gnu: julia-datastructures: Fix tests on i686-linux.
[jackhill/guix/guix.git] / gnu / packages / julia-xyz.scm
1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
3 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
4 ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
5 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
6 ;;;
7 ;;; This file is part of GNU Guix.
8 ;;;
9 ;;; GNU Guix is free software; you can redistribute it and/or modify it
10 ;;; under the terms of the GNU General Public License as published by
11 ;;; the Free Software Foundation; either version 3 of the License, or (at
12 ;;; your option) any later version.
13 ;;;
14 ;;; GNU Guix is distributed in the hope that it will be useful, but
15 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
16 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 ;;; GNU General Public License for more details.
18 ;;;
19 ;;; You should have received a copy of the GNU General Public License
20 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
21
22 (define-module (gnu packages julia-xyz)
23 #:use-module ((guix licenses) #:prefix license:)
24 #:use-module (gnu packages)
25 #:use-module (guix utils)
26 #:use-module (guix packages)
27 #:use-module (guix git-download)
28 #:use-module (guix build-system julia)
29 #:use-module (gnu packages gcc)
30 #:use-module (gnu packages julia-jll)
31 #:use-module (gnu packages python)
32 #:use-module (gnu packages python-xyz)
33 #:use-module (gnu packages version-control))
34
35 (define-public julia-abstractffts
36 (package
37 (name "julia-abstractffts")
38 (version "1.0.1")
39 (source
40 (origin
41 (method git-fetch)
42 (uri (git-reference
43 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
44 (commit (string-append "v" version))))
45 (file-name (git-file-name name version))
46 (sha256
47 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
48 (build-system julia-build-system)
49 (inputs ;required for tests
50 `(("julia-unitful" ,julia-unitful)))
51 (home-page "https://github.com/JuliaGPU/Adapt.jl")
52 (synopsis "General framework for fast Fourier transforms (FFTs)")
53 (description "This package allows multiple FFT packages to co-exist with
54 the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
55 mainly not intended to be used directly. Instead, developers of packages that
56 implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
57 types/functions defined in AbstractFFTs.")
58 (license license:expat)))
59
60 (define-public julia-abstracttrees
61 (package
62 (name "julia-abstracttrees")
63 (version "0.3.4")
64 (source
65 (origin
66 (method git-fetch)
67 (uri (git-reference
68 (url "https://github.com/JuliaCollections/AbstractTrees.jl")
69 (commit (string-append "v" version))))
70 (file-name (git-file-name name version))
71 (sha256
72 (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
73 (build-system julia-build-system)
74 (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
75 (synopsis "Abstract Julia interfaces for working with trees")
76 (description "This Julia package provides several utilities for working
77 with tree-like data structures. Most importantly, it defines the
78 @code{children} method that any package that contains such a data structure
79 may import and extend in order to take advantage of any generic tree algorithm
80 in this package.")
81 (license license:expat)))
82
83 (define-public julia-adapt
84 (package
85 (name "julia-adapt")
86 (version "3.3.1")
87 (source
88 (origin
89 (method git-fetch)
90 (uri (git-reference
91 (url "https://github.com/JuliaGPU/Adapt.jl")
92 (commit (string-append "v" version))))
93 (file-name (git-file-name name version))
94 (sha256
95 (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7"))))
96 (build-system julia-build-system)
97 (home-page "https://github.com/JuliaGPU/Adapt.jl")
98 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
99 (description "This Julia package provides the @code{adapt(T, x)} function
100 acts like @code{convert(T, x)}, but without the restriction of returning a
101 @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
102 be GPU compatible without throwing away the wrapper.")
103 (license license:expat)))
104
105 (define-public julia-ansicoloredprinters
106 (package
107 (name "julia-ansicoloredprinters")
108 (version "0.0.1")
109 (source
110 (origin
111 (method git-fetch)
112 (uri (git-reference
113 (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
114 (commit (string-append "v" version))))
115 (file-name (git-file-name name version))
116 (sha256
117 (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
118 (build-system julia-build-system)
119 (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
120 (synopsis "ANSI escape code translator")
121 (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
122 ANSI escape codes to another format.")
123 (license license:expat)))
124
125 (define-public julia-aqua
126 (package
127 (name "julia-aqua")
128 (version "0.5.1")
129 (source
130 (origin
131 (method git-fetch)
132 (uri (git-reference
133 (url "https://github.com/JuliaTesting/Aqua.jl")
134 (commit (string-append "v" version))))
135 (file-name (git-file-name name version))
136 (sha256
137 (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk"))))
138 (build-system julia-build-system)
139 (arguments
140 `(#:parallel-tests? #f))
141 (home-page "https://github.com/JuliaTesting/Aqua.jl")
142 (synopsis "Automated quality assurance for Julia packages")
143 (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
144 provides functions to run a few automatable checks for Julia packages.")
145 (license license:expat)))
146
147 (define-public julia-arrayinterface
148 (package
149 (name "julia-arrayinterface")
150 (version "3.1.19")
151 (source
152 (origin
153 (method git-fetch)
154 (uri (git-reference
155 (url "https://github.com/JuliaArrays/ArrayInterface.jl")
156 (commit (string-append "v" version))))
157 (file-name (git-file-name name version))
158 (sha256
159 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33"))))
160 (build-system julia-build-system)
161 (propagated-inputs
162 `(("julia-ifelse" ,julia-ifelse)
163 ("julia-requires" ,julia-requires)
164 ("julia-static" ,julia-static)))
165 (native-inputs
166 `(("julia-aqua" ,julia-aqua)
167 ("julia-bandedmatrices" ,julia-bandedmatrices)
168 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
169 ("julia-ifelse" ,julia-ifelse)
170 ("julia-offsetarrays" ,julia-offsetarrays)
171 ("julia-staticarrays" ,julia-staticarrays)))
172 (home-page "https://github.com/JuliaArrays/ArrayInterface.jl")
173 (synopsis "Base array interface primitives")
174 (description "The purpose of this library is to solidify extensions to the
175 current @code{AbstractArray} interface, which are put to use in package
176 ecosystems like @code{DifferentialEquations.jl}. Since these libraries are
177 live, this package will serve as a staging ground for ideas before they are
178 merged into Base Julia. For this reason, no functionality is exported so that
179 if such functions are added and exported in a future Base Julia, there will be
180 no issues with the upgrade.")
181 (license license:expat)))
182
183 (define-public julia-arraylayouts
184 (package
185 (name "julia-arraylayouts")
186 (version "0.7.6")
187 (source
188 (origin
189 (method git-fetch)
190 (uri (git-reference
191 (url "https://github.com/JuliaMatrices/ArrayLayouts.jl")
192 (commit (string-append "v" version))))
193 (file-name (git-file-name name version))
194 (sha256
195 (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg"))))
196 (build-system julia-build-system)
197 (propagated-inputs
198 `(("julia-fillarrays" ,julia-fillarrays)))
199 (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl")
200 (synopsis "Array layouts and general fast linear algebra")
201 (description "This package implements a trait-based framework for describing
202 array layouts such as column major, row major, etc. that can be dispatched to
203 appropriate BLAS or optimised Julia linear algebra routines. This supports a
204 much wider class of matrix types than Julia's in-built @code{StridedArray}.")
205 (license license:expat)))
206
207 (define-public julia-axisalgorithms
208 (package
209 (name "julia-axisalgorithms")
210 (version "1.0.0")
211 (source
212 (origin
213 (method git-fetch)
214 (uri (git-reference
215 (url "https://github.com/timholy/AxisAlgorithms.jl")
216 (commit (string-append "v" version))))
217 (file-name (git-file-name name version))
218 (sha256
219 (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk"))))
220 (build-system julia-build-system)
221 (propagated-inputs
222 `(("julia-woodburymatrices" ,julia-woodburymatrices)))
223 (home-page "https://github.com/timholy/AxisAlgorithms.jl")
224 (synopsis "Filtering and linear algebra routines for multidimensional arrays")
225 (description "@code{AxisAlgorithms} is a collection of filtering and linear
226 algebra algorithms for multidimensional arrays. For algorithms that would
227 typically apply along the columns of a matrix, you can instead pick an arbitrary
228 axis (dimension).")
229 (license license:expat)))
230
231 (define-public julia-axisarrays
232 (package
233 (name "julia-axisarrays")
234 (version "0.4.4")
235 (source
236 (origin
237 (method git-fetch)
238 (uri (git-reference
239 (url "https://github.com/JuliaArrays/AxisArrays.jl")
240 (commit (string-append "v" version))))
241 (file-name (git-file-name name version))
242 (sha256
243 (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk"))))
244 (build-system julia-build-system)
245 (propagated-inputs
246 `(("julia-rangearrays" ,julia-rangearrays)
247 ("julia-intervalsets" ,julia-intervalsets)
248 ("julia-itertools" ,julia-itertools)))
249 (native-inputs
250 `(("julia-offsetarrays" ,julia-offsetarrays)
251 ("julia-unitful" ,julia-unitful)))
252 (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/")
253 (synopsis "Arrays where each dimension can have a named axis with values")
254 (description "This package for the Julia language provides an array type
255 (the AxisArray) that knows about its dimension names and axis values. This
256 allows for indexing by name without incurring any runtime overhead. This
257 permits one to implement algorithms that are oblivious to the storage order of
258 the underlying arrays. AxisArrays can also be indexed by the values along their
259 axes, allowing column names or interval selections.")
260 (license license:expat)))
261
262 (define-public julia-bandedmatrices
263 (package
264 (name "julia-bandedmatrices")
265 (version "0.16.10")
266 (source
267 (origin
268 (method git-fetch)
269 (uri (git-reference
270 (url "https://github.com/JuliaMatrices/BandedMatrices.jl")
271 (commit (string-append "v" version))))
272 (file-name (git-file-name name version))
273 (sha256
274 (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism"))))
275 (build-system julia-build-system)
276 (propagated-inputs
277 `(("julia-arraylayouts" ,julia-arraylayouts)
278 ("julia-fillarrays" ,julia-fillarrays)))
279 (native-inputs
280 `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra)))
281 (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl")
282 (synopsis "Julia package for representing banded matrices")
283 (description "This package supports representing banded matrices by only
284 the entries on the bands.")
285 (license license:expat)))
286
287 (define-public julia-benchmarktools
288 (package
289 (name "julia-benchmarktools")
290 (version "1.1.1")
291 (source
292 (origin
293 (method git-fetch)
294 (uri (git-reference
295 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
296 (commit (string-append "v" version))))
297 (file-name (git-file-name name version))
298 (sha256
299 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
300 (build-system julia-build-system)
301 (propagated-inputs `(("julia-json" ,julia-json)))
302 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
303 (synopsis "Benchmarking framework for the Julia language")
304 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
305 code easy by supplying a framework for writing and running groups of
306 benchmarks as well as comparing benchmark results.")
307 (license license:expat)))
308
309 (define-public julia-blockarrays
310 (package
311 (name "julia-blockarrays")
312 (version "0.16.8")
313 (source
314 (origin
315 (method git-fetch)
316 (uri (git-reference
317 (url "https://github.com/JuliaArrays/BlockArrays.jl")
318 (commit (string-append "v" version))))
319 (file-name (git-file-name name version))
320 (sha256
321 (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1"))))
322 (build-system julia-build-system)
323 (propagated-inputs
324 `(("julia-arraylayouts" ,julia-arraylayouts)
325 ("julia-fillarrays" ,julia-fillarrays)))
326 (native-inputs
327 `(("julia-lazyarrays" ,julia-lazyarrays)
328 ("julia-offsetarrays" ,julia-offsetarrays)
329 ("julia-staticarrays" ,julia-staticarrays)))
330 (home-page "https://github.com/JuliaArrays/BlockArrays.jl")
331 (synopsis "BlockArrays for Julia")
332 (description "A block array is a partition of an array into blocks or
333 subarrays. This package has two purposes. Firstly, it defines an interface for
334 an @code{AbstractBlockArray} block arrays that can be shared among types
335 representing different types of block arrays. The advantage to this is that it
336 provides a consistent API for block arrays.
337 Secondly, it also implements two different type of block arrays that follow the
338 @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each
339 block contiguously while the type @code{PseudoBlockArray} stores the full matrix
340 contiguously. This means that @code{BlockArray} supports fast non copying
341 extraction and insertion of blocks while @code{PseudoBlockArray} supports fast
342 access to the full matrix to use in in for example a linear solver.")
343 (license license:expat)))
344
345 (define-public julia-blockbandedmatrices
346 (package
347 (name "julia-blockbandedmatrices")
348 (version "0.10.7")
349 (source
350 (origin
351 (method git-fetch)
352 (uri (git-reference
353 (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
354 (commit (string-append "v" version))))
355 (file-name (git-file-name name version))
356 (sha256
357 (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9"))))
358 (build-system julia-build-system)
359 (propagated-inputs
360 `(("julia-arraylayouts" ,julia-arraylayouts)
361 ("julia-bandedmatrices" ,julia-bandedmatrices)
362 ("julia-blockarrays" ,julia-blockarrays)
363 ("julia-fillarrays" ,julia-fillarrays)
364 ("julia-matrixfactorizations" ,julia-matrixfactorizations)))
365 (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
366 (synopsis "Block-banded matrices and banded-block-banded matrices")
367 (description "This package supports representing block-banded and
368 banded-block-banded matrices by only storing the entries in the non-zero bands.
369 A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
370 @code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
371 (license license:expat)))
372
373 (define-public julia-bson
374 (package
375 (name "julia-bson")
376 (version "0.3.3")
377 (source
378 (origin
379 (method git-fetch)
380 (uri (git-reference
381 (url "https://github.com/JuliaIO/BSON.jl")
382 (commit (string-append "v" version))))
383 (file-name (git-file-name name version))
384 (sha256
385 (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn"))))
386 (build-system julia-build-system)
387 (native-inputs
388 `(("julia-dataframes" ,julia-dataframes)))
389 (home-page "https://github.com/JuliaIO/BSON.jl")
390 (synopsis "Binary JSON serialisation format")
391 (description "@code{BSON.jl} is a Julia package for working with the Binary
392 JSON serialisation format. It can be used as a general store for Julia data
393 structures.")
394 (license license:expat)))
395
396 (define-public julia-bufferedstreams
397 (package
398 (name "julia-bufferedstreams")
399 (version "1.0.0")
400 (source
401 (origin
402 (method git-fetch)
403 (uri (git-reference
404 (url "https://github.com/BioJulia/BufferedStreams.jl")
405 (commit (string-append "v" version))))
406 (file-name (git-file-name name version))
407 (sha256
408 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
409 (build-system julia-build-system)
410 ;; The package is old and tests are using undefined functions. They also
411 ;; freeze, see
412 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
413 (arguments
414 '(#:tests? #f
415 #:julia-package-name "BufferedStreams"
416 #:julia-package-uuid "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"))
417 (propagated-inputs `(("julia-compat" ,julia-compat)))
418 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
419 (synopsis "Fast composable IO streams")
420 (description "@code{BufferedStreams.jl} provides buffering for IO
421 operations. It can wrap any @code{IO} type automatically making incremental
422 reading and writing faster.")
423 (license license:expat)))
424
425 (define-public julia-calculus
426 (package
427 (name "julia-calculus")
428 (version "0.5.1")
429 (source
430 (origin
431 (method git-fetch)
432 (uri (git-reference
433 (url "https://github.com/JuliaMath/Calculus.jl")
434 (commit (string-append "v" version))))
435 (file-name (git-file-name name version))
436 (sha256
437 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
438 (build-system julia-build-system)
439 (home-page "https://github.com/JuliaMath/Calculus.jl")
440 (synopsis "Common utilities for automatic differentiation")
441 (description "This package provides tools for working with the basic
442 calculus operations of differentiation and integration. The @code{Calculus}
443 package produces approximate derivatives by several forms of finite
444 differencing or produces exact derivative using symbolic differentiation. It
445 can also be used to compute definite integrals by different numerical
446 methods.")
447 (license license:expat)))
448
449 (define-public julia-categoricalarrays
450 (package
451 (name "julia-categoricalarrays")
452 (version "0.9.7")
453 (source
454 (origin
455 (method git-fetch)
456 (uri (git-reference
457 (url "https://github.com/JuliaData/CategoricalArrays.jl")
458 (commit (string-append "v" version))))
459 (file-name (git-file-name name version))
460 (sha256
461 (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x"))))
462 (build-system julia-build-system)
463 (native-inputs
464 `(("julia-pooledarrays" ,julia-pooledarrays)))
465 (propagated-inputs
466 `(("julia-dataapi" ,julia-dataapi)
467 ("julia-json" ,julia-json)
468 ("julia-json3" ,julia-json3)
469 ("julia-missings" ,julia-missings)
470 ("julia-recipesbase" ,julia-recipesbase)
471 ("julia-structtypes" ,julia-structtypes)))
472 (home-page "https://github.com/JuliaData/CategoricalArrays.jl")
473 (synopsis "Arrays for working with categorical data")
474 (description "This package provides tools for working with categorical
475 variables, both with unordered (nominal variables) and ordered categories
476 (ordinal variables), optionally with missing values.")
477 (license license:expat)))
478
479 (define-public julia-chainrules
480 (package
481 (name "julia-chainrules")
482 (version "1.1.0")
483 (source
484 (origin
485 (method git-fetch)
486 (uri (git-reference
487 (url "https://github.com/JuliaDiff/ChainRules.jl")
488 (commit (string-append "v" version))))
489 (file-name (git-file-name name version))
490 (sha256
491 (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70"))))
492 (build-system julia-build-system)
493 (inputs ;required for test
494 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
495 ("julia-finitedifferences" ,julia-finitedifferences)
496 ("julia-nanmath" ,julia-nanmath)
497 ("julia-specialfunctions" ,julia-specialfunctions)))
498 (propagated-inputs
499 `(("julia-chainrulescore" ,julia-chainrulescore)
500 ("julia-compat" ,julia-compat)
501 ("julia-reexport" ,julia-reexport)
502 ("julia-requires" ,julia-requires)))
503 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
504 (synopsis "Common utilities for automatic differentiation")
505 (description "The is package provides a variety of common utilities that
506 can be used by downstream automatic differentiation (AD) tools to define and
507 execute forward-, reverse-, and mixed-mode primitives.")
508 (license license:expat)))
509
510 (define-public julia-chainrulescore
511 (package
512 (name "julia-chainrulescore")
513 (version "1.0.2")
514 (source
515 (origin
516 (method git-fetch)
517 (uri (git-reference
518 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
519 (commit (string-append "v" version))))
520 (file-name (git-file-name name version))
521 (sha256
522 (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb"))))
523 (build-system julia-build-system)
524 (inputs ;required for tests
525 `(("julia-benchmarktools" ,julia-benchmarktools)
526 ("julia-staticarrays" ,julia-staticarrays)))
527 (propagated-inputs
528 `(("julia-compat" ,julia-compat)))
529 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
530 (synopsis "Common utilities used by downstream automatic differentiation tools")
531 (description "The package provides a light-weight dependency for defining
532 sensitivities for functions without the need to depend on ChainRules itself.")
533 (license license:expat)))
534
535 (define-public julia-chainrulestestutils
536 (package
537 (name "julia-chainrulestestutils")
538 (version "1.2.3")
539 (source
540 (origin
541 (method git-fetch)
542 (uri (git-reference
543 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
544 (commit (string-append "v" version))))
545 (file-name (git-file-name name version))
546 (sha256
547 (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9"))))
548 (build-system julia-build-system)
549 (propagated-inputs
550 `(("julia-chainrulescore" ,julia-chainrulescore)
551 ("julia-compat" ,julia-compat)
552 ("julia-finitedifference" ,julia-finitedifferences)))
553 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
554 (synopsis "Common utilities used by downstream automatic differentiation tools")
555 (description "This package is designed to help in testing
556 @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
557 entry points are @code{ChainRulesTestUtils.frule_test},
558 @code{ChainRulesTestUtils.rrule_test}, and
559 @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
560 rules against numerical differentiation (using @code{FiniteDifferences.jl}).
561
562 @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
563 can be a test-only dependency, allowing it to have potentially heavy
564 dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
565 (license license:expat)))
566
567 (define-public julia-codeczlib
568 (package
569 (name "julia-codeczlib")
570 (version "0.7.0")
571 (source
572 (origin
573 (method git-fetch)
574 (uri (git-reference
575 (url "https://github.com/JuliaIO/CodecZlib.jl")
576 (commit (string-append "v" version))))
577 (file-name (git-file-name name version))
578 (sha256
579 (base32 "0xm603nylkwk4bzx66zv1g3syzrvn3jh9spdx7kvcvgszzyrrgh4"))))
580 (build-system julia-build-system)
581 (arguments
582 `(#:phases
583 (modify-phases %standard-phases
584 (add-before 'reset-gzip-timestamps 'make-files-writable
585 (lambda* (#:key outputs #:allow-other-keys)
586 (let ((out (assoc-ref outputs "out")))
587 (for-each make-file-writable
588 (find-files out "\\.gz$"))
589 #t))))))
590 (propagated-inputs
591 `(("julia-zlib-jll" ,julia-zlib-jll)
592 ("julia-transcodingstreams" ,julia-transcodingstreams)))
593 (home-page "https://github.com/JuliaIO/CodecZlib.jl")
594 (synopsis "Zlib codecs for @code{TranscodingStreams.jl}")
595 (description "This package provides zlib codecs for
596 @code{TranscodingStreams.jl}.")
597 (license license:expat)))
598
599 (define-public julia-colors
600 (package
601 (name "julia-colors")
602 (version "0.12.8")
603 (source
604 (origin
605 (method git-fetch)
606 (uri (git-reference
607 (url "https://github.com/JuliaGraphics/Colors.jl")
608 (commit (string-append "v" version))))
609 (file-name (git-file-name name version))
610 (sha256
611 (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
612 (build-system julia-build-system)
613 (propagated-inputs
614 `(("julia-colortypes" ,julia-colortypes)
615 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
616 ("julia-reexport" ,julia-reexport)))
617 (home-page "https://github.com/JuliaGraphics/Colors.jl")
618 (synopsis "Tools for dealing with color")
619 (description "This package provides a wide array of functions for dealing
620 with color. This includes conversion between colorspaces, measuring distance
621 between colors, simulating color blindness, parsing colors, and generating
622 color scales for graphics.")
623 (license license:expat)))
624
625 (define-public julia-colorschemes
626 (package
627 (name "julia-colorschemes")
628 (version "3.15.0")
629 (source
630 (origin
631 (method git-fetch)
632 (uri (git-reference
633 (url "https://github.com/JuliaGraphics/ColorSchemes.jl")
634 (commit (string-append "v" version))))
635 (file-name (git-file-name name version))
636 (sha256
637 (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq"))))
638 (build-system julia-build-system)
639 (propagated-inputs
640 `(("julia-colors" ,julia-colors)
641 ("julia-colortypes" ,julia-colortypes)
642 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
643 ("julia-staticarrays" ,julia-staticarrays)))
644 (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl")
645 (synopsis "Colorschemes, colormaps, gradients, and palettes")
646 (description "This package provides a collection of colorschemes.")
647 (license license:expat)))
648
649 (define-public julia-colortypes
650 (package
651 (name "julia-colortypes")
652 (version "0.11.0")
653 (source
654 (origin
655 (method git-fetch)
656 (uri (git-reference
657 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
658 (commit (string-append "v" version))))
659 (file-name (git-file-name name version))
660 (sha256
661 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
662 (build-system julia-build-system)
663 (propagated-inputs
664 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
665 (native-inputs
666 `(("julia-documenter" ,julia-documenter)))
667 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
668 (synopsis "Basic color types and constructor")
669 (description "This minimalistic package serves as the foundation for
670 working with colors in Julia. It defines basic color types and their
671 constructors, and sets up traits and show methods to make them easier to work
672 with.")
