1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
3 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
4 ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
5 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
7 ;;; This file is part of GNU Guix.
9 ;;; GNU Guix is free software; you can redistribute it and/or modify it
10 ;;; under the terms of the GNU General Public License as published by
11 ;;; the Free Software Foundation; either version 3 of the License, or (at
12 ;;; your option) any later version.
14 ;;; GNU Guix is distributed in the hope that it will be useful, but
15 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
16 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 ;;; GNU General Public License for more details.
19 ;;; You should have received a copy of the GNU General Public License
20 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
22 (define-module (gnu packages julia-xyz)
23 #:use-module ((guix licenses) #:prefix license:)
24 #:use-module (gnu packages)
25 #:use-module (guix utils)
26 #:use-module (guix packages)
27 #:use-module (guix git-download)
28 #:use-module (guix build-system julia)
29 #:use-module (gnu packages gcc)
30 #:use-module (gnu packages julia-jll)
31 #:use-module (gnu packages python)
32 #:use-module (gnu packages python-xyz)
33 #:use-module (gnu packages version-control))
35 (define-public julia-abstractffts
37 (name "julia-abstractffts")
43 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
44 (commit (string-append "v" version))))
45 (file-name (git-file-name name version))
47 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
48 (build-system julia-build-system)
49 (inputs ;required for tests
50 `(("julia-unitful" ,julia-unitful)))
51 (home-page "https://github.com/JuliaGPU/Adapt.jl")
52 (synopsis "General framework for fast Fourier transforms (FFTs)")
53 (description "This package allows multiple FFT packages to co-exist with
54 the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
55 mainly not intended to be used directly. Instead, developers of packages that
56 implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
57 types/functions defined in AbstractFFTs.")
58 (license license:expat)))
60 (define-public julia-abstracttrees
62 (name "julia-abstracttrees")
68 (url "https://github.com/JuliaCollections/AbstractTrees.jl")
69 (commit (string-append "v" version))))
70 (file-name (git-file-name name version))
72 (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
73 (build-system julia-build-system)
74 (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
75 (synopsis "Abstract Julia interfaces for working with trees")
76 (description "This Julia package provides several utilities for working
77 with tree-like data structures. Most importantly, it defines the
78 @code{children} method that any package that contains such a data structure
79 may import and extend in order to take advantage of any generic tree algorithm
81 (license license:expat)))
83 (define-public julia-adapt
91 (url "https://github.com/JuliaGPU/Adapt.jl")
92 (commit (string-append "v" version))))
93 (file-name (git-file-name name version))
95 (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7"))))
96 (build-system julia-build-system)
97 (home-page "https://github.com/JuliaGPU/Adapt.jl")
98 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
99 (description "This Julia package provides the @code{adapt(T, x)} function
100 acts like @code{convert(T, x)}, but without the restriction of returning a
101 @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
102 be GPU compatible without throwing away the wrapper.")
103 (license license:expat)))
105 (define-public julia-ansicoloredprinters
107 (name "julia-ansicoloredprinters")
113 (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
114 (commit (string-append "v" version))))
115 (file-name (git-file-name name version))
117 (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
118 (build-system julia-build-system)
119 (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
120 (synopsis "ANSI escape code translator")
121 (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
122 ANSI escape codes to another format.")
123 (license license:expat)))
125 (define-public julia-aqua
133 (url "https://github.com/JuliaTesting/Aqua.jl")
134 (commit (string-append "v" version))))
135 (file-name (git-file-name name version))
137 (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk"))))
138 (build-system julia-build-system)
139 (home-page "https://github.com/JuliaTesting/Aqua.jl")
140 (synopsis "Automated quality assurance for Julia packages")
141 (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
142 provides functions to run a few automatable checks for Julia packages.")
143 (license license:expat)))
145 (define-public julia-arrayinterface
147 (name "julia-arrayinterface")
153 (url "https://github.com/JuliaArrays/ArrayInterface.jl")
154 (commit (string-append "v" version))))
155 (file-name (git-file-name name version))
157 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33"))))
158 (build-system julia-build-system)
160 `(("julia-ifelse" ,julia-ifelse)
161 ("julia-requires" ,julia-requires)
162 ("julia-static" ,julia-static)))
164 `(("julia-aqua" ,julia-aqua)
165 ("julia-bandedmatrices" ,julia-bandedmatrices)
166 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
167 ("julia-ifelse" ,julia-ifelse)
168 ("julia-offsetarrays" ,julia-offsetarrays)
169 ("julia-staticarrays" ,julia-staticarrays)))
170 (home-page "https://github.com/JuliaArrays/ArrayInterface.jl")
171 (synopsis "Base array interface primitives")
172 (description "The purpose of this library is to solidify extensions to the
173 current @code{AbstractArray} interface, which are put to use in package
174 ecosystems like @code{DifferentialEquations.jl}. Since these libraries are
175 live, this package will serve as a staging ground for ideas before they are
176 merged into Base Julia. For this reason, no functionality is exported so that
177 if such functions are added and exported in a future Base Julia, there will be
178 no issues with the upgrade.")
