file-name (git-file-name name version))
1087 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
1088 (build-system julia-build-system)
1091 (modify-phases %standard-phases
1092 (add-after 'unpack 'adjust-test-suite
1094 (substitute* "test/runtests.jl"
1095 ;; Seems to not play nicely with Julia-1.6.
1096 ((".*basic.jl.*") "")))))))
1098 `(("julia-arrayinterface" ,julia-arrayinterface)))
1099 (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1100 (synopsis "Elipsis notation implementation")
1101 (description "This implements the notation @code{..} for indexing arrays.
1102 It's similar to the Python @code{...} in that it means \"all of the columns
1103 before (or after)\".")
1104 (license license:expat)))
1106 (define-public julia-example
1107 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
1109 (name "julia-example")
1110 (version "0.5.4") ;tag not created upstream
1115 (url "https://github.com/JuliaLang/Example.jl")
1117 (file-name (git-file-name name version))
1119 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
1120 (build-system julia-build-system)
1121 (home-page "https://github.com/JuliaLang/Example.jl")
1122 (synopsis "Module providing examples")
1123 (description "This package provides various examples.")
1124 (license license:expat))))
1126 (define-public julia-exprtools
1128 (name "julia-exprtools")
1134 (url "https://github.com/invenia/ExprTools.jl")
1135 (commit (string-append "v" version))))
1136 (file-name (git-file-name name version))
1138 (base32 "1lwxi9fx9farf1jdv42gv43xs3f3i3js2xnvr5gf6d0xfx0g6b6a"))))
1139 (build-system julia-build-system)
1140 (home-page "https://github.com/invenia/ExprTools.jl")
1141 (synopsis "Light-weight expression manipulation tools")
1142 (description "@code{ExprTools} provides tooling for working with Julia
1143 expressions during metaprogramming. This package aims to provide light-weight
1144 performant tooling without requiring additional package dependencies.")
1145 (license license:expat)))
1147 (define-public julia-ffmpeg
1149 (name "julia-ffmpeg")
1155 (url "https://github.com/JuliaIO/FFMPEG.jl")
1156 (commit (string-append "v" version))))
1157 (file-name (git-file-name name version))
1159 (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b"))))
1160 (build-system julia-build-system)
1162 `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
1163 ("julia-x264-jll" ,julia-x264-jll)))
1164 (home-page "https://github.com/JuliaIO/FFMPEG.jl")
1165 (synopsis "Julia Package for ffmpeg")
1166 (description "This package is made to be included into packages that just
1167 need the ffmpeg binaries + executables, and don't want the overhead of
1168 @code{VideoIO.jl}.")
1169 (license license:expat)))
1171 (define-public julia-fileio
1173 (name "julia-fileio")
1179 (url "https://github.com/JuliaIO/FileIO.jl")
1180 (commit (string-append "v" version))))
1181 (file-name (git-file-name name version))
1183 (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
1184 (build-system julia-build-system)
1187 (modify-phases %standard-phases
1188 (delete 'reset-gzip-timestamps)
1189 (add-after 'unpack 'skip-network-tests
1191 ;; These tests try to download audio/video files.
1192 (substitute* "test/query.jl"
1193 (("testset.*(MP4|OGG|MATROSKA).*" all)
1194 (string-append all "return\n")))
1195 (substitute* "test/loadsave.jl"
1196 (("testset.*CSVFiles.*" all)
1197 (string-append all "return\n")))
1198 ;; This test tries to download a Julia package.
1199 (substitute* "test/error_handling.jl"
1200 (("testset.*Not installed.*" all)
1201 (string-append all "return\n")))
1202 ;; This test tries to write to the store.
1203 ;; (Error says can't find User 0)
1204 (substitute* "test/runtests.jl"
1205 ((".*test_mimesave.*") "")))))))
1207 `(("julia-requires" ,julia-requires)))
1209 `(("julia-colortypes" ,julia-colortypes)
1210 ("julia-filepathsbase" ,julia-filepathsbase)
1211 ("julia-http" ,julia-http)))
1212 (home-page "https://github.com/JuliaIO/FileIO.jl")
1213 (synopsis "Main Package for IO, loading all different kind of files")
1214 (description "@code{FileIO} aims to provide a common framework for detecting
1215 file formats and dispatching to appropriate readers/writers. The two core
1216 functions in this package are called @code{load} and @code{save}, and offer
1217 high-level support for formatted files (in contrast with Julia's low-level
1218 @code{read} and @code{write}).")
1219 (license license:expat)))
1221 (define-public julia-filepathsbase
1223 (name "julia-filepathsbase")
1229 (url "https://github.com/rofinn/FilePathsBase.jl")
1230 (commit (string-append "v" version))))
1231 (file-name (git-file-name name version))
1233 (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
1234 (build-system julia-build-system)
1236 `(#:tests? #f)) ; Cycle with JLSO.jl
1237 (home-page "https://github.com/rofinn/FilePathsBase.jl")
1238 (synopsis "Filesystem path types in Julia")
1239 (description "@code{FilePathsBase.jl} provides a type based approach to
1240 working with filesystem paths in Julia.")
1241 (license license:expat)))
1243 (define-public julia-fillarrays
1245 (name "julia-fillarrays")
1251 (url "https://github.com/JuliaArrays/FillArrays.jl")
1252 (commit (string-append "v" version))))
1253 (file-name (git-file-name name version))
1255 (base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d"))))
1256 (build-system julia-build-system)
1257 (inputs ;required by tests
1258 `(("julia-staticarrays" ,julia-staticarrays)))
1259 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
1260 (synopsis "Lazy matrix representation")
1261 (description "This package lazily represents matrices filled with
1262 a single entry, as well as identity matrices. This package exports the
1263 following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
1264 @code{Trues} and @code{Falses}.")
1265 (license license:expat)))
1267 (define-public julia-finitediff
1269 (name "julia-finitediff")
1275 (url "https://github.com/JuliaDiff/FiniteDiff.jl")
1276 (commit (string-append "v" version))))
1277 (file-name (git-file-name name version))
1279 (base32 "0ndazn02wn8ddwgjh1i32y7pbaqpw06f42ccilz5ya78cyrjhq2m"))))
1280 (build-system julia-build-system)
1283 (modify-phases %standard-phases
1284 (add-before 'check 'pre-check
1286 ;; We don't want to run all the tests; the Downstream tests
1287 ;; try to download the package registry.
1288 (setenv "GROUP" "Core")
1291 `(("julia-arrayinterface" ,julia-arrayinterface)
1292 ("julia-requires" ,julia-requires)
1293 ("julia-staticarrays" ,julia-staticarrays)))
1295 `(("julia-bandedmatrices" ,julia-bandedmatrices)
1296 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
1297 ("julia-safetestsets" ,julia-safetestsets)))
1298 (home-page "https://github.com/JuliaDiff/FiniteDiff.jl")
1299 (synopsis "Calculations of gradients, Jacobians, and Hessians")
1300 (description "This package is for calculating derivatives, gradients,
1301 Jacobians, Hessians, etc. numerically. This library is for maximizing speed
1302 while giving a usable interface to end users in a way that specializes on array
1303 types and sparsity.")
1304 (license license:expat)))
1306 (define-public julia-finitedifferences
1308 (name "julia-finitedifferences")
1314 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
1315 (commit (string-append "v" version))))
1316 (file-name (git-file-name name version))
1318 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
1319 (build-system julia-build-system)
1321 `(("julia-benchmarktools" ,julia-benchmarktools)))
1323 `(("julia-chainrulescore" ,julia-chainrulescore)
1324 ("julia-richardson" ,julia-richardson)
1325 ("julia-staticarrays" ,julia-staticarrays)))
1326 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
1327 (synopsis "Estimates derivatives with finite differences")
1328 (description "This package calculates approximate derivatives numerically
1329 using finite difference.")
1330 (license license:expat)))
1332 (define-public julia-fixedpointnumbers
1334 (name "julia-fixedpointnumbers")
1340 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
1341 (commit (string-append "v" version))))
1342 (file-name (git-file-name name version))
1344 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
1345 (build-system julia-build-system)
1348 (modify-phases %standard-phases
1349 (add-after 'unpack 'disable-failing-test
1350 (lambda* (#:key outputs #:allow-other-keys)
1351 (substitute* "test/fixed.jl"
1352 ;; A deprecation warning is not thrown
1353 (("@test_logs.*:warn" all) (string-append "# " all)))
1355 (propagated-inputs `(("julia-compat" ,julia-compat)))
1356 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
1357 (synopsis "Fixed point types for Julia")
1358 (description "@code{FixedPointNumbers.jl} implements fixed-point number
1359 types for Julia. A fixed-point number represents a fractional, or
1360 non-integral, number. In contrast with the more widely known floating-point
1361 numbers, with fixed-point numbers the decimal point doesn't \"float\":
1362 fixed-point numbers are effectively integers that are interpreted as being
1363 scaled by a constant factor. Consequently, they have a fixed number of
1364 digits (bits) after the decimal (radix) point.")
1365 (license license:expat)))
1367 (define-public julia-formatting
1369 (name "julia-formatting")
1375 (url "https://github.com/JuliaIO/Formatting.jl")
1376 (commit (string-append "v" version))))
1377 (file-name (git-file-name name version))
1379 (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh"))))
1380 (build-system julia-build-system)
1381 (home-page "https://github.com/JuliaIO/Formatting.jl")
1382 (synopsis "Julia package to provide Python-like formatting support")
1383 (description "This package offers Python-style general formatting and
1384 c-style numerical formatting.")
1385 (license license:expat)))
1387 (define-public julia-forwarddiff
1389 (name "julia-forwarddiff")
1395 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
1396 (commit (string-append "v" version))))
1397 (file-name (git-file-name name version))
1399 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
1400 (build-system julia-build-system)
1401 (inputs ;required for tests
1402 `(("julia-calculus" ,julia-calculus)
1403 ("julia-difftests" ,julia-difftests)))
1405 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
1406 ("julia-diffresults" ,julia-diffresults)
1407 ("julia-diffrules" ,julia-diffrules)
1408 ("julia-nanmath" ,julia-nanmath)
1409 ("julia-specialfunctions" ,julia-specialfunctions)
1410 ("julia-staticarrays" ,julia-staticarrays)))
1411 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
1412 (synopsis "Methods to take multidimensional derivatives")
1413 (description "This package implements methods to take derivatives,
1414 gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
1415 functions (or any callable object, really) using forward mode automatic
1416 differentiation (AD).")
1417 (license license:expat)))
1419 (define-public julia-functionwrappers
1421 (name "julia-functionwrappers")
1427 (url "https://github.com/yuyichao/FunctionWrappers.jl")
1428 (commit (string-append "v" version))))
1429 (file-name (git-file-name name version))
1431 (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
1432 (build-system julia-build-system)
1435 (modify-phases %standard-phases
1436 (add-after 'unpack 'adjust-tests
1438 (substitute* "test/runtests.jl"
1439 (("testset \\\"Abstract.*" all)
1440 (string-append all "return\n"))))))))
1441 (home-page "https://github.com/yuyichao/FunctionWrappers.jl")
1442 (synopsis "Type stable and efficient wrapper of arbitrary functions")
1443 (description "This package provides a type stable and efficient wrapper of
1444 arbitrary functions.")
1445 (license license:expat)))
1447 (define-public julia-fuzzycompletions
1449 (name "julia-fuzzycompletions")
1455 (url "https://github.com/JunoLab/FuzzyCompletions.jl")
1456 (commit (string-append "v" version))))
1457 (file-name (git-file-name name version))
1459 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
1460 (build-system julia-build-system)
1463 (modify-phases %standard-phases
1464 (add-after 'unpack 'skip-failing-test
1466 (substitute* "test/runtests.jl"
1467 ((".*RPLE.*") "")))))))
1468 (home-page "https://github.com/JunoLab/FuzzyCompletions.jl")
1469 (synopsis "Fuzzy completion provider for Julia")
1471 "FuzzyCompletions provides fuzzy completions for a Julia runtime session.")
1472 (license license:expat)))
1474 (define-public julia-genericlinearalgebra
1476 (name "julia-genericlinearalgebra")
1482 (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1483 (commit (string-append "v" version))))
1484 (file-name (git-file-name name version))
1486 (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
1487 (build-system julia-build-system)
1490 (modify-phases %standard-phases
1491 (add-after 'unpack 'adjust-test-suite
1493 (substitute* "test/runtests.jl"
1494 ((".*lapack.*") "")))))))
1496 `(("julia-quaternions" ,julia-quaternions)))
1497 (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1498 (synopsis "Generic numerical linear algebra")
1499 (description "The purpose of this package is partly to extend linear algebra
1500 functionality in base to cover generic element types, e.g. @code{BigFloat} and
1501 @code{Quaternion}, and partly to be a place to experiment with fast linear
1502 algebra routines written in Julia (except for optimized BLAS).")