673 (license license:expat)))
674
675 (define-public julia-colorvectorspace
676 (package
677 (name "julia-colorvectorspace")
678 (version "0.9.7")
679 (source
680 (origin
681 (method git-fetch)
682 (uri (git-reference
683 (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
684 (commit (string-append "v" version))))
685 (file-name (git-file-name name version))
686 (sha256
687 (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi"))))
688 (build-system julia-build-system)
689 (propagated-inputs
690 `(("julia-colortypes" ,julia-colortypes)
691 ("julia-specialfunctions" ,julia-specialfunctions)
692 ("julia-tensorcore" ,julia-tensorcore)))
693 (native-inputs
694 `(("julia-colors" ,julia-colors)))
695 (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
696 (synopsis "Treat colors as n-vectors for the purposes of arithmetic")
697 (description "This package is an add-on to @code{ColorTypes.jl} and provides
698 fast mathematical operations for objects with types such as RGB and Gray.
699 Specifically, with this package both grayscale and RGB colors are treated as if
700 they are points in a normed vector space.")
701 (license license:expat)))
702
703 (define-public julia-combinatorics
704 (package
705 (name "julia-combinatorics")
706 (version "1.0.2")
707 (source
708 (origin
709 (method git-fetch)
710 (uri (git-reference
711 (url "https://github.com/JuliaMath/Combinatorics.jl")
712 (commit (string-append "v" version))))
713 (file-name (git-file-name name version))
714 (sha256
715 (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
716 (build-system julia-build-system)
717 (home-page "https://github.com/JuliaMath/Combinatorics.jl")
718 (synopsis "Combinatorics library for Julia")
719 (description "This package provides a combinatorics library for Julia,
720 focusing mostly (as of now) on enumerative combinatorics and permutations.")
721 (license license:expat)))
722
723 (define-public julia-commonsubexpressions
724 (package
725 (name "julia-commonsubexpressions")
726 (version "0.3.0")
727 (source
728 (origin
729 (method git-fetch)
730 (uri (git-reference
731 (url "https://github.com/rdeits/CommonSubexpressions.jl")
732 (commit (string-append "v" version))))
733 (file-name (git-file-name name version))
734 (sha256
735 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
736 (build-system julia-build-system)
737 (propagated-inputs
738 `(("julia-macrotools" ,julia-macrotools)))
739 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
740 (synopsis "@code{@@cse} macro for Julia")
741 (description "This package provides the @code{@@cse} macro, which performs
742 common subexpression elimination.")
743 (license license:expat)))
744
745 (define-public julia-compat
746 (package
747 (name "julia-compat")
748 (version "3.39.0")
749 (source
750 (origin
751 (method git-fetch)
752 (uri (git-reference
753 (url "https://github.com/JuliaLang/Compat.jl")
754 (commit (string-append "v" version))))
755 (file-name (git-file-name name version))
756 (sha256
757 (base32 "0qzvaqi5gqgc747fnajbvvf5vqbh6cwykwky00c7glvmvdsgk3z0"))))
758 (build-system julia-build-system)
759 (home-page "https://github.com/JuliaLang/Compat.jl")
760 (synopsis "Compatibility across Julia versions")
761 (description "The Compat package is designed to ease interoperability
762 between older and newer versions of the Julia language. The Compat package
763 provides a macro that lets you use the latest syntax in a backwards-compatible
764 way.")
765 (license license:expat)))
766
767 (define-public julia-configurations
768 (package
769 (name "julia-configurations")
770 (version "0.16.4")
771 (source
772 (origin
773 (method git-fetch)
774 (uri (git-reference
775 (url "https://github.com/Roger-luo/Configurations.jl")
776 (commit (string-append "v" version))))
777 (file-name (git-file-name name version))
778 (sha256
779 (base32 "1b23p0zk8dx2sf01cnw177mqci7qd81b9s32ixz9clsh0r0icl1b"))))
780 (build-system julia-build-system)
781 (arguments
782 `(#:phases
783 (modify-phases %standard-phases
784 (add-after 'link-depot 'fix-tests
785 (lambda _
786 (substitute* "test/runtests.jl"
787 (("option.toml") "test/option.toml"))
788 #t))
789 (add-after 'link-depot 'dont-use-exproniconlite
790 (lambda _
791 (substitute* '("Project.toml"
792 "src/Configurations.jl"
793 "test/runtests.jl")
794 (("ExproniconLite") "Expronicon"))
795 (substitute* "Project.toml"
796 (("55351af7-c7e9-48d6-89ff-24e801d99491")
797 "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"))
798 #t)))))
799 (propagated-inputs
800 `(("julia-crayons" ,julia-crayons)
801 ("julia-expronicon" ,julia-expronicon)
802 ("julia-orderedcollections" ,julia-orderedcollections)))
803 (home-page "https://configurations.rogerluo.dev/stable/")
804 (synopsis "Tools for options and configurations in Julia")
805 (description "@code{Configurations.jl} provides a macro @code{@@option} to
806 let you define @code{structs} to represent options/configurations, and serialize
807 between different option/configuration file formats such as @code{TOML}.")
808 (license license:expat)))
809
810 (define-public julia-constructionbase
811 (package
812 (name "julia-constructionbase")
813 (version "1.3.0")
814 (source
815 (origin
816 (method git-fetch)
817 (uri (git-reference
818 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
819 (commit (string-append "v" version))))
820 (file-name (git-file-name name version))
821 (sha256
822 (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q"))))
823 (build-system julia-build-system)
824 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
825 (synopsis "Primitive functions for construction of objects")
826 (description "This very lightweight package provides primitive functions
827 for construction of objects.")
828 (license license:expat)))
829
830 (define-public julia-coordinatetransformations
831 (package
832 (name "julia-coordinatetransformations")
833 (version "0.6.1")
834 (source
835 (origin
836 (method git-fetch)
837 (uri (git-reference
838 (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
839 (commit (string-append "v" version))))
840 (file-name (git-file-name name version))
841 (sha256
842 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d"))))
843 (build-system julia-build-system)
844 (propagated-inputs
845 `(("julia-staticarrays" ,julia-staticarrays)))
846 (native-inputs
847 `(("julia-documenter" ,julia-documenter)
848 ("julia-forwarddiff" ,julia-forwarddiff)
849 ("julia-unitful" ,julia-unitful)))
850 (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
851 (synopsis "Coordinate transformations in Julia")
852 (description "@code{CoordinateTransformations} is a Julia package to manage
853 simple or complex networks of coordinate system transformations.
854 Transformations can be easily applied, inverted, composed, and differentiated
855 (both with respect to the input coordinates and with respect to transformation
856 parameters such as rotation angle). Transformations are designed to be
857 light-weight and efficient enough for, e.g., real-time graphical applications,
858 while support for both explicit and automatic differentiation makes it easy to
859 perform optimization and therefore ideal for computer vision applications such
860 as SLAM (simultaneous localization and mapping).")
861 (license license:expat)))
862
863 (define-public julia-crayons
864 (package
865 (name "julia-crayons")
866 (version "4.0.4")
867 (source
868 (origin
869 (method git-fetch)
870 (uri (git-reference
871 (url "https://github.com/KristofferC/Crayons.jl")
872 (commit (string-append "v" version))))
873 (file-name (git-file-name name version))
874 (sha256
875 (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
876 (build-system julia-build-system)
877 (home-page "https://github.com/KristofferC/Crayons.jl")
878 (synopsis "Colored and styled strings for terminals")
879 (description "Crayons is a package that makes it simple to write strings in
880 different colors and styles to terminals. It supports the 16 system colors,
881 both the 256 color and 24 bit true color extensions, and the different text
882 styles available to terminals.")
883 (license license:expat)))
884
885 (define-public julia-dataapi
886 (package
887 (name "julia-dataapi")
888 (version "1.7.0")
889 (source
890 (origin
891 (method git-fetch)
892 (uri (git-reference
893 (url "https://github.com/JuliaData/DataAPI.jl")
894 (commit (string-append "v" version))))
895 (file-name (git-file-name name version))
896 (sha256
897 (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7"))))
898 (build-system julia-build-system)
899 (home-page "https://github.com/JuliaData/DataAPI.jl")
900 (synopsis "Data-focused namespace for packages to share functions")
901 (description "This package provides a namespace for data-related generic
902 function definitions to solve the optional dependency problem; packages wishing
903 to share and/or extend functions can avoid depending directly on each other by
904 moving the function definition to DataAPI.jl and each package taking a
905 dependency on it.")
906 (license license:expat)))
907
908 (define-public julia-dataframes
909 (package
910 (name "julia-dataframes")
911 (version "1.2.2")
912 (source
913 (origin
914 (method git-fetch)
915 (uri (git-reference
916 (url "https://github.com/JuliaData/DataFrames.jl")
917 (commit (string-append "v" version))))
918 (file-name (git-file-name name version))
919 (sha256
920 (base32 "1bk0amrghgjrkyn1mm4ac23swwbgszl1d0qyl9137qj5zvv9dasp"))))
921 (build-system julia-build-system)
922 (arguments
923 `(#:phases
924 (modify-phases %standard-phases
925 (add-after 'link-depot 'skip-failing-test
926 (lambda _
927 ;; Tests with non-standard colors.
928 (substitute* "test/show.jl"
929 (("test (sprint\\(show, df, context=:color=>true)" _ test)
930 (string-append "test_nowarn " test)))
931 (substitute* "test/io.jl"
932 (("testset \\\"improved.*" all)
933 (string-append all "return\n")))
934 (substitute* "test/join.jl"
935 (("test (levels\\(outerjoin\\(B)" _ test)
936 (string-append "test_nowarn " test)))
937 #t)))))
938 (propagated-inputs
939 `(("julia-dataapi" ,julia-dataapi)
940 ("julia-invertedindices" ,julia-invertedindices)
941 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
942 ("julia-missings" ,julia-missings)
943 ("julia-pooledarrays" ,julia-pooledarrays)
944 ("julia-prettytables" ,julia-prettytables)
945 ("julia-reexport" ,julia-reexport)
946 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
947 ("julia-tables" ,julia-tables)
948 ("julia-tabletraits" ,julia-tabletraits)))
949 (native-inputs
950 `(("julia-categoricalarrays" ,julia-categoricalarrays)
951 ("julia-combinatorics" ,julia-combinatorics)
952 ("julia-datastructures" ,julia-datastructures)
953 ("julia-datavalues" ,julia-datavalues)
954 ("julia-offsetarrays" ,julia-offsetarrays)
955 ("julia-unitful" ,julia-unitful)))
956 (home-page "https://dataframes.juliadata.org/stable/")
957 (synopsis "In-memory tabular data")
958 (description "This package provides a set of tools for working with tabular
959 data in Julia. Its design and functionality are similar to those of Pandas from
960 Python or @code{data.frame}, @code{data.table} and @code{dplyr} from R, making
961 it a great general purpose data science tool, especially for those coming to
962 Julia from R or Python.")
963 (license license:expat)))
964
965 (define-public julia-datastructures
966 (package
967 (name "julia-datastructures")
968 (version "0.18.9")
969 (source
970 (origin
971 (method git-fetch)
972 (uri (git-reference
973 (url "https://github.com/JuliaCollections/DataStructures.jl")
974 (commit (string-append "v" version))))
975 (file-name (git-file-name name version))
976 (sha256
977 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
978 (propagated-inputs
979 `(("julia-compat" ,julia-compat)
980 ("julia-orderedcollections" ,julia-orderedcollections)))
981 (build-system julia-build-system)
982 (arguments
983 `(#:phases
984 ,@(if (target-x86-32?)
985 '((modify-phases %standard-phases
986 (add-after 'unpack 'remove-failing-test-i686
987 (lambda _
988 ;; The evaluation returns the correct value,
989 ;; Evaluated: "Accumulator(1 => 3, 3 => 4)"
990 ;; but, for some reasons, is considered as failed.
991 (substitute* "test/test_accumulator.jl"
992 (("@test sprint\\(show,Accumulator\\(1 => 3, 3 => 4\\)\\)")
993 "@test_broken sprint(show, Accumulator(1 => 3, 3 => 4))"))))))
994 '(%standard-phases))))
995 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
996 (synopsis "Julia module providing different data structures")
997 (description "This package implements a variety of data structures,
998 including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
999 @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
1000 (license license:expat)))
1001
1002 (define-public julia-datavalueinterfaces
1003 (package
1004 (name "julia-datavalueinterfaces")
1005 (version "1.0.0")
1006 (source
1007 (origin
1008 (method git-fetch)
1009 (uri (git-reference
1010 (url "https://github.com/queryverse/DataValueInterfaces.jl")
1011 (commit (string-append "v" version))))
1012 (file-name (git-file-name name version))
1013 (sha256
1014 (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"))))
1015 (build-system julia-build-system)
1016 (home-page "https://github.com/queryverse/DataValueInterfaces.jl")
1017 (synopsis "Interface for DataValues.jl")
1018 (description "This package allows a few \"forward\" definitions for the
1019 @code{DataValues.jl} package that other packages can utilize for integration
1020 without having to take direct dependencies.")
1021 (license license:expat)))
1022
1023 (define-public julia-datavalues
1024 (package
1025 (name "julia-datavalues")
1026 (version "0.4.13")
1027 (source
1028 (origin
1029 (method git-fetch)
1030 (uri (git-reference
1031 (url "https://github.com/queryverse/DataValues.jl")
1032 (commit (string-append "v" version))))
1033 (file-name (git-file-name name version))
1034 (sha256
1035 (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
1036 (build-system julia-build-system)
1037 (arguments
1038 `(#:tests? #f ; Tests need upgrading with newer Julia version.
1039 #:phases
1040 (modify-phases %standard-phases
1041 (add-after 'link-depot 'skip-known-failing-tests
1042 (lambda _
1043 ;; See upstream report:
1044 ;; https://github.com/queryverse/DataValues.jl/issues/83
1045 (substitute* "test/array/test_reduce.jl"
1046 ((".*DataValue\\(mapreduce.*") "")
1047 ((".*DataValue\\(method\\(f.*") ""))
1048 #t)))))
1049 (propagated-inputs
1050 `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces)))
1051 (home-page "https://github.com/queryverse/DataValues.jl")
1052 (synopsis "Missing values for Julia")
1053 (description "This package provides the type @code{DataValue} that is used
1054 to represent missing data.")
1055 (license license:expat)))
1056
1057 (define-public julia-deepdiffs
1058 (package
1059 (name "julia-deepdiffs")
1060 (version "1.2.0")
1061 (source
1062 (origin
1063 (method git-fetch)
1064 (uri (git-reference
1065 (url "https://github.com/ssfrr/DeepDiffs.jl")
1066 (commit (string-append "v" version))))
1067 (file-name (git-file-name name version))
1068 (sha256
1069 (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds"))))
1070 (build-system julia-build-system)
1071 (home-page "https://github.com/ssfrr/DeepDiffs.jl")
1072 (synopsis "Compute and pretty-print diffs for data structures")
1073 (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function,
1074 which finds and displays differences (diffs) between Julia data structures. It
1075 supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing
1076 dictionaries where values associated with a particular key may change,
1077 @code{deepdiff} will recurse into value to provide a more detailed diff.")
1078 (license license:expat)))
1079
1080 (define-public julia-dictionaries
1081 (package
1082 (name "julia-dictionaries")
1083 (version "0.3.10")
1084 (source
1085 (origin
1086 (method git-fetch)
1087 (uri (git-reference
1088 (url "https://github.com/andyferris/Dictionaries.jl")
1089 (commit (string-append "v" version))))
1090 (file-name (git-file-name name version))
1091 (sha256
1092 (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5"))))
1093 (build-system julia-build-system)
1094 (propagated-inputs
1095 `(("julia-indexing" ,julia-indexing)))
1096 (home-page "https://github.com/andyferris/Dictionaries.jl")
1097 (synopsis "Alternative interface for dictionaries in Julia")
1098 (description "This package provides an alternative interface for
1099 dictionaries in Julia, for improved productivity and performance.")
1100 (license license:expat)))
1101
1102 (define-public julia-distances
1103 (package
1104 (name "julia-distances")
1105 (version "0.10.3")
1106 (source
1107 (origin
1108 (method git-fetch)
1109 (uri (git-reference
1110 (url "https://github.com/JuliaStats/Distances.jl")
1111 (commit (string-append "v" version))))
1112 (file-name (git-file-name name version))
1113 (sha256
1114 (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
1115 (build-system julia-build-system)
1116 (arguments
1117 `(#:phases
1118 (modify-phases %standard-phases
1119 (add-after 'link-depot 'skip-flakey-tests
1120 (lambda _
1121 ;; Some combination of these tests fail nondeterministically
1122 ;; each of the times this package is built.
1123 (substitute* "test/test_dists.jl"
1124 (("test dyz ≥") "test_nowarn dyz ≥")
1125 (("test dist\\(y, x") "test_nowarn dist(y, x")
1126 (("test dist\\(z, x") "test_nowarn dist(z, x")
1127 (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
1128 (propagated-inputs
1129 `(("julia-statsapi" ,julia-statsapi)))
1130 (native-inputs
1131 `(("julia-offsetarrays" ,julia-offsetarrays)
1132 ("julia-unitful" ,julia-unitful)))
1133 (home-page "https://github.com/JuliaStats/Distances.jl")
1134 (synopsis "Julia package for evaluating distances (metrics) between vectors")
1135 (description "A Julia package for evaluating distances(metrics) between
1136 vectors. This package also provides optimized functions to compute column-wise
1137 and pairwise distances, which are often substantially faster than a
1138 straightforward loop implementation.")
1139 (license license:expat)))
1140
1141 (define-public julia-docstringextensions
1142 (package
1143 (name "julia-docstringextensions")
1144 (version "0.8.5")
1145 (source
1146 (origin
1147 (method git-fetch)
1148 (uri (git-reference
1149 (url "https://github.com/JuliaDocs/DocStringExtensions.jl")
1150 (commit (string-append "v" version))))
1151 (file-name (git-file-name name version))
1152 (sha256
1153 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
1154 (build-system julia-build-system)
1155 (arguments
1156 `(#:tests? #f)) ; Tests try to read SSL certificates.
1157 (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
1158 (synopsis "Extensions for Julia's docsystem")
1159 (description "This package provides a collection of useful extensions for
1160 Julia's built-in docsystem. These are features that are not yet mature enough
1161 to be considered for inclusion in Base, or that have sufficiently niche use
1162 cases that including them with the default Julia installation is not seen as
1163 valuable enough at this time.")
1164 (license license:expat)))
1165
1166 ;; By removing all the javascript and css downloads any HTML documentation
1167 ;; produced by this package will not be very useful.
1168 (define-public julia-documenter
1169 (package
1170 (name "julia-documenter")
1171 (version "0.27.7")
1172 (source
1173 (origin
1174 (method git-fetch)
1175 (uri (git-reference
1176 (url "https://github.com/JuliaDocs/Documenter.jl")
1177 (commit (string-append "v" version))))
1178 (file-name (git-file-name name version))
1179 (sha256
1180 (base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam"))))
1181 (build-system julia-build-system)
1182 (arguments
1183 `(#:phases
1184 (modify-phases %standard-phases
1185 (add-after 'link-depot 'patch-source
1186 (lambda* (#:key inputs #:allow-other-keys)
1187 (substitute* "src/Deps.jl"
1188 (("pip install")
1189 (string-append (assoc-ref inputs "python")
1190 "/bin/pip install")))
1191 #t))
1192 (add-after 'link-depot 'remove-javascript-downloads
1193 (lambda _
1194 (substitute* "src/Writers/HTMLWriter.jl"
1195 (("cdnjs.cloudflare.com") "example.com"))
1196 ;; Removing the javascript downloads causes these tests fail.
1197 (substitute* "test/examples/tests.jl"
1198 ((".*Main\\.examples_html_doc.*") "")
1199 ((".*Main\\.examples_html_mathjax3_doc.*") ""))
1200 #t)))))
1201 (propagated-inputs
1202 `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
1203 ("julia-docstringextensions" ,julia-docstringextensions)
1204 ("julia-iocapture" ,julia-iocapture)
1205 ("julia-json" ,julia-json)))
1206 (inputs
1207 `(("python" ,python-wrapper)))
1208 (native-inputs
1209 `(("git" ,git-minimal)
1210 ("julia-documentermarkdown" ,julia-documentermarkdown)
1211 ("julia-documentertools" ,julia-documentertools)))
1212 (home-page "https://juliadocs.github.io/Documenter.jl")
1213 (synopsis "Documentation generator for Julia")
1214 (description "This package provides a documentation generator for Julia.")
1215 (license license:expat)))
1216
1217 (define julia-documenter-bootstrap
1218 (package
1219 (inherit julia-documenter)
1220 (name "julia-documenter-bootstrap")
1221 (arguments
1222 (substitute-keyword-arguments (package-arguments julia-documenter)
1223 ((#:phases phases)
1224 `(modify-phases ,phases
1225 (delete 'patch-source)))
1226 ;; Not all dependencies available in bootstrap version.
1227 ((#:tests? _ #f) #f)))
1228 (inputs `())
1229 (native-inputs `())))
1230
1231 (define-public julia-documentermarkdown
1232 (package
1233 (name "julia-documentermarkdown")
1234 (version "0.2.2")
1235 (source
1236 (origin
1237 (method git-fetch)
1238 (uri (git-reference
1239 (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1240 (commit (string-append "v" version))))
1241 (file-name (git-file-name name version))
1242 (sha256
1243 (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
1244 (build-system julia-build-system)
1245 (inputs
1246 ;; We don't want to propagate the bootstrap version.
1247 ;; Cycle with Documenter.jl in later versions.
1248 `(("julia-documenter" ,julia-documenter-bootstrap)))
1249 (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1250 (synopsis "Documenter's Markdown")
1251 (description "This package enables the Markdown / MkDocs backend of
1252 @code{Documenter.jl}.")
1253 (license license:expat)))
1254
1255 (define-public julia-documentertools
1256 (package
1257 (name "julia-documentertools")
1258 (version "0.1.13")
1259 (source
1260 (origin
1261 (method git-fetch)
1262 (uri (git-reference
1263 (url "https://github.com/JuliaDocs/DocumenterTools.jl")
1264 (commit (string-append "v" version))))
1265 (file-name (git-file-name name version))
1266 (sha256
1267 (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
1268 (build-system julia-build-system)
1269 (arguments
1270 `(#:tests? #f)) ; Tests require network.
1271 (inputs
1272 ;; We don't want to propagate the bootstrap version.
1273 ;; Cycle with Documenter.jl in later versions.
1274 `(("julia-documenter" ,julia-documenter-bootstrap)))
1275 (propagated-inputs
1276 `(("julia-docstringextensions" ,julia-docstringextensions)
1277 ("julia-gumbo" ,julia-gumbo)
1278 ("julia-sass" ,julia-sass)))
1279 (native-inputs
1280 `(("julia-example" ,julia-example)))
1281 (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
1282 (synopsis "Extra tools for setting up Documenter.jl")
1283 (description "This package contains utilities for setting up documentation
1284 generation with @code{Documenter.jl}.")
1285 (license license:expat)))
1286
1287 (define-public julia-diffresults
1288 (package
1289 (name "julia-diffresults")
1290 (version "1.0.3")
1291 (source
1292 (origin
1293 (method git-fetch)
1294 (uri (git-reference
1295 (url "https://github.com/JuliaDiff/DiffResults.jl")
1296 (commit (string-append "v" version))))
1297 (file-name (git-file-name name version))
1298 (sha256
1299 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
1300 (propagated-inputs
1301 `(("julia-staticarrays" ,julia-staticarrays)))
1302 (build-system julia-build-system)
1303 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
1304 (synopsis "In-place differentiation methods of primal values at multi-order")
1305 (description "This package provides the @code{DiffResult} type, which can
1306 be passed to in-place differentiation methods instead of an output buffer.")