179 (license license:expat)))
181 (define-public julia-arraylayouts
183 (name "julia-arraylayouts")
189 (url "https://github.com/JuliaMatrices/ArrayLayouts.jl")
190 (commit (string-append "v" version))))
191 (file-name (git-file-name name version))
193 (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg"))))
194 (build-system julia-build-system)
196 `(("julia-fillarrays" ,julia-fillarrays)))
197 (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl")
198 (synopsis "Array layouts and general fast linear algebra")
199 (description "This package implements a trait-based framework for describing
200 array layouts such as column major, row major, etc. that can be dispatched to
201 appropriate BLAS or optimised Julia linear algebra routines. This supports a
202 much wider class of matrix types than Julia's in-built @code{StridedArray}.")
203 (license license:expat)))
205 (define-public julia-axisalgorithms
207 (name "julia-axisalgorithms")
213 (url "https://github.com/timholy/AxisAlgorithms.jl")
214 (commit (string-append "v" version))))
215 (file-name (git-file-name name version))
217 (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk"))))
218 (build-system julia-build-system)
220 `(("julia-woodburymatrices" ,julia-woodburymatrices)))
221 (home-page "https://github.com/timholy/AxisAlgorithms.jl")
222 (synopsis "Filtering and linear algebra routines for multidimensional arrays")
223 (description "@code{AxisAlgorithms} is a collection of filtering and linear
224 algebra algorithms for multidimensional arrays. For algorithms that would
225 typically apply along the columns of a matrix, you can instead pick an arbitrary
227 (license license:expat)))
229 (define-public julia-axisarrays
231 (name "julia-axisarrays")
237 (url "https://github.com/JuliaArrays/AxisArrays.jl")
238 (commit (string-append "v" version))))
239 (file-name (git-file-name name version))
241 (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk"))))
242 (build-system julia-build-system)
244 `(("julia-rangearrays" ,julia-rangearrays)
245 ("julia-intervalsets" ,julia-intervalsets)
246 ("julia-itertools" ,julia-itertools)))
248 `(("julia-offsetarrays" ,julia-offsetarrays)
249 ("julia-unitful" ,julia-unitful)))
250 (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/")
251 (synopsis "Arrays where each dimension can have a named axis with values")
252 (description "This package for the Julia language provides an array type
253 (the AxisArray) that knows about its dimension names and axis values. This
254 allows for indexing by name without incurring any runtime overhead. This
255 permits one to implement algorithms that are oblivious to the storage order of
256 the underlying arrays. AxisArrays can also be indexed by the values along their
257 axes, allowing column names or interval selections.")
258 (license license:expat)))
260 (define-public julia-bandedmatrices
262 (name "julia-bandedmatrices")
268 (url "https://github.com/JuliaMatrices/BandedMatrices.jl")
269 (commit (string-append "v" version))))
270 (file-name (git-file-name name version))
272 (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism"))))
273 (build-system julia-build-system)
275 `(("julia-arraylayouts" ,julia-arraylayouts)
276 ("julia-fillarrays" ,julia-fillarrays)))
278 `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra)))
279 (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl")
280 (synopsis "Julia package for representing banded matrices")
281 (description "This package supports representing banded matrices by only
282 the entries on the bands.")
283 (license license:expat)))
285 (define-public julia-benchmarktools
287 (name "julia-benchmarktools")
293 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
294 (commit (string-append "v" version))))
295 (file-name (git-file-name name version))
297 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
298 (build-system julia-build-system)
299 (propagated-inputs `(("julia-json" ,julia-json)))
300 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
301 (synopsis "Benchmarking framework for the Julia language")
302 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
303 code easy by supplying a framework for writing and running groups of
304 benchmarks as well as comparing benchmark results.")
305 (license license:expat)))
307 (define-public julia-blockarrays
309 (name "julia-blockarrays")
315 (url "https://github.com/JuliaArrays/BlockArrays.jl")
316 (commit (string-append "v" version))))
317 (file-name (git-file-name name version))
319 (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1"))))
320 (build-system julia-build-system)
322 `(("julia-arraylayouts" ,julia-arraylayouts)
323 ("julia-fillarrays" ,julia-fillarrays)))
325 `(("julia-lazyarrays" ,julia-lazyarrays)
326 ("julia-offsetarrays" ,julia-offsetarrays)
327 ("julia-staticarrays" ,julia-staticarrays)))
328 (home-page "https://github.com/JuliaArrays/BlockArrays.jl")
329 (synopsis "BlockArrays for Julia")
330 (description "A block array is a partition of an array into blocks or
331 subarrays. This package has two purposes. Firstly, it defines an interface for
332 an @code{AbstractBlockArray} block arrays that can be shared among types
333 representing different types of block arrays. The advantage to this is that it
334 provides a consistent API for block arrays.