1503 (license license:expat)))
1505 (define-public julia-genericschur
1507 (name "julia-genericschur")
1513 (url "https://github.com/RalphAS/GenericSchur.jl")
1514 (commit (string-append "v" version))))
1515 (file-name (git-file-name name version))
1517 (base32 "0kklc2niylvynhq0v49kdmy58m9jmr5jxjf287k1wr9r81fya3sz"))))
1518 (build-system julia-build-system)
1521 (modify-phases %standard-phases
1522 (add-after 'unpack 'adjust-test-suite
1524 (substitute* "test/complex.jl"
1525 ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
1526 (("A = _example") "#A = _example")
1527 (("schurtest\\(A,20\\)") ""))
1528 (substitute* "test/runtests.jl"
1529 ;; Test errors relating to liblapack.so
1530 ((".*complex\\.jl.*") "")
1531 ((".*real\\.jl.*") "")
1532 ;; GenericSVD is deprecated upstream
1533 ((".*gordschur\\.jl.*") "")))))))
1534 (home-page "https://github.com/RalphAS/GenericSchur.jl")
1535 (synopsis "Schur decomposition of matrices with generic element types")
1536 (description "The Schur decomposition is the workhorse for eigensystem
1537 analysis of dense matrices. The diagonal eigen-decomposition of normal
1538 (especially Hermitian) matrices is an important special case, but for non-normal
1539 matrices the Schur form is often more useful.")
1540 (license license:expat)))
1542 (define-public julia-graphics
1544 (name "julia-graphics")
1550 (url "https://github.com/JuliaGraphics/Graphics.jl")
1551 (commit (string-append "v" version))))
1552 (file-name (git-file-name name version))
1554 (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn"))))
1555 (build-system julia-build-system)
1557 `(("julia-colors" ,julia-colors)
1558 ("julia-nanmath" ,julia-nanmath)))
1559 (home-page "https://github.com/JuliaGraphics/Graphics.jl")
1560 (synopsis "Base graphics in Julia")
1561 (description "@code{Graphics.jl} is an abstraction layer for graphical
1562 operations in Julia.")
1563 (license license:expat)))
1565 (define-public julia-gumbo
1567 (name "julia-gumbo")
1573 (url "https://github.com/JuliaWeb/Gumbo.jl")
1574 (commit (string-append "v" version))))
1575 (file-name (git-file-name name version))
1577 (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
1578 (build-system julia-build-system)
1580 `(("julia-abstracttrees" ,julia-abstracttrees)
1581 ("julia-gumbo-jll" ,julia-gumbo-jll)))
1582 (home-page "https://github.com/JuliaWeb/Gumbo.jl")
1583 (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
1584 (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
1585 library for parsing HTML.")
1586 (license license:expat)))
1588 (define-public julia-http
1596 (url "https://github.com/JuliaWeb/HTTP.jl")
1597 (commit (string-append "v" version))))
1598 (file-name (git-file-name name version))
1600 (base32 "0ij0yci13c46p92m4zywvcs02nn8pm0abyfffiyhxvva6hq48lyl"))))
1601 (build-system julia-build-system)
1604 (modify-phases %standard-phases
1605 (add-before 'install 'disable-network-tests
1607 (substitute* "test/runtests.jl"
1608 (("\"async.jl") "# \"async.jl")
1609 (("\"client.jl") "# \"client.jl"))
1610 (substitute* "test/aws4.jl"
1611 (("@testset.*HTTP.request with AWS authentication.*" all)
1612 (string-append all "return\n")))
1613 (substitute* "test/insert_layers.jl"
1614 (("@testset.*Inserted final layer runs handler.*" all)
1615 (string-append all "return\n")))
1616 (substitute* "test/multipart.jl"
1617 (("@testset \"Setting of Content-Type.*" all)
1618 (string-append all "return\n"))
1619 (("@testset \"Deprecation of .*" all)
1620 (string-append all "return\n")))
1621 (substitute* "test/websockets.jl"
1622 (("@testset.*External Host.*" all)
1623 (string-append all "return\n")))
1624 (substitute* "test/messages.jl"
1625 (("@testset.*Read methods.*" all)
1626 (string-append all "return\n"))
1627 (("@testset.*Body - .*" all)
1628 (string-append all "return\n"))
1629 (("@testset.*Write to file.*" all)
1630 (string-append all "return\n")))
1633 `(("julia-inifile" ,julia-inifile)
1634 ("julia-mbedtls" ,julia-mbedtls)
1635 ("julia-uris" ,julia-uris)))
1636 ;; required for tests
1638 `(("julia-json" ,julia-json)
1639 ("julia-bufferedstreams" ,julia-bufferedstreams)))
1640 (home-page "https://juliaweb.github.io/HTTP.jl/")
1641 (synopsis "HTTP support for Julia")
1642 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
1643 implementing both a client and a server.")
1644 (license license:expat)))
1646 (define-public julia-identityranges
1648 (name "julia-identityranges")
1654 (url "https://github.com/JuliaArrays/IdentityRanges.jl")
1655 (commit (string-append "v" version))))
1656 (file-name (git-file-name name version))
1658 (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml"))))
1659 (build-system julia-build-system)
1661 `(("julia-offsetarrays" ,julia-offsetarrays)))
1662 (home-page "https://github.com/JuliaArrays/IdentityRanges.jl")
1663 (synopsis "Ranges that preserve indices of views")
1664 (description "@code{IdentityRanges} are Julia-language a helper type for
1665 creating \"views\" of arrays. They are a custom type of AbstractUnitRange that
1666 makes it easy to preserve the indices of array views. The key property of an
1667 @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the
1668 type/package), and that they support arbitrary start/stop indices (i.e., not
1669 just starting at 1).")
1670 (license license:expat)))
1672 (define-public julia-ifelse
1674 (name "julia-ifelse")
1680 (url "https://github.com/sciml/ifelse.jl")
1681 (commit (string-append "v" version))))
1682 (file-name (git-file-name name version))
1684 (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
1685 (build-system julia-build-system)
1686 (home-page "https://github.com/sciml/ifelse.jl")
1687 (synopsis "Function form of the if-else conditional statement")
1688 (description "This package provides a convenient function form of the
1689 conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
1690 (license license:expat)))
1692 (define-public julia-imageaxes
1694 (name "julia-imageaxes")
1700 (url "https://github.com/JuliaImages/ImageAxes.jl")
1701 (commit (string-append "v" version))))
1702 (file-name (git-file-name name version))
1704 (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd"))))
1705 (build-system julia-build-system)
1707 `(("julia-axisarrays" ,julia-axisarrays)
1708 ("julia-imagecore" ,julia-imagecore)
1709 ("julia-reexport" ,julia-reexport)
1710 ("julia-simpletraits" ,julia-simpletraits)))
1712 `(("julia-unitful" ,julia-unitful)))
1713 (home-page "https://github.com/JuliaImages/ImageAxes.jl")
1714 (synopsis "Julia package for giving \"meaning\" to the axes of an image")
1715 (description "This small package supports the representation of images as
1716 @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with
1717 such arrays easy via traits.")
1718 (license license:expat)))
1720 (define-public julia-imagebase
1722 (name "julia-imagebase")
1728 (url "https://github.com/JuliaImages/ImageBase.jl")
1729 (commit (string-append "v" version))))
1730 (file-name (git-file-name name version))
1732 (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
1733 (build-system julia-build-system)
1735 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1737 `(("julia-imagecore" ,julia-imagecore)
1738 ("julia-reexport" ,julia-reexport)))
1740 ; `(("julia-imagemagick" ,julia-imagemagick)
1741 ; ("julia-offsetarrays" ,julia-offsetarrays)
1742 ; ("julia-testimages" ,julia-testimages)))
1743 (home-page "https://github.com/JuliaImages/ImageBase.jl")
1744 (synopsis "Wrapper package around ImageCore")
1745 (description "This is a twin package to @code{ImageCore} with functions that
1746 are used among many of the packages in JuliaImages. The main purpose of this
1747 package is to reduce unnecessary compilation overhead from external
1749 (license license:expat)))
1751 (define-public julia-imagecore
1753 (name "julia-imagecore")
1759 (url "https://github.com/JuliaImages/ImageCore.jl")
1760 (commit (string-append "v" version))))
1761 (file-name (git-file-name name version))
1763 (base32 "0d844lrilw7zjpax8zr5272a9s292wg4qk53mvm0n88yai598zd6"))))
1764 (build-system julia-build-system)
1766 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1768 `(("julia-abstractffts" ,julia-abstractffts)
1769 ("julia-colors" ,julia-colors)
1770 ("julia-colorvectorspace" ,julia-colorvectorspace)
1771 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
1772 ("julia-graphics" ,julia-graphics)
1773 ("julia-mappedarrays" ,julia-mappedarrays)
1774 ("julia-mosaicviews" ,julia-mosaicviews)
1775 ("julia-offsetarrays" ,julia-offsetarrays)
1776 ("julia-paddedviews" ,julia-paddedviews)
1777 ("julia-reexport" ,julia-reexport)))
1779 ; `(("julia-aqua" ,julia-aqua)
1780 ; ("julia-colorvectorspace" ,julia-colorvectorspace)
1781 ; ("julia-documenter" ,julia-documenter)
1782 ; ("julia-fftw" ,julia-fftw)
1783 ; ("julia-imageinterminal" ,julia-imageinterminal)
1784 ; ("julia-imagemagick" ,julia-imagemagick)
1785 ; ("julia-referencetests" ,julia-referencetests)
1786 ; ("julia-statistics" ,julia-statistics)))
1787 (home-page "https://github.com/JuliaImages/ImageCore.jl")
1788 (synopsis "Julia types for representing images")
1789 (description "@code{ImageCore} is the lowest-level component of the system
1790 of packages designed to support image processing and computer vision.")
1791 (license license:expat)))
1793 (define-public julia-imageinterminal
1795 (name "julia-imageinterminal")
1801 (url "https://github.com/JuliaImages/ImageInTerminal.jl")
1802 (commit (string-append "v" version))))
1803 (file-name (git-file-name name version))
1805 (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
1806 (build-system julia-build-system)
1808 `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
1810 `(("julia-crayons" ,julia-crayons)
1811 ("julia-imagebase" ,julia-imagebase)
1812 ("julia-imagecore" ,julia-imagecore)
1813 ("julia-requires" ,julia-requires)))
1815 ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations)
1816 ; ("julia-imagemagick" ,julia-imagemagick)
1817 ; ("julia-imagetransformations" ,julia-imagetransformations)
1818 ; ("julia-offsetarrays" ,julia-offsetarrays)
1819 ; ("julia-referencetests" ,julia-referencetests)
1820 ; ("julia-rotations" ,julia-rotations)
1821 ; ("julia-sparsearrays" ,julia-sparsearrays)
1822 ; ("julia-testimages" ,julia-testimages)))
1823 (home-page "https://github.com/JuliaImages/ImageInTerminal.jl")
1824 (synopsis "Julia package for displaying images in the terminal")
1825 (description "@code{ImageInTerminal.jl} is a drop-in package that once
1826 imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays
1827 (i.e. Images) are displayed in the interactive REPL. The displayed images will
1828 be downscaled to fit into the size of your active terminal session.")
1829 (license license:expat)))
1831 (define-public julia-imagemagick
1833 (name "julia-imagemagick")
1839 (url "https://github.com/JuliaIO/ImageMagick.jl")
1840 (commit (string-append "v" version))))
1841 (file-name (git-file-name name version))
1843 (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
1844 (build-system julia-build-system)
1847 (modify-phases %standard-phases
1848 (add-after 'unpack 'skip-failing-test
1850 ;; These tests try to download from the imagemagick.org
1851 (substitute* "test/runtests.jl"
1852 ((".*readremote\\.jl.*") ""))
1853 ;; Tests with the color gray are hard.