1307 (license license:expat)))
1308
1309 (define-public julia-diffrules
1310 (package
1311 (name "julia-diffrules")
1312 (version "1.0.2")
1313 (source
1314 (origin
1315 (method git-fetch)
1316 (uri (git-reference
1317 (url "https://github.com/JuliaDiff/DiffRules.jl")
1318 (commit (string-append "v" version))))
1319 (file-name (git-file-name name version))
1320 (sha256
1321 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
1322 (propagated-inputs
1323 `(("julia-nanmath" ,julia-nanmath)
1324 ("julia-specialfunctions" ,julia-specialfunctions)))
1325 (build-system julia-build-system)
1326 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
1327 (synopsis "Primitive differentiation rules")
1328 (description "This package provides primitive differentiation rules that
1329 can be composed via various formulations of the chain rule. Using
1330 @code{DiffRules}, new differentiation rules can defined, query whether or not
1331 a given rule exists, and symbolically apply rules to simple Julia expressions.")
1332 (license license:expat)))
1333
1334 (define-public julia-difftests
1335 (package
1336 (name "julia-difftests")
1337 (version "0.1.1")
1338 (source
1339 (origin
1340 (method git-fetch)
1341 (uri (git-reference
1342 (url "https://github.com/JuliaDiff/DiffTests.jl")
1343 (commit (string-append "v" version))))
1344 (file-name (git-file-name name version))
1345 (sha256
1346 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
1347 (build-system julia-build-system)
1348 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
1349 (synopsis "Common test functions for differentiation tools")
1350 (description "This package contains a common suite of test functions for
1351 stressing the robustness of differentiation tools.")
1352 (license license:expat)))
1353
1354 (define-public julia-dualnumbers
1355 (package
1356 (name "julia-dualnumbers")
1357 (version "0.6.5")
1358 (source
1359 (origin
1360 (method git-fetch)
1361 (uri (git-reference
1362 (url "https://github.com/JuliaDiff/DualNumbers.jl")
1363 (commit (string-append "v" version))))
1364 (file-name (git-file-name name version))
1365 (sha256
1366 (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
1367 (build-system julia-build-system)
1368 (arguments
1369 `(#:phases
1370 (modify-phases %standard-phases
1371 (add-after 'link-depot 'adjust-test-suite
1372 (lambda _
1373 (substitute* "test/runtests.jl"
1374 ;; Seems to not play nicely with SpecialFunctions
1375 ((".*isempty.*") "")))))))
1376 (propagated-inputs
1377 `(("julia-calculus" ,julia-calculus)
1378 ("julia-nanmath" ,julia-nanmath)
1379 ("julia-specialfunctions" ,julia-specialfunctions)))
1380 (home-page "https://github.com/JuliaDiff/DualNumbers.jl")
1381 (synopsis "Represent dual numbers and for perform dual algebra")
1382 (description "The @code{DualNumbers} Julia package defines the @code{Dual}
1383 type to represent dual numbers, and supports standard mathematical operations on
1384 them. Conversions and promotions are defined to allow performing operations on
1385 combinations of dual numbers with predefined Julia numeric types.")
1386 (license license:expat)))
1387
1388 (define-public julia-ellipsisnotation
1389 (package
1390 (name "julia-ellipsisnotation")
1391 (version "1.1.0")
1392 (source
1393 (origin
1394 (method git-fetch)
1395 (uri (git-reference
1396 (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1397 (commit (string-append "v" version))))
1398 (file-name (git-file-name name version))
1399 (sha256
1400 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
1401 (build-system julia-build-system)
1402 (arguments
1403 `(#:phases
1404 (modify-phases %standard-phases
1405 (add-after 'link-depot 'adjust-test-suite
1406 (lambda _
1407 (substitute* "test/runtests.jl"
1408 ;; Seems to not play nicely with Julia-1.6.
1409 ((".*basic.jl.*") "")))))))
1410 (propagated-inputs
1411 `(("julia-arrayinterface" ,julia-arrayinterface)))
1412 (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1413 (synopsis "Elipsis notation implementation")
1414 (description "This implements the notation @code{..} for indexing arrays.
1415 It's similar to the Python @code{...} in that it means \"all of the columns
1416 before (or after)\".")
1417 (license license:expat)))
1418
1419 (define-public julia-example
1420 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
1421 (package
1422 (name "julia-example")
1423 (version "0.5.4") ;tag not created upstream
1424 (source
1425 (origin
1426 (method git-fetch)
1427 (uri (git-reference
1428 (url "https://github.com/JuliaLang/Example.jl")
1429 (commit commit)))
1430 (file-name (git-file-name name version))
1431 (sha256
1432 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
1433 (build-system julia-build-system)
1434 (home-page "https://github.com/JuliaLang/Example.jl")
1435 (synopsis "Module providing examples")
1436 (description "This package provides various examples.")
1437 (license license:expat))))
1438
1439 ;; ExproniconLite.jl is autogenerated from this package.
1440 (define-public julia-expronicon
1441 (package
1442 (name "julia-expronicon")
1443 (version "0.6.10")
1444 (source
1445 (origin
1446 (method git-fetch)
1447 (uri (git-reference
1448 (url "https://github.com/Roger-luo/Expronicon.jl")
1449 (commit (string-append "v" version))))
1450 (file-name (git-file-name name version))
1451 (sha256
1452 (base32 "0h8aaynqlxrkn8575k5vqmhzil4vvxchhf0bcxa6zwawp558gj2y"))))
1453 (build-system julia-build-system)
1454 (arguments
1455 `(#:phases
1456 (modify-phases %standard-phases
1457 (add-after 'link-depot 'skip-network-tests
1458 (lambda _
1459 (substitute* "test/runtests.jl"
1460 ;; This test tries to access the Julia package registry.
1461 ((".*expand\\.jl.*") "")))))))
1462 (propagated-inputs
1463 `(("julia-mlstyle" ,julia-mlstyle)))
1464 (native-inputs
1465 `(("julia-documenter" ,julia-documenter)))
1466 (home-page "https://expronicon.rogerluo.dev/dev/")
1467 (synopsis "Collective tools for metaprogramming on Julia Expr")
1468 (description "This package provides a collection of tools for
1469 metaprogramming on Julia Expr, the meta programming standard library for
1470 @code{MLStyle}.")
1471 (license license:expat)))
1472
1473 (define-public julia-exprtools
1474 (package
1475 (name "julia-exprtools")
1476 (version "0.1.6")
1477 (source
1478 (origin
1479 (method git-fetch)
1480 (uri (git-reference
1481 (url "https://github.com/invenia/ExprTools.jl")
1482 (commit (string-append "v" version))))
1483 (file-name (git-file-name name version))
1484 (sha256
1485 (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4"))))
1486 (build-system julia-build-system)
1487 (home-page "https://github.com/invenia/ExprTools.jl")
1488 (synopsis "Light-weight expression manipulation tools")
1489 (description "@code{ExprTools} provides tooling for working with Julia
1490 expressions during metaprogramming. This package aims to provide light-weight
1491 performant tooling without requiring additional package dependencies.")
1492 (license license:expat)))
1493
1494 (define-public julia-ffmpeg
1495 (package
1496 (name "julia-ffmpeg")
1497 (version "0.4.1")
1498 (source
1499 (origin
1500 (method git-fetch)
1501 (uri (git-reference
1502 (url "https://github.com/JuliaIO/FFMPEG.jl")
1503 (commit (string-append "v" version))))
1504 (file-name (git-file-name name version))
1505 (sha256
1506 (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b"))))
1507 (build-system julia-build-system)
1508 (propagated-inputs
1509 `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
1510 ("julia-x264-jll" ,julia-x264-jll)))
1511 (home-page "https://github.com/JuliaIO/FFMPEG.jl")
1512 (synopsis "Julia Package for ffmpeg")
1513 (description "This package is made to be included into packages that just
1514 need the ffmpeg binaries + executables, and don't want the overhead of
1515 @code{VideoIO.jl}.")
1516 (license license:expat)))
1517
1518 (define-public julia-fileio
1519 (package
1520 (name "julia-fileio")
1521 (version "1.9.1")
1522 (source
1523 (origin
1524 (method git-fetch)
1525 (uri (git-reference
1526 (url "https://github.com/JuliaIO/FileIO.jl")
1527 (commit (string-append "v" version))))
1528 (file-name (git-file-name name version))
1529 (sha256
1530 (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
1531 (build-system julia-build-system)
1532 (arguments
1533 `(#:phases
1534 (modify-phases %standard-phases
1535 (delete 'reset-gzip-timestamps)
1536 (add-after 'link-depot 'skip-network-tests
1537 (lambda _
1538 ;; These tests try to download audio/video files.
1539 (substitute* "test/query.jl"
1540 (("testset.*(MP4|OGG|MATROSKA).*" all)
1541 (string-append all "return\n")))
1542 (substitute* "test/loadsave.jl"
1543 (("testset.*CSVFiles.*" all)
1544 (string-append all "return\n")))
1545 ;; This test tries to download a Julia package.
1546 (substitute* "test/error_handling.jl"
1547 (("testset.*Not installed.*" all)
1548 (string-append all "return\n")))
1549 ;; This test tries to write to the store.
1550 ;; (Error says can't find User 0)
1551 (substitute* "test/runtests.jl"
1552 ((".*test_mimesave.*") "")))))))
1553 (propagated-inputs
1554 `(("julia-requires" ,julia-requires)))
1555 (native-inputs
1556 `(("julia-colortypes" ,julia-colortypes)
1557 ("julia-filepathsbase" ,julia-filepathsbase)
1558 ("julia-http" ,julia-http)))
1559 (home-page "https://github.com/JuliaIO/FileIO.jl")
1560 (synopsis "Main Package for IO, loading all different kind of files")
1561 (description "@code{FileIO} aims to provide a common framework for detecting
1562 file formats and dispatching to appropriate readers/writers. The two core
1563 functions in this package are called @code{load} and @code{save}, and offer
1564 high-level support for formatted files (in contrast with Julia's low-level
1565 @code{read} and @code{write}).")
1566 (license license:expat)))
1567
1568 (define-public julia-filepathsbase
1569 (package
1570 (name "julia-filepathsbase")
1571 (version "0.9.10")
1572 (source
1573 (origin
1574 (method git-fetch)
1575 (uri (git-reference
1576 (url "https://github.com/rofinn/FilePathsBase.jl")
1577 (commit (string-append "v" version))))
1578 (file-name (git-file-name name version))
1579 (sha256
1580 (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
1581 (build-system julia-build-system)
1582 (arguments
1583 `(#:tests? #f)) ; Cycle with JLSO.jl
1584 (home-page "https://github.com/rofinn/FilePathsBase.jl")
1585 (synopsis "Filesystem path types in Julia")
1586 (description "@code{FilePathsBase.jl} provides a type based approach to
1587 working with filesystem paths in Julia.")
1588 (license license:expat)))
1589
1590 (define-public julia-fillarrays
1591 (package
1592 (name "julia-fillarrays")
1593 (version "0.12.6")
1594 (source
1595 (origin
1596 (method git-fetch)
1597 (uri (git-reference
1598 (url "https://github.com/JuliaArrays/FillArrays.jl")
1599 (commit (string-append "v" version))))
1600 (file-name (git-file-name name version))
1601 (sha256
1602 (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz"))))
1603 (build-system julia-build-system)
1604 (inputs ;required by tests
1605 `(("julia-staticarrays" ,julia-staticarrays)))
1606 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
1607 (synopsis "Lazy matrix representation")
1608 (description "This package lazily represents matrices filled with
1609 a single entry, as well as identity matrices. This package exports the
1610 following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
1611 @code{Trues} and @code{Falses}.")
1612 (license license:expat)))
1613
1614 (define-public julia-finitediff
1615 (package
1616 (name "julia-finitediff")
1617 (version "2.8.1")
1618 (source
1619 (origin
1620 (method git-fetch)
1621 (uri (git-reference
1622 (url "https://github.com/JuliaDiff/FiniteDiff.jl")
1623 (commit (string-append "v" version))))
1624 (file-name (git-file-name name version))
1625 (sha256
1626 (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq"))))
1627 (build-system julia-build-system)
1628 (arguments
1629 `(#:phases
1630 (modify-phases %standard-phases
1631 (add-before 'check 'pre-check
1632 (lambda _
1633 ;; We don't want to run all the tests; the Downstream tests
1634 ;; try to download the package registry.
1635 (setenv "GROUP" "Core")
1636 #t)))))
1637 (propagated-inputs
1638 `(("julia-arrayinterface" ,julia-arrayinterface)
1639 ("julia-requires" ,julia-requires)
1640 ("julia-staticarrays" ,julia-staticarrays)))
1641 (native-inputs
1642 `(("julia-bandedmatrices" ,julia-bandedmatrices)
1643 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
1644 ("julia-safetestsets" ,julia-safetestsets)))
1645 (home-page "https://github.com/JuliaDiff/FiniteDiff.jl")
1646 (synopsis "Calculations of gradients, Jacobians, and Hessians")
1647 (description "This package is for calculating derivatives, gradients,
1648 Jacobians, Hessians, etc. numerically. This library is for maximizing speed
1649 while giving a usable interface to end users in a way that specializes on array
1650 types and sparsity.")
1651 (license license:expat)))
1652
1653 (define-public julia-finitedifferences
1654 (package
1655 (name "julia-finitedifferences")
1656 (version "0.12.17")
1657 (source
1658 (origin
1659 (method git-fetch)
1660 (uri (git-reference
1661 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
1662 (commit (string-append "v" version))))
1663 (file-name (git-file-name name version))
1664 (sha256
1665 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
1666 (build-system julia-build-system)
1667 (inputs
1668 `(("julia-benchmarktools" ,julia-benchmarktools)))
1669 (propagated-inputs
1670 `(("julia-chainrulescore" ,julia-chainrulescore)
1671 ("julia-richardson" ,julia-richardson)
1672 ("julia-staticarrays" ,julia-staticarrays)))
1673 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
1674 (synopsis "Estimates derivatives with finite differences")
1675 (description "This package calculates approximate derivatives numerically
1676 using finite difference.")
1677 (license license:expat)))
1678
1679 (define-public julia-fixedpointnumbers
1680 (package
1681 (name "julia-fixedpointnumbers")
1682 (version "0.8.4")
1683 (source
1684 (origin
1685 (method git-fetch)
1686 (uri (git-reference
1687 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
1688 (commit (string-append "v" version))))
1689 (file-name (git-file-name name version))
1690 (sha256
1691 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
1692 (build-system julia-build-system)
1693 (arguments
1694 `(#:phases
1695 (modify-phases %standard-phases
1696 (add-after 'link-depot 'disable-failing-test
1697 (lambda* (#:key outputs #:allow-other-keys)
1698 (substitute* "test/fixed.jl"
1699 ;; A deprecation warning is not thrown
1700 (("@test_logs.*:warn" all) (string-append "# " all)))
1701 #t)))))
1702 (propagated-inputs `(("julia-compat" ,julia-compat)))
1703 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
1704 (synopsis "Fixed point types for Julia")
1705 (description "@code{FixedPointNumbers.jl} implements fixed-point number
1706 types for Julia. A fixed-point number represents a fractional, or
1707 non-integral, number. In contrast with the more widely known floating-point
1708 numbers, with fixed-point numbers the decimal point doesn't \"float\":
1709 fixed-point numbers are effectively integers that are interpreted as being
1710 scaled by a constant factor. Consequently, they have a fixed number of
1711 digits (bits) after the decimal (radix) point.")
1712 (license license:expat)))
1713
1714 (define-public julia-formatting
1715 (package
1716 (name "julia-formatting")
1717 (version "0.4.2")
1718 (source
1719 (origin
1720 (method git-fetch)
1721 (uri (git-reference
1722 (url "https://github.com/JuliaIO/Formatting.jl")
1723 (commit (string-append "v" version))))
1724 (file-name (git-file-name name version))
1725 (sha256
1726 (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh"))))
1727 (build-system julia-build-system)
1728 (home-page "https://github.com/JuliaIO/Formatting.jl")
1729 (synopsis "Julia package to provide Python-like formatting support")
1730 (description "This package offers Python-style general formatting and
1731 c-style numerical formatting.")
1732 (license license:expat)))
1733
1734 (define-public julia-forwarddiff
1735 (package
1736 (name "julia-forwarddiff")
1737 (version "0.10.18")
1738 (source
1739 (origin
1740 (method git-fetch)
1741 (uri (git-reference
1742 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
1743 (commit (string-append "v" version))))
1744 (file-name (git-file-name name version))
1745 (sha256
1746 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
1747 (build-system julia-build-system)
1748 (inputs ;required for tests
1749 `(("julia-calculus" ,julia-calculus)
1750 ("julia-difftests" ,julia-difftests)))
1751 (propagated-inputs
1752 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
1753 ("julia-diffresults" ,julia-diffresults)
1754 ("julia-diffrules" ,julia-diffrules)
1755 ("julia-nanmath" ,julia-nanmath)
1756 ("julia-specialfunctions" ,julia-specialfunctions)
1757 ("julia-staticarrays" ,julia-staticarrays)))
1758 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
1759 (synopsis "Methods to take multidimensional derivatives")
1760 (description "This package implements methods to take derivatives,
1761 gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
1762 functions (or any callable object, really) using forward mode automatic
1763 differentiation (AD).")
1764 (license license:expat)))
1765
1766 (define-public julia-functionwrappers
1767 (package
1768 (name "julia-functionwrappers")
1769 (version "1.1.2")
1770 (source
1771 (origin
1772 (method git-fetch)
1773 (uri (git-reference
1774 (url "https://github.com/yuyichao/FunctionWrappers.jl")
1775 (commit (string-append "v" version))))
1776 (file-name (git-file-name name version))
1777 (sha256
1778 (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
1779 (build-system julia-build-system)
1780 (arguments
1781 `(#:phases
1782 (modify-phases %standard-phases
1783 (add-after 'link-depot 'adjust-tests
1784 (lambda _
1785 (substitute* "test/runtests.jl"
1786 (("testset \\\"Abstract.*" all)
1787 (string-append all "return\n"))))))))
1788 (home-page "https://github.com/yuyichao/FunctionWrappers.jl")
1789 (synopsis "Type stable and efficient wrapper of arbitrary functions")
1790 (description "This package provides a type stable and efficient wrapper of
1791 arbitrary functions.")
1792 (license license:expat)))
1793
1794 (define-public julia-functors
1795 (package
1796 (name "julia-functors")
1797 (version "0.2.7")
1798 (source
1799 (origin
1800 (method git-fetch)
1801 (uri (git-reference
1802 (url "https://github.com/FluxML/Functors.jl")
1803 (commit (string-append "v" version))))
1804 (file-name (git-file-name name version))
1805 (sha256
1806 (base32 "03ry1wn1y2jssq65l29bi6q4ki041aa6gl1nd2w6cgl00k2mrxf3"))))
1807 (build-system julia-build-system)
1808 (home-page "https://fluxml.ai/Functors.jl/stable/")
1809 (synopsis "Design pattern for structures as in machine learning")
1810 (description "This package provides tools to express a design pattern for
1811 dealing with large/ nested structures, as in machine learning and
1812 optimisation. For large machine learning models it can be cumbersome or
1813 inefficient to work with parameters as one big, flat vector, and structs help
1814 in managing complexity; but it is also desirable to easily operate over all
1815 parameters at once, e.g. for changing precision or applying an optimiser
1816 update step.")
1817 (license license:expat)))
1818
1819 (define-public julia-fuzzycompletions
1820 (package
1821 (name "julia-fuzzycompletions")
1822 (version "0.4.1")
1823 (source
1824 (origin
1825 (method git-fetch)
1826 (uri (git-reference
1827 (url "https://github.com/JunoLab/FuzzyCompletions.jl")
1828 (commit (string-append "v" version))))
1829 (file-name (git-file-name name version))
1830 (sha256
1831 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
1832 (build-system julia-build-system)
1833 (arguments
1834 `(#:phases
1835 (modify-phases %standard-phases
1836 (add-after 'link-depot 'skip-failing-test
1837 (lambda _
1838 (substitute* "test/runtests.jl"
1839 ((".*RPLE.*") "")))))))
1840 (home-page "https://github.com/JunoLab/FuzzyCompletions.jl")
1841 (synopsis "Fuzzy completion provider for Julia")
1842 (description
1843 "FuzzyCompletions provides fuzzy completions for a Julia runtime session.")
1844 (license license:expat)))
1845
1846 (define-public julia-genericlinearalgebra
1847 (package
1848 (name "julia-genericlinearalgebra")
1849 (version "0.2.5")
1850 (source
1851 (origin
1852 (method git-fetch)
1853 (uri (git-reference
1854 (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1855 (commit (string-append "v" version))))
1856 (file-name (git-file-name name version))
1857 (sha256
1858 (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
1859 (build-system julia-build-system)
1860 (arguments
1861 `(#:phases
1862 (modify-phases %standard-phases
1863 (add-after 'link-depot 'adjust-test-suite
1864 (lambda _
1865 (substitute* "test/runtests.jl"
1866 ((".*lapack.*") "")))))))
1867 (native-inputs
1868 `(("julia-quaternions" ,julia-quaternions)))
1869 (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1870 (synopsis "Generic numerical linear algebra")
1871 (description "The purpose of this package is partly to extend linear algebra
1872 functionality in base to cover generic element types, e.g. @code{BigFloat} and
1873 @code{Quaternion}, and partly to be a place to experiment with fast linear
1874 algebra routines written in Julia (except for optimized BLAS).")
1875 (license license:expat)))
1876
1877 (define-public julia-genericschur
1878 (package
1879 (name "julia-genericschur")
1880 (version "0.5.1")
1881 (source
1882 (origin
1883 (method git-fetch)
1884 (uri (git-reference
1885 (url "https://github.com/RalphAS/GenericSchur.jl")
1886 (commit (string-append "v" version))))
1887 (file-name (git-file-name name version))
1888 (sha256
1889 (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d"))))
1890 (build-system julia-build-system)
1891 (arguments
1892 `(#:phases
1893 (modify-phases %standard-phases
1894 (add-after 'link-depot 'adjust-test-suite
1895 (lambda _
1896 (substitute* "test/complex.jl"
1897 ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
1898 (("A = _example") "#A = _example")
1899 (("schurtest\\(A,20\\)") ""))
1900 (substitute* "test/runtests.jl"
1901 ;; Test errors relating to liblapack.so
1902 ((".*complex\\.jl.*") "")
1903 ((".*real\\.jl.*") "")
1904 ;; GenericSVD is deprecated upstream
1905 ((".*gordschur\\.jl.*") "")))))))
1906 (home-page "https://github.com/RalphAS/GenericSchur.jl")
1907 (synopsis "Schur decomposition of matrices with generic element types")
1908 (description "The Schur decomposition is the workhorse for eigensystem
1909 analysis of dense matrices. The diagonal eigen-decomposition of normal
1910 (especially Hermitian) matrices is an important special case, but for non-normal
1911 matrices the Schur form is often more useful.")
1912 (license license:expat)))
1913
1914 (define-public julia-geometrybasics
1915 (package
1916 (name "julia-geometrybasics")
1917 (version "0.4.1")
1918 (source
1919 (origin
1920 (method git-fetch)
1921 (uri (git-reference
1922 (url "https://github.com/JuliaGeometry/GeometryBasics.jl")
1923 (commit (string-append "v" version))))
1924 (file-name (git-file-name name version))
1925 (sha256
1926 (base32 "057j3hjpli3q5b98cqkpi4p10x2k9pyksrz62hjmv1kb5qzdvhsj"))))
1927 (build-system julia-build-system)
1928 (arguments
1929 `(#:phases
1930 (modify-phases %standard-phases
1931 (add-after 'link-depot 'remove-earcut
1932 (lambda _
1933 (substitute* '("Project.toml"
1934 "src/GeometryBasics.jl")
1935 ((".*EarCut.*") ""))
1936 #t))
1937 (add-after 'link-depot 'skip-incompatible-test
1938 (lambda _
1939 (substitute* "test/runtests.jl"
1940 (("@testset.*MetaT and heterogeneous data.*" all)
1941 (string-append all "return\n")))
1942 #t)))))
1943 (propagated-inputs
1944 `(("julia-itertools" ,julia-itertools)
1945 ("julia-staticarrays" ,julia-staticarrays)
1946 ("julia-structarrays" ,julia-structarrays)
1947 ("julia-tables" ,julia-tables)))
1948 (native-inputs
1949 `(("julia-offsetarrays" ,julia-offsetarrays)))
1950 (home-page "https://github.com/JuliaGeometry/GeometryBasics.jl")
1951 (synopsis "Basic Geometry Types")
1952 (description "This package aims to offer a standard set of Geometry types,
1953 which easily work with metadata, query frameworks on geometries and different
1954 memory layouts. The aim is to create a solid basis for Graphics/Plotting,
1955 finite elements analysis, Geo applications, and general geometry manipulations
1956 - while offering a Julian API, that still allows performant C-interop.")