335 Secondly, it also implements two different type of block arrays that follow the
336 @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each
337 block contiguously while the type @code{PseudoBlockArray} stores the full matrix
338 contiguously. This means that @code{BlockArray} supports fast non copying
339 extraction and insertion of blocks while @code{PseudoBlockArray} supports fast
340 access to the full matrix to use in in for example a linear solver.")
341 (license license:expat)))
343 (define-public julia-blockbandedmatrices
345 (name "julia-blockbandedmatrices")
351 (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
352 (commit (string-append "v" version))))
353 (file-name (git-file-name name version))
355 (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9"))))
356 (build-system julia-build-system)
358 `(("julia-arraylayouts" ,julia-arraylayouts)
359 ("julia-bandedmatrices" ,julia-bandedmatrices)
360 ("julia-blockarrays" ,julia-blockarrays)
361 ("julia-fillarrays" ,julia-fillarrays)
362 ("julia-matrixfactorizations" ,julia-matrixfactorizations)))
363 (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
364 (synopsis "Block-banded matrices and banded-block-banded matrices")
365 (description "This package supports representing block-banded and
366 banded-block-banded matrices by only storing the entries in the non-zero bands.
367 A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
368 @code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
369 (license license:expat)))
371 (define-public julia-bufferedstreams
373 (name "julia-bufferedstreams")
379 (url "https://github.com/BioJulia/BufferedStreams.jl")
380 (commit (string-append "v" version))))
381 (file-name (git-file-name name version))
383 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
384 (build-system julia-build-system)
385 ;; The package is old and tests are using undefined functions. They also
387 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
390 #:julia-package-name "BufferedStreams"))
391 (propagated-inputs `(("julia-compat" ,julia-compat)))
392 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
393 (synopsis "Fast composable IO streams")
394 (description "@code{BufferedStreams.jl} provides buffering for IO
395 operations. It can wrap any @code{IO} type automatically making incremental
396 reading and writing faster.")
397 (license license:expat)))
399 (define-public julia-calculus
401 (name "julia-calculus")
407 (url "https://github.com/JuliaMath/Calculus.jl")
408 (commit (string-append "v" version))))
409 (file-name (git-file-name name version))
411 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
412 (build-system julia-build-system)
413 (home-page "https://github.com/JuliaMath/Calculus.jl")
414 (synopsis "Common utilities for automatic differentiation")
415 (description "This package provides tools for working with the basic
416 calculus operations of differentiation and integration. The @code{Calculus}
417 package produces approximate derivatives by several forms of finite
418 differencing or produces exact derivative using symbolic differentiation. It
419 can also be used to compute definite integrals by different numerical
421 (license license:expat)))
423 (define-public julia-categoricalarrays
425 (name "julia-categoricalarrays")
431 (url "https://github.com/JuliaData/CategoricalArrays.jl")
432 (commit (string-append "v" version))))
433 (file-name (git-file-name name version))
435 (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x"))))
436 (build-system julia-build-system)
438 `(("julia-pooledarrays" ,julia-pooledarrays)))
440 `(("julia-dataapi" ,julia-dataapi)
441 ("julia-json" ,julia-json)
442 ("julia-json3" ,julia-json3)
443 ("julia-missings" ,julia-missings)
444 ("julia-recipesbase" ,julia-recipesbase)
445 ("julia-structtypes" ,julia-structtypes)))
446 (home-page "https://github.com/JuliaData/CategoricalArrays.jl")
447 (synopsis "Arrays for working with categorical data")
448 (description "This package provides tools for working with categorical
449 variables, both with unordered (nominal variables) and ordered categories
450 (ordinal variables), optionally with missing values.")
451 (license license:expat)))
453 (define-public julia-chainrules
455 (name "julia-chainrules")
461 (url "https://github.com/JuliaDiff/ChainRules.jl")
462 (commit (string-append "v" version))))
463 (file-name (git-file-name name version))
465 (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70"))))
466 (build-system julia-build-system)
467 (inputs ;required for test
468 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
469 ("julia-finitedifferences" ,julia-finitedifferences)
470 ("julia-nanmath" ,julia-nanmath)
471 ("julia-specialfunctions" ,julia-specialfunctions)))
473 `(("julia-chainrulescore" ,julia-chainrulescore)
474 ("julia-compat" ,julia-compat)
475 ("julia-reexport" ,julia-reexport)
476 ("julia-requires" ,julia-requires)))
477 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
478 (synopsis "Common utilities for automatic differentiation")
479 (description "The is package provides a variety of common utilities that
480 can be used by downstream automatic differentiation (AD) tools to define and
481 execute forward-, reverse-, and mixed-mode primitives.")
482 (license license:expat)))
484 (define-public julia-chainrulescore
486 (name "julia-chainrulescore")
492 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
493 (commit (string-append "v" version))))
494 (file-name (git-file-name name version))
496 (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb"))))
497 (build-system julia-build-system)
498 (inputs ;required for tests
499 `(("julia-benchmarktools" ,julia-benchmarktools)
500 ("julia-staticarrays" ,julia-staticarrays)))
502 `(("julia-compat" ,julia-compat)))
503 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
504 (synopsis "Common utilities used by downstream automatic differentiation tools")
505 (description "The package provides a light-weight dependency for defining
506 sensitivities for functions without the need to depend on ChainRules itself.")