1854 (substitute* "test/constructed_images.jl"
1855 (("test (b == aa)" _ test) (string-append "test_nowarn " test))
1856 (("test (B == map)" _ test) (string-append "test_nowarn " test)))
1859 `(("julia-fileio" ,julia-fileio)
1860 ("julia-imagecore" ,julia-imagecore)
1861 ("julia-imagemagick-jll" ,julia-imagemagick-jll)))
1863 `(("julia-colors" ,julia-colors)
1864 ("julia-colorvectorspace" ,julia-colorvectorspace)
1865 ("julia-imagemetadata" ,julia-imagemetadata)
1866 ("julia-imageshow" ,julia-imageshow)
1867 ("julia-imagetransformations" ,julia-imagetransformations)
1868 ("julia-indirectarrays" ,julia-indirectarrays)
1869 ("julia-offsetarrays" ,julia-offsetarrays)
1870 ("julia-zipfile" ,julia-zipfile)))
1871 (home-page "https://github.com/JuliaIO/ImageMagick.jl")
1872 (synopsis "Thin wrapper for ImageMagick")
1873 (description "This package provides a wrapper around ImageMagick version 6.
1874 It was split off from @code{Images.jl} to make image I/O more modular.")
1875 (license license:expat)))
1877 (define-public julia-imagemetadata
1879 (name "julia-imagemetadata")
1885 (url "https://github.com/JuliaImages/ImageMetadata.jl")
1886 (commit (string-append "v" version))))
1887 (file-name (git-file-name name version))
1889 (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1"))))
1890 (build-system julia-build-system)
1892 `(("julia-axisarrays" ,julia-axisarrays)
1893 ("julia-imageaxes" ,julia-imageaxes)
1894 ("julia-imagecore" ,julia-imagecore)
1895 ("julia-indirectarrays" ,julia-indirectarrays)))
1897 `(("julia-offsetarrays" ,julia-offsetarrays)
1898 ("julia-simpletraits" ,julia-simpletraits)
1899 ("julia-unitful" ,julia-unitful)))
1900 (home-page "https://github.com/JuliaImages/ImageMetadata.jl")
1901 (synopsis "Julia package for images having metadata")
1902 (description "@code{ImageMetadata} is a simple package providing utilities
1903 for working with images that have metadata attached. For example, you might
1904 want to associate an image with the date on which the picture was taken, or an
1905 MRI scan with patient data, or an astronomical image with sky coordinates and
1906 information about the detector used to acquire the image.")
1907 (license license:expat)))
1909 (define-public julia-imageshow
1911 (name "julia-imageshow")
1917 (url "https://github.com/JuliaImages/ImageShow.jl")
1918 (commit (string-append "v" version))))
1919 (file-name (git-file-name name version))
1921 (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
1922 (build-system julia-build-system)
1924 `(#:tests? #f)) ; cycle with ImageMagick.jl.
1926 `(("julia-fileio" ,julia-fileio)
1927 ("julia-imagebase" ,julia-imagebase)
1928 ("julia-imagecore" ,julia-imagecore)
1929 ("julia-offsetarrays" ,julia-offsetarrays)
1930 ("julia-stackviews" ,julia-stackviews)))
1932 ; `(("julia-imagedistances" ,julia-imagedistances)
1933 ; ("julia-imagemagick" ,julia-imagemagick)
1934 ; ("julia-suppressor" ,julia-suppressor)
1935 ; ("julia-testimages" ,julia-testimages)))
1936 (home-page "https://github.com/JuliaImages/ImageShow.jl")
1938 "Inline graphical display of images in Julia graphical environments")
1939 (description "This package implements image @code{show} methods suitable
1940 for graphical platforms such as IJulia. It is intended to provide convenient
1941 inline presentation of greyscale or color images.")
1942 (license license:expat)))
1944 (define-public julia-imagetransformations
1946 (name "julia-imagetransformations")
1952 (url "https://github.com/JuliaImages/ImageTransformations.jl")
1953 (commit (string-append "v" version))))
1954 (file-name (git-file-name name version))
1956 (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
1957 (build-system julia-build-system)
1959 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1961 `(("julia-axisalgorithms" ,julia-axisalgorithms)
1962 ("julia-colorvectorspace" ,julia-colorvectorspace)
1963 ("julia-coordinatetransformations" ,julia-coordinatetransformations)
1964 ("julia-identityranges" ,julia-identityranges)
1965 ("julia-imagecore" ,julia-imagecore)
1966 ("julia-interpolations" ,julia-interpolations)
1967 ("julia-offsetarrays" ,julia-offsetarrays)
1968 ("julia-rotations" ,julia-rotations)
1969 ("julia-staticarrays" ,julia-staticarrays)))
1971 ; `(("julia-imagemagick" ,julia-imagemagick)
1972 ; ("julia-referencetests" ,julia-referencetests)
1973 ; ("julia-testimages" ,julia-testimages)))
1974 (home-page "https://github.com/JuliaImages/ImageTransformations.jl")
1975 (synopsis "Geometric transformations on images for Julia")
1976 (description "This package provides support for image resizing, image
1977 rotation, and other spatial transformations of arrays.")
1978 (license license:expat)))
1980 (define-public julia-indexing
1982 (name "julia-indexing")
1988 (url "https://github.com/andyferris/Indexing.jl")
1989 (commit (string-append "v" version))))
1990 (file-name (git-file-name name version))
1992 (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx"))))
1993 (build-system julia-build-system)
1994 (home-page "https://github.com/andyferris/Indexing.jl")
1995 (synopsis "Generalized indexing for Julia")
1996 (description "This package defines functions for getting multiple indices
1997 out of dictionaries, tuples, etc, extending this ability beyond
1998 @code{AbstractArray}.")
1999 (license license:expat)))
2001 (define-public julia-indirectarrays
2003 (name "julia-indirectarrays")
2009 (url "https://github.com/JuliaArrays/IndirectArrays.jl")
2010 (commit (string-append "v" version))))
2011 (file-name (git-file-name name version))
2013 (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s"))))
2014 (build-system julia-build-system)
2016 `(("julia-colors" ,julia-colors)
2017 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2018 ("julia-mappedarrays" ,julia-mappedarrays)))
2019 (home-page "https://github.com/JuliaArrays/IndirectArrays.jl")
2020 (synopsis "Julia implementation of indexed arrays")
2021 (description "An @code{IndirectArray} is one that encodes data using a
2022 combination of an @code{index} and a @code{value} table. Each element is
2023 assigned its own index, which is used to retrieve the value from the
2024 @code{value} table. Among other uses, @code{IndirectArrays} can represent
2025 indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
2026 (license license:expat)))
2028 (define-public julia-inifile
2030 (name "julia-inifile")
2036 (url "https://github.com/JuliaIO/IniFile.jl")
2037 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
2038 (file-name (git-file-name name version))
2040 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
2041 (build-system julia-build-system)
2042 (home-page "https://github.com/JuliaIO/IniFile.jl")
2043 (synopsis "Reading Windows-style INI files")
2044 (description "This is a Julia package that defines an IniFile type that
2045 interfaces with @file{.ini} files.")
2046 (license license:expat)))
2048 (define-public julia-interpolations
2050 (name "julia-interpolations")
2056 (url "https://github.com/JuliaMath/Interpolations.jl")
2057 (commit (string-append "v" version))))
2058 (file-name (git-file-name name version))
2060 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
2061 (build-system julia-build-system)
2063 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2064 ("julia-offsetarrays" ,julia-offsetarrays)
2065 ("julia-ratios" ,julia-ratios)
2066 ("julia-requires" ,julia-requires)
2067 ("julia-staticarrays" ,julia-staticarrays)
2068 ("julia-woodburymatrices" ,julia-woodburymatrices)))
2070 `(("julia-dualnumbers" ,julia-dualnumbers)
2071 ("julia-forwarddiff" ,julia-forwarddiff)
2072 ("julia-offsetarrays" ,julia-offsetarrays)
2073 ("julia-unitful" ,julia-unitful)
2074 ("julia-zygote" ,julia-zygote)))
2075 (home-page "https://github.com/JuliaMath/Interpolations.jl")
2076 (synopsis "Continuous interpolation of discrete datasets")
2077 (description "This package implements a variety of interpolation schemes for
2078 the Julia language. It has the goals of ease-of-use, broad algorithmic support,
2079 and exceptional performance.")
2080 (license license:expat)))
2082 (define-public julia-intervalsets
2084 (name "julia-intervalsets")
2090 (url "https://github.com/JuliaMath/IntervalSets.jl")
2091 (commit (string-append "v" version))))
2092 (file-name (git-file-name name version))
2094 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
2095 (build-system julia-build-system)
2097 `(("julia-ellipsisnotation" ,julia-ellipsisnotation)))
2099 `(("julia-offsetarrays" ,julia-offsetarrays)))
2100 (home-page "https://github.com/JuliaMath/IntervalSets.jl")
2101 (synopsis "Interval Sets for Julia")
2102 (description "This package is intended to implement a \"minimal\" foundation
2103 for intervals upon which other packages might build. In particular, we
2104 encourage type-piracy for the reason that only one interval package can
2105 unambiguously define the @code{..} and @code{±} operators.")
2106 (license license:expat)))
2108 (define-public julia-invertedindices
2110 (name "julia-invertedindices")
2116 (url "https://github.com/mbauman/InvertedIndices.jl")
2117 (commit (string-append "v" version))))
2118 (file-name (git-file-name name version))
2120 (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46"))))
2121 (build-system julia-build-system)
2123 `(("julia-offsetarrays" ,julia-offsetarrays)))
2124 (home-page "https://github.com/mbauman/InvertedIndices.jl")
2125 (synopsis "Index type that allows for inverted selections")
2126 (description "This package just exports one type: the @code{InvertedIndex},
2127 or @code{Not} for short. It can wrap any supported index type and may be used
2128 as an index into any @code{AbstractArray} subtype, including OffsetArrays.")
2129 (license license:expat)))
2131 (define-public julia-iocapture
2133 (name "julia-iocapture")
2139 (url "https://github.com/JuliaDocs/IOCapture.jl")
2140 (commit (string-append "v" version))))
2141 (file-name (git-file-name name version))
2143 (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb"))))
2144 (build-system julia-build-system)
2145 (home-page "https://github.com/JuliaDocs/IOCapture.jl")
2146 (synopsis "Capture standard output and error streams")
2147 (description "This package provides the @code{IOCapture.capture(f)}
2148 function, which captures the standard output and standard error, and returns it
2149 as a string together with the return value.")
2150 (license license:expat)))
2152 (define-public julia-irtools
2154 (name "julia-irtools")
2160 (url "https://github.com/FluxML/IRTools.jl")
2161 (commit (string-append "v" version))))
2162 (file-name (git-file-name name version))
2164 (base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y"))))
2166 '(#:tests? #f)) ;require Documenter, not packaged yet
2167 (build-system julia-build-system)
2169 `(("julia-macrotools" ,julia-macrotools)))
2170 (home-page "https://github.com/FluxML/IRTools.jl")
2171 (synopsis "Simple and flexible IR format")
2172 (description "This package provides a simple and flexible IR format,
2173 expressive enough to work with both lowered and typed Julia code, as well as
2174 external IRs. It can be used with Julia metaprogramming tools such as
2176 (license license:expat)))
2178 (define-public julia-iteratorinterfaceextensions
2180 (name "julia-iteratorinterfaceextensions")
2186 (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2187 (commit (string-append "v" version))))
2188 (file-name (git-file-name name version))
2190 (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"))))
2191 (build-system julia-build-system)
2192 (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2193 (synopsis "Traits for Julia iterators")
2194 (description "IteratorInterfaceExtensions defines a small number of
2195 extensions to the iterator interface.")
2196 (license license:expat)))
2198 (define-public julia-itertools
2200 (name "julia-itertools")
2206 (url "https://github.com/JuliaCollections/IterTools.jl")
2207 (commit (string-append "v" version))))
2208 (file-name (git-file-name name version))
2210 (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq"))))
2211 (build-system julia-build-system)
2212 (home-page "https://github.com/JuliaCollections/IterTools.jl")
2213 (synopsis "Common functional iterator patterns")
2215 "Common functional iterator patterns (formerly @code{Iterators.jl}).")
2216 (license license:expat)))
2218 (define-public julia-json
2226 (url "https://github.com/JuliaIO/JSON.jl")
2227 (commit (string-append "v" version))))
2228 (file-name (git-file-name name version))
2230 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
2231 (build-system julia-build-system)
2233 `(("julia-datastructures" ,julia-datastructures)
2234 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2235 ("julia-parsers" ,julia-parsers)
2236 ("julia-offsetarrays" ,julia-offsetarrays)))
2237 (home-page "https://github.com/JuliaIO/JSON.jl")
2238 (synopsis "JSON parsing and printing library for Julia")
2239 (description "@code{JSON.jl} is a pure Julia module which supports parsing
2240 and printing JSON documents.")