1957 (license license:expat)))
1958
1959 (define-public julia-gr
1960 (package
1961 (name "julia-gr")
1962 (version "0.58.1")
1963 (source
1964 (origin
1965 (method git-fetch)
1966 (uri (git-reference
1967 (url "https://github.com/jheinen/GR.jl")
1968 (commit (string-append "v" version))))
1969 (file-name (git-file-name name version))
1970 (sha256
1971 (base32 "18zxa1w2wmrf44c5l10qbh99zjdp7h94gxlymh47cf5kj5fc4xmx"))))
1972 (build-system julia-build-system)
1973 (propagated-inputs
1974 `(("julia-gr-jll" ,julia-gr-jll)))
1975 (home-page "https://github.com/jheinen/GR.jl")
1976 (synopsis "Plotting for Julia based on GR")
1977 (description "This module provides a Julia interface to GR, a framework for
1978 visualisation applications.")
1979 (license license:expat)))
1980
1981 (define-public julia-graphics
1982 (package
1983 (name "julia-graphics")
1984 (version "1.1.0")
1985 (source
1986 (origin
1987 (method git-fetch)
1988 (uri (git-reference
1989 (url "https://github.com/JuliaGraphics/Graphics.jl")
1990 (commit (string-append "v" version))))
1991 (file-name (git-file-name name version))
1992 (sha256
1993 (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn"))))
1994 (build-system julia-build-system)
1995 (propagated-inputs
1996 `(("julia-colors" ,julia-colors)
1997 ("julia-nanmath" ,julia-nanmath)))
1998 (home-page "https://github.com/JuliaGraphics/Graphics.jl")
1999 (synopsis "Base graphics in Julia")
2000 (description "@code{Graphics.jl} is an abstraction layer for graphical
2001 operations in Julia.")
2002 (license license:expat)))
2003
2004 (define-public julia-gumbo
2005 (package
2006 (name "julia-gumbo")
2007 (version "0.8.0")
2008 (source
2009 (origin
2010 (method git-fetch)
2011 (uri (git-reference
2012 (url "https://github.com/JuliaWeb/Gumbo.jl")
2013 (commit (string-append "v" version))))
2014 (file-name (git-file-name name version))
2015 (sha256
2016 (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
2017 (build-system julia-build-system)
2018 (propagated-inputs
2019 `(("julia-abstracttrees" ,julia-abstracttrees)
2020 ("julia-gumbo-jll" ,julia-gumbo-jll)))
2021 (home-page "https://github.com/JuliaWeb/Gumbo.jl")
2022 (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
2023 (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
2024 library for parsing HTML.")
2025 (license license:expat)))
2026
2027 (define-public julia-http
2028 (package
2029 (name "julia-http")
2030 (version "0.9.12")
2031 (source
2032 (origin
2033 (method git-fetch)
2034 (uri (git-reference
2035 (url "https://github.com/JuliaWeb/HTTP.jl")
2036 (commit (string-append "v" version))))
2037 (file-name (git-file-name name version))
2038 (sha256
2039 (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk"))))
2040 (build-system julia-build-system)
2041 (arguments
2042 `(#:phases
2043 (modify-phases %standard-phases
2044 (add-before 'install 'disable-network-tests
2045 (lambda _
2046 (substitute* "test/runtests.jl"
2047 (("\"async.jl") "# \"async.jl")
2048 (("\"client.jl") "# \"client.jl"))
2049 (substitute* "test/aws4.jl"
2050 (("@testset.*HTTP.request with AWS authentication.*" all)
2051 (string-append all "return\n")))
2052 (substitute* "test/insert_layers.jl"
2053 (("@testset.*Inserted final layer runs handler.*" all)
2054 (string-append all "return\n")))
2055 (substitute* "test/multipart.jl"
2056 (("@testset \"Setting of Content-Type.*" all)
2057 (string-append all "return\n"))
2058 (("@testset \"Deprecation of .*" all)
2059 (string-append all "return\n")))
2060 (substitute* "test/websockets.jl"
2061 (("@testset.*External Host.*" all)
2062 (string-append all "return\n")))
2063 (substitute* "test/messages.jl"
2064 (("@testset.*Read methods.*" all)
2065 (string-append all "return\n"))
2066 (("@testset.*Body - .*" all)
2067 (string-append all "return\n"))
2068 (("@testset.*Write to file.*" all)
2069 (string-append all "return\n")))
2070 #t)))))
2071 (propagated-inputs
2072 `(("julia-inifile" ,julia-inifile)
2073 ("julia-mbedtls" ,julia-mbedtls)
2074 ("julia-uris" ,julia-uris)))
2075 ;; required for tests
2076 (inputs
2077 `(("julia-json" ,julia-json)
2078 ("julia-bufferedstreams" ,julia-bufferedstreams)))
2079 (home-page "https://juliaweb.github.io/HTTP.jl/")
2080 (synopsis "HTTP support for Julia")
2081 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
2082 implementing both a client and a server.")
2083 (license license:expat)))
2084
2085 (define-public julia-identityranges
2086 (package
2087 (name "julia-identityranges")
2088 (version "0.3.1")
2089 (source
2090 (origin
2091 (method git-fetch)
2092 (uri (git-reference
2093 (url "https://github.com/JuliaArrays/IdentityRanges.jl")
2094 (commit (string-append "v" version))))
2095 (file-name (git-file-name name version))
2096 (sha256
2097 (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml"))))
2098 (build-system julia-build-system)
2099 (propagated-inputs
2100 `(("julia-offsetarrays" ,julia-offsetarrays)))
2101 (home-page "https://github.com/JuliaArrays/IdentityRanges.jl")
2102 (synopsis "Ranges that preserve indices of views")
2103 (description "@code{IdentityRanges} are Julia-language a helper type for
2104 creating \"views\" of arrays. They are a custom type of AbstractUnitRange that
2105 makes it easy to preserve the indices of array views. The key property of an
2106 @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the
2107 type/package), and that they support arbitrary start/stop indices (i.e., not
2108 just starting at 1).")
2109 (license license:expat)))
2110
2111 (define-public julia-ifelse
2112 (package
2113 (name "julia-ifelse")
2114 (version "0.1.0")
2115 (source
2116 (origin
2117 (method git-fetch)
2118 (uri (git-reference
2119 (url "https://github.com/sciml/ifelse.jl")
2120 (commit (string-append "v" version))))
2121 (file-name (git-file-name name version))
2122 (sha256
2123 (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
2124 (build-system julia-build-system)
2125 (home-page "https://github.com/sciml/ifelse.jl")
2126 (synopsis "Function form of the if-else conditional statement")
2127 (description "This package provides a convenient function form of the
2128 conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
2129 (license license:expat)))
2130
2131 (define-public julia-imageaxes
2132 (package
2133 (name "julia-imageaxes")
2134 (version "0.6.9")
2135 (source
2136 (origin
2137 (method git-fetch)
2138 (uri (git-reference
2139 (url "https://github.com/JuliaImages/ImageAxes.jl")
2140 (commit (string-append "v" version))))
2141 (file-name (git-file-name name version))
2142 (sha256
2143 (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd"))))
2144 (build-system julia-build-system)
2145 (propagated-inputs
2146 `(("julia-axisarrays" ,julia-axisarrays)
2147 ("julia-imagecore" ,julia-imagecore)
2148 ("julia-reexport" ,julia-reexport)
2149 ("julia-simpletraits" ,julia-simpletraits)))
2150 (native-inputs
2151 `(("julia-unitful" ,julia-unitful)))
2152 (home-page "https://github.com/JuliaImages/ImageAxes.jl")
2153 (synopsis "Julia package for giving \"meaning\" to the axes of an image")
2154 (description "This small package supports the representation of images as
2155 @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with
2156 such arrays easy via traits.")
2157 (license license:expat)))
2158
2159 (define-public julia-imagebase
2160 (package
2161 (name "julia-imagebase")
2162 (version "0.1.1")
2163 (source
2164 (origin
2165 (method git-fetch)
2166 (uri (git-reference
2167 (url "https://github.com/JuliaImages/ImageBase.jl")
2168 (commit (string-append "v" version))))
2169 (file-name (git-file-name name version))
2170 (sha256
2171 (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
2172 (build-system julia-build-system)
2173 (arguments
2174 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2175 (propagated-inputs
2176 `(("julia-imagecore" ,julia-imagecore)
2177 ("julia-reexport" ,julia-reexport)))
2178 ;(native-inputs
2179 ; `(("julia-imagemagick" ,julia-imagemagick)
2180 ; ("julia-offsetarrays" ,julia-offsetarrays)
2181 ; ("julia-testimages" ,julia-testimages)))
2182 (home-page "https://github.com/JuliaImages/ImageBase.jl")
2183 (synopsis "Wrapper package around ImageCore")
2184 (description "This is a twin package to @code{ImageCore} with functions that
2185 are used among many of the packages in JuliaImages. The main purpose of this
2186 package is to reduce unnecessary compilation overhead from external
2187 dependencies.")
2188 (license license:expat)))
2189
2190 (define-public julia-imagecore
2191 (package
2192 (name "julia-imagecore")
2193 (version "0.9.1")
2194 (source
2195 (origin
2196 (method git-fetch)
2197 (uri (git-reference
2198 (url "https://github.com/JuliaImages/ImageCore.jl")
2199 (commit (string-append "v" version))))
2200 (file-name (git-file-name name version))
2201 (sha256
2202 (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq"))))
2203 (build-system julia-build-system)
2204 (arguments
2205 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2206 (propagated-inputs
2207 `(("julia-abstractffts" ,julia-abstractffts)
2208 ("julia-colors" ,julia-colors)
2209 ("julia-colorvectorspace" ,julia-colorvectorspace)
2210 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2211 ("julia-graphics" ,julia-graphics)
2212 ("julia-mappedarrays" ,julia-mappedarrays)
2213 ("julia-mosaicviews" ,julia-mosaicviews)
2214 ("julia-offsetarrays" ,julia-offsetarrays)
2215 ("julia-paddedviews" ,julia-paddedviews)
2216 ("julia-reexport" ,julia-reexport)))
2217 ;(native-inputs
2218 ; `(("julia-aqua" ,julia-aqua)
2219 ; ("julia-colorvectorspace" ,julia-colorvectorspace)
2220 ; ("julia-documenter" ,julia-documenter)
2221 ; ("julia-fftw" ,julia-fftw)
2222 ; ("julia-imageinterminal" ,julia-imageinterminal)
2223 ; ("julia-imagemagick" ,julia-imagemagick)
2224 ; ("julia-referencetests" ,julia-referencetests)
2225 ; ("julia-statistics" ,julia-statistics)))
2226 (home-page "https://github.com/JuliaImages/ImageCore.jl")
2227 (synopsis "Julia types for representing images")
2228 (description "@code{ImageCore} is the lowest-level component of the system
2229 of packages designed to support image processing and computer vision.")
2230 (license license:expat)))
2231
2232 (define-public julia-imageinterminal
2233 (package
2234 (name "julia-imageinterminal")
2235 (version "0.4.7")
2236 (source
2237 (origin
2238 (method git-fetch)
2239 (uri (git-reference
2240 (url "https://github.com/JuliaImages/ImageInTerminal.jl")
2241 (commit (string-append "v" version))))
2242 (file-name (git-file-name name version))
2243 (sha256
2244 (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
2245 (build-system julia-build-system)
2246 (arguments
2247 `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
2248 (propagated-inputs
2249 `(("julia-crayons" ,julia-crayons)
2250 ("julia-imagebase" ,julia-imagebase)
2251 ("julia-imagecore" ,julia-imagecore)
2252 ("julia-requires" ,julia-requires)))
2253 ;(native-inputs
2254 ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations)
2255 ; ("julia-imagemagick" ,julia-imagemagick)
2256 ; ("julia-imagetransformations" ,julia-imagetransformations)
2257 ; ("julia-offsetarrays" ,julia-offsetarrays)
2258 ; ("julia-referencetests" ,julia-referencetests)
2259 ; ("julia-rotations" ,julia-rotations)
2260 ; ("julia-sparsearrays" ,julia-sparsearrays)
2261 ; ("julia-testimages" ,julia-testimages)))
2262 (home-page "https://github.com/JuliaImages/ImageInTerminal.jl")
2263 (synopsis "Julia package for displaying images in the terminal")
2264 (description "@code{ImageInTerminal.jl} is a drop-in package that once
2265 imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays
2266 (i.e. Images) are displayed in the interactive REPL. The displayed images will
2267 be downscaled to fit into the size of your active terminal session.")
2268 (license license:expat)))
2269
2270 (define-public julia-imagemagick
2271 (package
2272 (name "julia-imagemagick")
2273 (version "1.2.1")
2274 (source
2275 (origin
2276 (method git-fetch)
2277 (uri (git-reference
2278 (url "https://github.com/JuliaIO/ImageMagick.jl")
2279 (commit (string-append "v" version))))
2280 (file-name (git-file-name name version))
2281 (sha256
2282 (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
2283 (build-system julia-build-system)
2284 (arguments
2285 `(#:phases
2286 (modify-phases %standard-phases
2287 (add-after 'link-depot 'skip-failing-test
2288 (lambda _
2289 ;; These tests try to download from the imagemagick.org
2290 (substitute* "test/runtests.jl"
2291 ((".*readremote\\.jl.*") ""))
2292 ;; Tests with the color gray are hard.
2293 (substitute* "test/constructed_images.jl"
2294 (("test (b == aa)" _ test) (string-append "test_nowarn " test))
2295 (("test (B == map)" _ test) (string-append "test_nowarn " test)))
2296 #t)))))
2297 (propagated-inputs
2298 `(("julia-fileio" ,julia-fileio)
2299 ("julia-imagecore" ,julia-imagecore)
2300 ("julia-imagemagick-jll" ,julia-imagemagick-jll)))
2301 (native-inputs
2302 `(("julia-colors" ,julia-colors)
2303 ("julia-colorvectorspace" ,julia-colorvectorspace)
2304 ("julia-imagemetadata" ,julia-imagemetadata)
2305 ("julia-imageshow" ,julia-imageshow)
2306 ("julia-imagetransformations" ,julia-imagetransformations)
2307 ("julia-indirectarrays" ,julia-indirectarrays)
2308 ("julia-offsetarrays" ,julia-offsetarrays)
2309 ("julia-zipfile" ,julia-zipfile)))
2310 (home-page "https://github.com/JuliaIO/ImageMagick.jl")
2311 (synopsis "Thin wrapper for ImageMagick")
2312 (description "This package provides a wrapper around ImageMagick version 6.
2313 It was split off from @code{Images.jl} to make image I/O more modular.")
2314 (license license:expat)))
2315
2316 (define-public julia-imagemetadata
2317 (package
2318 (name "julia-imagemetadata")
2319 (version "0.9.6")
2320 (source
2321 (origin
2322 (method git-fetch)
2323 (uri (git-reference
2324 (url "https://github.com/JuliaImages/ImageMetadata.jl")
2325 (commit (string-append "v" version))))
2326 (file-name (git-file-name name version))
2327 (sha256
2328 (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1"))))
2329 (build-system julia-build-system)
2330 (propagated-inputs
2331 `(("julia-axisarrays" ,julia-axisarrays)
2332 ("julia-imageaxes" ,julia-imageaxes)
2333 ("julia-imagecore" ,julia-imagecore)
2334 ("julia-indirectarrays" ,julia-indirectarrays)))
2335 (native-inputs
2336 `(("julia-offsetarrays" ,julia-offsetarrays)
2337 ("julia-simpletraits" ,julia-simpletraits)
2338 ("julia-unitful" ,julia-unitful)))
2339 (home-page "https://github.com/JuliaImages/ImageMetadata.jl")
2340 (synopsis "Julia package for images having metadata")
2341 (description "@code{ImageMetadata} is a simple package providing utilities
2342 for working with images that have metadata attached. For example, you might
2343 want to associate an image with the date on which the picture was taken, or an
2344 MRI scan with patient data, or an astronomical image with sky coordinates and
2345 information about the detector used to acquire the image.")
2346 (license license:expat)))
2347
2348 (define-public julia-imageshow
2349 (package
2350 (name "julia-imageshow")
2351 (version "0.3.2")
2352 (source
2353 (origin
2354 (method git-fetch)
2355 (uri (git-reference
2356 (url "https://github.com/JuliaImages/ImageShow.jl")
2357 (commit (string-append "v" version))))
2358 (file-name (git-file-name name version))
2359 (sha256
2360 (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
2361 (build-system julia-build-system)
2362 (arguments
2363 `(#:tests? #f)) ; cycle with ImageMagick.jl.
2364 (propagated-inputs
2365 `(("julia-fileio" ,julia-fileio)
2366 ("julia-imagebase" ,julia-imagebase)
2367 ("julia-imagecore" ,julia-imagecore)
2368 ("julia-offsetarrays" ,julia-offsetarrays)
2369 ("julia-stackviews" ,julia-stackviews)))
2370 ;(native-inputs
2371 ; `(("julia-imagedistances" ,julia-imagedistances)
2372 ; ("julia-imagemagick" ,julia-imagemagick)
2373 ; ("julia-suppressor" ,julia-suppressor)
2374 ; ("julia-testimages" ,julia-testimages)))
2375 (home-page "https://github.com/JuliaImages/ImageShow.jl")
2376 (synopsis
2377 "Inline graphical display of images in Julia graphical environments")
2378 (description "This package implements image @code{show} methods suitable
2379 for graphical platforms such as IJulia. It is intended to provide convenient
2380 inline presentation of greyscale or color images.")
2381 (license license:expat)))
2382
2383 (define-public julia-imagetransformations
2384 (package
2385 (name "julia-imagetransformations")
2386 (version "0.8.12")
2387 (source
2388 (origin
2389 (method git-fetch)
2390 (uri (git-reference
2391 (url "https://github.com/JuliaImages/ImageTransformations.jl")
2392 (commit (string-append "v" version))))
2393 (file-name (git-file-name name version))
2394 (sha256
2395 (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
2396 (build-system julia-build-system)
2397 (arguments
2398 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2399 (propagated-inputs
2400 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2401 ("julia-colorvectorspace" ,julia-colorvectorspace)
2402 ("julia-coordinatetransformations" ,julia-coordinatetransformations)
2403 ("julia-identityranges" ,julia-identityranges)
2404 ("julia-imagecore" ,julia-imagecore)
2405 ("julia-interpolations" ,julia-interpolations)
2406 ("julia-offsetarrays" ,julia-offsetarrays)
2407 ("julia-rotations" ,julia-rotations)
2408 ("julia-staticarrays" ,julia-staticarrays)))
2409 ;(native-inputs
2410 ; `(("julia-imagemagick" ,julia-imagemagick)
2411 ; ("julia-referencetests" ,julia-referencetests)
2412 ; ("julia-testimages" ,julia-testimages)))
2413 (home-page "https://github.com/JuliaImages/ImageTransformations.jl")
2414 (synopsis "Geometric transformations on images for Julia")
2415 (description "This package provides support for image resizing, image
2416 rotation, and other spatial transformations of arrays.")
2417 (license license:expat)))
2418
2419 (define-public julia-indexing
2420 (package
2421 (name "julia-indexing")
2422 (version "1.1.1")
2423 (source
2424 (origin
2425 (method git-fetch)
2426 (uri (git-reference
2427 (url "https://github.com/andyferris/Indexing.jl")
2428 (commit (string-append "v" version))))
2429 (file-name (git-file-name name version))
2430 (sha256
2431 (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx"))))
2432 (build-system julia-build-system)
2433 (home-page "https://github.com/andyferris/Indexing.jl")
2434 (synopsis "Generalized indexing for Julia")
2435 (description "This package defines functions for getting multiple indices
2436 out of dictionaries, tuples, etc, extending this ability beyond
2437 @code{AbstractArray}.")
2438 (license license:expat)))
2439
2440 (define-public julia-indirectarrays
2441 (package
2442 (name "julia-indirectarrays")
2443 (version "0.5.1")
2444 (source
2445 (origin
2446 (method git-fetch)
2447 (uri (git-reference
2448 (url "https://github.com/JuliaArrays/IndirectArrays.jl")
2449 (commit (string-append "v" version))))
2450 (file-name (git-file-name name version))
2451 (sha256
2452 (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s"))))
2453 (build-system julia-build-system)
2454 (native-inputs
2455 `(("julia-colors" ,julia-colors)
2456 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2457 ("julia-mappedarrays" ,julia-mappedarrays)))
2458 (home-page "https://github.com/JuliaArrays/IndirectArrays.jl")
2459 (synopsis "Julia implementation of indexed arrays")
2460 (description "An @code{IndirectArray} is one that encodes data using a
2461 combination of an @code{index} and a @code{value} table. Each element is
2462 assigned its own index, which is used to retrieve the value from the
2463 @code{value} table. Among other uses, @code{IndirectArrays} can represent
2464 indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
2465 (license license:expat)))
2466
2467 (define-public julia-infinity
2468 (package
2469 (name "julia-infinity")
2470 (version "0.2.4")
2471 (source
2472 (origin
2473 (method git-fetch)
2474 (uri (git-reference
2475 (url "https://github.com/cjdoris/Infinity.jl")
2476 (commit (string-append "v" version))))
2477 (file-name (git-file-name name version))
2478 (sha256
2479 (base32 "1941lwvrdjnrynigzixxin3chpg1ba6xplvcwc89x0f6z658hwmm"))))
2480 (build-system julia-build-system)
2481 (arguments
2482 `(#:phases
2483 (modify-phases %standard-phases
2484 (add-after 'link-depot 'remove-timezones.jl
2485 (lambda _
2486 (substitute* "test/runtests.jl"
2487 (("using TimeZones.*") "")
2488 ((".*infextendedtime.*") ""))
2489 #t)))))
2490 (propagated-inputs
2491 `(("julia-requires" ,julia-requires)))
2492 (native-inputs
2493 `(("julia-compat" ,julia-compat)))
2494 (home-page "https://docs.juliahub.com/Infinity/")
2495 (synopsis "Representation of infinity in Julia")
2496 (description "This package provides representations for infinity and
2497 negative infinity in Julia.")
2498 (license license:expat)))
2499
2500 (define-public julia-inifile
2501 (package
2502 (name "julia-inifile")
2503 (version "0.5.0")
2504 (source
2505 (origin
2506 (method git-fetch)
2507 (uri (git-reference
2508 (url "https://github.com/JuliaIO/IniFile.jl")
2509 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
2510 (file-name (git-file-name name version))
2511 (sha256
2512 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
2513 (build-system julia-build-system)
2514 (home-page "https://github.com/JuliaIO/IniFile.jl")
2515 (synopsis "Reading Windows-style INI files")
2516 (description "This is a Julia package that defines an IniFile type that
2517 interfaces with @file{.ini} files.")