507 (license license:expat)))
509 (define-public julia-chainrulestestutils
511 (name "julia-chainrulestestutils")
517 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
518 (commit (string-append "v" version))))
519 (file-name (git-file-name name version))
521 (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9"))))
522 (build-system julia-build-system)
524 `(("julia-chainrulescore" ,julia-chainrulescore)
525 ("julia-compat" ,julia-compat)
526 ("julia-finitedifference" ,julia-finitedifferences)))
527 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
528 (synopsis "Common utilities used by downstream automatic differentiation tools")
529 (description "This package is designed to help in testing
530 @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
531 entry points are @code{ChainRulesTestUtils.frule_test},
532 @code{ChainRulesTestUtils.rrule_test}, and
533 @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
534 rules against numerical differentiation (using @code{FiniteDifferences.jl}).
536 @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
537 can be a test-only dependency, allowing it to have potentially heavy
538 dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
539 (license license:expat)))
541 (define-public julia-colors
543 (name "julia-colors")
549 (url "https://github.com/JuliaGraphics/Colors.jl")
550 (commit (string-append "v" version))))
551 (file-name (git-file-name name version))
553 (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
554 (build-system julia-build-system)
556 `(("julia-colortypes" ,julia-colortypes)
557 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
558 ("julia-reexport" ,julia-reexport)))
559 (home-page "https://github.com/JuliaGraphics/Colors.jl")
560 (synopsis "Tools for dealing with color")
561 (description "This package provides a wide array of functions for dealing
562 with color. This includes conversion between colorspaces, measuring distance
563 between colors, simulating color blindness, parsing colors, and generating
564 color scales for graphics.")
565 (license license:expat)))
567 (define-public julia-colorschemes
569 (name "julia-colorschemes")
575 (url "https://github.com/JuliaGraphics/ColorSchemes.jl")
576 (commit (string-append "v" version))))
577 (file-name (git-file-name name version))
579 (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq"))))
580 (build-system julia-build-system)
582 `(("julia-colors" ,julia-colors)
583 ("julia-colortypes" ,julia-colortypes)
584 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
585 ("julia-staticarrays" ,julia-staticarrays)))
586 (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl")
587 (synopsis "Colorschemes, colormaps, gradients, and palettes")
588 (description "This package provides a collection of colorschemes.")
589 (license license:expat)))
591 (define-public julia-colortypes
593 (name "julia-colortypes")
599 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
600 (commit (string-append "v" version))))
601 (file-name (git-file-name name version))
603 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
605 '(#:tests? #f)) ;require Documenter, not packaged yet
606 (build-system julia-build-system)
608 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
609 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
610 (synopsis "Basic color types and constructor")
611 (description "This minimalistic package serves as the foundation for
612 working with colors in Julia. It defines basic color types and their
613 constructors, and sets up traits and show methods to make them easier to work
615 (license license:expat)))
617 (define-public julia-colorvectorspace
619 (name "julia-colorvectorspace")
625 (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
626 (commit (string-append "v" version))))
627 (file-name (git-file-name name version))
629 (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi"))))
630 (build-system julia-build-system)
632 `(("julia-colortypes" ,julia-colortypes)
633 ("julia-specialfunctions" ,julia-specialfunctions)
634 ("julia-tensorcore" ,julia-tensorcore)))
636 `(("julia-colors" ,julia-colors)))
637 (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
638 (synopsis "Treat colors as n-vectors for the purposes of arithmetic")
639 (description "This package is an add-on to @code{ColorTypes.jl} and provides
640 fast mathematical operations for objects with types such as RGB and Gray.
641 Specifically, with this package both grayscale and RGB colors are treated as if
642 they are points in a normed vector space.")
643 (license license:expat)))
645 (define-public julia-combinatorics
647 (name "julia-combinatorics")
653 (url "https://github.com/JuliaMath/Combinatorics.jl")
654 (commit (string-append "v" version))))
655 (file-name (git-file-name name version))
657 (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
658 (build-system julia-build-system)
659 (home-page "https://github.com/JuliaMath/Combinatorics.jl")
660 (synopsis "Combinatorics library for Julia")
661 (description "This package provides a combinatorics library for Julia,
662 focusing mostly (as of now) on enumerative combinatorics and permutations.")
663 (license license:expat)))
665 (define-public julia-commonsubexpressions
667 (name "julia-commonsubexpressions")
673 (url "https://github.com/rdeits/CommonSubexpressions.jl")
674 (commit (string-append "v" version))))
675 (file-name (git-file-name name version))
677 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
678 (build-system julia-build-system)
680 `(("julia-macrotools" ,julia-macrotools)))
681 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
682 (synopsis "@code{@@cse} macro for Julia")
683 (description "This package provides the @code{@@cse} macro, which performs
684 common subexpression elimination.")