2241 (license license:expat)))
2243 (define-public julia-json3
2245 (name "julia-json3")
2251 (url "https://github.com/quinnj/JSON3.jl")
2252 (commit (string-append "v" version))))
2253 (file-name (git-file-name name version))
2255 (base32 "1mc3byqm6ygg4mjpdrx6grkr4gn06p25nr7050jgq1k2cf06iqba"))))
2256 (build-system julia-build-system)
2258 `(("julia-parsers" ,julia-parsers)
2259 ("julia-structtypes" ,julia-structtypes)))
2260 (home-page "https://github.com/quinnj/JSON3.jl")
2261 (synopsis "JSON package for Julia")
2262 (description "This package provides another JSON package for Julia, with a
2263 focus on speed and slick struct mapping.")
2264 (license license:expat)))
2266 (define-public julia-lazyarrays
2268 (name "julia-lazyarrays")
2274 (url "https://github.com/JuliaArrays/LazyArrays.jl")
2275 (commit (string-append "v" version))))
2276 (file-name (git-file-name name version))
2278 (base32 "0zm1ihvi8v2823ap59ajqcs46s5z0nai8l70n51f6j9dzp8lc3cy"))))
2279 (build-system julia-build-system)
2281 `(("julia-arraylayouts" ,julia-arraylayouts)
2282 ("julia-fillarrays" ,julia-fillarrays)
2283 ("julia-macrotools" ,julia-macrotools)
2284 ("julia-matrixfactorizations" ,julia-matrixfactorizations)
2285 ("julia-staticarrays" ,julia-staticarrays)))
2287 `(("julia-tracker" ,julia-tracker)))
2288 (home-page "https://github.com/JuliaArrays/LazyArrays.jl")
2289 (synopsis "Lazy arrays and linear algebra")
2290 (description "This package supports lazy analogues of array operations like
2291 @code{vcat}, @code{hcat}, and multiplication. This helps with the
2292 implementation of matrix-free methods for iterative solvers.")
2293 (license license:expat)))
2295 (define-public julia-logexpfunctions
2297 (name "julia-logexpfunctions")
2303 (url "https://github.com/JuliaStats/LogExpFunctions.jl")
2304 (commit (string-append "v" version))))
2305 (file-name (git-file-name name version))
2307 (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n"))))
2308 (build-system julia-build-system)
2310 `(("julia-docstringextensions" ,julia-docstringextensions)))
2312 `(("julia-offsetarrays" ,julia-offsetarrays)))
2313 (home-page "https://github.com/JuliaStats/LogExpFunctions.jl")
2314 (synopsis "Special functions based on @code{log} and @code{exp}")
2315 (description "Various special functions based on log and exp moved from
2316 @code{StatsFuns.jl} into a separate package, to minimize dependencies. These
2317 functions only use native Julia code, so there is no need to depend on
2318 @code{librmath} or similar libraries.")
2319 (license license:expat)))
2321 (define-public julia-macrotools
2323 (name "julia-macrotools")
2329 (url "https://github.com/FluxML/MacroTools.jl")
2330 (commit (string-append "v" version))))
2331 (file-name (git-file-name name version))
2333 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
2334 (build-system julia-build-system)
2335 (home-page "https://fluxml.ai/MacroTools.jl")
2336 (synopsis "Tools for working with Julia code and expressions")
2337 (description "This library provides tools for working with Julia code and
2338 expressions. This includes a template-matching system and code-walking tools
2339 that let you do deep transformations of code.")
2340 (license license:expat)))
2342 (define-public julia-mappedarrays
2344 (name "julia-mappedarrays")
2350 (url "https://github.com/JuliaArrays/MappedArrays.jl")
2351 (commit (string-append "v" version))))
2352 (file-name (git-file-name name version))
2354 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
2355 (build-system julia-build-system)
2357 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
2359 `(("julia-colortypes" ,julia-colortypes)
2360 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2361 ("julia-offsetarrays" ,julia-offsetarrays)))
2362 (home-page "https://github.com/JuliaArrays/MappedArrays.jl")
2363 (synopsis "Lazy in-place transformations of arrays")
2364 (description "This package implements \"lazy\" in-place elementwise
2365 transformations of arrays for the Julia programming language. Explicitly, it
2366 provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a
2367 specified (but arbitrary) function f, without ever having to compute M
2368 explicitly (in the sense of allocating storage for M). The name of the package
2369 comes from the fact that @code{M == map(f, A)}.")
2370 (license license:expat)))
2372 (define-public julia-matrixfactorizations
2374 (name "julia-matrixfactorizations")
2380 (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2381 (commit (string-append "v" version))))
2382 (file-name (git-file-name name version))
2384 (base32 "14c6w1vhyf4pi4454pdp6ryczsxn9pgjg99fg9bkdj03xg5fsxb8"))))
2385 (build-system julia-build-system)
2388 (modify-phases %standard-phases
2389 (add-after 'unpack 'skip-failing-test
2391 ;; Tests with math functions are hard.
2392 (substitute* "test/test_ul.jl"
2393 (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
2394 ;; Also skip the REPL test.
2395 (("test String") "test_nowarn String"))
2398 `(("julia-arraylayouts" ,julia-arraylayouts)))
2399 (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2400 (synopsis "Julia package to contain non-standard matrix factorizations")
2401 (description "A Julia package to contain non-standard matrix factorizations.
2402 At the moment it implements the QL, RQ, and UL factorizations, a combined
2403 Cholesky factorization with inverse, and polar decompositions. In the future it
2404 may include other factorizations such as the LQ factorization.")
2405 (license license:expat)))
2407 (define-public julia-mbedtls
2409 (name "julia-mbedtls")
2415 (url "https://github.com/JuliaLang/MbedTLS.jl")
2416 (commit (string-append "v" version))))
2417 (file-name (git-file-name name version))
2419 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
2420 (build-system julia-build-system)
2423 (modify-phases %standard-phases
2424 (add-before 'install 'disable-network-tests
2425 ;; Tries to connect to httpbin.org
2427 (substitute* "test/runtests.jl"
2428 (("testhost =") "return #"))
2430 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
2431 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
2432 (synopsis "Apache's mbed TLS library wrapper")
2433 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
2434 TLS} and cryptography C library for Julia.")
2435 (license license:expat)))
2437 (define-public julia-measures
2439 (name "julia-measures")
2445 (url "https://github.com/JuliaGraphics/Measures.jl")
2446 (commit (string-append "v" version))))
2447 (file-name (git-file-name name version))
2449 (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l"))))
2450 (build-system julia-build-system)
2451 (home-page "https://github.com/JuliaGraphics/Measures.jl")
2452 (synopsis "Unified measure and coordinates types")
2453 (description "This library generalizes and unifies the notion of measures
2454 used in Compose, Compose3D, and Escher. It allows building up and representing
2455 expressions involving differing types of units that are then evaluated,
2456 resolving them into absolute units.")
2457 (license license:expat)))
2459 (define-public julia-missings
2461 (name "julia-missings")
2467 (url "https://github.com/JuliaData/Missings.jl")
2468 (commit (string-append "v" version))))
2469 (file-name (git-file-name name version))
2471 (base32 "131ma44yvswvj85jdjhm37frzfz46cc60lwj65a9jcmgc77dshsm"))))
2472 (build-system julia-build-system)
2474 `(("julia-dataapi" ,julia-dataapi)))
2475 (home-page "https://github.com/JuliaData/Missings.jl")
2476 (synopsis "Additional missing value support for Julia")
2477 (description "This package provides additional functionality for working
2478 with @code{missing} values in Julia.")
2479 (license license:expat)))
2481 (define-public julia-mocking
2483 (name "julia-mocking")
2489 (url "https://github.com/invenia/Mocking.jl")
2490 (commit (string-append "v" version))))
2491 (file-name (git-file-name name version))
2493 (base32 "10jz716v6i3gpd403rmcrip6cncjl9lqr12cdl321x1994a5g8ck"))))
2494 (build-system julia-build-system)
2496 `(("julia-exprtools" ,julia-exprtools)))
2497 (home-page "https://github.com/invenia/Mocking.jl")
2498 (synopsis "Overload Julia function calls")
2499 (description "The purpose of this package is to allow Julia function calls
2500 to be temporarily overloaded for the purpose of testing.")
2501 (license license:expat)))
2503 (define-public julia-mosaicviews
2505 (name "julia-mosaicviews")
2511 (url "https://github.com/JuliaArrays/MosaicViews.jl")
2512 (commit (string-append "v" version))))
2513 (file-name (git-file-name name version))
2515 (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
2516 (build-system julia-build-system)
2518 `(#:tests? #f)) ; Cycle with ImageCore.jl
2520 `(("julia-mappedarrays" ,julia-mappedarrays)
2521 ("julia-paddedviews" ,julia-paddedviews)
2522 ("julia-stackviews" ,julia-stackviews)))
2524 ; `(("julia-colorvectorspace" ,julia-colorvectorspace)
2525 ; ("julia-imagecore" ,julia-imagecore)))
2526 (home-page "https://github.com/JuliaArrays/MosaicViews.jl")
2528 "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices")
2529 (description "When visualizing images, it is not uncommon to provide a 2D
2530 view of different image sources. For example, comparing multiple images of
2531 different sizes, getting a preview of machine learning dataset. This package
2532 aims to provide easy-to-use tools for such tasks.")
2533 (license license:expat)))
2535 (define-public julia-msgpack
2537 (name "julia-msgpack")
2543 (url "https://github.com/JuliaIO/MsgPack.jl")
2544 (commit (string-append "v" version))))
2545 (file-name (git-file-name name version))
2547 (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
2548 (build-system julia-build-system)
2549 (home-page "https://github.com/JuliaIO/MsgPack.jl")
2550 (synopsis "Julia MsgPack implementation")
2551 (description "@code{MsgPack.jl} is a MessagePack implementation in pure
2552 Julia, with type-driven, overloadable packing/unpacking functionality.")
2553 (license license:expat)))
2555 (define-public julia-mutablearithmetics
2557 (name "julia-mutablearithmetics")
2563 (url "https://github.com/jump-dev/MutableArithmetics.jl")
2564 (commit (string-append "v" version))))
2565 (file-name (git-file-name name version))
2567 (base32 "1zjfq5sh0rc941pbc9kvnr6a2lpr4yd276mw62vbncbz9jg52rrg"))))
2568 (build-system julia-build-system)
2570 `(("julia-offsetarrays" ,julia-offsetarrays)))
2571 (home-page "https://github.com/jump-dev/MutableArithmetics.jl")
2572 (synopsis "Interface for arithmetics on mutable types in Julia")
2573 (description "MutableArithmetics is a Julia package which allows:
2575 @item mutable types to implement mutable arithmetics
2576 @item algorithms that could exploit mutable arithmetics to exploit them while
2577 still being completely generic
2579 (license license:mpl2.0)))
2581 (define-public julia-nanmath
2583 (name "julia-nanmath")
2589 (url "https://github.com/mlubin/NaNMath.jl")
2590 (commit (string-append "v" version))))
2591 (file-name (git-file-name name version))
2593 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
2594 (build-system julia-build-system)
2595 (home-page "https://github.com/mlubin/NaNMath.jl")
2596 (synopsis "Implementations of basic math functions")
2597 (description "Implementations of basic math functions which return
2598 @code{NaN} instead of throwing a @code{DomainError}.")
2599 (license license:expat)))
2601 (define-public julia-nlsolversbase
2603 (name "julia-nlsolversbase")
2609 (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2610 (commit (string-append "v" version))))
2611 (file-name (git-file-name name version))
2613 (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98"))))
2614 (build-system julia-build-system)
2616 `(("julia-diffresults" ,julia-diffresults)
2617 ("julia-finitediff" ,julia-finitediff)
2618 ("julia-forwarddiff" ,julia-forwarddiff)))
2620 `(("julia-optimtestproblems" ,julia-optimtestproblems)
2621 ("julia-recursivearraytools" ,julia-recursivearraytools)))
2622 (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2623 (synopsis "Optimization and equation solver software in JuliaNLSolvers")
2624 (description "This package aims at establishing common ground for Optim.jl,
2625 LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to
2626 hold objective related callables, information about the objectives, and an
2627 interface to interact with these types.")
2628 (license license:expat)))
2630 (define-public julia-nnlib
2632 (name "julia-nnlib")
2638 (url "https://github.com/FluxML/NNlib.jl")
2639 (commit (string-append "v" version))))
2640 (file-name (git-file-name name version))
2642 (base32 "0vp4kcn9ivkhmqgkyvnabcdqi6pv7ghbmjc1llkwv1kzhylyf86p"))))
2643 (build-system julia-build-system)
2645 `(#:tests? #f ; Test suite not updated for ChainRulesTestUtils-1.0.