2518 (license license:expat)))
2519
2520 (define-public julia-interpolations
2521 (package
2522 (name "julia-interpolations")
2523 (version "0.13.3")
2524 (source
2525 (origin
2526 (method git-fetch)
2527 (uri (git-reference
2528 (url "https://github.com/JuliaMath/Interpolations.jl")
2529 (commit (string-append "v" version))))
2530 (file-name (git-file-name name version))
2531 (sha256
2532 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
2533 (build-system julia-build-system)
2534 (arguments
2535 `(#:parallel-tests? #f))
2536 (propagated-inputs
2537 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2538 ("julia-offsetarrays" ,julia-offsetarrays)
2539 ("julia-ratios" ,julia-ratios)
2540 ("julia-requires" ,julia-requires)
2541 ("julia-staticarrays" ,julia-staticarrays)
2542 ("julia-woodburymatrices" ,julia-woodburymatrices)))
2543 (native-inputs
2544 `(("julia-dualnumbers" ,julia-dualnumbers)
2545 ("julia-forwarddiff" ,julia-forwarddiff)
2546 ("julia-offsetarrays" ,julia-offsetarrays)
2547 ("julia-unitful" ,julia-unitful)
2548 ("julia-zygote" ,julia-zygote)))
2549 (home-page "https://github.com/JuliaMath/Interpolations.jl")
2550 (synopsis "Continuous interpolation of discrete datasets")
2551 (description "This package implements a variety of interpolation schemes for
2552 the Julia language. It has the goals of ease-of-use, broad algorithmic support,
2553 and exceptional performance.")
2554 (license license:expat)))
2555
2556 (define-public julia-intervalsets
2557 (package
2558 (name "julia-intervalsets")
2559 (version "0.5.3")
2560 (source
2561 (origin
2562 (method git-fetch)
2563 (uri (git-reference
2564 (url "https://github.com/JuliaMath/IntervalSets.jl")
2565 (commit (string-append "v" version))))
2566 (file-name (git-file-name name version))
2567 (sha256
2568 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
2569 (build-system julia-build-system)
2570 (propagated-inputs
2571 `(("julia-ellipsisnotation" ,julia-ellipsisnotation)))
2572 (native-inputs
2573 `(("julia-offsetarrays" ,julia-offsetarrays)))
2574 (home-page "https://github.com/JuliaMath/IntervalSets.jl")
2575 (synopsis "Interval Sets for Julia")
2576 (description "This package is intended to implement a \"minimal\" foundation
2577 for intervals upon which other packages might build. In particular, we
2578 encourage type-piracy for the reason that only one interval package can
2579 unambiguously define the @code{..} and @code{±} operators.")
2580 (license license:expat)))
2581
2582 (define-public julia-invertedindices
2583 (package
2584 (name "julia-invertedindices")
2585 (version "1.0.0")
2586 (source
2587 (origin
2588 (method git-fetch)
2589 (uri (git-reference
2590 (url "https://github.com/mbauman/InvertedIndices.jl")
2591 (commit (string-append "v" version))))
2592 (file-name (git-file-name name version))
2593 (sha256
2594 (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46"))))
2595 (build-system julia-build-system)
2596 (native-inputs
2597 `(("julia-offsetarrays" ,julia-offsetarrays)))
2598 (home-page "https://github.com/mbauman/InvertedIndices.jl")
2599 (synopsis "Index type that allows for inverted selections")
2600 (description "This package just exports one type: the @code{InvertedIndex},
2601 or @code{Not} for short. It can wrap any supported index type and may be used
2602 as an index into any @code{AbstractArray} subtype, including OffsetArrays.")
2603 (license license:expat)))
2604
2605 (define-public julia-iocapture
2606 (package
2607 (name "julia-iocapture")
2608 (version "0.2.2")
2609 (source
2610 (origin
2611 (method git-fetch)
2612 (uri (git-reference
2613 (url "https://github.com/JuliaDocs/IOCapture.jl")
2614 (commit (string-append "v" version))))
2615 (file-name (git-file-name name version))
2616 (sha256
2617 (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb"))))
2618 (build-system julia-build-system)
2619 (home-page "https://github.com/JuliaDocs/IOCapture.jl")
2620 (synopsis "Capture standard output and error streams")
2621 (description "This package provides the @code{IOCapture.capture(f)}
2622 function, which captures the standard output and standard error, and returns it
2623 as a string together with the return value.")
2624 (license license:expat)))
2625
2626 (define-public julia-irtools
2627 (package
2628 (name "julia-irtools")
2629 (version "0.4.3")
2630 (source
2631 (origin
2632 (method git-fetch)
2633 (uri (git-reference
2634 (url "https://github.com/FluxML/IRTools.jl")
2635 (commit (string-append "v" version))))
2636 (file-name (git-file-name name version))
2637 (sha256
2638 (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql"))))
2639 (build-system julia-build-system)
2640 (propagated-inputs
2641 `(("julia-macrotools" ,julia-macrotools)))
2642 (native-inputs
2643 `(("julia-documenter" ,julia-documenter)))
2644 (home-page "https://github.com/FluxML/IRTools.jl")
2645 (synopsis "Simple and flexible IR format")
2646 (description "This package provides a simple and flexible IR format,
2647 expressive enough to work with both lowered and typed Julia code, as well as
2648 external IRs. It can be used with Julia metaprogramming tools such as
2649 Cassette.")
2650 (license license:expat)))
2651
2652 (define-public julia-iteratorinterfaceextensions
2653 (package
2654 (name "julia-iteratorinterfaceextensions")
2655 (version "1.0.0")
2656 (source
2657 (origin
2658 (method git-fetch)
2659 (uri (git-reference
2660 (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2661 (commit (string-append "v" version))))
2662 (file-name (git-file-name name version))
2663 (sha256
2664 (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"))))
2665 (build-system julia-build-system)
2666 (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2667 (synopsis "Traits for Julia iterators")
2668 (description "IteratorInterfaceExtensions defines a small number of
2669 extensions to the iterator interface.")
2670 (license license:expat)))
2671
2672 (define-public julia-itertools
2673 (package
2674 (name "julia-itertools")
2675 (version "1.3.0")
2676 (source
2677 (origin
2678 (method git-fetch)
2679 (uri (git-reference
2680 (url "https://github.com/JuliaCollections/IterTools.jl")
2681 (commit (string-append "v" version))))
2682 (file-name (git-file-name name version))
2683 (sha256
2684 (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq"))))
2685 (build-system julia-build-system)
2686 (home-page "https://github.com/JuliaCollections/IterTools.jl")
2687 (synopsis "Common functional iterator patterns")
2688 (description
2689 "Common functional iterator patterns (formerly @code{Iterators.jl}).")
2690 (license license:expat)))
2691
2692 (define-public julia-json
2693 (package
2694 (name "julia-json")
2695 (version "0.21.1")
2696 (source
2697 (origin
2698 (method git-fetch)
2699 (uri (git-reference
2700 (url "https://github.com/JuliaIO/JSON.jl")
2701 (commit (string-append "v" version))))
2702 (file-name (git-file-name name version))
2703 (sha256
2704 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
2705 (build-system julia-build-system)
2706 (propagated-inputs
2707 `(("julia-datastructures" ,julia-datastructures)
2708 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2709 ("julia-parsers" ,julia-parsers)
2710 ("julia-offsetarrays" ,julia-offsetarrays)))
2711 (home-page "https://github.com/JuliaIO/JSON.jl")
2712 (synopsis "JSON parsing and printing library for Julia")
2713 (description "@code{JSON.jl} is a pure Julia module which supports parsing
2714 and printing JSON documents.")
2715 (license license:expat)))
2716
2717 (define-public julia-json3
2718 (package
2719 (name "julia-json3")
2720 (version "1.9.0")
2721 (source
2722 (origin
2723 (method git-fetch)
2724 (uri (git-reference
2725 (url "https://github.com/quinnj/JSON3.jl")
2726 (commit (string-append "v" version))))
2727 (file-name (git-file-name name version))
2728 (sha256
2729 (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17"))))
2730 (build-system julia-build-system)
2731 (propagated-inputs
2732 `(("julia-parsers" ,julia-parsers)
2733 ("julia-structtypes" ,julia-structtypes)))
2734 (home-page "https://github.com/quinnj/JSON3.jl")
2735 (synopsis "JSON package for Julia")
2736 (description "This package provides another JSON package for Julia, with a
2737 focus on speed and slick struct mapping.")
2738 (license license:expat)))
2739
2740 (define-public julia-latexstrings
2741 (package
2742 (name "julia-latexstrings")
2743 (version "1.2.1")
2744 (source
2745 (origin
2746 (method git-fetch)
2747 (uri (git-reference
2748 (url "https://github.com/stevengj/LaTeXStrings.jl")
2749 (commit (string-append "v" version))))
2750 (file-name (git-file-name name version))
2751 (sha256
2752 (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp"))))
2753 (build-system julia-build-system)
2754 (native-inputs
2755 `(("julia-documenter" ,julia-documenter)))
2756 (home-page "https://github.com/stevengj/LaTeXStrings.jl")
2757 (synopsis "Input and display of LaTeX equation strings")
2758 (description "This is a small package to make it easier to type LaTeX
2759 equations in string literals in the Julia language.")
2760 (license license:expat)))
2761
2762 (define-public julia-lazyarrays
2763 (package
2764 (name "julia-lazyarrays")
2765 (version "0.22.2")
2766 (source
2767 (origin
2768 (method git-fetch)
2769 (uri (git-reference
2770 (url "https://github.com/JuliaArrays/LazyArrays.jl")
2771 (commit (string-append "v" version))))
2772 (file-name (git-file-name name version))
2773 (sha256
2774 (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5"))))
2775 (build-system julia-build-system)
2776 (propagated-inputs
2777 `(("julia-arraylayouts" ,julia-arraylayouts)
2778 ("julia-fillarrays" ,julia-fillarrays)
2779 ("julia-macrotools" ,julia-macrotools)
2780 ("julia-matrixfactorizations" ,julia-matrixfactorizations)
2781 ("julia-staticarrays" ,julia-staticarrays)))
2782 (native-inputs
2783 `(("julia-tracker" ,julia-tracker)))
2784 (home-page "https://github.com/JuliaArrays/LazyArrays.jl")
2785 (synopsis "Lazy arrays and linear algebra")
2786 (description "This package supports lazy analogues of array operations like
2787 @code{vcat}, @code{hcat}, and multiplication. This helps with the
2788 implementation of matrix-free methods for iterative solvers.")
2789 (license license:expat)))
2790
2791 (define-public julia-logexpfunctions
2792 (package
2793 (name "julia-logexpfunctions")
2794 (version "0.2.4")
2795 (source
2796 (origin
2797 (method git-fetch)
2798 (uri (git-reference
2799 (url "https://github.com/JuliaStats/LogExpFunctions.jl")
2800 (commit (string-append "v" version))))
2801 (file-name (git-file-name name version))
2802 (sha256
2803 (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n"))))
2804 (build-system julia-build-system)
2805 (propagated-inputs
2806 `(("julia-docstringextensions" ,julia-docstringextensions)))
2807 (native-inputs
2808 `(("julia-offsetarrays" ,julia-offsetarrays)))
2809 (home-page "https://github.com/JuliaStats/LogExpFunctions.jl")
2810 (synopsis "Special functions based on @code{log} and @code{exp}")
2811 (description "Various special functions based on log and exp moved from
2812 @code{StatsFuns.jl} into a separate package, to minimize dependencies. These
2813 functions only use native Julia code, so there is no need to depend on
2814 @code{librmath} or similar libraries.")
2815 (license license:expat)))
2816
2817 (define-public julia-macrotools
2818 (package
2819 (name "julia-macrotools")
2820 (version "0.5.6")
2821 (source
2822 (origin
2823 (method git-fetch)
2824 (uri (git-reference
2825 (url "https://github.com/FluxML/MacroTools.jl")
2826 (commit (string-append "v" version))))
2827 (file-name (git-file-name name version))
2828 (sha256
2829 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
2830 (build-system julia-build-system)
2831 (home-page "https://fluxml.ai/MacroTools.jl")
2832 (synopsis "Tools for working with Julia code and expressions")
2833 (description "This library provides tools for working with Julia code and
2834 expressions. This includes a template-matching system and code-walking tools
2835 that let you do deep transformations of code.")
2836 (license license:expat)))
2837
2838 (define-public julia-mappedarrays
2839 (package
2840 (name "julia-mappedarrays")
2841 (version "0.4.0")
2842 (source
2843 (origin
2844 (method git-fetch)
2845 (uri (git-reference
2846 (url "https://github.com/JuliaArrays/MappedArrays.jl")
2847 (commit (string-append "v" version))))
2848 (file-name (git-file-name name version))
2849 (sha256
2850 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
2851 (build-system julia-build-system)
2852 (propagated-inputs
2853 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
2854 (native-inputs
2855 `(("julia-colortypes" ,julia-colortypes)
2856 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2857 ("julia-offsetarrays" ,julia-offsetarrays)))
2858 (home-page "https://github.com/JuliaArrays/MappedArrays.jl")
2859 (synopsis "Lazy in-place transformations of arrays")
2860 (description "This package implements \"lazy\" in-place elementwise
2861 transformations of arrays for the Julia programming language. Explicitly, it
2862 provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a
2863 specified (but arbitrary) function f, without ever having to compute M
2864 explicitly (in the sense of allocating storage for M). The name of the package
2865 comes from the fact that @code{M == map(f, A)}.")
2866 (license license:expat)))
2867
2868 (define-public julia-matrixfactorizations
2869 (package
2870 (name "julia-matrixfactorizations")
2871 (version "0.8.4")
2872 (source
2873 (origin
2874 (method git-fetch)
2875 (uri (git-reference
2876 (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2877 (commit (string-append "v" version))))
2878 (file-name (git-file-name name version))
2879 (sha256
2880 (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb"))))
2881 (build-system julia-build-system)
2882 (arguments
2883 `(#:phases
2884 (modify-phases %standard-phases
2885 (add-after 'link-depot 'skip-failing-test
2886 (lambda _
2887 ;; Tests with math functions are hard.
2888 (substitute* "test/test_ul.jl"
2889 (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
2890 ;; Also skip the REPL test.
2891 (("test String") "test_nowarn String"))
2892 #t)))))
2893 (propagated-inputs
2894 `(("julia-arraylayouts" ,julia-arraylayouts)))
2895 (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2896 (synopsis "Julia package to contain non-standard matrix factorizations")
2897 (description "A Julia package to contain non-standard matrix factorizations.
2898 At the moment it implements the QL, RQ, and UL factorizations, a combined
2899 Cholesky factorization with inverse, and polar decompositions. In the future it
2900 may include other factorizations such as the LQ factorization.")
2901 (license license:expat)))
2902
2903 (define-public julia-mbedtls
2904 (package
2905 (name "julia-mbedtls")
2906 (version "1.0.3")
2907 (source
2908 (origin
2909 (method git-fetch)
2910 (uri (git-reference
2911 (url "https://github.com/JuliaLang/MbedTLS.jl")
2912 (commit (string-append "v" version))))
2913 (file-name (git-file-name name version))
2914 (sha256
2915 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
2916 (build-system julia-build-system)
2917 (arguments
2918 `(#:phases
2919 (modify-phases %standard-phases
2920 (add-before 'install 'disable-network-tests
2921 ;; Tries to connect to httpbin.org
2922 (lambda _
2923 (substitute* "test/runtests.jl"
2924 (("testhost =") "return #"))
2925 #t)))))
2926 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
2927 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
2928 (synopsis "Apache's mbed TLS library wrapper")
2929 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
2930 TLS} and cryptography C library for Julia.")
2931 (license license:expat)))
2932
2933 (define-public julia-measurements
2934 (package
2935 (name "julia-measurements")
2936 (version "2.6.0")
2937 (source
2938 (origin
2939 (method git-fetch)
2940 (uri (git-reference
2941 (url "https://github.com/JuliaPhysics/Measurements.jl")
2942 (commit (string-append "v" version))))
2943 (file-name (git-file-name name version))
2944 (sha256
2945 (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
2946 (build-system julia-build-system)
2947 (propagated-inputs
2948 `(("julia-calculus" ,julia-calculus)
2949 ("julia-recipesbase" ,julia-recipesbase)
2950 ("julia-requires" ,julia-requires)))
2951 (native-inputs
2952 `(("julia-quadgk" ,julia-quadgk)
2953 ("julia-specialfunctions" ,julia-specialfunctions)
2954 ("julia-unitful" ,julia-unitful)))
2955 (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
2956 (synopsis "Error propagation calculator and library")
2957 (description "@code{Measurements.jl} is an error propagation calculator and
2958 library for physical measurements. It supports real and complex numbers with
2959 uncertainty, arbitrary precision calculations, operations with arrays, and
2960 numerical integration. The linear error propagation theory is employed to
2961 propagate the errors.")
2962 (license license:expat)))
2963
2964 (define-public julia-measures
2965 (package
2966 (name "julia-measures")
2967 (version "0.3.1")
2968 (source
2969 (origin
2970 (method git-fetch)
2971 (uri (git-reference
2972 (url "https://github.com/JuliaGraphics/Measures.jl")
2973 (commit (string-append "v" version))))
2974 (file-name (git-file-name name version))
2975 (sha256
2976 (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l"))))
2977 (build-system julia-build-system)
2978 (home-page "https://github.com/JuliaGraphics/Measures.jl")
2979 (synopsis "Unified measure and coordinates types")
2980 (description "This library generalizes and unifies the notion of measures
2981 used in Compose, Compose3D, and Escher. It allows building up and representing
2982 expressions involving differing types of units that are then evaluated,
2983 resolving them into absolute units.")
2984 (license license:expat)))
2985
2986 (define-public julia-media
2987 (package
2988 (name "julia-media")
2989 (version "0.5.0")
2990 (source
2991 (origin
2992 (method git-fetch)
2993 (uri (git-reference
2994 (url "https://github.com/JunoLab/Media.jl")
2995 (commit (string-append "v" version))))
2996 (file-name (git-file-name name version))
2997 (sha256
2998 (base32 "05jq9j3vs8yfj2lwz3sh1vk5rha06xdcikp9s2q3dn316vryy6di"))))
2999 (build-system julia-build-system)
3000 ;; Package without Project.toml
3001 (arguments
3002 '(#:julia-package-name "Media"
3003 #:julia-package-uuid "e89f7d12-3494-54d1-8411-f7d8b9ae1f27"))
3004 (propagated-inputs
3005 `(("julia-macrotools" ,julia-macrotools)))
3006 (home-page "https://github.com/JunoLab/Media.jl")
3007 (synopsis "Unified measure and coordinates types")
3008 (description "This package provides a display system which enables the
3009 user handle multiple input/output devices and decide what media types get
3010 displayed where.")
3011 (license license:expat)))
3012
3013 (define-public julia-missings
3014 (package
3015 (name "julia-missings")
3016 (version "1.0.2")
3017 (source
3018 (origin
3019 (method git-fetch)
3020 (uri (git-reference
3021 (url "https://github.com/JuliaData/Missings.jl")
3022 (commit (string-append "v" version))))
3023 (file-name (git-file-name name version))
3024 (sha256
3025 (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5"))))
3026 (build-system julia-build-system)
3027 (propagated-inputs
3028 `(("julia-dataapi" ,julia-dataapi)))
3029 (home-page "https://github.com/JuliaData/Missings.jl")
3030 (synopsis "Additional missing value support for Julia")
3031 (description "This package provides additional functionality for working
3032 with @code{missing} values in Julia.")
3033 (license license:expat)))
3034
3035 (define-public julia-mlstyle
3036 (package
3037 (name "julia-mlstyle")
3038 (version "0.4.10")
3039 (source
3040 (origin
3041 (method git-fetch)
3042 (uri (git-reference
3043 (url "https://github.com/thautwarm/MLStyle.jl")
3044 (commit (string-append "v" version))))
3045 (file-name (git-file-name name version))
3046 (sha256
3047 (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
3048 (build-system julia-build-system)
3049 (native-inputs
3050 `(("julia-datastructures" ,julia-datastructures)))
3051 (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
3052 (synopsis "Julia functional programming infrastructures")
3053 (description "This package provides consistent and extensible functional
3054 programming infrastructures, and metaprogramming facilities.")
3055 (license license:expat)))
3056
3057 (define-public julia-mocking
3058 (package
3059 (name "julia-mocking")
3060 (version "0.7.3")
3061 (source
3062 (origin
3063 (method git-fetch)
3064 (uri (git-reference
3065 (url "https://github.com/invenia/Mocking.jl")
3066 (commit (string-append "v" version))))
3067 (file-name (git-file-name name version))
3068 (sha256
3069 (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg"))))
3070 (build-system julia-build-system)
3071 (propagated-inputs
3072 `(("julia-compat" ,julia-compat)
3073 ("julia-exprtools" ,julia-exprtools)))
3074 (home-page "https://github.com/invenia/Mocking.jl")
3075 (synopsis "Overload Julia function calls")
3076 (description "The purpose of this package is to allow Julia function calls
3077 to be temporarily overloaded for the purpose of testing.")
3078 (license license:expat)))
3079
3080 (define-public julia-mosaicviews
3081 (package
3082 (name "julia-mosaicviews")
3083 (version "0.3.3")
3084 (source
3085 (origin
3086 (method git-fetch)
3087 (uri (git-reference
3088 (url "https://github.com/JuliaArrays/MosaicViews.jl")
3089 (commit (string-append "v" version))))
3090 (file-name (git-file-name name version))
3091 (sha256
3092 (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
3093 (build-system julia-build-system)
3094 (arguments
3095 `(#:tests? #f)) ; Cycle with ImageCore.jl
3096 (propagated-inputs
3097 `(("julia-mappedarrays" ,julia-mappedarrays)
3098 ("julia-paddedviews" ,julia-paddedviews)
3099 ("julia-stackviews" ,julia-stackviews)))
3100 ;(native-inputs
3101 ; `(("julia-colorvectorspace" ,julia-colorvectorspace)
3102 ; ("julia-imagecore" ,julia-imagecore)))
3103 (home-page "https://github.com/JuliaArrays/MosaicViews.jl")
3104 (synopsis
3105 "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices")
3106 (description "When visualizing images, it is not uncommon to provide a 2D
3107 view of different image sources. For example, comparing multiple images of
3108 different sizes, getting a preview of machine learning dataset. This package
3109 aims to provide easy-to-use tools for such tasks.")
3110 (license license:expat)))
3111
3112 (define-public julia-msgpack
3113 (package
3114 (name "julia-msgpack")
3115 (version "1.1.0")
3116 (source
3117 (origin
3118 (method git-fetch)
3119 (uri (git-reference
3120 (url "https://github.com/JuliaIO/MsgPack.jl")
3121 (commit (string-append "v" version))))
3122 (file-name (git-file-name name version))
3123 (sha256
3124 (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
3125 (build-system julia-build-system)
3126 (home-page "https://github.com/JuliaIO/MsgPack.jl")
3127 (synopsis "Julia MsgPack implementation")
3128 (description "@code{MsgPack.jl} is a MessagePack implementation in pure
3129 Julia, with type-driven, overloadable packing/unpacking functionality.")
3130 (license license:expat)))
3131
3132 (define-public julia-mutablearithmetics
3133 (package
3134 (name "julia-mutablearithmetics")
3135 (version "0.2.20")
3136 (source
3137 (origin
3138 (method git-fetch)
3139 (uri (git-reference
3140 (url "https://github.com/jump-dev/MutableArithmetics.jl")
3141 (commit (string-append "v" version))))
3142 (file-name (git-file-name name version))
3143 (sha256
3144 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f"))))
3145 (build-system julia-build-system)
3146 (propagated-inputs
3147 `(("julia-offsetarrays" ,julia-offsetarrays)))
3148 (home-page "https://github.com/jump-dev/MutableArithmetics.jl")
3149 (synopsis "Interface for arithmetics on mutable types in Julia")
3150 (description "MutableArithmetics is a Julia package which allows:
3151 @itemize
3152 @item mutable types to implement mutable arithmetics
3153 @item algorithms that could exploit mutable arithmetics to exploit them while
3154 still being completely generic
3155 @end itemize")
3156 (license license:mpl2.0)))
3157
3158 (define-public julia-nanmath
3159 (package
3160 (name "julia-nanmath")
3161 (version "0.3.5")
3162 (source
3163 (origin
3164 (method git-fetch)
3165 (uri (git-reference
3166 (url "https://github.com/mlubin/NaNMath.jl")
3167 (commit (string-append "v" version))))
3168 (file-name (git-file-name name version))
3169 (sha256
3170 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
3171 (build-system julia-build-system)
3172 (home-page "https://github.com/mlubin/NaNMath.jl")
3173 (synopsis "Implementations of basic math functions")
3174 (description "Implementations of basic math functions which return
3175 @code{NaN} instead of throwing a @code{DomainError}.")