685 (license license:expat)))
687 (define-public julia-compat
689 (name "julia-compat")
695 (url "https://github.com/JuliaLang/Compat.jl")
696 (commit (string-append "v" version))))
697 (file-name (git-file-name name version))
699 (base32 "0qzvaqi5gqgc747fnajbvvf5vqbh6cwykwky00c7glvmvdsgk3z0"))))
700 (build-system julia-build-system)
701 (home-page "https://github.com/JuliaLang/Compat.jl")
702 (synopsis "Compatibility across Julia versions")
703 (description "The Compat package is designed to ease interoperability
704 between older and newer versions of the Julia language. The Compat package
705 provides a macro that lets you use the latest syntax in a backwards-compatible
707 (license license:expat)))
709 (define-public julia-constructionbase
711 (name "julia-constructionbase")
717 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
718 (commit (string-append "v" version))))
719 (file-name (git-file-name name version))
721 (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q"))))
722 (build-system julia-build-system)
723 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
724 (synopsis "Primitive functions for construction of objects")
725 (description "This very lightweight package provides primitive functions
726 for construction of objects.")
727 (license license:expat)))
729 (define-public julia-coordinatetransformations
731 (name "julia-coordinatetransformations")
737 (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
738 (commit (string-append "v" version))))
739 (file-name (git-file-name name version))
741 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d"))))
742 (build-system julia-build-system)
744 `(#:tests? #f)) ; Documenter.jl not packaged yet.
746 `(("julia-staticarrays" ,julia-staticarrays)))
748 ; `(("julia-documenter" ,julia-documenter)
749 ; ("julia-forwarddiff" ,julia-forwarddiff)
750 ; ("julia-unitful" ,julia-unitful)))
751 (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
752 (synopsis "Coordinate transformations in Julia")
753 (description "@code{CoordinateTransformations} is a Julia package to manage
754 simple or complex networks of coordinate system transformations.
755 Transformations can be easily applied, inverted, composed, and differentiated
756 (both with respect to the input coordinates and with respect to transformation
757 parameters such as rotation angle). Transformations are designed to be
758 light-weight and efficient enough for, e.g., real-time graphical applications,
759 while support for both explicit and automatic differentiation makes it easy to
760 perform optimization and therefore ideal for computer vision applications such
761 as SLAM (simultaneous localization and mapping).")
762 (license license:expat)))
764 (define-public julia-crayons
766 (name "julia-crayons")
772 (url "https://github.com/KristofferC/Crayons.jl")
773 (commit (string-append "v" version))))
774 (file-name (git-file-name name version))
776 (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
777 (build-system julia-build-system)
778 (home-page "https://github.com/KristofferC/Crayons.jl")
779 (synopsis "Colored and styled strings for terminals")
780 (description "Crayons is a package that makes it simple to write strings in
781 different colors and styles to terminals. It supports the 16 system colors,
782 both the 256 color and 24 bit true color extensions, and the different text
783 styles available to terminals.")
784 (license license:expat)))
786 (define-public julia-dataapi
788 (name "julia-dataapi")
794 (url "https://github.com/JuliaData/DataAPI.jl")
795 (commit (string-append "v" version))))
796 (file-name (git-file-name name version))
798 (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7"))))
799 (build-system julia-build-system)
800 (home-page "https://github.com/JuliaData/DataAPI.jl")
801 (synopsis "Data-focused namespace for packages to share functions")
802 (description "This package provides a namespace for data-related generic
803 function definitions to solve the optional dependency problem; packages wishing
804 to share and/or extend functions can avoid depending directly on each other by
805 moving the function definition to DataAPI.jl and each package taking a
807 (license license:expat)))
809 (define-public julia-datastructures
811 (name "julia-datastructures")
817 (url "https://github.com/JuliaCollections/DataStructures.jl")
818 (commit (string-append "v" version))))
819 (file-name (git-file-name name version))
821 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
823 `(("julia-compat" ,julia-compat)
824 ("julia-orderedcollections" ,julia-orderedcollections)))
825 (build-system julia-build-system)
826 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
827 (synopsis "Julia module providing different data structures")
828 (description "This package implements a variety of data structures,
829 including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
830 @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
831 (license license:expat)))
833 (define-public julia-datavalueinterfaces
835 (name "julia-datavalueinterfaces")
841 (url "https://github.com/queryverse/DataValueInterfaces.jl")
842 (commit (string-append "v" version))))
843 (file-name (git-file-name name version))
845 (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"))))
846 (build-system julia-build-system)
847 (home-page "https://github.com/queryverse/DataValueInterfaces.jl")
848 (synopsis "Interface for DataValues.jl")
849 (description "This package allows a few \"forward\" definitions for the
850 @code{DataValues.jl} package that other packages can utilize for integration
851 without having to take direct dependencies.")
852 (license license:expat)))
854 (define-public julia-datavalues
856 (name "julia-datavalues")
862 (url "https://github.com/queryverse/DataValues.jl")
863 (commit (string-append "v" version))))
864 (file-name (git-file-name name version))
866 (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
867 (build-system julia-build-system)
869 `(#:tests? #f ; Tests need upgrading with newer Julia version.