2647 (modify-phases %standard-phases
2648 (add-after 'unpack 'drop-cuda-support
2650 (substitute* "test/runtests.jl"
2651 (("using CUDA") ""))
2652 (setenv "NNLIB_TEST_CUDA" "false"))))))
2654 `(("julia-adapt" ,julia-adapt)
2655 ("julia-chainrulescore" ,julia-chainrulescore)
2656 ("julia-requires" ,julia-requires)))
2658 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
2659 ("julia-stablerngs" ,julia-stablerngs)
2660 ("julia-zygote" ,julia-zygote)))
2661 (home-page "https://github.com/FluxML/NNlib.jl")
2662 (synopsis "Neural Network primitives with multiple backends")
2663 (description "This package will provide a library of functions useful for
2664 machine learning, such as softmax, sigmoid, convolutions and pooling. It
2665 doesn't provide any other \"high-level\" functionality like layers or AD.")
2666 (license license:expat)))
2668 (define-public julia-optimtestproblems
2670 (name "julia-optimtestproblems")
2676 (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2677 (commit (string-append "v" version))))
2678 (file-name (git-file-name name version))
2680 (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
2681 (build-system julia-build-system)
2683 `(#:julia-package-name "OptimTestProblems"))
2684 (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2685 (synopsis "Collection of optimization test problems")
2686 (description "The purpose of this package is to provide test problems for
2687 JuliaNLSolvers packages.")
2688 (license license:expat)))
2690 (define-public julia-orderedcollections
2692 (name "julia-orderedcollections")
2698 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
2699 (commit (string-append "v" version))))
2700 (file-name (git-file-name name version))
2702 (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
2703 (build-system julia-build-system)
2704 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
2705 (synopsis "Associative containers that preserve insertion order")
2706 (description "This package implements @code{OrderedDicts} and
2707 @code{OrderedSets}, which are similar to containers in base Julia. However,
2708 during iteration the @code{Ordered*} containers return items in the order in
2709 which they were added to the collection.")
2710 (license license:expat)))
2712 (define-public julia-offsetarrays
2714 (name "julia-offsetarrays")
2720 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
2721 (commit (string-append "v" version))))
2722 (file-name (git-file-name name version))
2724 (base32 "10mycjmjlp80c1bsdmk1hnb5hg81zqd2dcxyaa9p55ykla051a9q"))))
2725 (build-system julia-build-system)
2727 `(("julia-adapt" ,julia-adapt)))
2728 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
2729 (arguments '(#:tests? #f))
2730 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
2731 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
2732 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
2733 have arbitrary indices, similar to those found in some other programming
2734 languages like Fortran.")
2735 (license license:expat)))
2737 (define-public julia-paddedviews
2739 (name "julia-paddedviews")
2745 (url "https://github.com/JuliaArrays/PaddedViews.jl")
2746 (commit (string-append "v" version))))
2747 (file-name (git-file-name name version))
2749 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h"))))
2750 (build-system julia-build-system)
2752 '(#:tests? #f)) ;require Documenter, not packaged yet
2754 `(("julia-offsetarrays" ,julia-offsetarrays)))
2755 (home-page "https://github.com/JuliaArrays/PaddedViews.jl")
2756 (synopsis "Add virtual padding to the edges of an array")
2757 (description "@code{PaddedViews} provides a simple wrapper type,
2758 @code{PaddedView}, to add \"virtual\" padding to any array without copying data.
2759 Edge values not specified by the array are assigned a @code{fillvalue}.
2760 Multiple arrays may be \"promoted\" to have common indices using the
2761 @code{paddedviews} function.")
2762 (license license:expat)))
2764 (define-public julia-parameters
2766 (name "julia-parameters")
2772 (url "https://github.com/mauro3/Parameters.jl")
2773 (commit (string-append "v" version))))
2774 (file-name (git-file-name name version))
2776 (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
2777 (build-system julia-build-system)
2779 `(("julia-orderedcollections" ,julia-orderedcollections)
2780 ("julia-unpack" ,julia-unpack)))
2781 (home-page "https://github.com/mauro3/Parameters.jl")
2782 (synopsis "Numerical-model parameter helpers")
2783 (description "This package contains types with default field values, keyword
2784 constructors and (un-)pack macros. Keyword functions can be slow in Julia,
2785 however, the normal positional constructor is also provided and could be used in
2786 performance critical code.")
2787 (license license:expat)))
2789 (define-public julia-parsers
2791 (name "julia-parsers")
2797 (url "https://github.com/JuliaData/Parsers.jl")
2798 (commit (string-append "v" version))))
2799 (file-name (git-file-name name version))
2801 (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
2802 (build-system julia-build-system)
2803 (home-page "https://github.com/JuliaData/Parsers.jl")
2804 (synopsis "Fast parsing machinery for basic types in Julia")
2805 (description "@code{Parsers.jl} is a collection of type parsers and
2806 utilities for Julia.")
2807 (license license:expat)))
2809 (define-public julia-pdmats
2811 (name "julia-pdmats")
2817 (url "https://github.com/JuliaStats/PDMats.jl")
2818 (commit (string-append "v" version))))
2819 (file-name (git-file-name name version))
2821 (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0"))))
2822 (build-system julia-build-system)
2823 (home-page "https://github.com/JuliaStats/PDMats.jl")
2825 "Uniform Interface for positive definite matrices of various structures")
2826 (description "PDMats.jl supports efficient computation on positive definite
2827 matrices of various structures. In particular, it provides uniform interfaces
2828 to use positive definite matrices of various structures for writing generic
2829 algorithms, while ensuring that the most efficient implementation is used in
2830 actual computation.")
2831 (license license:expat)))
2833 (define-public julia-plotthemes
2835 (name "julia-plotthemes")
2841 (url "https://github.com/JuliaPlots/PlotThemes.jl")
2842 (commit (string-append "v" version))))
2843 (file-name (git-file-name name version))
2845 (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh"))))
2846 (build-system julia-build-system)
2848 `(("julia-plotutils" ,julia-plotutils)
2849 ("julia-requires" ,julia-requires)))
2850 (home-page "https://github.com/JuliaPlots/PlotThemes.jl")
2851 (synopsis "Themes for the Julia plotting package Plots.jl")
2853 "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.")
2854 (license license:expat)))
2856 (define-public julia-plotutils
2858 (name "julia-plotutils")
2864 (url "https://github.com/JuliaPlots/PlotUtils.jl")
2865 (commit (string-append "v" version))))
2866 (file-name (git-file-name name version))
2869 "1jimdkp590g7s33w7i431nn7mp1phjy9gdjs88zyqsmq5hxldacg"))))
2870 (build-system julia-build-system)
2872 `(("julia-colors" ,julia-colors)
2873 ("julia-colorschemes" ,julia-colorschemes)
2874 ("julia-reexport" ,julia-reexport)))
2876 `(("julia-stablerngs" ,julia-stablerngs)))
2877 (home-page "https://github.com/JuliaPlots/PlotUtils.jl")
2878 (synopsis "Helper algorithms for building plotting components")
2879 (description "This package contains generic helper algorithms for building
2880 plotting components.")
2881 (license license:expat)))
2883 (define-public julia-pooledarrays
2885 (name "julia-pooledarrays")
2891 (url "https://github.com/JuliaData/PooledArrays.jl")
2892 (commit (string-append "v" version))))
2893 (file-name (git-file-name name version))
2895 (base32 "0ihvhzkxdw4qf0i6sbrickhdcwkmlin9zyixxn9xvgzm8nc0iwqy"))))
2896 (build-system julia-build-system)
2898 `(("julia-dataapi" ,julia-dataapi)))
2899 (home-page "https://github.com/JuliaData/PooledArrays.jl")
2900 (synopsis "Pooled representation of arrays in Julia")
2901 (description "This package provides a pooled representation of arrays for
2902 purposes of compression when there are few unique elements.")
2903 (license license:expat)))
2905 (define-public julia-positivefactorizations
2907 (name "julia-positivefactorizations")
2913 (url "https://github.com/timholy/PositiveFactorizations.jl")
2914 (commit (string-append "v" version))))
2915 (file-name (git-file-name name version))
2917 (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23"))))
2918 (build-system julia-build-system)
2920 `(("julia-forwarddiff" ,julia-forwarddiff)
2921 ("julia-reversediff" ,julia-reversediff)))
2922 (home-page "https://github.com/timholy/PositiveFactorizations.jl")
2923 (synopsis "Positive-definite \"approximations\" to matrices")
2924 (description "@code{PositiveFactorizations} is a package for computing a
2925 positive definite matrix decomposition (factorization) from an arbitrary
2926 symmetric input. The motivating application is optimization (Newton or
2927 quasi-Newton methods), in which the canonical search direction -H/g (H being the
2928 Hessian and g the gradient) may not be a descent direction if H is not positive
2930 (license license:expat)))
2932 (define-public julia-preferences
2934 (name "julia-preferences")
2940 (url "https://github.com/JuliaPackaging/Preferences.jl")
2941 (commit (string-append "v" version))))
2942 (file-name (git-file-name name version))
2944 (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
2945 (build-system julia-build-system)
2947 `(#:tests? #f)) ; Tests try to mkdir /.julia
2948 (home-page "https://github.com/JuliaPackaging/Preferences.jl")
2949 (synopsis "Store configuration switches to TOML files")
2950 (description "The @code{Preferences} package provides an integrated way for
2951 packages to store configuration switches to persistent TOML files, and use those
2952 pieces of information at both run time and compile time in Julia. This enables
2953 the user to modify the behavior of a package, and have that choice reflected in
2954 everything from run time algorithm choice to code generation at compile time.")
2955 (license license:expat)))
2957 (define-public julia-prettytables
2959 (name "julia-prettytables")
2965 (url "https://github.com/ronisbr/PrettyTables.jl")
2966 (commit (string-append "v" version))))
2967 (file-name (git-file-name name version))
2969 (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
2970 (build-system julia-build-system)
2973 (modify-phases %standard-phases
2974 (add-after 'unpack 'skip-color-tests
2976 (substitute* "test/text_backend.jl"
2977 ((".*colors\\.jl.*") ""))
2980 `(("julia-crayons" ,julia-crayons)
2981 ("julia-formatting" ,julia-formatting)
2982 ("julia-reexport" ,julia-reexport)
2983 ("julia-tables" ,julia-tables)))
2984 (home-page "https://github.com/ronisbr/PrettyTables.jl")
2985 (synopsis "Print data in formatted tables")
2986 (description "This package has the purpose to print data in matrices in a
2987 human-readable format.")
2988 (license license:expat)))
2990 (define-public julia-quadmath
2992 (name "julia-quadmath")
2998 (url "https://github.com/JuliaMath/Quadmath.jl")
2999 (commit (string-append "v" version))))
3000 (file-name (git-file-name name version))
3002 (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
3003 (build-system julia-build-system)
3006 (modify-phases %standard-phases
3007 (add-after 'unpack 'hardcode-libmath-location
3008 (lambda* (#:key inputs #:allow-other-keys)
3009 (let ((gcclib (assoc-ref inputs "gcc:lib")))
3010 (substitute* "src/Quadmath.jl"
3011 (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
3012 (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
3015 `(("julia-requires" ,julia-requires)))
3017 `(("gcc:lib" ,gcc "lib")))
3019 `(("julia-specialfunctions" ,julia-specialfunctions)))
3020 (home-page "https://github.com/JuliaMath/Quadmath.jl")
3021 (synopsis "Float128 and libquadmath for the Julia language")
3022 (description "This is a Julia interface to @code{libquadmath}, providing a
3023 @code{Float128} type corresponding to the IEEE754 binary128 floating point
3025 (license license:expat)))
3027 (define-public julia-quaternions
3029 (name "julia-quaternions")
3035 (url "https://github.com/JuliaGeometry/Quaternions.jl")
3036 (commit (string-append "v" version))))
3037 (file-name (git-file-name name version))
3039 (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s"))))
3040 (build-system julia-build-system)
3042 `(("julia-dualnumbers" ,julia-dualnumbers)))
3043 (home-page "https://github.com/JuliaGeometry/Quaternions.jl")
3044 (synopsis "Quaternion and dual-quaternion functionality")
3045 (description "Quaternions are best known for their suitability as
3046 representations of 3D rotational orientation. They can also be viewed as an
3047 extension of complex numbers.")