3176 (license license:expat)))
3177
3178 (define-public julia-nlsolversbase
3179 (package
3180 (name "julia-nlsolversbase")
3181 (version "7.8.0")
3182 (source
3183 (origin
3184 (method git-fetch)
3185 (uri (git-reference
3186 (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
3187 (commit (string-append "v" version))))
3188 (file-name (git-file-name name version))
3189 (sha256
3190 (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98"))))
3191 (build-system julia-build-system)
3192 (propagated-inputs
3193 `(("julia-diffresults" ,julia-diffresults)
3194 ("julia-finitediff" ,julia-finitediff)
3195 ("julia-forwarddiff" ,julia-forwarddiff)))
3196 (native-inputs
3197 `(("julia-optimtestproblems" ,julia-optimtestproblems)
3198 ("julia-recursivearraytools" ,julia-recursivearraytools)))
3199 (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
3200 (synopsis "Optimization and equation solver software in JuliaNLSolvers")
3201 (description "This package aims at establishing common ground for Optim.jl,
3202 LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to
3203 hold objective related callables, information about the objectives, and an
3204 interface to interact with these types.")
3205 (license license:expat)))
3206
3207 (define-public julia-nnlib
3208 (package
3209 (name "julia-nnlib")
3210 (version "0.7.29")
3211 (source
3212 (origin
3213 (method git-fetch)
3214 (uri (git-reference
3215 (url "https://github.com/FluxML/NNlib.jl")
3216 (commit (string-append "v" version))))
3217 (file-name (git-file-name name version))
3218 (sha256
3219 (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
3220 (build-system julia-build-system)
3221 (arguments
3222 `(#:phases
3223 (modify-phases %standard-phases
3224 (add-after 'link-depot 'skip-cuda-tests
3225 (lambda _
3226 (substitute* "test/runtests.jl"
3227 (("using CUDA") "")
3228 (("&& CUDA\\.functional\\(\\)") ""))
3229 (setenv "NNLIB_TEST_CUDA" "false"))))))
3230 (propagated-inputs
3231 `(("julia-adapt" ,julia-adapt)
3232 ("julia-chainrulescore" ,julia-chainrulescore)
3233 ("julia-requires" ,julia-requires)))
3234 (native-inputs
3235 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
3236 ("julia-stablerngs" ,julia-stablerngs)
3237 ("julia-zygote" ,julia-zygote)))
3238 (home-page "https://github.com/FluxML/NNlib.jl")
3239 (synopsis "Neural Network primitives with multiple backends")
3240 (description "This package will provide a library of functions useful for
3241 machine learning, such as softmax, sigmoid, convolutions and pooling. It
3242 doesn't provide any other \"high-level\" functionality like layers or AD.")
3243 (license license:expat)))
3244
3245 (define-public julia-optimtestproblems
3246 (package
3247 (name "julia-optimtestproblems")
3248 (version "2.0.2")
3249 (source
3250 (origin
3251 (method git-fetch)
3252 (uri (git-reference
3253 (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
3254 (commit (string-append "v" version))))
3255 (file-name (git-file-name name version))
3256 (sha256
3257 (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
3258 (build-system julia-build-system)
3259 (arguments
3260 `(#:julia-package-name "OptimTestProblems"
3261 #:julia-package-uuid "cec144fc-5a64-5bc6-99fb-dde8f63e154c"))
3262 (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
3263 (synopsis "Collection of optimization test problems")
3264 (description "The purpose of this package is to provide test problems for
3265 JuliaNLSolvers packages.")
3266 (license license:expat)))
3267
3268 (define-public julia-orderedcollections
3269 (package
3270 (name "julia-orderedcollections")
3271 (version "1.4.1")
3272 (source
3273 (origin
3274 (method git-fetch)
3275 (uri (git-reference
3276 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
3277 (commit (string-append "v" version))))
3278 (file-name (git-file-name name version))
3279 (sha256
3280 (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
3281 (build-system julia-build-system)
3282 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
3283 (synopsis "Associative containers that preserve insertion order")
3284 (description "This package implements @code{OrderedDicts} and
3285 @code{OrderedSets}, which are similar to containers in base Julia. However,
3286 during iteration the @code{Ordered*} containers return items in the order in
3287 which they were added to the collection.")
3288 (license license:expat)))
3289
3290 (define-public julia-offsetarrays
3291 (package
3292 (name "julia-offsetarrays")
3293 (version "1.10.3")
3294 (source
3295 (origin
3296 (method git-fetch)
3297 (uri (git-reference
3298 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
3299 (commit (string-append "v" version))))
3300 (file-name (git-file-name name version))
3301 (sha256
3302 (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc"))))
3303 (build-system julia-build-system)
3304 (propagated-inputs
3305 `(("julia-adapt" ,julia-adapt)))
3306 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
3307 (arguments '(#:tests? #f))
3308 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
3309 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
3310 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
3311 have arbitrary indices, similar to those found in some other programming
3312 languages like Fortran.")
3313 (license license:expat)))
3314
3315 (define-public julia-paddedviews
3316 (package
3317 (name "julia-paddedviews")
3318 (version "0.5.8")
3319 (source
3320 (origin
3321 (method git-fetch)
3322 (uri (git-reference
3323 (url "https://github.com/JuliaArrays/PaddedViews.jl")
3324 (commit (string-append "v" version))))
3325 (file-name (git-file-name name version))
3326 (sha256
3327 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h"))))
3328 (build-system julia-build-system)
3329 (propagated-inputs
3330 `(("julia-offsetarrays" ,julia-offsetarrays)))
3331 (native-inputs
3332 `(("julia-documenter" ,julia-documenter)))
3333 (home-page "https://github.com/JuliaArrays/PaddedViews.jl")
3334 (synopsis "Add virtual padding to the edges of an array")
3335 (description "@code{PaddedViews} provides a simple wrapper type,
3336 @code{PaddedView}, to add \"virtual\" padding to any array without copying data.
3337 Edge values not specified by the array are assigned a @code{fillvalue}.
3338 Multiple arrays may be \"promoted\" to have common indices using the
3339 @code{paddedviews} function.")
3340 (license license:expat)))
3341
3342 (define-public julia-parameters
3343 (package
3344 (name "julia-parameters")
3345 (version "0.12.2")
3346 (source
3347 (origin
3348 (method git-fetch)
3349 (uri (git-reference
3350 (url "https://github.com/mauro3/Parameters.jl")
3351 (commit (string-append "v" version))))
3352 (file-name (git-file-name name version))
3353 (sha256
3354 (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
3355 (build-system julia-build-system)
3356 (propagated-inputs
3357 `(("julia-orderedcollections" ,julia-orderedcollections)
3358 ("julia-unpack" ,julia-unpack)))
3359 (home-page "https://github.com/mauro3/Parameters.jl")
3360 (synopsis "Numerical-model parameter helpers")
3361 (description "This package contains types with default field values, keyword
3362 constructors and (un-)pack macros. Keyword functions can be slow in Julia,
3363 however, the normal positional constructor is also provided and could be used in
3364 performance critical code.")
3365 (license license:expat)))
3366
3367 (define-public julia-parsers
3368 (package
3369 (name "julia-parsers")
3370 (version "1.1.0")
3371 (source
3372 (origin
3373 (method git-fetch)
3374 (uri (git-reference
3375 (url "https://github.com/JuliaData/Parsers.jl")
3376 (commit (string-append "v" version))))
3377 (file-name (git-file-name name version))
3378 (sha256
3379 (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
3380 (build-system julia-build-system)
3381 (home-page "https://github.com/JuliaData/Parsers.jl")
3382 (synopsis "Fast parsing machinery for basic types in Julia")
3383 (description "@code{Parsers.jl} is a collection of type parsers and
3384 utilities for Julia.")
3385 (license license:expat)))
3386
3387 (define-public julia-pdmats
3388 (package
3389 (name "julia-pdmats")
3390 (version "0.11.1")
3391 (source
3392 (origin
3393 (method git-fetch)
3394 (uri (git-reference
3395 (url "https://github.com/JuliaStats/PDMats.jl")
3396 (commit (string-append "v" version))))
3397 (file-name (git-file-name name version))
3398 (sha256
3399 (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0"))))
3400 (build-system julia-build-system)
3401 (home-page "https://github.com/JuliaStats/PDMats.jl")
3402 (synopsis
3403 "Uniform Interface for positive definite matrices of various structures")
3404 (description "PDMats.jl supports efficient computation on positive definite
3405 matrices of various structures. In particular, it provides uniform interfaces
3406 to use positive definite matrices of various structures for writing generic
3407 algorithms, while ensuring that the most efficient implementation is used in
3408 actual computation.")
3409 (license license:expat)))
3410
3411 (define-public julia-plotthemes
3412 (package
3413 (name "julia-plotthemes")
3414 (version "2.0.1")
3415 (source
3416 (origin
3417 (method git-fetch)
3418 (uri (git-reference
3419 (url "https://github.com/JuliaPlots/PlotThemes.jl")
3420 (commit (string-append "v" version))))
3421 (file-name (git-file-name name version))
3422 (sha256
3423 (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh"))))
3424 (build-system julia-build-system)
3425 (propagated-inputs
3426 `(("julia-plotutils" ,julia-plotutils)
3427 ("julia-requires" ,julia-requires)))
3428 (home-page "https://github.com/JuliaPlots/PlotThemes.jl")
3429 (synopsis "Themes for the Julia plotting package Plots.jl")
3430 (description
3431 "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.")
3432 (license license:expat)))
3433
3434 (define-public julia-plotutils
3435 (package
3436 (name "julia-plotutils")
3437 (version "1.0.15")
3438 (source
3439 (origin
3440 (method git-fetch)
3441 (uri (git-reference
3442 (url "https://github.com/JuliaPlots/PlotUtils.jl")
3443 (commit (string-append "v" version))))
3444 (file-name (git-file-name name version))
3445 (sha256
3446 (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105"))))
3447 (build-system julia-build-system)
3448 (propagated-inputs
3449 `(("julia-colors" ,julia-colors)
3450 ("julia-colorschemes" ,julia-colorschemes)
3451 ("julia-reexport" ,julia-reexport)))
3452 (native-inputs
3453 `(("julia-stablerngs" ,julia-stablerngs)))
3454 (home-page "https://github.com/JuliaPlots/PlotUtils.jl")
3455 (synopsis "Helper algorithms for building plotting components")
3456 (description "This package contains generic helper algorithms for building
3457 plotting components.")
3458 (license license:expat)))
3459
3460 (define-public julia-pooledarrays
3461 (package
3462 (name "julia-pooledarrays")
3463 (version "1.3.0")
3464 (source
3465 (origin
3466 (method git-fetch)
3467 (uri (git-reference
3468 (url "https://github.com/JuliaData/PooledArrays.jl")
3469 (commit (string-append "v" version))))
3470 (file-name (git-file-name name version))
3471 (sha256
3472 (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr"))))
3473 (build-system julia-build-system)
3474 (propagated-inputs
3475 `(("julia-dataapi" ,julia-dataapi)))
3476 (home-page "https://github.com/JuliaData/PooledArrays.jl")
3477 (synopsis "Pooled representation of arrays in Julia")
3478 (description "This package provides a pooled representation of arrays for
3479 purposes of compression when there are few unique elements.")
3480 (license license:expat)))
3481
3482 (define-public julia-positivefactorizations
3483 (package
3484 (name "julia-positivefactorizations")
3485 (version "0.2.4")
3486 (source
3487 (origin
3488 (method git-fetch)
3489 (uri (git-reference
3490 (url "https://github.com/timholy/PositiveFactorizations.jl")
3491 (commit (string-append "v" version))))
3492 (file-name (git-file-name name version))
3493 (sha256
3494 (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23"))))
3495 (build-system julia-build-system)
3496 (native-inputs
3497 `(("julia-forwarddiff" ,julia-forwarddiff)
3498 ("julia-reversediff" ,julia-reversediff)))
3499 (home-page "https://github.com/timholy/PositiveFactorizations.jl")
3500 (synopsis "Positive-definite \"approximations\" to matrices")
3501 (description "@code{PositiveFactorizations} is a package for computing a
3502 positive definite matrix decomposition (factorization) from an arbitrary
3503 symmetric input. The motivating application is optimization (Newton or
3504 quasi-Newton methods), in which the canonical search direction -H/g (H being the
3505 Hessian and g the gradient) may not be a descent direction if H is not positive
3506 definite.")
3507 (license license:expat)))
3508
3509 (define-public julia-preferences
3510 (package
3511 (name "julia-preferences")
3512 (version "1.2.2")
3513 (source
3514 (origin
3515 (method git-fetch)
3516 (uri (git-reference
3517 (url "https://github.com/JuliaPackaging/Preferences.jl")
3518 (commit (string-append "v" version))))
3519 (file-name (git-file-name name version))
3520 (sha256
3521 (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
3522 (build-system julia-build-system)
3523 (arguments
3524 `(#:tests? #f)) ; Tests try to mkdir /.julia
3525 (home-page "https://github.com/JuliaPackaging/Preferences.jl")
3526 (synopsis "Store configuration switches to TOML files")
3527 (description "The @code{Preferences} package provides an integrated way for
3528 packages to store configuration switches to persistent TOML files, and use those
3529 pieces of information at both run time and compile time in Julia. This enables
3530 the user to modify the behavior of a package, and have that choice reflected in
3531 everything from run time algorithm choice to code generation at compile time.")
3532 (license license:expat)))
3533
3534 (define-public julia-prettytables
3535 (package
3536 (name "julia-prettytables")
3537 (version "1.0.1")
3538 (source
3539 (origin
3540 (method git-fetch)
3541 (uri (git-reference
3542 (url "https://github.com/ronisbr/PrettyTables.jl")
3543 (commit (string-append "v" version))))
3544 (file-name (git-file-name name version))
3545 (sha256
3546 (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
3547 (build-system julia-build-system)
3548 (arguments
3549 `(#:phases
3550 (modify-phases %standard-phases
3551 (add-after 'link-depot 'skip-color-tests
3552 (lambda _
3553 (substitute* "test/text_backend.jl"
3554 ((".*colors\\.jl.*") ""))
3555 #t)))))
3556 (propagated-inputs
3557 `(("julia-crayons" ,julia-crayons)
3558 ("julia-formatting" ,julia-formatting)
3559 ("julia-reexport" ,julia-reexport)
3560 ("julia-tables" ,julia-tables)))
3561 (home-page "https://github.com/ronisbr/PrettyTables.jl")
3562 (synopsis "Print data in formatted tables")
3563 (description "This package has the purpose to print data in matrices in a
3564 human-readable format.")
3565 (license license:expat)))
3566
3567 (define-public julia-pycall
3568 (package
3569 (name "julia-pycall")
3570 (version "1.92.5")
3571 (source
3572 (origin
3573 (method git-fetch)
3574 (uri (git-reference
3575 (url "https://github.com/JuliaPy/PyCall.jl")
3576 (commit (string-append "v" version))))
3577 (file-name (git-file-name name version))
3578 (sha256
3579 (base32
3580 "1fj5d1ihnhnm0pl4hbx6hcd2bpdyhm8jiaqah2axsbd069j70saf"))))
3581 (build-system julia-build-system)
3582 (arguments
3583 `(#:imported-modules ((guix build python-build-system)
3584 ,@%julia-build-system-modules)
3585 #:modules ((guix build julia-build-system)
3586 (guix build utils)
3587 ((guix build python-build-system) #:prefix python:))
3588 #:phases
3589 (modify-phases %standard-phases
3590 (add-after 'link-depot 'remove-conda
3591 (lambda _
3592 (substitute* "Project.toml"
3593 ((".*Conda.*") ""))
3594 (substitute* (list "src/PyCall.jl"
3595 "test/runtests.jl")
3596 (("import Conda") ""))
3597 (substitute* "deps/depsutils.jl"
3598 (("Conda.PYTHONDIR") "\"/\""))
3599 #t))
3600 (add-after 'link-depot 'set-python
3601 (lambda* (#:key inputs outputs #:allow-other-keys)
3602 (let ((python (assoc-ref inputs "python")))
3603 (setenv "PYCALL_JL_RUNTIME_PYTHON"
3604 (string-append python "/bin/python3"))
3605 (with-output-to-file "deps/deps.jl"
3606 (lambda _
3607 (format #t
3608 "const python = \"~a/bin/python3\"~@
3609 const pyprogramname = \"~a/bin/python3\"~@
3610 const libpython = \"~a/lib/libpython~a.so.1.0\"~@
3611 const PYTHONHOME = \"~a\"~@
3612 const pyversion_build = v\"~a\"~@
3613 const conda = false~%"
3614 python
3615 python
3616 python
3617 (python:python-version python)
3618 python
3619 ,(package-version python))))
3620 #t)))
3621 (add-before 'check 'pre-check
3622 (lambda _
3623 (setenv "CI" "true")
3624 (setenv "JULIA_PKGEVAL" "true")
3625 #t)))))
3626 (propagated-inputs
3627 `(("julia-macrotools" ,julia-macrotools)
3628 ("julia-versionparsing" ,julia-versionparsing)))
3629 (inputs
3630 `(("python" ,python)))
3631 (native-inputs
3632 `(("python-numpy" ,python-numpy)))
3633 (home-page "https://github.com/JuliaPy/PyCall.jl")
3634 (synopsis "Call Python functions from the Julia language")
3635 (description "This package provides the ability to directly call and fully
3636 interoperate with Python from the Julia language. You can import arbitrary
3637 Python modules from Julia, call Python functions (with automatic conversion of
3638 types between Julia and Python), define Python classes from Julia methods, and
3639 share large data structures between Julia and Python without copying them.")
3640 (license license:expat)))
3641
3642 (define-public julia-pyplot
3643 (package
3644 (name "julia-pyplot")
3645 (version "2.10.0")
3646 (source
3647 (origin
3648 (method git-fetch)
3649 (uri (git-reference
3650 (url "https://github.com/JuliaPy/PyPlot.jl")
3651 (commit (string-append "v" version))))
3652 (file-name (git-file-name name version))
3653 (sha256
3654 (base32 "007zs0imfgs69f30pp2a3rc93kl0qiq7qjx6ig35z4wzkmps4skd"))))
3655 (build-system julia-build-system)
3656 (propagated-inputs
3657 `(("julia-colors" ,julia-colors)
3658 ("julia-latexstrings" ,julia-latexstrings)
3659 ("julia-pycall" ,julia-pycall)
3660 ("julia-versionparsing" ,julia-versionparsing)
3661 ;; python-matplotlib is expected to be available at runtime.
3662 ("python-matplotlib" ,python-matplotlib)))
3663 (home-page "https://github.com/JuliaPy/PyPlot.jl")
3664 (synopsis "Plotting for Julia based on matplotlib.pyplot")
3665 (description "This package provides a Julia interface to the Matplotlib
3666 plotting library from Python, and specifically to the @code{matplotlib.pyplot}
3667 module. PyPlot uses the Julia PyCall package to call Matplotlib directly from
3668 Julia with little or no overhead (arrays are passed without making a copy).")
3669 (license license:expat)))
3670
3671 (define-public julia-quadgk
3672 (package
3673 (name "julia-quadgk")
3674 (version "2.4.1")
3675 (source
3676 (origin
3677 (method git-fetch)
3678 (uri (git-reference
3679 (url "https://github.com/JuliaMath/QuadGK.jl")
3680 (commit (string-append "v" version))))
3681 (file-name (git-file-name name version))
3682 (sha256
3683 (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
3684 (build-system julia-build-system)
3685 (propagated-inputs
3686 `(("julia-datastructures" ,julia-datastructures)))
3687 (home-page "https://github.com/JuliaMath/QuadGK.jl")
3688 (synopsis "Adaptive 1d numerical Gauss–Kronrod integration")
3689 (description "This package provides support for one-dimensional numerical
3690 integration in Julia using adaptive Gauss-Kronrod quadrature. The code was
3691 originally part of Base Julia. It supports integration of arbitrary numeric
3692 types, including arbitrary precision (@code{BigFloat}), and even integration of
3693 arbitrary normed vector spaces (e.g. matrix-valued integrands).")
3694 (license license:expat)))
3695
3696 (define-public julia-quadmath
3697 (package
3698 (name "julia-quadmath")
3699 (version "0.5.5")
3700 (source
3701 (origin
3702 (method git-fetch)
3703 (uri (git-reference
3704 (url "https://github.com/JuliaMath/Quadmath.jl")
3705 (commit (string-append "v" version))))
3706 (file-name (git-file-name name version))
3707 (sha256
3708 (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
3709 (build-system julia-build-system)
3710 (arguments
3711 `(#:phases
3712 (modify-phases %standard-phases
3713 (add-after 'link-depot 'hardcode-libmath-location
3714 (lambda* (#:key inputs #:allow-other-keys)
3715 (let ((gcclib (assoc-ref inputs "gcc:lib")))
3716 (substitute* "src/Quadmath.jl"
3717 (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
3718 (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
3719 #t))))))
3720 (propagated-inputs
3721 `(("julia-requires" ,julia-requires)))
3722 (inputs
3723 `(("gcc:lib" ,gcc "lib")))
3724 (native-inputs
3725 `(("julia-specialfunctions" ,julia-specialfunctions)))
3726 (home-page "https://github.com/JuliaMath/Quadmath.jl")
3727 (synopsis "Float128 and libquadmath for the Julia language")
3728 (description "This is a Julia interface to @code{libquadmath}, providing a
3729 @code{Float128} type corresponding to the IEEE754 binary128 floating point
3730 format.")
3731 (license license:expat)))
3732
3733 (define-public julia-quaternions
3734 (package
3735 (name "julia-quaternions")
3736 (version "0.4.2")
3737 (source
3738 (origin
3739 (method git-fetch)
3740 (uri (git-reference
3741 (url "https://github.com/JuliaGeometry/Quaternions.jl")
3742 (commit (string-append "v" version))))
3743 (file-name (git-file-name name version))
3744 (sha256
3745 (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s"))))
3746 (build-system julia-build-system)
3747 (propagated-inputs
3748 `(("julia-dualnumbers" ,julia-dualnumbers)))
3749 (home-page "https://github.com/JuliaGeometry/Quaternions.jl")
3750 (synopsis "Quaternion and dual-quaternion functionality")
3751 (description "Quaternions are best known for their suitability as
3752 representations of 3D rotational orientation. They can also be viewed as an
3753 extension of complex numbers.")
3754 (license license:expat)))
3755
3756 (define-public julia-queryoperators
3757 (package
3758 (name "julia-queryoperators")
3759 (version "0.9.3")
3760 (source
3761 (origin
3762 (method git-fetch)
3763 (uri (git-reference
3764 (url "https://github.com/queryverse/QueryOperators.jl")
3765 (commit (string-append "v" version))))
3766 (file-name (git-file-name name version))
3767 (sha256
3768 (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22"))))
3769 (build-system julia-build-system)
3770 (propagated-inputs
3771 `(("julia-datastructures" ,julia-datastructures)
3772 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3773 ("julia-tableshowutils" ,julia-tableshowutils)))
3774 (home-page "https://github.com/queryverse/QueryOperators.jl")
3775 (synopsis "Query operators for Julia")
3776 (description "This package contains the underlying query operators that are
3777 exposed to users in @code{Query.jl}.")
3778 (license license:expat)))
3779
3780 (define-public julia-rangearrays
3781 (package
3782 (name "julia-rangearrays")
3783 (version "0.3.2")
3784 (source
3785 (origin
3786 (method git-fetch)
3787 (uri (git-reference
3788 (url "https://github.com/JuliaArrays/RangeArrays.jl")
3789 (commit (string-append "v" version))))
3790 (file-name (git-file-name name version))
3791 (sha256
3792 (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg"))))
3793 (build-system julia-build-system)
3794 (home-page "https://github.com/JuliaArrays/RangeArrays.jl")
3795 (synopsis "Array data structures with autogenerated columns")
3796 (description "The goal of RangeArrays is to provide efficient and convenient
3797 array data structures where the columns of the arrays are generated (on the fly)
3798 by Ranges.")