871 (modify-phases %standard-phases
872 (add-after 'unpack 'skip-known-failing-tests
874 ;; See upstream report:
875 ;; https://github.com/queryverse/DataValues.jl/issues/83
876 (substitute* "test/array/test_reduce.jl"
877 ((".*DataValue\\(mapreduce.*") "")
878 ((".*DataValue\\(method\\(f.*") ""))
881 `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces)))
882 (home-page "https://github.com/queryverse/DataValues.jl")
883 (synopsis "Missing values for Julia")
884 (description "This package provides the type @code{DataValue} that is used
885 to represent missing data.")
886 (license license:expat)))
888 (define-public julia-deepdiffs
890 (name "julia-deepdiffs")
896 (url "https://github.com/ssfrr/DeepDiffs.jl")
897 (commit (string-append "v" version))))
898 (file-name (git-file-name name version))
900 (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds"))))
901 (build-system julia-build-system)
902 (home-page "https://github.com/ssfrr/DeepDiffs.jl")
903 (synopsis "Compute and pretty-print diffs for data structures")
904 (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function,
905 which finds and displays differences (diffs) between Julia data structures. It
906 supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing
907 dictionaries where values associated with a particular key may change,
908 @code{deepdiff} will recurse into value to provide a more detailed diff.")
909 (license license:expat)))
911 (define-public julia-dictionaries
913 (name "julia-dictionaries")
919 (url "https://github.com/andyferris/Dictionaries.jl")
920 (commit (string-append "v" version))))
921 (file-name (git-file-name name version))
923 (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5"))))
924 (build-system julia-build-system)
926 `(("julia-indexing" ,julia-indexing)))
927 (home-page "https://github.com/andyferris/Dictionaries.jl")
928 (synopsis "Alternative interface for dictionaries in Julia")
929 (description "This package provides an alternative interface for
930 dictionaries in Julia, for improved productivity and performance.")
931 (license license:expat)))
933 (define-public julia-distances
935 (name "julia-distances")
941 (url "https://github.com/JuliaStats/Distances.jl")
942 (commit (string-append "v" version))))
943 (file-name (git-file-name name version))
945 (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
946 (build-system julia-build-system)
949 (modify-phases %standard-phases
950 (add-after 'unpack 'skip-flakey-tests
952 ;; Some combination of these tests fail nondeterministically
953 ;; each of the times this package is built.
954 (substitute* "test/test_dists.jl"
955 (("test dyz ≥") "test_nowarn dyz ≥")
956 (("test dist\\(y, x") "test_nowarn dist(y, x")
957 (("test dist\\(z, x") "test_nowarn dist(z, x")
958 (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
960 `(("julia-statsapi" ,julia-statsapi)))
962 `(("julia-offsetarrays" ,julia-offsetarrays)
963 ("julia-unitful" ,julia-unitful)))
964 (home-page "https://github.com/JuliaStats/Distances.jl")
965 (synopsis "Julia package for evaluating distances (metrics) between vectors")
966 (description "A Julia package for evaluating distances(metrics) between
967 vectors. This package also provides optimized functions to compute column-wise
968 and pairwise distances, which are often substantially faster than a
969 straightforward loop implementation.")
970 (license license:expat)))
972 (define-public julia-docstringextensions
974 (name "julia-docstringextensions")
980 (url "https://github.com/JuliaDocs/DocStringExtensions.jl")
981 (commit (string-append "v" version))))
982 (file-name (git-file-name name version))
984 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
985 (build-system julia-build-system)
987 `(#:tests? #f)) ; Tests try to read SSL certificates.
988 (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
989 (synopsis "Extensions for Julia's docsystem")
990 (description "This package provides a collection of useful extensions for
991 Julia's built-in docsystem. These are features that are not yet mature enough
992 to be considered for inclusion in Base, or that have sufficiently niche use
993 cases that including them with the default Julia installation is not seen as
994 valuable enough at this time.")
995 (license license:expat)))
997 ;; By removing all the javascript and css downloads any HTML documentation
998 ;; produced by this package will not be very useful.
999 (define-public julia-documenter
1001 (name "julia-documenter")
1007 (url "https://github.com/JuliaDocs/Documenter.jl")
1008 (commit (string-append "v" version))))
1009 (file-name (git-file-name name version))
1011 (base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam"))))
1012 (build-system julia-build-system)
1015 (modify-phases %standard-phases
1016 (add-after 'unpack 'patch-source
1017 (lambda* (#:key inputs #:allow-other-keys)
1018 (substitute* "src/Deps.jl"
1020 (string-append (assoc-ref inputs "python")
1021 "/bin/pip install")))
1023 (add-after 'unpack 'remove-javascript-downloads
1025 (substitute* "src/Writers/HTMLWriter.jl"
1026 (("cdnjs.cloudflare.com") "example.com"))
1027 ;; Removing the javascript downloads causes these tests fail.