3048 (license license:expat)))
3050 (define-public julia-queryoperators
3052 (name "julia-queryoperators")
3058 (url "https://github.com/queryverse/QueryOperators.jl")
3059 (commit (string-append "v" version))))
3060 (file-name (git-file-name name version))
3062 (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22"))))
3063 (build-system julia-build-system)
3065 `(("julia-datastructures" ,julia-datastructures)
3066 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3067 ("julia-tableshowutils" ,julia-tableshowutils)))
3068 (home-page "https://github.com/queryverse/QueryOperators.jl")
3069 (synopsis "Query operators for Julia")
3070 (description "This package contains the underlying query operators that are
3071 exposed to users in @code{Query.jl}.")
3072 (license license:expat)))
3074 (define-public julia-rangearrays
3076 (name "julia-rangearrays")
3082 (url "https://github.com/JuliaArrays/RangeArrays.jl")
3083 (commit (string-append "v" version))))
3084 (file-name (git-file-name name version))
3086 (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg"))))
3087 (build-system julia-build-system)
3088 (home-page "https://github.com/JuliaArrays/RangeArrays.jl")
3089 (synopsis "Array data structures with autogenerated columns")
3090 (description "The goal of RangeArrays is to provide efficient and convenient
3091 array data structures where the columns of the arrays are generated (on the fly)
3093 (license license:expat)))
3095 (define-public julia-ratios
3097 (name "julia-ratios")
3103 (url "https://github.com/timholy/Ratios.jl")
3104 (commit (string-append "v" version))))
3105 (file-name (git-file-name name version))
3107 (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh"))))
3108 (build-system julia-build-system)
3109 (home-page "https://github.com/timholy/Ratios.jl")
3110 (synopsis "Faster Rational-like types for Julia")
3111 (description "This package provides types similar to Julia's @code{Rational}
3112 type, which make some sacrifices but have better computational performance.")
3113 (license license:expat)))
3115 (define-public julia-recipesbase
3117 (name "julia-recipesbase")
3123 (url "https://github.com/JuliaPlots/RecipesBase.jl")
3124 (commit (string-append "v" version))))
3125 (file-name (git-file-name name version))
3127 (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
3128 (build-system julia-build-system)
3129 (home-page "https://github.com/JuliaPlots/RecipesBase.jl")
3130 (synopsis "Define transformation recipes on user types")
3131 (description "This package implements handy macros @code{@@recipe} and
3132 @code{@@series} which will define a custom transformation and attach attributes
3133 for user types. Its design is an attempt to simplify and generalize the summary
3134 and display of types and data from external packages. With this package it is
3135 possible to describe visualization routines that can be used as components in
3136 more complex visualizations.")
3137 (license license:expat)))
3139 (define-public julia-recipespipeline
3141 (name "julia-recipespipeline")
3147 (url "https://github.com/JuliaPlots/RecipesPipeline.jl")
3148 (commit (string-append "v" version))))
3149 (file-name (git-file-name name version))
3152 "0wa342m2d9k4kihr6g9i0wpbsipp0n11kh9jmlw4pc5msmz4rxr0"))))
3153 (build-system julia-build-system)
3155 `(#:tests? #f)) ; Cycle with Plots.jl.
3157 `(("julia-nanmath" ,julia-nanmath)
3158 ("julia-plotutils" ,julia-plotutils)
3159 ("julia-recipesbase" ,julia-recipesbase)))
3160 (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/")
3161 (synopsis "Utilities for processing recipes")
3162 (description "This package was factored out of @code{Plots.jl} to allow any
3163 other plotting package to use the recipe pipeline. In short, the extremely
3164 lightweight @code{RecipesBase.jl} package can be depended on by any package to
3165 define \"recipes\": plot specifications of user-defined types, as well as custom
3166 plot types. @code{RecipePipeline.jl} contains the machinery to translate these
3167 recipes to full specifications for a plot.")
3168 (license license:expat)))
3170 (define-public julia-recursivearraytools
3172 (name "julia-recursivearraytools")
3178 (url "https://github.com/SciML/RecursiveArrayTools.jl")
3179 (commit (string-append "v" version))))
3180 (file-name (git-file-name name version))
3182 (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
3183 (build-system julia-build-system)
3185 `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
3187 `(("julia-arrayinterface" ,julia-arrayinterface)
3188 ("julia-chainrulescore" ,julia-chainrulescore)
3189 ("julia-docstringextensions" ,julia-docstringextensions)
3190 ("julia-recipesbase" ,julia-recipesbase)
3191 ("julia-requires" ,julia-requires)
3192 ("julia-staticarrays" ,julia-staticarrays)
3193 ("julia-zygoterules" ,julia-zygoterules)))
3195 ; `(("julia-forwarddiff" ,julia-forwarddiff)
3196 ; ("julia-nlsolve" ,julia-nlsolve)
3197 ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq)
3198 ; ("julia-structarrays" ,julia-structarrays)
3199 ; ("julia-zygote" ,julia-zygote)))
3200 (home-page "https://github.com/SciML/RecursiveArrayTools.jl")
3201 (synopsis "Tools for handling objects like arrays of arrays and deeper nestings")
3202 (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with
3203 recursive arrays like arrays of arrays.")
3204 (license license:expat)))
3206 (define-public julia-reexport
3208 (name "julia-reexport")
3214 (url "https://github.com/simonster/Reexport.jl")
3215 (commit (string-append "v" version))))
3216 (file-name (git-file-name name version))
3218 (base32 "1wj4vnxxmnblm6ajkkdvwb7v4835qrrc406q5is74qv1n68xql7l"))))
3219 (build-system julia-build-system)
3220 (home-page "https://github.com/simonster/Reexport.jl")
3221 (synopsis "Re-export modules and symbols")
3222 (description "This package provides tools to re-export modules and symbols.")
3223 (license license:expat)))
3225 (define-public julia-referencetests
3227 (name "julia-referencetests")
3233 (url "https://github.com/JuliaTesting/ReferenceTests.jl")
3234 (commit (string-append "v" version))))
3235 (file-name (git-file-name name version))
3237 (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
3238 (build-system julia-build-system)
3240 `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
3242 `(("julia-deepdiffs" ,julia-deepdiffs)
3243 ("julia-distances" ,julia-distances)
3244 ("julia-fileio" ,julia-fileio)
3245 ("julia-imagecore" ,julia-imagecore)
3246 ("julia-imageinterminal" ,julia-imageinterminal)))
3248 ; `(("julia-csvfiles" ,julia-csvfiles)
3249 ; ("julia-dataframes" ,julia-dataframes)
3250 ; ("julia-gr" ,julia-gr)
3251 ; ("julia-imagemagick" ,julia-imagemagick)
3252 ; ("julia-imagetransformations" ,julia-imagetransformations)
3253 ; ("julia-plots" ,julia-plots)
3254 ; ("julia-testimages" ,julia-testimages)))
3255 (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/")
3256 (synopsis "Utility package for comparing data against reference files")
3257 (description "@code{ReferenceTests.jl} is a Julia package that adds a couple
3258 of additional macros to your testing toolbox. In particular, it focuses on
3259 functionality for testing values against reference files, which in turn the
3260 package can help create and update if need be.")
3261 (license license:expat)))
3263 (define-public julia-requires
3265 (name "julia-requires")
3271 (url "https://github.com/JuliaPackaging/Requires.jl/")
3272 (commit (string-append "v" version))))
3273 (file-name (git-file-name name version))
3275 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
3276 (build-system julia-build-system)
3277 (inputs ;required for test
3278 `(("julia-example" ,julia-example)))
3280 `(("julia-colors" ,julia-colors)))
3281 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
3282 (synopsis "Faster package loader")
3283 (description "This package make loading packages faster, maybe. It
3284 supports specifying glue code in packages which will load automatically when
3285 another package is loaded, so that explicit dependencies (and long load times)
3287 (license license:expat)))
3289 (define-public julia-reversediff
3291 (name "julia-reversediff")
3297 (url "https://github.com/JuliaDiff/ReverseDiff.jl")
3298 (commit (string-append "v" version))))
3299 (file-name (git-file-name name version))
3301 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl"))))
3302 (build-system julia-build-system)
3304 `(("julia-diffresults" ,julia-diffresults)
3305 ("julia-diffrules" ,julia-diffrules)
3306 ("julia-forwarddiff" ,julia-forwarddiff)
3307 ("julia-functionwrappers" ,julia-functionwrappers)
3308 ("julia-macrotools" ,julia-macrotools)
3309 ("julia-nanmath" ,julia-nanmath)
3310 ("julia-specialfunctions" ,julia-specialfunctions)
3311 ("julia-staticarrays" ,julia-staticarrays)))
3313 `(("julia-difftests" ,julia-difftests)
3314 ("julia-fillarrays" ,julia-fillarrays)))
3315 (home-page "https://github.com/JuliaDiff/ReverseDiff.jl")
3316 (synopsis "Reverse Mode Automatic Differentiation for Julia")
3317 (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based
3318 reverse mode @acronym{AD, automatic differentiation}, that implements methods to
3319 take gradients, Jacobians, Hessians, and higher-order derivatives of native
3320 Julia functions (or any callable object, really).")
3321 (license license:expat)))
3323 (define-public julia-richardson
3325 (name "julia-richardson")
3331 (url "https://github.com/JuliaMath/Richardson.jl")
3332 (commit (string-append "v" version))))
3333 (file-name (git-file-name name version))
3335 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
3336 (build-system julia-build-system)
3337 (home-page "https://juliapackages.com/p/richardson")
3338 (synopsis "Extrapolate function using Richardson method")
3339 (description "This package provides a function extrapolate that
3340 extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
3341 only at a geometric sequence of points @code{> x0} (or optionally @code{<
3342 x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
3343 tableau, which adaptively increases the degree of an extrapolation polynomial
3344 until convergence is achieved to a desired tolerance (or convergence stalls
3345 due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
3346 high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
3347 other power series in @code{h}.")
3348 (license license:expat)))
3350 (define-public julia-rotations
3351 ;; This is the first commit with support for julia-1.6.
3352 (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788")
3355 (name "julia-rotations")
3356 (version (git-version "1.0.2" revision commit))
3361 (url "https://github.com/JuliaGeometry/Rotations.jl")
3363 (file-name (git-file-name name version))
3365 (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19"))))
3366 (build-system julia-build-system)
3368 `(("julia-staticarrays" ,julia-staticarrays)))
3370 `(("julia-benchmarktools" ,julia-benchmarktools)
3371 ("julia-forwarddiff" ,julia-forwarddiff)
3372 ("julia-unitful" ,julia-unitful)))
3373 (home-page "https://github.com/JuliaGeometry/Rotations.jl")
3374 (synopsis "Julia implementations for different rotation parameterisations")
3375 (description "This package implements various 3D rotation parameterizations
3376 and defines conversions between them. At their heart, each rotation
3377 parameterization is a 3×3 unitary (orthogonal) matrix (based on the
3378 @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin
3379 through matrix-vector multiplication.")
3380 (license license:expat))))
3382 (define-public julia-safetestsets
3383 ;; The only release tag is the first commit in the repository.
3384 (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
3387 (name "julia-safetestsets")
3388 (version (git-version "0.0.1" revision commit))
3393 (url "https://github.com/YingboMa/SafeTestsets.jl")
3395 (file-name (git-file-name name version))
3397 (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
3398 (build-system julia-build-system)
3400 `(#:julia-package-name "SafeTestsets"))
3402 `(("julia-staticarrays" ,julia-staticarrays)))
3403 (home-page "https://github.com/YingboMa/SafeTestsets.jl")
3404 (synopsis "Julia's testset in a module")
3405 (description "This package contains the testset from Julia, packaged into
3406 a loadable module.")
3407 (license license:expat))))
3409 (define-public julia-scratch
3411 (name "julia-scratch")
3417 (url "https://github.com/JuliaPackaging/Scratch.jl")
3418 (commit (string-append "v" version))))
3419 (file-name (git-file-name name version))
3422 "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
3423 (build-system julia-build-system)
3425 `(#:tests? #f)) ; Test suite tries to access the Julia package registry.
3426 (home-page "https://github.com/JuliaPackaging/Scratch.jl")
3427 (synopsis "Scratch spaces for all your persistent mutable data needs")
3428 (description "This repository implements the scratch spaces API for
3429 package-specific mutable containers of data. These spaces can contain datasets,
3430 text, binaries, or any other kind of data that would be convenient to store in
3431 a location specific to your package. As compared to Artifacts, these containers
3432 of data are mutable. Because the scratch space location on disk is not very
3433 user-friendly, scratch spaces should, in general, not be used for a storing
3434 files that the user must interact with through a file browser.")