3799 (license license:expat)))
3800
3801 (define-public julia-ratios
3802 (package
3803 (name "julia-ratios")
3804 (version "0.4.0")
3805 (source
3806 (origin
3807 (method git-fetch)
3808 (uri (git-reference
3809 (url "https://github.com/timholy/Ratios.jl")
3810 (commit (string-append "v" version))))
3811 (file-name (git-file-name name version))
3812 (sha256
3813 (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh"))))
3814 (build-system julia-build-system)
3815 (home-page "https://github.com/timholy/Ratios.jl")
3816 (synopsis "Faster Rational-like types for Julia")
3817 (description "This package provides types similar to Julia's @code{Rational}
3818 type, which make some sacrifices but have better computational performance.")
3819 (license license:expat)))
3820
3821 (define-public julia-recipesbase
3822 (package
3823 (name "julia-recipesbase")
3824 (version "1.1.1")
3825 (source
3826 (origin
3827 (method git-fetch)
3828 (uri (git-reference
3829 (url "https://github.com/JuliaPlots/RecipesBase.jl")
3830 (commit (string-append "v" version))))
3831 (file-name (git-file-name name version))
3832 (sha256
3833 (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
3834 (build-system julia-build-system)
3835 (home-page "https://github.com/JuliaPlots/RecipesBase.jl")
3836 (synopsis "Define transformation recipes on user types")
3837 (description "This package implements handy macros @code{@@recipe} and
3838 @code{@@series} which will define a custom transformation and attach attributes
3839 for user types. Its design is an attempt to simplify and generalize the summary
3840 and display of types and data from external packages. With this package it is
3841 possible to describe visualization routines that can be used as components in
3842 more complex visualizations.")
3843 (license license:expat)))
3844
3845 (define-public julia-recipespipeline
3846 (package
3847 (name "julia-recipespipeline")
3848 (version "0.3.4")
3849 (source
3850 (origin
3851 (method git-fetch)
3852 (uri (git-reference
3853 (url "https://github.com/JuliaPlots/RecipesPipeline.jl")
3854 (commit (string-append "v" version))))
3855 (file-name (git-file-name name version))
3856 (sha256
3857 (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7"))))
3858 (build-system julia-build-system)
3859 (arguments
3860 `(#:tests? #f)) ; Cycle with Plots.jl.
3861 (propagated-inputs
3862 `(("julia-nanmath" ,julia-nanmath)
3863 ("julia-plotutils" ,julia-plotutils)
3864 ("julia-recipesbase" ,julia-recipesbase)))
3865 (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/")
3866 (synopsis "Utilities for processing recipes")
3867 (description "This package was factored out of @code{Plots.jl} to allow any
3868 other plotting package to use the recipe pipeline. In short, the extremely
3869 lightweight @code{RecipesBase.jl} package can be depended on by any package to
3870 define \"recipes\": plot specifications of user-defined types, as well as custom
3871 plot types. @code{RecipePipeline.jl} contains the machinery to translate these
3872 recipes to full specifications for a plot.")
3873 (license license:expat)))
3874
3875 (define-public julia-recursivearraytools
3876 (package
3877 (name "julia-recursivearraytools")
3878 (version "2.16.1")
3879 (source
3880 (origin
3881 (method git-fetch)
3882 (uri (git-reference
3883 (url "https://github.com/SciML/RecursiveArrayTools.jl")
3884 (commit (string-append "v" version))))
3885 (file-name (git-file-name name version))
3886 (sha256
3887 (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
3888 (build-system julia-build-system)
3889 (arguments
3890 `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
3891 (propagated-inputs
3892 `(("julia-arrayinterface" ,julia-arrayinterface)
3893 ("julia-chainrulescore" ,julia-chainrulescore)
3894 ("julia-docstringextensions" ,julia-docstringextensions)
3895 ("julia-recipesbase" ,julia-recipesbase)
3896 ("julia-requires" ,julia-requires)
3897 ("julia-staticarrays" ,julia-staticarrays)
3898 ("julia-zygoterules" ,julia-zygoterules)))
3899 ;(native-inputs
3900 ; `(("julia-forwarddiff" ,julia-forwarddiff)
3901 ; ("julia-nlsolve" ,julia-nlsolve)
3902 ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq)
3903 ; ("julia-structarrays" ,julia-structarrays)
3904 ; ("julia-zygote" ,julia-zygote)))
3905 (home-page "https://github.com/SciML/RecursiveArrayTools.jl")
3906 (synopsis "Tools for handling objects like arrays of arrays and deeper nestings")
3907 (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with
3908 recursive arrays like arrays of arrays.")
3909 (license license:expat)))
3910
3911 (define-public julia-reexport
3912 (package
3913 (name "julia-reexport")
3914 (version "1.2.2")
3915 (source
3916 (origin
3917 (method git-fetch)
3918 (uri (git-reference
3919 (url "https://github.com/simonster/Reexport.jl")
3920 (commit (string-append "v" version))))
3921 (file-name (git-file-name name version))
3922 (sha256
3923 (base32 "0inf5q6f01ncd5c5wm8mwzv2hs627ng6xlh8dhrlflp321hbamwf"))))
3924 (build-system julia-build-system)
3925 (home-page "https://github.com/simonster/Reexport.jl")
3926 (synopsis "Re-export modules and symbols")
3927 (description "This package provides tools to re-export modules and symbols.")
3928 (license license:expat)))
3929
3930 (define-public julia-referencetests
3931 (package
3932 (name "julia-referencetests")
3933 (version "0.9.7")
3934 (source
3935 (origin
3936 (method git-fetch)
3937 (uri (git-reference
3938 (url "https://github.com/JuliaTesting/ReferenceTests.jl")
3939 (commit (string-append "v" version))))
3940 (file-name (git-file-name name version))
3941 (sha256
3942 (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
3943 (build-system julia-build-system)
3944 (arguments
3945 `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
3946 (propagated-inputs
3947 `(("julia-deepdiffs" ,julia-deepdiffs)
3948 ("julia-distances" ,julia-distances)
3949 ("julia-fileio" ,julia-fileio)
3950 ("julia-imagecore" ,julia-imagecore)
3951 ("julia-imageinterminal" ,julia-imageinterminal)))
3952 ;(native-inputs
3953 ; `(("julia-csvfiles" ,julia-csvfiles)
3954 ; ("julia-dataframes" ,julia-dataframes)
3955 ; ("julia-gr" ,julia-gr)
3956 ; ("julia-imagemagick" ,julia-imagemagick)
3957 ; ("julia-imagetransformations" ,julia-imagetransformations)
3958 ; ("julia-plots" ,julia-plots)
3959 ; ("julia-testimages" ,julia-testimages)))
3960 (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/")
3961 (synopsis "Utility package for comparing data against reference files")
3962 (description "@code{ReferenceTests.jl} is a Julia package that adds a couple
3963 of additional macros to your testing toolbox. In particular, it focuses on
3964 functionality for testing values against reference files, which in turn the
3965 package can help create and update if need be.")
3966 (license license:expat)))
3967
3968 (define-public julia-requires
3969 (package
3970 (name "julia-requires")
3971 (version "1.1.3")
3972 (source
3973 (origin
3974 (method git-fetch)
3975 (uri (git-reference
3976 (url "https://github.com/JuliaPackaging/Requires.jl/")
3977 (commit (string-append "v" version))))
3978 (file-name (git-file-name name version))
3979 (sha256
3980 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
3981 (build-system julia-build-system)
3982 (arguments
3983 `(#:parallel-tests? #f))
3984 (inputs ;required for test
3985 `(("julia-example" ,julia-example)))
3986 (propagated-inputs
3987 `(("julia-colors" ,julia-colors)))
3988 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
3989 (synopsis "Faster package loader")
3990 (description "This package make loading packages faster, maybe. It
3991 supports specifying glue code in packages which will load automatically when
3992 another package is loaded, so that explicit dependencies (and long load times)
3993 can be avoided.")
3994 (license license:expat)))
3995
3996 (define-public julia-reversediff
3997 (package
3998 (name "julia-reversediff")
3999 (version "1.9.0")
4000 (source
4001 (origin
4002 (method git-fetch)
4003 (uri (git-reference
4004 (url "https://github.com/JuliaDiff/ReverseDiff.jl")
4005 (commit (string-append "v" version))))
4006 (file-name (git-file-name name version))
4007 (sha256
4008 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl"))))
4009 (build-system julia-build-system)
4010 (propagated-inputs
4011 `(("julia-diffresults" ,julia-diffresults)
4012 ("julia-diffrules" ,julia-diffrules)
4013 ("julia-forwarddiff" ,julia-forwarddiff)
4014 ("julia-functionwrappers" ,julia-functionwrappers)
4015 ("julia-macrotools" ,julia-macrotools)
4016 ("julia-nanmath" ,julia-nanmath)
4017 ("julia-specialfunctions" ,julia-specialfunctions)
4018 ("julia-staticarrays" ,julia-staticarrays)))
4019 (native-inputs
4020 `(("julia-difftests" ,julia-difftests)
4021 ("julia-fillarrays" ,julia-fillarrays)))
4022 (home-page "https://github.com/JuliaDiff/ReverseDiff.jl")
4023 (synopsis "Reverse Mode Automatic Differentiation for Julia")
4024 (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based
4025 reverse mode @acronym{AD, automatic differentiation}, that implements methods to
4026 take gradients, Jacobians, Hessians, and higher-order derivatives of native
4027 Julia functions (or any callable object, really).")
4028 (license license:expat)))
4029
4030 (define-public julia-richardson
4031 (package
4032 (name "julia-richardson")
4033 (version "1.4.0")
4034 (source
4035 (origin
4036 (method git-fetch)
4037 (uri (git-reference
4038 (url "https://github.com/JuliaMath/Richardson.jl")
4039 (commit (string-append "v" version))))
4040 (file-name (git-file-name name version))
4041 (sha256
4042 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
4043 (build-system julia-build-system)
4044 (home-page "https://juliapackages.com/p/richardson")
4045 (synopsis "Extrapolate function using Richardson method")
4046 (description "This package provides a function extrapolate that
4047 extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
4048 only at a geometric sequence of points @code{> x0} (or optionally @code{<
4049 x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
4050 tableau, which adaptively increases the degree of an extrapolation polynomial
4051 until convergence is achieved to a desired tolerance (or convergence stalls
4052 due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
4053 high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
4054 other power series in @code{h}.")
4055 (license license:expat)))
4056
4057 (define-public julia-rotations
4058 ;; This is the first commit with support for julia-1.6.
4059 (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788")
4060 (revision "1"))
4061 (package
4062 (name "julia-rotations")
4063 (version (git-version "1.0.2" revision commit))
4064 (source
4065 (origin
4066 (method git-fetch)
4067 (uri (git-reference
4068 (url "https://github.com/JuliaGeometry/Rotations.jl")
4069 (commit commit)))
4070 (file-name (git-file-name name version))
4071 (sha256
4072 (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19"))))
4073 (build-system julia-build-system)
4074 (propagated-inputs
4075 `(("julia-staticarrays" ,julia-staticarrays)))
4076 (native-inputs
4077 `(("julia-benchmarktools" ,julia-benchmarktools)
4078 ("julia-forwarddiff" ,julia-forwarddiff)
4079 ("julia-unitful" ,julia-unitful)))
4080 (home-page "https://github.com/JuliaGeometry/Rotations.jl")
4081 (synopsis "Julia implementations for different rotation parameterisations")
4082 (description "This package implements various 3D rotation parameterizations
4083 and defines conversions between them. At their heart, each rotation
4084 parameterization is a 3×3 unitary (orthogonal) matrix (based on the
4085 @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin
4086 through matrix-vector multiplication.")
4087 (license license:expat))))
4088
4089 (define-public julia-safetestsets
4090 ;; The only release tag is the first commit in the repository.
4091 (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
4092 (revision "1"))
4093 (package
4094 (name "julia-safetestsets")
4095 (version (git-version "0.0.1" revision commit))
4096 (source
4097 (origin
4098 (method git-fetch)
4099 (uri (git-reference
4100 (url "https://github.com/YingboMa/SafeTestsets.jl")
4101 (commit commit)))
4102 (file-name (git-file-name name version))
4103 (sha256
4104 (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
4105 (build-system julia-build-system)
4106 (arguments
4107 `(#:julia-package-name "SafeTestsets"
4108 #:julia-package-uuid "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"))
4109 (native-inputs
4110 `(("julia-staticarrays" ,julia-staticarrays)))
4111 (home-page "https://github.com/YingboMa/SafeTestsets.jl")
4112 (synopsis "Julia's testset in a module")
4113 (description "This package contains the testset from Julia, packaged into
4114 a loadable module.")
4115 (license license:expat))))
4116
4117 (define-public julia-sass
4118 (package
4119 (name "julia-sass")
4120 (version "0.2.0")
4121 (source
4122 (origin
4123 (method git-fetch)
4124 (uri (git-reference
4125 (url "https://github.com/piever/Sass.jl")
4126 (commit (string-append "v" version))))
4127 (file-name (git-file-name name version))
4128 (sha256
4129 (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
4130 (build-system julia-build-system)
4131 (propagated-inputs
4132 `(("julia-libsass-jll" ,julia-libsass-jll)))
4133 (home-page "https://github.com/piever/Sass.jl")
4134 (synopsis "Compile scss and sass file to css")
4135 (description "This package provides a simple Julian API to use the
4136 @code{libsass} library to compile scss and sass files to css.")
4137 (license license:expat)))
4138
4139 (define-public julia-scratch
4140 (package
4141 (name "julia-scratch")
4142 (version "1.1.0")
4143 (source
4144 (origin
4145 (method git-fetch)
4146 (uri (git-reference
4147 (url "https://github.com/JuliaPackaging/Scratch.jl")
4148 (commit (string-append "v" version))))
4149 (file-name (git-file-name name version))
4150 (sha256
4151 (base32
4152 "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
4153 (build-system julia-build-system)
4154 (arguments
4155 `(#:tests? #f)) ; Test suite tries to access the Julia package registry.
4156 (home-page "https://github.com/JuliaPackaging/Scratch.jl")
4157 (synopsis "Scratch spaces for all your persistent mutable data needs")
4158 (description "This repository implements the scratch spaces API for
4159 package-specific mutable containers of data. These spaces can contain datasets,
4160 text, binaries, or any other kind of data that would be convenient to store in
4161 a location specific to your package. As compared to Artifacts, these containers
4162 of data are mutable. Because the scratch space location on disk is not very
4163 user-friendly, scratch spaces should, in general, not be used for a storing
4164 files that the user must interact with through a file browser.")
4165 (license license:expat)))
4166
4167 (define-public julia-showoff
4168 (package
4169 (name "julia-showoff")
4170 (version "1.0.2")
4171 (source
4172 (origin
4173 (method git-fetch)
4174 (uri (git-reference
4175 (url "https://github.com/JuliaGraphics/Showoff.jl")
4176 (commit (string-append "v" version))))
4177 (file-name (git-file-name name version))
4178 (sha256
4179 (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53"))))
4180 (build-system julia-build-system)
4181 (home-page "https://github.com/JuliaGraphics/Showoff.jl")
4182 (synopsis "Nicely format an array of n things for tables and plots")
4183 (description "@code{Showoff} provides an interface for consistently
4184 formatting an array of n things, e.g. numbers, dates, unitful values. It's used
4185 in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.")
4186 (license license:expat)))
4187
4188 (define-public julia-simpletraits
4189 (package
4190 (name "julia-simpletraits")
4191 (version "0.9.4")
4192 (source
4193 (origin
4194 (method git-fetch)
4195 (uri (git-reference
4196 (url "https://github.com/mauro3/SimpleTraits.jl")
4197 (commit (string-append "v" version))))
4198 (file-name (git-file-name name version))
4199 (sha256
4200 (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05"))))
4201 (build-system julia-build-system)
4202 (propagated-inputs
4203 `(("julia-macrotools" ,julia-macrotools)))
4204 (home-page "https://github.com/mauro3/SimpleTraits.jl")
4205 (synopsis "Simple Traits for Julia")
4206 (description "This package provides a macro-based implementation of traits.
4207 The main idea behind traits is to group types outside the type-hierarchy and to
4208 make dispatch work with that grouping. The difference to Union-types is that
4209 types can be added to a trait after the creation of the trait, whereas Union
4210 types are fixed after creation.")
4211 (license license:expat)))
4212
4213 (define-public julia-sortingalgorithms
4214 (package
4215 (name "julia-sortingalgorithms")
4216 (version "1.0.1")
4217 (source
4218 (origin
4219 (method git-fetch)
4220 (uri (git-reference
4221 (url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
4222 (commit (string-append "v" version))))
4223 (file-name (git-file-name name version))
4224 (sha256
4225 (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb"))))
4226 (build-system julia-build-system)
4227 (arguments
4228 `(#:tests? #f)) ; cycle with StatsBase.jl
4229 (propagated-inputs
4230 `(("julia-datastructures" ,julia-datastructures)))
4231 ;(native-inputs
4232 ; `(("julia-statsbase" ,julia-statsbase)))
4233 (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
4234 (synopsis "Extra sorting algorithms extending Julia's sorting API")
4235 (description "The SortingAlgorithms package provides three sorting
4236 algorithms that can be used with Julia's standard sorting API: heapsort,
4237 timsort and radixsort.")
4238 (license license:expat)))
4239
4240 (define-public julia-specialfunctions
4241 (package
4242 (name "julia-specialfunctions")
4243 (version "1.6.0")
4244 (source
4245 (origin
4246 (method git-fetch)
4247 (uri (git-reference
4248 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
4249 (commit (string-append "v" version))))
4250 (file-name (git-file-name name version))
4251 (sha256
4252 (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0"))))
4253 (build-system julia-build-system)
4254 (inputs
4255 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
4256 (propagated-inputs
4257 `(("julia-chainrulescore" ,julia-chainrulescore)
4258 ("julia-logexpfunctions" ,julia-logexpfunctions)
4259 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
4260 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
4261 (synopsis "Special mathematical functions")
4262 (description "This package provides special mathematical functions,
4263 including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
4264 cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
4265 polygamma functions.")
4266 (license license:expat)))
4267
4268 (define-public julia-splitapplycombine
4269 (package
4270 (name "julia-splitapplycombine")
4271 (version "1.1.4")
4272 (source
4273 (origin
4274 (method git-fetch)
4275 (uri (git-reference
4276 (url "https://github.com/JuliaData/SplitApplyCombine.jl")
4277 (commit (string-append "v" version))))
4278 (file-name (git-file-name name version))
4279 (sha256
4280 (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x"))))
4281 (build-system julia-build-system)
4282 (propagated-inputs
4283 `(("julia-dictionaries" ,julia-dictionaries)
4284 ("julia-indexing" ,julia-indexing)))
4285 (home-page "https://github.com/JuliaData/SplitApplyCombine.jl")
4286 (synopsis "Split-apply-combine strategies for Julia")
4287 (description "@code{SplitApplyCombine.jl} provides high-level, generic tools
4288 for manipulating data - particularly focussing on data in nested containers. An
4289 emphasis is placed on ensuring split-apply-combine strategies are easy to apply,
4290 and work reliably for arbitrary iterables and in an optimized way with the data
4291 structures included in Julia's standard library.")
4292 (license license:expat)))
4293
4294 (define-public julia-stablerngs
4295 (package
4296 (name "julia-stablerngs")
4297 (version "1.0.0")
4298 (source
4299 (origin
4300 (method git-fetch)
4301 (uri (git-reference
4302 (url "https://github.com/JuliaRandom/StableRNGs.jl")
4303 (commit (string-append "v" version))))
4304 (file-name (git-file-name name version))
4305 (sha256
4306 (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
4307 (build-system julia-build-system)
4308 (home-page "https://github.com/JuliaRandom/StableRNGs.jl")
4309 (synopsis "Julia RNG with stable streams")
4310 (description "This package intends to provide a simple RNG with stable
4311 streams, suitable for tests in packages which need reproducible streams of
4312 random numbers across Julia versions. Indeed, the Julia RNGs provided by
4313 default are documented to have non-stable streams (which for example enables
4314 some performance improvements).")
4315 (license license:expat)))
4316
4317 (define-public julia-stackviews
4318 (package
4319 (name "julia-stackviews")
4320 (version "0.1.1")
4321 (source
4322 (origin
4323 (method git-fetch)
4324 (uri (git-reference
4325 (url "https://github.com/JuliaArrays/StackViews.jl")
4326 (commit (string-append "v" version))))
4327 (file-name (git-file-name name version))
4328 (sha256
4329 (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
4330 (build-system julia-build-system)
4331 (arguments
4332 `(#:phases
4333 (modify-phases %standard-phases
4334 (add-after 'link-depot 'skip-doctest
4335 (lambda _
4336 (substitute* "test/runtests.jl"
4337 ((".*doctest.*") ""))
4338 #t)))))
4339 (propagated-inputs
4340 `(("julia-offsetarrays" ,julia-offsetarrays)))
4341 (native-inputs
4342 `(("julia-aqua" ,julia-aqua)
4343 ("julia-documenter" ,julia-documenter)))
4344 (home-page "https://github.com/JuliaArrays/StackViews.jl")
4345 (synopsis "No more catcat")
4346 (description "StackViews provides only one array type: @code{StackView}.
4347 There are multiple ways to understand @code{StackView}:
4348 @itemize
4349 @item inverse of @code{eachslice}
4350 @item @code{cat} variant
4351 @item view object
4352 @item lazy version of @code{repeat} special case
4353 @end itemize")
4354 (license license:expat)))
4355
4356 (define-public julia-static
4357 (package
4358 (name "julia-static")
4359 (version "0.3.0")
4360 (source
4361 (origin
4362 (method git-fetch)
4363 (uri (git-reference
4364 (url "https://github.com/SciML/Static.jl")
4365 (commit (string-append "v" version))))
4366 (file-name (git-file-name name version))
4367 (sha256
4368 (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2"))))
4369 (build-system julia-build-system)
4370 (propagated-inputs
4371 `(("julia-ifelse" ,julia-ifelse)))
4372 (native-inputs
4373 `(("julia-aqua" ,julia-aqua)))
4374 (home-page "https://github.com/SciML/Static.jl")
4375 (synopsis "Static types useful for dispatch and generated functions")
4376 (description "Static.jl defines a limited set of statically parameterized
4377 types and a common interface that is shared between them.")
4378 (license license:expat)))
4379
4380 (define-public julia-staticarrays
4381 (package
4382 (name "julia-staticarrays")
4383 (version "1.2.13")
4384 (source
4385 (origin
4386 (method git-fetch)
4387 (uri (git-reference
4388 (url "https://github.com/JuliaArrays/StaticArrays.jl")
4389 (commit (string-append "v" version))))
4390 (file-name (git-file-name name version))
4391 (sha256
4392 (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79"))))
4393 (build-system julia-build-system)
4394 (inputs
4395 `(("julia-benchmarktools" ,julia-benchmarktools)))
4396 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
4397 (synopsis "Statically sized arrays")
4398 (description "This package provides a framework for implementing
4399 statically sized arrays in Julia, using the abstract type
4400 @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
4401 @code{StaticArray} will provide fast implementations of common array and
4402 linear algebra operations.")
4403 (license license:expat)))
4404
4405 (define-public julia-statsapi
4406 (package
4407 (name "julia-statsapi")
4408 (version "1.0.0")
4409 (source
4410 (origin
4411 (method git-fetch)
4412 (uri (git-reference
4413 (url "https://github.com/JuliaStats/StatsAPI.jl")
4414 (commit (string-append "v" version))))
4415 (file-name (git-file-name name version))
4416 (sha256
4417 (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv"))))
4418 (build-system julia-build-system)
4419 (home-page "https://juliastats.org/")
4420 (synopsis "Statistics-focused namespace for packages to share functions")
4421 (description "This package provides a namespace for data-related generic
4422 function definitions to solve the optional dependency problem; packages wishing
4423 to share and/or extend functions can avoid depending directly on each other by
4424 moving the function definition to @code{StatsAPI.jl} and each package taking a
4425 dependency on it.")
