gnu/packages/orange.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
   3 ;;;
   4 ;;; This file is part of GNU Guix.
   5 ;;;
   6 ;;; GNU Guix is free software; you can redistribute it and/or modify it
   7 ;;; under the terms of the GNU General Public License as published by
   8 ;;; the Free Software Foundation; either version 3 of the License, or (at
   9 ;;; your option) any later version.
  10 ;;;
  11 ;;; GNU Guix is distributed in the hope that it will be useful, but
  12 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  13 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  14 ;;; GNU General Public License for more details.
  15 ;;;
  16 ;;; You should have received a copy of the GNU General Public License
  17 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  18
  19 (define-module (gnu packages orange)
  20   #:use-module ((guix licenses) #:prefix license:)
  21   #:use-module (guix packages)
  22   #:use-module (guix download)
  23   #:use-module (guix build-system python)
  24   #:use-module (gnu packages)
  25   #:use-module (gnu packages freedesktop)
  26   #:use-module (gnu packages graph)
  27   #:use-module (gnu packages machine-learning)
  28   #:use-module (gnu packages python-crypto)
  29   #:use-module (gnu packages python-science)
  30   #:use-module (gnu packages python-web)
  31   #:use-module (gnu packages python-xyz)
  32   #:use-module (gnu packages qt))
  33
  34 (define-public python-orange-canvas-core
  35   (package
  36     (name "python-orange-canvas-core")
  37     (version "0.1.19")
  38     (source
  39      (origin
  40        (method url-fetch)
  41        (uri (pypi-uri "orange-canvas-core" version))
  42        (sha256
  43         (base32 "03wav2msfm32y8zwq69v1v6qyh1ld76xla2z60avf49yhbwjgwal"))))
  44     (build-system python-build-system)
  45     (arguments
  46      `(#:phases
  47        (modify-phases %standard-phases
  48          (add-before 'check 'check-setup
  49            (lambda _
  50              ;; This test fails with: RuntimeError: Event loop is closed.
  51              (substitute* "orangecanvas/application/tests/test_mainwindow.py"
  52                (("test_help_requests") "_test_help_requests"))
  53              (setenv "HOME" "/tmp")
  54              (setenv "QT_QPA_PLATFORM" "offscreen")
  55              #t)))))
  56     (propagated-inputs
  57      `(("python-anyqt" ,python-anyqt)
  58        ("python-cachecontrol" ,python-cachecontrol)
  59        ("python-commonmark" ,python-commonmark)
  60        ("python-dictdiffer" ,python-dictdiffer)
  61        ("python-docutils" ,python-docutils)
  62        ("python-pyqt" ,python-pyqt)
  63        ("python-qasync" ,python-qasync)
  64        ("python-requests" ,python-requests)))
  65     (home-page "https://github.com/biolab/orange-canvas-core")
  66     (synopsis "Core component of Orange Canvas")
  67     (description
  68      "Orange Canvas Core is a framework for building graphical user interfaces
  69 for editing workflows.  It is a component used to build the Orange Canvas
  70 data-mining application.")
  71     (license license:gpl3)))
  72
  73 (define-public python-orange-widget-base
  74   (package
  75     (name "python-orange-widget-base")
  76     (version "4.12.0")
  77     (source
  78      (origin
  79        (method url-fetch)
  80        (uri (pypi-uri "orange-widget-base" version))
  81        (sha256
  82         (base32 "13sy3s8rdqs3i3ghixljpqvnfz81qmbb0kqlasw39zvf39qc22kz"))))
  83     (build-system python-build-system)
  84     (arguments
  85      `(;; unittest fails to load one test, all other tests are passing:
  86        ;; AttributeError: module 'orangewidget' has no attribute 'version'.
  87        #:tests? #f
  88        #:phases
  89        (modify-phases %standard-phases
  90          (add-before 'check 'check-setup
  91            (lambda _
  92              (setenv "HOME" "/tmp")
  93              (setenv "QT_QPA_PLATFORM" "offscreen")
  94              #t)))))
  95     (propagated-inputs
  96      `(("python-anyqt" ,python-anyqt)
  97        ("python-matplotlib" ,python-matplotlib)
  98        ("python-orange-canvas-core"
  99         ,python-orange-canvas-core)
 100        ("python-pyqtgraph" ,python-pyqtgraph)))
 101     (home-page "https://github.com/biolab/orange-widget-base")
 102     (synopsis "Base Widget for Orange Canvas")
 103     (description
 104      "Orange Widget Base provides a base widget component for a interactive
 105 GUI based workflow.  It is primarily used in the Orange framework.")
 106     (license license:gpl3+)))
 107
 108 (define-public orange
 109   (package
 110     (name "orange")
 111     (version "3.28.0")
 112     (source
 113      (origin
 114        (method url-fetch)
 115        (uri (pypi-uri "Orange3" version))
 116        (sha256
 117         (base32 "1ac4xjjkx06z10hl7k0zh1z3qhkl5vng15l9jkpkmck9spinbzil"))))
 118     (build-system python-build-system)
 119     (arguments
 120      `(#:phases
 121        (modify-phases %standard-phases
 122          (add-after 'unpack 'preparations
 123            (lambda _
 124              ;; Delete test that opens an outgoing connection.