3435 (license license:expat)))
3437 (define-public julia-showoff
3439 (name "julia-showoff")
3445 (url "https://github.com/JuliaGraphics/Showoff.jl")
3446 (commit (string-append "v" version))))
3447 (file-name (git-file-name name version))
3449 (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53"))))
3450 (build-system julia-build-system)
3451 (home-page "https://github.com/JuliaGraphics/Showoff.jl")
3452 (synopsis "Nicely format an array of n things for tables and plots")
3453 (description "@code{Showoff} provides an interface for consistently
3454 formatting an array of n things, e.g. numbers, dates, unitful values. It's used
3455 in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.")
3456 (license license:expat)))
3458 (define-public julia-simpletraits
3460 (name "julia-simpletraits")
3466 (url "https://github.com/mauro3/SimpleTraits.jl")
3467 (commit (string-append "v" version))))
3468 (file-name (git-file-name name version))
3470 (base32 "1aaq91klwxb0r3ckwihf7rd7jvg70757nkhp5ip4cc3lspnnip23"))))
3471 (build-system julia-build-system)
3473 `(("julia-macrotools" ,julia-macrotools)))
3474 (home-page "https://github.com/mauro3/SimpleTraits.jl")
3475 (synopsis "Simple Traits for Julia")
3476 (description "This package provides a macro-based implementation of traits.
3477 The main idea behind traits is to group types outside the type-hierarchy and to
3478 make dispatch work with that grouping. The difference to Union-types is that
3479 types can be added to a trait after the creation of the trait, whereas Union
3480 types are fixed after creation.")
3481 (license license:expat)))
3483 (define-public julia-sortingalgorithms
3485 (name "julia-sortingalgorithms")
3491 (url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3492 ;; Tagging releases is hard:
3493 ;; https://github.com/JuliaCollections/SortingAlgorithms.jl/issues/41#issuecomment-840587380
3494 (commit "aa2b98d384ddd132aae0219e68fb63b92513cb35")))
3495 (file-name (git-file-name name version))
3497 (base32 "13zbx18psxrg4fvkqgp0m7g484vrama2xm6902bbls30801hgljg"))))
3498 (build-system julia-build-system)
3500 `(#:tests? #f)) ; cycle with StatsBase.jl
3502 `(("julia-datastructures" ,julia-datastructures)))
3504 ; `(("julia-statsbase" ,julia-statsbase)))
3505 (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3506 (synopsis "Extra sorting algorithms extending Julia's sorting API")
3507 (description "The SortingAlgorithms package provides three sorting
3508 algorithms that can be used with Julia's standard sorting API: heapsort,
3509 timsort and radixsort.")
3510 (license license:expat)))
3512 (define-public julia-specialfunctions
3514 (name "julia-specialfunctions")
3520 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
3521 (commit (string-append "v" version))))
3522 (file-name (git-file-name name version))
3524 (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0"))))
3525 (build-system julia-build-system)
3527 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
3529 `(("julia-chainrulescore" ,julia-chainrulescore)
3530 ("julia-logexpfunctions" ,julia-logexpfunctions)
3531 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
3532 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
3533 (synopsis "Special mathematical functions")
3534 (description "This package provides special mathematical functions,
3535 including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
3536 cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
3537 polygamma functions.")
3538 (license license:expat)))
3540 (define-public julia-splitapplycombine
3542 (name "julia-splitapplycombine")
3548 (url "https://github.com/JuliaData/SplitApplyCombine.jl")
3549 (commit (string-append "v" version))))
3550 (file-name (git-file-name name version))
3552 (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x"))))
3553 (build-system julia-build-system)
3555 `(("julia-dictionaries" ,julia-dictionaries)
3556 ("julia-indexing" ,julia-indexing)))
3557 (home-page "https://github.com/JuliaData/SplitApplyCombine.jl")
3558 (synopsis "Split-apply-combine strategies for Julia")
3559 (description "@code{SplitApplyCombine.jl} provides high-level, generic tools
3560 for manipulating data - particularly focussing on data in nested containers. An
3561 emphasis is placed on ensuring split-apply-combine strategies are easy to apply,
3562 and work reliably for arbitrary iterables and in an optimized way with the data
3563 structures included in Julia's standard library.")
3564 (license license:expat)))
3566 (define-public julia-stablerngs
3568 (name "julia-stablerngs")
3574 (url "https://github.com/JuliaRandom/StableRNGs.jl")
3575 (commit (string-append "v" version))))
3576 (file-name (git-file-name name version))
3578 (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
3579 (build-system julia-build-system)
3580 (home-page "https://github.com/JuliaRandom/StableRNGs.jl")
3581 (synopsis "Julia RNG with stable streams")
3582 (description "This package intends to provide a simple RNG with stable
3583 streams, suitable for tests in packages which need reproducible streams of
3584 random numbers across Julia versions. Indeed, the Julia RNGs provided by
3585 default are documented to have non-stable streams (which for example enables
3586 some performance improvements).")
3587 (license license:expat)))
3589 (define-public julia-stackviews
3591 (name "julia-stackviews")
3597 (url "https://github.com/JuliaArrays/StackViews.jl")
3598 (commit (string-append "v" version))))
3599 (file-name (git-file-name name version))
3601 (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
3602 (build-system julia-build-system)
3604 `(#:tests? #f ; Documenter.jl not packaged yet
3606 (modify-phases %standard-phases
3607 (add-after 'unpack 'skip-doctest
3609 (substitute* "test/runtests.jl"
3610 ((".*doctest.*") ""))
3613 `(("julia-offsetarrays" ,julia-offsetarrays)))
3615 ; `(("julia-aqua" ,julia-aqua)
3616 ; ("julia-documenter" ,julia-documenter)))
3617 (home-page "https://github.com/JuliaArrays/StackViews.jl")
3618 (synopsis "No more catcat")
3619 (description "StackViews provides only one array type: @code{StackView}.
3620 There are multiple ways to understand @code{StackView}:
3622 @item inverse of @code{eachslice}
3623 @item @code{cat} variant
3625 @item lazy version of @code{repeat} special case
3627 (license license:expat)))
3629 (define-public julia-static
3631 (name "julia-static")
3637 (url "https://github.com/SciML/Static.jl")
3638 (commit (string-append "v" version))))
3639 (file-name (git-file-name name version))
3641 (base32 "1sxfp169c7caaklpp7mz8770ayk9w8xw133m95kf7v11sya1lb7v"))))
3642 (build-system julia-build-system)
3644 `(("julia-ifelse" ,julia-ifelse)))
3646 `(("julia-aqua" ,julia-aqua)))
3647 (home-page "https://github.com/SciML/Static.jl")
3648 (synopsis "Static types useful for dispatch and generated functions")
3649 (description "Static.jl defines a limited set of statically parameterized
3650 types and a common interface that is shared between them.")
3651 (license license:expat)))
3653 (define-public julia-staticarrays
3655 (name "julia-staticarrays")
3661 (url "https://github.com/JuliaArrays/StaticArrays.jl")
3662 (commit (string-append "v" version))))
3663 (file-name (git-file-name name version))
3665 (base32 "1932m3wddll63vqpgjfnkirp9y5agvic7vz5rv2lbjx8gjbamqs4"))))
3666 (build-system julia-build-system)
3668 `(("julia-benchmarktools" ,julia-benchmarktools)))
3669 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
3670 (synopsis "Statically sized arrays")
3671 (description "This package provides a framework for implementing
3672 statically sized arrays in Julia, using the abstract type
3673 @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
3674 @code{StaticArray} will provide fast implementations of common array and
3675 linear algebra operations.")
3676 (license license:expat)))
3678 (define-public julia-statsapi
3680 (name "julia-statsapi")
3686 (url "https://github.com/JuliaStats/StatsAPI.jl")
3687 (commit (string-append "v" version))))
3688 (file-name (git-file-name name version))
3690 (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv"))))
3691 (build-system julia-build-system)
3692 (home-page "https://juliastats.org/")
3693 (synopsis "Statistics-focused namespace for packages to share functions")
3694 (description "This package provides a namespace for data-related generic
3695 function definitions to solve the optional dependency problem; packages wishing
3696 to share and/or extend functions can avoid depending directly on each other by
3697 moving the function definition to @code{StatsAPI.jl} and each package taking a
3699 (license license:expat)))
3701 (define-public julia-statsbase
3703 (name "julia-statsbase")
3709 (url "https://github.com/JuliaStats/StatsBase.jl")
3710 (commit (string-append "v" version))))
3711 (file-name (git-file-name name version))
3713 (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi"))))
3714 (build-system julia-build-system)
3716 `(("julia-dataapi" ,julia-dataapi)
3717 ("julia-datastructures" ,julia-datastructures)
3718 ("julia-missings" ,julia-missings)
3719 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
3720 ("julia-statsapi" ,julia-statsapi)))
3722 `(("julia-stablerngs" ,julia-stablerngs)))
3723 (home-page "https://github.com/JuliaStats/StatsBase.jl")
3724 (synopsis "Basic statistics for Julia")
3725 (description "StatsBase.jl is a Julia package that provides basic support
3726 for statistics. Particularly, it implements a variety of statistics-related
3727 functions, such as scalar statistics, high-order moment computation, counting,
3728 ranking, covariances, sampling, and empirical density estimation.")
3729 (license license:expat)))
3731 (define-public julia-stringdistances
3733 (name "julia-stringdistances")
3739 (url "https://github.com/matthieugomez/StringDistances.jl")
3740 (commit (string-append "v" version))))
3741 (file-name (git-file-name name version))
3743 (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7"))))
3744 (build-system julia-build-system)
3746 `(("julia-distances" ,julia-distances)))
3747 (home-page "https://github.com/matthieugomez/StringDistances.jl")
3748 (synopsis "String Distances in Julia")
3749 (description "This package provides string distances in Julia. Distances
3750 are defined for @code{AbstractStrings}, and any iterator that define
3751 @code{length()}. The package also defines Distance \"modifiers\" that can be
3752 applied to any distance.")
3753 (license license:expat)))
3755 (define-public julia-structtypes
3757 (name "julia-structtypes")
3763 (url "https://github.com/JuliaData/StructTypes.jl")
3764 (commit (string-append "v" version))))
3765 (file-name (git-file-name name version))
3767 (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
3768 (build-system julia-build-system)
3769 (home-page "https://juliadata.github.io/StructTypes.jl/stable/")
3770 (synopsis "Abstract definitions and convenience methods for Julia objects")
3771 (description "This package provides the @code{StructTypes.StructType} trait
3772 for Julia types to declare the kind of \"struct\" they are, providing
3773 serialization/deserialization packages patterns and strategies to automatically
3774 construct objects.")
3775 (license license:expat)))
3777 (define-public julia-suppressor
3779 (name "julia-suppressor")
3785 (url "https://github.com/JuliaIO/Suppressor.jl")
3786 (commit (string-append "v" version))))
3787 (file-name (git-file-name name version))
3789 (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
3790 (build-system julia-build-system)
3791 (home-page "https://github.com/JuliaIO/Suppressor.jl")
3792 (synopsis "Capture stdout and sterr")
3793 (description "Julia macros for suppressing and/or capturing output (stdout),
3794 warnings (stderr) or both streams at the same time.")
3795 (license license:expat)))
3797 (define-public julia-tableiointerface
3799 (name "julia-tableiointerface")
3805 (url "https://github.com/lungben/TableIOInterface.jl")
3806 (commit (string-append "v" version))))
3807 (file-name (git-file-name name version))
3809 (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"))))
3810 (build-system julia-build-system)
3811 (home-page "https://github.com/lungben/TableIOInterface.jl")
3812 (synopsis "File formats based on file extensions")
3813 (description "This package determines tabular file formats based on file
3814 extensions. It is intended to be the base both for @code{TableIO.jl} and for
3815 the @code{Pluto.jl} tabular data import functionality.")
3816 (license license:expat)))
3818 (define-public julia-tables
3820 (name "julia-tables")
3826 (url "https://github.com/JuliaData/Tables.jl")
3827 (commit (string-append "v" version))))
3828 (file-name (git-file-name name version))
3830 (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb"))))
3831 (build-system julia-build-system)
3833 `(("julia-dataapi" ,julia-dataapi)
3834 ("julia-datavalueinterfaces" ,julia-datavalueinterfaces)
3835 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3836 ("julia-tabletraits" ,julia-tabletraits)))
3838 `(("julia-datavalues" ,julia-datavalues)
3839 ("julia-queryoperators" ,julia-queryoperators)))
3840 (home-page "https://github.com/JuliaData/Tables.jl")
3841 (synopsis "Interface for tables in Julia")
3842 (description "The @code{Tables.jl} package provides simple, yet powerful
3843 interface functions for working with all kinds tabular data.")