1028 (substitute* "test/examples/tests.jl"
1029 ((".*Main\\.examples_html_doc.*") "")
1030 ((".*Main\\.examples_html_mathjax3_doc.*") ""))
1033 `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
1034 ("julia-docstringextensions" ,julia-docstringextensions)
1035 ("julia-iocapture" ,julia-iocapture)
1036 ("julia-json" ,julia-json)))
1038 `(("python" ,python-wrapper)))
1040 `(("git" ,git-minimal)
1041 ("julia-documentermarkdown" ,julia-documentermarkdown)
1042 ("julia-documentertools" ,julia-documentertools)))
1043 (home-page "https://juliadocs.github.io/Documenter.jl")
1044 (synopsis "Documentation generator for Julia")
1045 (description "This package provides a documentation generator for Julia.")
1046 (license license:expat)))
1048 (define julia-documenter-bootstrap
1050 (inherit julia-documenter)
1051 (name "julia-documenter-bootstrap")
1053 (substitute-keyword-arguments (package-arguments julia-documenter)
1055 `(modify-phases ,phases
1056 (delete 'patch-source)))
1057 ;; Not all dependencies available in bootstrap version.
1058 ((#:tests? _ #f) #f)))
1060 (native-inputs `())))
1062 (define-public julia-documentermarkdown
1064 (name "julia-documentermarkdown")
1070 (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1071 (commit (string-append "v" version))))
1072 (file-name (git-file-name name version))
1074 (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
1075 (build-system julia-build-system)
1077 ;; We don't want to propagate the bootstrap version.
1078 ;; Cycle with Documenter.jl in later versions.
1079 `(("julia-documenter" ,julia-documenter-bootstrap)))
1080 (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1081 (synopsis "Documenter's Markdown")
1082 (description "This package enables the Markdown / MkDocs backend of
1083 @code{Documenter.jl}.")
1084 (license license:expat)))
1086 (define-public julia-documentertools
1088 (name "julia-documentertools")
1094 (url "https://github.com/JuliaDocs/DocumenterTools.jl")
1095 (commit (string-append "v" version))))
1096 (file-name (git-file-name name version))
1098 (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
1099 (build-system julia-build-system)
1101 `(#:tests? #f)) ; Tests require network.
1103 ;; We don't want to propagate the bootstrap version.
1104 ;; Cycle with Documenter.jl in later versions.
1105 `(("julia-documenter" ,julia-documenter-bootstrap)))
1107 `(("julia-docstringextensions" ,julia-docstringextensions)
1108 ("julia-gumbo" ,julia-gumbo)
1109 ("julia-sass" ,julia-sass)))
1111 `(("julia-example" ,julia-example)))
1112 (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
1113 (synopsis "Extra tools for setting up Documenter.jl")
1114 (description "This package contains utilities for setting up documentation
1115 generation with @code{Documenter.jl}.")
1116 (license license:expat)))
1118 (define-public julia-diffresults
1120 (name "julia-diffresults")
1126 (url "https://github.com/JuliaDiff/DiffResults.jl")
1127 (commit (string-append "v" version))))
1128 (file-name (git-file-name name version))
1130 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
1132 `(("julia-staticarrays" ,julia-staticarrays)))
1133 (build-system julia-build-system)
1134 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
1135 (synopsis "In-place differentiation methods of primal values at multi-order")
1136 (description "This package provides the @code{DiffResult} type, which can
1137 be passed to in-place differentiation methods instead of an output buffer.")
1138 (license license:expat)))
1140 (define-public julia-diffrules
1142 (name "julia-diffrules")
1148 (url "https://github.com/JuliaDiff/DiffRules.jl")
1149 (commit (string-append "v" version))))
1150 (file-name (git-file-name name version))
1152 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
1154 `(("julia-nanmath" ,julia-nanmath)
1155 ("julia-specialfunctions" ,julia-specialfunctions)))
1156 (build-system julia-build-system)
1157 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
1158 (synopsis "Primitive differentiation rules")
1159 (description "This package provides primitive differentiation rules that
1160 can be composed via various formulations of the chain rule. Using
1161 @code{DiffRules}, new differentiation rules can defined, query whether or not
1162 a given rule exists, and symbolically apply rules to simple Julia expressions.")
1163 (license license:expat)))
1165 (define-public julia-difftests
1167 (name "julia-difftests")
1173 (url "https://github.com/JuliaDiff/DiffTests.jl")
1174 (commit (string-append "v" version))))
1175 (file-name (git-file-name name version))
1177 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
1178 (build-system julia-build-system)
1179 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
1180 (synopsis "Common test functions for differentiation tools")
1181 (description "This package contains a common suite of test functions for
1182 stressing the robustness of differentiation tools.")