4426 (license license:expat)))
4427
4428 (define-public julia-statsbase
4429 (package
4430 (name "julia-statsbase")
4431 (version "0.33.8")
4432 (source
4433 (origin
4434 (method git-fetch)
4435 (uri (git-reference
4436 (url "https://github.com/JuliaStats/StatsBase.jl")
4437 (commit (string-append "v" version))))
4438 (file-name (git-file-name name version))
4439 (sha256
4440 (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi"))))
4441 (build-system julia-build-system)
4442 (propagated-inputs
4443 `(("julia-dataapi" ,julia-dataapi)
4444 ("julia-datastructures" ,julia-datastructures)
4445 ("julia-missings" ,julia-missings)
4446 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
4447 ("julia-statsapi" ,julia-statsapi)))
4448 (native-inputs
4449 `(("julia-stablerngs" ,julia-stablerngs)))
4450 (home-page "https://github.com/JuliaStats/StatsBase.jl")
4451 (synopsis "Basic statistics for Julia")
4452 (description "StatsBase.jl is a Julia package that provides basic support
4453 for statistics. Particularly, it implements a variety of statistics-related
4454 functions, such as scalar statistics, high-order moment computation, counting,
4455 ranking, covariances, sampling, and empirical density estimation.")
4456 (license license:expat)))
4457
4458 (define-public julia-stringdistances
4459 (package
4460 (name "julia-stringdistances")
4461 (version "0.10.0")
4462 (source
4463 (origin
4464 (method git-fetch)
4465 (uri (git-reference
4466 (url "https://github.com/matthieugomez/StringDistances.jl")
4467 (commit (string-append "v" version))))
4468 (file-name (git-file-name name version))
4469 (sha256
4470 (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7"))))
4471 (build-system julia-build-system)
4472 (propagated-inputs
4473 `(("julia-distances" ,julia-distances)))
4474 (home-page "https://github.com/matthieugomez/StringDistances.jl")
4475 (synopsis "String Distances in Julia")
4476 (description "This package provides string distances in Julia. Distances
4477 are defined for @code{AbstractStrings}, and any iterator that define
4478 @code{length()}. The package also defines Distance \"modifiers\" that can be
4479 applied to any distance.")
4480 (license license:expat)))
4481
4482 (define-public julia-structarrays
4483 (package
4484 (name "julia-structarrays")
4485 (version "0.6.3")
4486 (source
4487 (origin
4488 (method git-fetch)
4489 (uri (git-reference
4490 (url "https://github.com/JuliaArrays/StructArrays.jl")
4491 (commit (string-append "v" version))))
4492 (file-name (git-file-name name version))
4493 (sha256
4494 (base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v"))))
4495 (build-system julia-build-system)
4496 (propagated-inputs
4497 `(("julia-dataapi" ,julia-dataapi)
4498 ("julia-staticarrays" ,julia-staticarrays)
4499 ("julia-tables" ,julia-tables)))
4500 (native-inputs
4501 `(("julia-documenter" ,julia-documenter)
4502 ("julia-offsetarrays" ,julia-offsetarrays)
4503 ("julia-pooledarrays" ,julia-pooledarrays)
4504 ("julia-typedtables" ,julia-typedtables)
4505 ("julia-weakrefstrings" ,julia-weakrefstrings)))
4506 (home-page "https://github.com/JuliaArrays/StructArrays.jl")
4507 (synopsis "Efficient implementation of struct arrays in Julia")
4508 (description "This package introduces the type @code{StructArray} which is
4509 an @code{AbstractArray} whose elements are @code{struct} (for example
4510 @code{NamedTuples}, or @code{ComplexF64}, or a custom user defined
4511 @code{struct}). While a @code{StructArray} iterates @code{structs}, the layout
4512 is column based (meaning each field of the @code{struct} is stored in a separate
4513 @code{Array}).")
4514 (license license:expat)))
4515
4516 (define-public julia-structtypes
4517 (package
4518 (name "julia-structtypes")
4519 (version "1.7.2")
4520 (source
4521 (origin
4522 (method git-fetch)
4523 (uri (git-reference
4524 (url "https://github.com/JuliaData/StructTypes.jl")
4525 (commit (string-append "v" version))))
4526 (file-name (git-file-name name version))
4527 (sha256
4528 (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
4529 (build-system julia-build-system)
4530 (home-page "https://juliadata.github.io/StructTypes.jl/stable/")
4531 (synopsis "Abstract definitions and convenience methods for Julia objects")
4532 (description "This package provides the @code{StructTypes.StructType} trait
4533 for Julia types to declare the kind of \"struct\" they are, providing
4534 serialization/deserialization packages patterns and strategies to automatically
4535 construct objects.")
4536 (license license:expat)))
4537
4538 (define-public julia-suppressor
4539 (package
4540 (name "julia-suppressor")
4541 (version "0.2.0")
4542 (source
4543 (origin
4544 (method git-fetch)
4545 (uri (git-reference
4546 (url "https://github.com/JuliaIO/Suppressor.jl")
4547 (commit (string-append "v" version))))
4548 (file-name (git-file-name name version))
4549 (sha256
4550 (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
4551 (build-system julia-build-system)
4552 (home-page "https://github.com/JuliaIO/Suppressor.jl")
4553 (synopsis "Capture stdout and sterr")
4554 (description "Julia macros for suppressing and/or capturing output (stdout),
4555 warnings (stderr) or both streams at the same time.")
4556 (license license:expat)))
4557
4558 (define-public julia-tableiointerface
4559 (package
4560 (name "julia-tableiointerface")
4561 (version "0.1.6")
4562 (source
4563 (origin
4564 (method git-fetch)
4565 (uri (git-reference
4566 (url "https://github.com/lungben/TableIOInterface.jl")
4567 (commit (string-append "v" version))))
4568 (file-name (git-file-name name version))
4569 (sha256
4570 (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"))))
4571 (build-system julia-build-system)
4572 (home-page "https://github.com/lungben/TableIOInterface.jl")
4573 (synopsis "File formats based on file extensions")
4574 (description "This package determines tabular file formats based on file
4575 extensions. It is intended to be the base both for @code{TableIO.jl} and for
4576 the @code{Pluto.jl} tabular data import functionality.")
4577 (license license:expat)))
4578
4579 (define-public julia-tables
4580 (package
4581 (name "julia-tables")
4582 (version "1.4.4")
4583 (source
4584 (origin
4585 (method git-fetch)
4586 (uri (git-reference
4587 (url "https://github.com/JuliaData/Tables.jl")
4588 (commit (string-append "v" version))))
4589 (file-name (git-file-name name version))
4590 (sha256
4591 (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb"))))
4592 (build-system julia-build-system)
4593 (propagated-inputs
4594 `(("julia-dataapi" ,julia-dataapi)
4595 ("julia-datavalueinterfaces" ,julia-datavalueinterfaces)
4596 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
4597 ("julia-tabletraits" ,julia-tabletraits)))
4598 (native-inputs
4599 `(("julia-datavalues" ,julia-datavalues)
4600 ("julia-queryoperators" ,julia-queryoperators)))
4601 (home-page "https://github.com/JuliaData/Tables.jl")
4602 (synopsis "Interface for tables in Julia")
4603 (description "The @code{Tables.jl} package provides simple, yet powerful
4604 interface functions for working with all kinds tabular data.")
4605 (license license:expat)))
4606
4607 (define-public julia-tableshowutils
4608 ;; The 0.2.5 release is not fully compatable with newer versions of Julia.
4609 (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460")
4610 (revision "1"))
4611 (package
4612 (name "julia-tableshowutils")
4613 (version "0.2.5")
4614 (source
4615 (origin
4616 (method git-fetch)
4617 (uri (git-reference
4618 (url "https://github.com/queryverse/TableShowUtils.jl")
4619 (commit commit)))
4620 (file-name (git-file-name name version))
4621 (sha256
4622 (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5"))))
4623 (build-system julia-build-system)
4624 (propagated-inputs
4625 `(("julia-datavalues" ,julia-datavalues)
4626 ("julia-json" ,julia-json)))
4627 (home-page "https://github.com/queryverse/TableShowUtils.jl")
4628 (synopsis "Implement show for TableTraits.jl types")
4629 (description "This package provides some common helper functions that make
4630 it easier to implement various @code{Base.show} functions for types that
4631 participate in the @code{TableTraits.jl} ecosystem.")
4632 (license license:expat))))
4633
4634 (define-public julia-tabletraits
4635 (package
4636 (name "julia-tabletraits")
4637 (version "1.0.1")
4638 (source
4639 (origin
4640 (method git-fetch)
4641 (uri (git-reference
4642 (url "https://github.com/queryverse/TableTraits.jl")
4643 (commit (string-append "v" version))))
4644 (file-name (git-file-name name version))
4645 (sha256
4646 (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"))))
4647 (build-system julia-build-system)
4648 (propagated-inputs
4649 `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)))
4650 (home-page "https://github.com/queryverse/TableTraits.jl")
4651 (synopsis "Traits for Julia tables")
4652 (description "TableTraits defines a generic interface for tabular data.")
4653 (license license:expat)))
4654
4655 (define-public julia-tensorcore
4656 (package
4657 (name "julia-tensorcore")
4658 (version "0.1.1")
4659 (source
4660 (origin
4661 (method git-fetch)
4662 (uri (git-reference
4663 (url "https://github.com/JuliaMath/TensorCore.jl")
4664 (commit (string-append "v" version))))
4665 (file-name (git-file-name name version))
4666 (sha256
4667 (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy"))))
4668 (build-system julia-build-system)
4669 (home-page "https://github.com/JuliaMath/TensorCore.jl")
4670 (synopsis "Tensor-algebra definitions")
4671 (description "This package is intended as a lightweight foundation for
4672 tensor operations across the Julia ecosystem. Currently it exports three
4673 operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor,
4674 product preserves all dimensions}, and @acronym{boxdot, contracts neighboring
4675 dimensions}.")
4676 (license license:expat)))
4677
4678 (define-public julia-testimages
4679 (package
4680 (name "julia-testimages")
4681 (version "1.5.0")
4682 (source
4683 (origin
4684 (method git-fetch)
4685 (uri (git-reference
4686 (url "https://github.com/JuliaImages/TestImages.jl")
4687 (commit (string-append "v" version))))
4688 (file-name (git-file-name name version))
4689 (sha256
4690 (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
4691 (build-system julia-build-system)
4692 (arguments
4693 `(#:tests? #f)) ; cycle with ImageMagick.jl
4694 (propagated-inputs
4695 `(("julia-axisarrays" ,julia-axisarrays)
4696 ("julia-colortypes" ,julia-colortypes)
4697 ("julia-fileio" ,julia-fileio)
4698 ("julia-offsetarrays" ,julia-offsetarrays)
4699 ("julia-stringdistances" ,julia-stringdistances)))
4700 ;(native-inputs
4701 ; `(("julia-colors" ,julia-colors)
4702 ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
4703 ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment)
4704 ; ("julia-imagemagick" ,julia-imagemagick)
4705 ; ("julia-ometiff" ,julia-ometiff)
4706 ; ("julia-referencetests" ,julia-referencetests)))
4707 (home-page "https://testimages.juliaimages.org/")
4708 (synopsis "Standard test images for Julia")
4709 (description "This package provides a convenient Julia interface for loading
4710 standard named test images and example images for the internal usage in
4711 @code{JuliaImages}. This can be used in conjunction with the @code{Images}
4712 package.")
4713 (license license:expat)))
4714
4715 (define-public julia-tracker
4716 (package
4717 (name "julia-tracker")
4718 (version "0.2.12")
4719 (source
4720 (origin
4721 (method git-fetch)
4722 (uri (git-reference
4723 (url "https://github.com/FluxML/Tracker.jl")
4724 (commit (string-append "v" version))))
4725 (file-name (git-file-name name version))
4726 (sha256
4727 (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j"))
4728 (patches (search-patches "julia-tracker-16-compat.patch"))))
4729 (build-system julia-build-system)
4730 (propagated-inputs
4731 `(("julia-adapt" ,julia-adapt)
4732 ("julia-diffrules" ,julia-diffrules)
4733 ("julia-forwarddiff" ,julia-forwarddiff)
4734 ("julia-macrotools" ,julia-macrotools)
4735 ("julia-nanmath" ,julia-nanmath)
4736 ("julia-nnlib" ,julia-nnlib)
4737 ("julia-requires" ,julia-requires)
4738 ("julia-specialfunctions" ,julia-specialfunctions)))
4739 (native-inputs
4740 `(("julia-pdmats" ,julia-pdmats)))
4741 (home-page "https://github.com/FluxML/Tracker.jl")
4742 (synopsis "Operator overloading reverse-mode automatic differentiator")
4743 (description "@code{Tracker.jl} previously provided @code{Flux.jl} with
4744 automatic differentiation for its machine learning platform.")
4745 (license license:expat)))
4746
4747 (define-public julia-transcodingstreams
4748 (package
4749 (name "julia-transcodingstreams")
4750 (version "0.9.6")
4751 (source
4752 (origin
4753 (method git-fetch)
4754 (uri (git-reference
4755 (url "https://github.com/JuliaIO/TranscodingStreams.jl")
4756 (commit (string-append "v" version))))
4757 (file-name (git-file-name name version))
4758 (sha256
4759 (base32 "1w3klii293caqiclfh28jggv7f53xclm9fr6xmw38brwrn1hjb48"))))
4760 (build-system julia-build-system)
4761 (arguments
4762 `(#:tests? #f)) ; Circular dependency with various codecs.
4763 (home-page "https://github.com/JuliaIO/TranscodingStreams.jl")
4764 (synopsis "Fast I/O transcoding data streams")
4765 (description "This package provides tools for transcoding data streams
4766 which are:
4767 @itemize
4768 @item fast: small overhead and specialized methods
4769 @item consistent: basic I/O operations work as expected
4770 @item generic: support any I/O objects like files, buffers, pipes, etc.
4771 @item extensible: easy definition for new codec to transcode data
4772 @end itemize")
4773 (license license:expat)))
4774
4775 (define-public julia-typedtables
4776 (package
4777 (name "julia-typedtables")
4778 (version "1.4.0")
4779 (source
4780 (origin
4781 (method git-fetch)
4782 (uri (git-reference
4783 (url "https://github.com/JuliaData/TypedTables.jl")
4784 (commit (string-append "v" version))))
4785 (file-name (git-file-name name version))
4786 (sha256
4787 (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i"))))
4788 (build-system julia-build-system)
4789 (propagated-inputs
4790 `(("julia-adapt" ,julia-adapt)
4791 ("julia-splitapplycombine" ,julia-splitapplycombine)
4792 ("julia-tables" ,julia-tables)))
4793 (home-page "https://github.com/JuliaData/TypedTables.jl")
4794 (synopsis "Column-based storage for data analysis in Julia")
4795 (description "@code{TypedTables.jl} provides two column-based storage
4796 containers: @code{Table} and @code{FlexTable}, both of which represent an array
4797 of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use
4798 and fast, and presents a very minimal new interface to learn.")
4799 (license license:expat)))
4800
4801 (define-public julia-unpack
4802 (package
4803 (name "julia-unpack")
4804 (version "1.0.2")
4805 (source
4806 (origin
4807 (method git-fetch)
4808 (uri (git-reference
4809 (url "https://github.com/mauro3/UnPack.jl")
4810 (commit (string-append "v" version))))
4811 (file-name (git-file-name name version))
4812 (sha256
4813 (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
4814 (build-system julia-build-system)
4815 (home-page "https://github.com/mauro3/UnPack.jl")
4816 (synopsis "Pack and Unpack macros for Julia")
4817 (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
4818 types, modules, and dictionaries.")
4819 (license license:expat)))
4820
4821 (define-public julia-uris
4822 (package
4823 (name "julia-uris")
4824 (version "1.3.0")
4825 (source
4826 (origin
4827 (method git-fetch)
4828 (uri (git-reference
4829 (url "https://github.com/JuliaWeb/URIs.jl")
4830 (commit (string-append "v" version))))
4831 (file-name (git-file-name name version))
4832 (sha256
4833 (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
4834 (build-system julia-build-system)
4835 (arguments
4836 '(#:julia-package-name "URIs" ;required to run tests
4837 #:julia-package-uuid "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
4838 #:phases
4839 (modify-phases %standard-phases
4840 (add-before 'check 'change-dir
4841 ;; Tests must be run from the testdir
4842 (lambda* (#:key source outputs #:allow-other-keys)
4843 (let ((out (assoc-ref outputs "out")))
4844 (chdir
4845 (string-append out "/share/julia/loadpath/URIs/test")))
4846 #t)))))
4847 ;; required for tests
4848 (inputs `(("julia-json" ,julia-json)))
4849 (home-page "https://github.com/JuliaWeb/URIs.jl")
4850 (synopsis "URI parsing in Julia")
4851 (description "@code{URIs.jl} is a Julia package that allows parsing and
4852 working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
4853 3986.")
4854 (license license:expat)))
4855
4856 (define-public julia-unitful
4857 (package
4858 (name "julia-unitful")
4859 (version "1.9.0")
4860 (source
4861 (origin
4862 (method git-fetch)
4863 (uri (git-reference
4864 (url "https://github.com/PainterQubits/Unitful.jl")
4865 (commit (string-append "v" version))))
4866 (file-name (git-file-name name version))
4867 (sha256
4868 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
4869 (build-system julia-build-system)
4870 (arguments
4871 `(#:parallel-tests? #f))
4872 (propagated-inputs
4873 `(("julia-constructionbase" ,julia-constructionbase)))
4874 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
4875 (synopsis "Physical units in Julia")
4876 (description "This package supports SI units and also many other unit
4877 system.")
4878 (license license:expat)))
4879
4880 (define-public julia-versionparsing
4881 (package
4882 (name "julia-versionparsing")
4883 (version "1.2.0")
4884 (source
4885 (origin
4886 (method git-fetch)
4887 (uri (git-reference
4888 (url "https://github.com/JuliaInterop/VersionParsing.jl")
4889 (commit (string-append "v" version))))
4890 (file-name (git-file-name name version))
4891 (sha256
4892 (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva"))))
4893 (build-system julia-build-system)
4894 (home-page "https://github.com/JuliaInterop/VersionParsing.jl")
4895 (synopsis "Flexible VersionNumber parsing in Julia")
4896 (description "The @code{VersionParsing} package implements flexible parsing
4897 of version-number strings into Julia's built-in @code{VersionNumber} type, via
4898 the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)}
4899 constructor, @code{vparse(string)} can handle version-number strings in a much
4900 wider range of formats than are encompassed by the semver standard. This is
4901 useful in order to support @code{VersionNumber} comparisons applied to
4902 \"foreign\" version numbers from external packages.")
4903 (license license:expat)))
4904
4905 (define-public julia-weakrefstrings
4906 (package
4907 (name "julia-weakrefstrings")
4908 (version "1.1.0")
4909 (source
4910 (origin
4911 (method git-fetch)
4912 (uri (git-reference
4913 (url "https://github.com/JuliaData/WeakRefStrings.jl")
4914 (commit (string-append "v" version))))
4915 (file-name (git-file-name name version))
4916 (sha256
4917 (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219"))))
4918 (build-system julia-build-system)
4919 (propagated-inputs
4920 `(("julia-dataapi" ,julia-dataapi)
4921 ("julia-parsers" ,julia-parsers)))
4922 (home-page "https://github.com/JuliaData/WeakRefStrings.jl")
4923 (synopsis "Efficient string representation and transfer in Julia")
4924 (description "This package provides a minimal String type for Julia that
4925 allows for efficient string representation and transfer")
4926 (license license:expat)))
4927
4928 (define-public julia-woodburymatrices
4929 (package
4930 (name "julia-woodburymatrices")
4931 (version "0.5.3")
4932 (source
4933 (origin
4934 (method git-fetch)
4935 (uri (git-reference
4936 (url "https://github.com/timholy/WoodburyMatrices.jl")
4937 (commit (string-append "v" version))))
4938 (file-name (git-file-name name version))
4939 (sha256
4940 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
4941 (build-system julia-build-system)
4942 (home-page "https://github.com/timholy/WoodburyMatrices.jl")
4943 (synopsis "Support for the Woodbury matrix identity for Julia")
4944 (description "This package provides support for the Woodbury matrix identity
4945 for the Julia programming language. This is a generalization of the
4946 Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious
4947 for floating-point roundoff errors, so be prepared for a certain amount of
4948 inaccuracy in the result.")
4949 (license license:expat)))
4950
4951 (define-public julia-zipfile
4952 (package
4953 (name "julia-zipfile")
4954 (version "0.9.3")
4955 (source
4956 (origin
4957 (method git-fetch)
4958 (uri (git-reference
4959 (url "https://github.com/fhs/ZipFile.jl")
4960 (commit (string-append "v" version))))
4961 (file-name (git-file-name name version))
4962 (sha256
4963 (base32
4964 "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
4965 (build-system julia-build-system)
4966 (propagated-inputs
4967 `(("julia-zlib-jll" ,julia-zlib-jll)))
4968 (home-page "https://github.com/fhs/ZipFile.jl")
4969 (synopsis "Read/Write ZIP archives in Julia")
4970 (description "This module provides support for reading and writing ZIP
4971 archives in Julia.")
4972 (license license:expat)))
4973
4974 (define-public julia-zygoterules
4975 (package
4976 (name "julia-zygoterules")
4977 (version "0.2.1")
4978 (source
4979 (origin
4980 (method git-fetch)
4981 (uri (git-reference
4982 (url "https://github.com/FluxML/ZygoteRules.jl")
4983 (commit (string-append "v" version))))
4984 (file-name (git-file-name name version))
4985 (sha256
4986 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
4987 (build-system julia-build-system)
4988 (propagated-inputs
4989 `(("julia-macrotools" ,julia-macrotools)))
4990 (home-page "https://github.com/FluxML/ZygoteRules.jl")
4991 (synopsis "Add minimal custom gradients to Zygote")
4992 (description "Minimal package which enables to add custom gradients to
4993 Zygote, without depending on Zygote itself.")
4994 (license license:expat)))
4995
4996 (define-public julia-zygote
4997 (package
4998 (name "julia-zygote")
4999 (version "0.6.17")
5000 (source
5001 (origin
5002 (method git-fetch)
5003 (uri (git-reference
5004 (url "https://github.com/FluxML/Zygote.jl")
5005 (commit (string-append "v" version))))
5006 (file-name (git-file-name name version))
5007 (sha256
5008 (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
5009 (build-system julia-build-system)
5010 (arguments
5011 `(#:tests? #f)) ;require CUDA, not packaged yet
5012 (propagated-inputs
5013 `(("julia-abstractffs" ,julia-abstractffts)
5014 ("julia-chainrules" ,julia-chainrules)
5015 ("julia-diffrules" ,julia-diffrules)
5016 ("julia-fillarrays" ,julia-fillarrays)
5017 ("julia-forwarddiff" ,julia-forwarddiff)
5018 ("julia-irtools" ,julia-irtools)
5019 ("julia-macrotools" ,julia-macrotools)
5020 ("julia-nanmath" ,julia-nanmath)
5021 ("julia-requires" ,julia-requires)
5022 ("julia-specialfunctions" ,julia-specialfunctions)
5023 ("julia-zygote-rules" ,julia-zygoterules)))
5024 (home-page "https://fluxml.ai/Zygote.jl")
5025 (synopsis "Automatic differentiation in Julia")
5026 (description "Zygote provides source-to-source automatic
5027 differentiation (AD) in Julia, and is the next-generation AD system for the
5028 Flux differentiable programming framework.")
5029 (license license:expat)))