 125              (delete-file "Orange/tests/test_url_reader.py")
 126              ;; This is a binary data file and it breaks runpath validation.
 127              (delete-file "Orange/tests/datasets/binary-blob.tab")
 128              ;; Skip the test which uses that binary file.
 129              (substitute* "Orange/tests/test_txt_reader.py"
 130                (("test_read_nonutf8_encoding") "_test_read_nonutf8_encoding"))
 131              ;; We use a correct version of PyQtWebEngine, but the build scripts
 132              ;; consider it incorrect anyways. Remove the constraint entirely to
 133              ;; work around this bug.
 134              (substitute* "requirements-gui.txt" (("PyQtWebEngine>=5.12") ""))
 135              #t))
 136          (add-before 'check 'set-HOME
 137            ;; Tests need a writable home.
 138            (lambda _ (setenv "HOME" "/tmp") #t))
 139          (add-after 'install 'wrap-executable
 140            ;; Ensure that icons are found at runtime.
 141            (lambda* (#:key inputs outputs #:allow-other-keys)
 142              (let ((out (assoc-ref outputs "out")))
 143                (wrap-program (string-append out "/bin/orange-canvas")
 144                  `("QT_PLUGIN_PATH" prefix
 145                    ,(list (string-append (assoc-ref inputs "qtsvg")
 146                                          "/lib/qt5/plugins/")))))
 147              #t)))))
 148     (native-inputs
 149      `(("python-cython" ,python-cython)))
 150     (inputs
 151      `(("python-anyqt" ,python-anyqt)
 152        ("python-baycomp" ,python-baycomp)
 153        ("python-bottleneck" ,python-bottleneck)
 154        ("python-chardet" ,python-chardet)
 155        ("python-httpx" ,python-httpx)
 156        ("python-joblib" ,python-joblib)
 157        ("python-keyring" ,python-keyring)
 158        ("python-keyrings.alt" ,python-keyrings.alt)
 159        ("python-louvain" ,python-louvain)
 160        ("python-matplotlib" ,python-matplotlib)
 161        ("python-networkx" ,python-networkx)
 162        ("python-numpy" ,python-numpy)
 163        ("python-openpyxl" ,python-openpyxl)
 164        ("python-opentsne" ,python-opentsne)
 165        ("python-orange-canvas-core"
 166         ,python-orange-canvas-core)
 167        ("python-orange-widget-base"
 168         ,python-orange-widget-base)
 169        ("python-pandas" ,python-pandas)
 170        ("python-pyqt" ,python-pyqt)
 171        ("python-pyqtgraph" ,python-pyqtgraph)
 172        ("python-pyqtwebengine" ,python-pyqtwebengine)
 173        ("python-pyyaml" ,python-pyyaml)
 174        ("python-requests" ,python-requests)
 175        ("python-scikit-learn" ,python-scikit-learn)
 176        ("python-scipy" ,python-scipy)
 177        ("python-serverfiles" ,python-serverfiles)
 178        ("python-xlrd" ,python-xlrd)
 179        ("python-xlsxwriter" ,python-xlsxwriter)
 180        ("qtbase" ,qtbase-5)
 181        ("qtsvg" ,qtsvg)
 182        ("xdg-utils" ,xdg-utils)))
 183     (home-page "https://orangedatamining.com/")
 184     (synopsis "Component-based data mining framework")
 185     (description
 186      "Orange is a component-based, graphical framework for machine learning,
 187 data analysis, data mining and data visualization.")
 188     (license license:gpl3+)))
 189
 190 (define-public python-serverfiles
 191   (package
 192     (name "python-serverfiles")
 193     (version "0.3.1")
 194     (source
 195      (origin
 196        (method url-fetch)
 197        (uri (pypi-uri "serverfiles" version))
 198        (sha256
 199         (base32 "1qgbzgnaxj4wsp2rdas53qxsh0j7xpibq25w6lviwyaqwwrgq42y"))))
 200     (build-system python-build-system)
 201     (propagated-inputs
 202      `(("python-requests" ,python-requests)))
 203     (home-page "https://github.com/biolab/serverfiles")
 204     (synopsis "Utility to access files on a HTTP server and store them locally")
 205     (description
 206      "This package provides an utility that accesses files on a HTTP server
 207 and stores them locally for reuse.  It is primarily used by the Orange
 208 framework.")
 209     (license license:gpl3+)))