gnu/packages/orange.scm

   1 ;;; GNU Guix --- Functional package management for GNU
   2 ;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net>
   3 ;;;
   4 ;;; This file is part of GNU Guix.
   5 ;;;
   6 ;;; GNU Guix is free software; you can redistribute it and/or modify it
   7 ;;; under the terms of the GNU General Public License as published by
   8 ;;; the Free Software Foundation; either version 3 of the License, or (at
   9 ;;; your option) any later version.
  10 ;;;
  11 ;;; GNU Guix is distributed in the hope that it will be useful, but
  12 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
  13 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  14 ;;; GNU General Public License for more details.
  15 ;;;
  16 ;;; You should have received a copy of the GNU General Public License
  17 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
  18
  19 (define-module (gnu packages orange)
  20   #:use-module ((guix licenses) #:prefix license:)
  21   #:use-module (guix packages)
  22   #:use-module (guix download)
  23   #:use-module (guix build-system python)
  24   #:use-module (gnu packages)
  25   #:use-module (gnu packages freedesktop)
  26   #:use-module (gnu packages graph)
  27   #:use-module (gnu packages machine-learning)
  28   #:use-module (gnu packages python-crypto)
  29   #:use-module (gnu packages python-science)
  30   #:use-module (gnu packages python-web)
  31   #:use-module (gnu packages python-xyz)
  32   #:use-module (gnu packages qt))
  33
  34 (define-public python-orange-canvas-core
  35   (package
  36     (name "python-orange-canvas-core")
  37     (version "0.1.24")
  38     (source
  39      (origin
  40        (method url-fetch)
  41        (uri (pypi-uri "orange-canvas-core" version))
  42        (sha256
  43         (base32 "0m3dszdkc5bc80ahcvrqxz8jahs33js9cx1mc6rc9ihysq2ddnfz"))))
  44     (build-system python-build-system)
  45     (arguments
  46      `(#:phases
  47        (modify-phases %standard-phases
  48          (add-before 'check 'check-setup
  49            (lambda _
  50              ;; This test fails with: RuntimeError: Event loop is closed.
  51              (substitute* "orangecanvas/application/tests/test_mainwindow.py"
  52                (("test_help_requests") "_test_help_requests"))
  53              (setenv "HOME" "/tmp")
  54              (setenv "QT_QPA_PLATFORM" "offscreen"))))))
  55     (propagated-inputs
  56      (list python-anyqt
  57            python-cachecontrol
  58            python-commonmark
  59            python-dictdiffer
  60            python-docutils
  61            python-qasync
  62            python-requests))
  63     (home-page "https://github.com/biolab/orange-canvas-core")
  64     (synopsis "Core component of Orange Canvas")
  65     (description
  66      "Orange Canvas Core is a framework for building graphical user interfaces
  67 for editing workflows.  It is a component used to build the Orange Canvas
  68 data-mining application.")
  69     (license license:gpl3)))
  70
  71 (define-public python-orange-widget-base
  72   (package
  73     (name "python-orange-widget-base")
  74     (version "4.16.1")
  75     (source
  76      (origin
  77        (method url-fetch)
  78        (uri (pypi-uri "orange-widget-base" version))
  79        (sha256
  80         (base32 "0a0sijsvzijj71sxq8ckpgz59z1cq9sxn4fya3z23ibdzjzwrsi7"))))
  81     (build-system python-build-system)
  82     (arguments
  83      `(;; unittest fails to load one test, all other tests are passing:
  84        ;; AttributeError: module 'orangewidget' has no attribute 'version'.
  85        #:tests? #f
  86        #:phases
  87        (modify-phases %standard-phases
  88          (add-before 'check 'check-setup
  89            (lambda _
  90              (setenv "HOME" "/tmp")
  91              (setenv "QT_QPA_PLATFORM" "offscreen"))))))
  92     (propagated-inputs
  93      (list python-anyqt python-matplotlib python-orange-canvas-core
  94            python-pyqtgraph python-typing-extensions))
  95     (home-page "https://github.com/biolab/orange-widget-base")
  96     (synopsis "Base Widget for Orange Canvas")