3844 (license license:expat)))
3846 (define-public julia-tableshowutils
3847 ;; The 0.2.5 release is not fully compatable with newer versions of Julia.
3848 (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460")
3851 (name "julia-tableshowutils")
3857 (url "https://github.com/queryverse/TableShowUtils.jl")
3859 (file-name (git-file-name name version))
3861 (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5"))))
3862 (build-system julia-build-system)
3864 `(("julia-datavalues" ,julia-datavalues)
3865 ("julia-json" ,julia-json)))
3866 (home-page "https://github.com/queryverse/TableShowUtils.jl")
3867 (synopsis "Implement show for TableTraits.jl types")
3868 (description "This package provides some common helper functions that make
3869 it easier to implement various @code{Base.show} functions for types that
3870 participate in the @code{TableTraits.jl} ecosystem.")
3871 (license license:expat))))
3873 (define-public julia-tabletraits
3875 (name "julia-tabletraits")
3881 (url "https://github.com/queryverse/TableTraits.jl")
3882 (commit (string-append "v" version))))
3883 (file-name (git-file-name name version))
3885 (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"))))
3886 (build-system julia-build-system)
3888 `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)))
3889 (home-page "https://github.com/queryverse/TableTraits.jl")
3890 (synopsis "Traits for Julia tables")
3891 (description "TableTraits defines a generic interface for tabular data.")
3892 (license license:expat)))
3894 (define-public julia-tensorcore
3896 (name "julia-tensorcore")
3902 (url "https://github.com/JuliaMath/TensorCore.jl")
3903 (commit (string-append "v" version))))
3904 (file-name (git-file-name name version))
3906 (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy"))))
3907 (build-system julia-build-system)
3908 (home-page "https://github.com/JuliaMath/TensorCore.jl")
3909 (synopsis "Tensor-algebra definitions")
3910 (description "This package is intended as a lightweight foundation for
3911 tensor operations across the Julia ecosystem. Currently it exports three
3912 operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor,
3913 product preserves all dimensions}, and @acronym{boxdot, contracts neighboring
3915 (license license:expat)))
3917 (define-public julia-testimages
3919 (name "julia-testimages")
3925 (url "https://github.com/JuliaImages/TestImages.jl")
3926 (commit (string-append "v" version))))
3927 (file-name (git-file-name name version))
3929 (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
3930 (build-system julia-build-system)
3932 `(#:tests? #f)) ; cycle with ImageMagick.jl
3934 `(("julia-axisarrays" ,julia-axisarrays)
3935 ("julia-colortypes" ,julia-colortypes)
3936 ("julia-fileio" ,julia-fileio)
3937 ("julia-offsetarrays" ,julia-offsetarrays)
3938 ("julia-stringdistances" ,julia-stringdistances)))
3940 ; `(("julia-colors" ,julia-colors)
3941 ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
3942 ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment)
3943 ; ("julia-imagemagick" ,julia-imagemagick)
3944 ; ("julia-ometiff" ,julia-ometiff)
3945 ; ("julia-referencetests" ,julia-referencetests)))
3946 (home-page "https://testimages.juliaimages.org/")
3947 (synopsis "Standard test images for Julia")
3948 (description "This package provides a convenient Julia interface for loading
3949 standard named test images and example images for the internal usage in
3950 @code{JuliaImages}. This can be used in conjunction with the @code{Images}
3952 (license license:expat)))
3954 (define-public julia-tracker
3956 (name "julia-tracker")
3962 (url "https://github.com/FluxML/Tracker.jl")
3963 (commit (string-append "v" version))))
3964 (file-name (git-file-name name version))
3966 (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j"))
3967 (patches (search-patches "julia-tracker-16-compat.patch"))))
3968 (build-system julia-build-system)
3970 `(("julia-adapt" ,julia-adapt)
3971 ("julia-diffrules" ,julia-diffrules)
3972 ("julia-forwarddiff" ,julia-forwarddiff)
3973 ("julia-macrotools" ,julia-macrotools)
3974 ("julia-nanmath" ,julia-nanmath)
3975 ("julia-nnlib" ,julia-nnlib)
3976 ("julia-requires" ,julia-requires)
3977 ("julia-specialfunctions" ,julia-specialfunctions)))
3979 `(("julia-pdmats" ,julia-pdmats)))
3980 (home-page "https://github.com/FluxML/Tracker.jl")
3981 (synopsis "Operator overloading reverse-mode automatic differentiator")
3982 (description "@code{Tracker.jl} previously provided @code{Flux.jl} with
3983 automatic differentiation for its machine learning platform.")
3984 (license license:expat)))
3986 (define-public julia-typedtables
3988 (name "julia-typedtables")
3994 (url "https://github.com/JuliaData/TypedTables.jl")
3995 (commit (string-append "v" version))))
3996 (file-name (git-file-name name version))
3998 (base32 "06k5h7ybsh29b6kiy0p62rp9b2q3xi9jk8p9wf0kq907p5kvfnfy"))))
3999 (build-system julia-build-system)
4001 `(("julia-adapt" ,julia-adapt)
4002 ("julia-splitapplycombine" ,julia-splitapplycombine)
4003 ("julia-tables" ,julia-tables)))
4004 (home-page "https://github.com/JuliaData/TypedTables.jl")
4005 (synopsis "Column-based storage for data analysis in Julia")
4006 (description "@code{TypedTables.jl} provides two column-based storage
4007 containers: @code{Table} and @code{FlexTable}, both of which represent an array
4008 of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use
4009 and fast, and presents a very minimal new interface to learn.")
4010 (license license:expat)))
4012 (define-public julia-unpack
4014 (name "julia-unpack")
4020 (url "https://github.com/mauro3/UnPack.jl")
4021 (commit (string-append "v" version))))
4022 (file-name (git-file-name name version))
4024 (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
4025 (build-system julia-build-system)
4026 (home-page "https://github.com/mauro3/UnPack.jl")
4027 (synopsis "Pack and Unpack macros for Julia")
4028 (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
4029 types, modules, and dictionaries.")
4030 (license license:expat)))
4032 (define-public julia-uris
4040 (url "https://github.com/JuliaWeb/URIs.jl")
4041 (commit (string-append "v" version))))
4042 (file-name (git-file-name name version))
4044 (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
4045 (build-system julia-build-system)
4047 '(#:julia-package-name "URIs" ;required to run tests
4049 (modify-phases %standard-phases
4050 (add-before 'check 'change-dir
4051 ;; Tests must be run from the testdir
4052 (lambda* (#:key source outputs #:allow-other-keys)
4053 (let ((out (assoc-ref outputs "out")))
4055 (string-append out "/share/julia/packages/URIs/test")))
4057 ;; required for tests
4058 (inputs `(("julia-json" ,julia-json)))
4059 (home-page "https://github.com/JuliaWeb/URIs.jl")
4060 (synopsis "URI parsing in Julia")
4061 (description "@code{URIs.jl} is a Julia package that allows parsing and
4062 working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
4064 (license license:expat)))
4066 (define-public julia-unitful
4068 (name "julia-unitful")
4074 (url "https://github.com/PainterQubits/Unitful.jl")
4075 (commit (string-append "v" version))))
4076 (file-name (git-file-name name version))
4078 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
4079 (build-system julia-build-system)
4081 `(("julia-constructionbase" ,julia-constructionbase)))
4082 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
4083 (synopsis "Physical units in Julia")
4084 (description "This package supports SI units and also many other unit
4086 (license license:expat)))
4088 (define-public julia-versionparsing
4090 (name "julia-versionparsing")
4096 (url "https://github.com/JuliaInterop/VersionParsing.jl")
4097 (commit (string-append "v" version))))
4098 (file-name (git-file-name name version))
4100 (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva"))))
4101 (build-system julia-build-system)
4102 (home-page "https://github.com/JuliaInterop/VersionParsing.jl")
4103 (synopsis "Flexible VersionNumber parsing in Julia")
4104 (description "The @code{VersionParsing} package implements flexible parsing
4105 of version-number strings into Julia's built-in @code{VersionNumber} type, via
4106 the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)}
4107 constructor, @code{vparse(string)} can handle version-number strings in a much
4108 wider range of formats than are encompassed by the semver standard. This is
4109 useful in order to support @code{VersionNumber} comparisons applied to
4110 \"foreign\" version numbers from external packages.")
4111 (license license:expat)))
4113 (define-public julia-weakrefstrings
4115 (name "julia-weakrefstrings")
4121 (url "https://github.com/JuliaData/WeakRefStrings.jl")
4122 (commit (string-append "v" version))))
4123 (file-name (git-file-name name version))
4125 (base32 "1p8q62zsmi02vyckgy25ddmxns223xrhx575x9lfgvr7jrw1kl2p"))))
4126 (build-system julia-build-system)
4128 `(("julia-dataapi" ,julia-dataapi)
4129 ("julia-parsers" ,julia-parsers)))
4130 (home-page "https://github.com/JuliaData/WeakRefStrings.jl")
4131 (synopsis "Efficient string representation and transfer in Julia")
4132 (description "This package provides a minimal String type for Julia that
4133 allows for efficient string representation and transfer")
4134 (license license:expat)))
4136 (define-public julia-woodburymatrices
4138 (name "julia-woodburymatrices")
4144 (url "https://github.com/timholy/WoodburyMatrices.jl")
4145 (commit (string-append "v" version))))
4146 (file-name (git-file-name name version))
4148 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
4149 (build-system julia-build-system)
4150 (home-page "https://github.com/timholy/WoodburyMatrices.jl")
4151 (synopsis "Support for the Woodbury matrix identity for Julia")
4152 (description "This package provides support for the Woodbury matrix identity
4153 for the Julia programming language. This is a generalization of the
4154 Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious
4155 for floating-point roundoff errors, so be prepared for a certain amount of
4156 inaccuracy in the result.")
4157 (license license:expat)))
4159 (define-public julia-zipfile
4161 (name "julia-zipfile")
4167 (url "https://github.com/fhs/ZipFile.jl")
4168 (commit (string-append "v" version))))
4169 (file-name (git-file-name name version))
4172 "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
4173 (build-system julia-build-system)
4175 `(("julia-zlib-jll" ,julia-zlib-jll)))
4176 (home-page "https://github.com/fhs/ZipFile.jl")
4177 (synopsis "Read/Write ZIP archives in Julia")
4178 (description "This module provides support for reading and writing ZIP
4179 archives in Julia.")
4180 (license license:expat)))
4182 (define-public julia-zygoterules
4184 (name "julia-zygoterules")
4190 (url "https://github.com/FluxML/ZygoteRules.jl")
4191 (commit (string-append "v" version))))
4192 (file-name (git-file-name name version))
4194 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
4195 (build-system julia-build-system)
4197 `(("julia-macrotools" ,julia-macrotools)))
4198 (home-page "https://github.com/FluxML/ZygoteRules.jl")
4199 (synopsis "Add minimal custom gradients to Zygote")
4200 (description "Minimal package which enables to add custom gradients to
4201 Zygote, without depending on Zygote itself.")
4202 (license license:expat)))
4204 (define-public julia-zygote
4206 (name "julia-zygote")
4212 (url "https://github.com/FluxML/Zygote.jl")
4213 (commit (string-append "v" version))))
4214 (file-name (git-file-name name version))
4216 (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
4217 (build-system julia-build-system)
4219 `(#:tests? #f)) ;require CUDA, not packaged yet
4221 `(("julia-abstractffs" ,julia-abstractffts)
4222 ("julia-chainrules" ,julia-chainrules)
4223 ("julia-diffrules" ,julia-diffrules)
4224 ("julia-fillarrays" ,julia-fillarrays)
4225 ("julia-forwarddiff" ,julia-forwarddiff)
4226 ("julia-irtools" ,julia-irtools)
4227 ("julia-macrotools" ,julia-macrotools)
4228 ("julia-nanmath" ,julia-nanmath)
4229 ("julia-requires" ,julia-requires)
4230 ("julia-specialfunctions" ,julia-specialfunctions)
4231 ("julia-zygote-rules" ,julia-zygoterules)))
4232 (home-page "https://fluxml.ai/Zygote.jl")
4233 (synopsis "Automatic differentiation in Julia")
4234 (description "Zygote provides source-to-source automatic
4235 differentiation (AD) in Julia, and is the next-generation AD system for the
4236 Flux differentiable programming framework.")
4237 (license license:expat)))