  97     (description
  98      "Orange Widget Base provides a base widget component for a interactive
  99 GUI based workflow.  It is primarily used in the Orange framework.")
 100     (license license:gpl3+)))
 101
 102 (define-public orange
 103   (package
 104     (name "orange")
 105     (version "3.32.0")
 106     (source
 107      (origin
 108        (method url-fetch)
 109        (uri (pypi-uri "Orange3" version))
 110        (sha256
 111         (base32 "0pxjwisc209cdgpqlqazc2vlmr0iqz8ry862w7jx95zic54d9p5l"))))
 112     (build-system python-build-system)
 113     (arguments
 114      `(#:phases
 115        (modify-phases %standard-phases
 116          (add-after 'unpack 'preparations
 117            (lambda _
 118              ;; Delete test that opens an outgoing connection.
 119              (delete-file "Orange/tests/test_url_reader.py")
 120              ;; This is a binary data file and it breaks runpath validation.
 121              (delete-file "Orange/tests/datasets/binary-blob.tab")
 122              ;; Skip the test which uses that binary file.
 123              (substitute* "Orange/tests/test_txt_reader.py"
 124                (("test_read_nonutf8_encoding") "_test_read_nonutf8_encoding"))
 125              ;; We use a correct version of PyQtWebEngine, but the build scripts
 126              ;; consider it incorrect anyways. Remove the constraint entirely to
 127              ;; work around this bug.
 128              (substitute* "requirements-pyqt.txt" (("PyQtWebEngine>=5.12") ""))))
 129          (add-before 'check 'pre-check
 130            ;; Tests need a writable home.
 131            (lambda _
 132              (setenv "HOME" "/tmp")
 133              (setenv "QT_QPA_PLATFORM" "offscreen")))
 134          (add-after 'install 'wrap-executable
 135            ;; Ensure that icons are found at runtime.
 136            (lambda* (#:key inputs outputs #:allow-other-keys)
 137              (let ((out (assoc-ref outputs "out")))
 138                (wrap-program (string-append out "/bin/orange-canvas")
 139                  `("QT_PLUGIN_PATH" prefix
 140                    ,(list (string-append (assoc-ref inputs "qtsvg")
 141                                          "/lib/qt5/plugins/"))))))))))
 142     (native-inputs
 143      (list python-cython))
 144     (inputs
 145      (list python-anyqt
 146            python-baycomp
 147            python-bottleneck
 148            python-chardet
 149            python-httpx
 150            python-joblib
 151            python-keyring
 152            python-keyrings.alt
 153            python-louvain
 154            python-matplotlib
 155            python-networkx
 156            python-numpy
 157            python-openpyxl
 158            python-opentsne
 159            python-orange-canvas-core
 160            python-orange-widget-base
 161            python-pandas
 162            python-pygments
 163            python-pyqt-without-qtwebkit
 164            python-pyqtgraph
 165            python-pyqtwebengine
 166            python-pyyaml
 167            python-qtconsole
 168            python-requests
 169            python-scikit-learn
 170            python-scipy
 171            python-serverfiles
 172            python-xlrd
 173            python-xlsxwriter
 174            qtbase-5
 175            qtsvg-5
 176            xdg-utils))
 177     (home-page "https://orangedatamining.com/")
 178     (synopsis "Component-based data mining framework")
 179     (description
 180      "Orange is a component-based, graphical framework for machine learning,
 181 data analysis, data mining and data visualization.")
 182     (license license:gpl3+)))
 183
 184 (define-public python-serverfiles
 185   (package
 186     (name "python-serverfiles")
 187     (version "0.3.1")
 188     (source
 189      (origin
 190        (method url-fetch)
 191        (uri (pypi-uri "serverfiles" version))
 192        (sha256
 193         (base32 "1qgbzgnaxj4wsp2rdas53qxsh0j7xpibq25w6lviwyaqwwrgq42y"))))
 194     (build-system python-build-system)
 195     (propagated-inputs
 196      (list python-requests))
 197     (home-page "https://github.com/biolab/serverfiles")
 198     (synopsis "Utility to access files on a HTTP server and store them locally")
 199     (description
 200      "This package provides an utility that accesses files on a HTTP server
 201 and stores them locally for reuse.  It is primarily used by the Orange
 202 framework.")
 203     (license license:gpl3+)))