1183 (license license:expat)))
1185 (define-public julia-dualnumbers
1187 (name "julia-dualnumbers")
1193 (url "https://github.com/JuliaDiff/DualNumbers.jl")
1194 (commit (string-append "v" version))))
1195 (file-name (git-file-name name version))
1197 (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
1198 (build-system julia-build-system)
1201 (modify-phases %standard-phases
1202 (add-after 'unpack 'adjust-test-suite
1204 (substitute* "test/runtests.jl"
1205 ;; Seems to not play nicely with SpecialFunctions
1206 ((".*isempty.*") "")))))))
1208 `(("julia-calculus" ,julia-calculus)
1209 ("julia-nanmath" ,julia-nanmath)
1210 ("julia-specialfunctions" ,julia-specialfunctions)))
1211 (home-page "https://github.com/JuliaDiff/DualNumbers.jl")
1212 (synopsis "Represent dual numbers and for perform dual algebra")
1213 (description "The @code{DualNumbers} Julia package defines the @code{Dual}
1214 type to represent dual numbers, and supports standard mathematical operations on
1215 them. Conversions and promotions are defined to allow performing operations on
1216 combinations of dual numbers with predefined Julia numeric types.")
1217 (license license:expat)))
1219 (define-public julia-ellipsisnotation
1221 (name "julia-ellipsisnotation")
1227 (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1228 (commit (string-append "v" version))))
1229 (file-name (git-file-name name version))
1231 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
1232 (build-system julia-build-system)
1235 (modify-phases %standard-phases
1236 (add-after 'unpack 'adjust-test-suite
1238 (substitute* "test/runtests.jl"
1239 ;; Seems to not play nicely with Julia-1.6.
1240 ((".*basic.jl.*") "")))))))
1242 `(("julia-arrayinterface" ,julia-arrayinterface)))
1243 (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1244 (synopsis "Elipsis notation implementation")
1245 (description "This implements the notation @code{..} for indexing arrays.
1246 It's similar to the Python @code{...} in that it means \"all of the columns
1247 before (or after)\".")
1248 (license license:expat)))
1250 (define-public julia-example
1251 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
1253 (name "julia-example")
1254 (version "0.5.4") ;tag not created upstream
1259 (url "https://github.com/JuliaLang/Example.jl")
1261 (file-name (git-file-name name version))
1263 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
1264 (build-system julia-build-system)
1265 (home-page "https://github.com/JuliaLang/Example.jl")
1266 (synopsis "Module providing examples")
1267 (description "This package provides various examples.")
1268 (license license:expat))))
1270 (define-public julia-exprtools
1272 (name "julia-exprtools")
1278 (url "https://github.com/invenia/ExprTools.jl")
1279 (commit (string-append "v" version))))
1280 (file-name (git-file-name name version))
1282 (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4"))))
1283 (build-system julia-build-system)
1284 (home-page "https://github.com/invenia/ExprTools.jl")
1285 (synopsis "Light-weight expression manipulation tools")
1286 (description "@code{ExprTools} provides tooling for working with Julia
1287 expressions during metaprogramming. This package aims to provide light-weight
1288 performant tooling without requiring additional package dependencies.")
1289 (license license:expat)))
1291 (define-public julia-ffmpeg
1293 (name "julia-ffmpeg")
1299 (url "https://github.com/JuliaIO/FFMPEG.jl")
1300 (commit (string-append "v" version))))
1301 (file-name (git-file-name name version))
1303 (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b"))))
1304 (build-system julia-build-system)
1306 `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
1307 ("julia-x264-jll" ,julia-x264-jll)))
1308 (home-page "https://github.com/JuliaIO/FFMPEG.jl")
1309 (synopsis "Julia Package for ffmpeg")
1310 (description "This package is made to be included into packages that just
1311 need the ffmpeg binaries + executables, and don't want the overhead of
1312 @code{VideoIO.jl}.")
1313 (license license:expat)))
1315 (define-public julia-fileio
1317 (name "julia-fileio")
1323 (url "https://github.com/JuliaIO/FileIO.jl")
1324 (commit (string-append "v" version))))
1325 (file-name (git-file-name name version))
1327 (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
1328 (build-system julia-build-system)
1331 (modify-phases %standard-phases
1332 (delete 'reset-gzip-timestamps)
1333 (add-after 'unpack 'skip-network-tests
1335 ;; These tests try to download audio/video files.
1336 (substitute* "test/query.jl"
1337 (("testset.*(MP4|OGG|MATROSKA).*" all)
1338 (string-append all "return\n")))
1339 (substitute* "test/loadsave.jl"
1340 (("testset.*CSVFiles.*" all)
1341 (string-append all "return\n")))
1342 ;; This test tries to download a Julia package.
1343 (substitute* "test/error_handling.jl"
1344 (("testset.*Not installed.*" all)
1345 (string-append all "return\n")))
1346 ;; This test tries to write to the store.
1347 ;; (Error says can't find User 0)
1348 (substitute* "test/runtests.jl"
1349 ((".*test_mimesave.*") "")))))))
1351 `(("julia-requires" ,julia-requires)))
1353 `(("julia-colortypes" ,julia-colortypes)
1354 ("julia-filepathsbase" ,julia-filepathsbase)
1355 ("julia-http" ,julia-http)))
1356 (home-page "https://github.com/JuliaIO/FileIO.jl")
1357 (synopsis "Main Package for IO, loading all different kind of files")
1358 (description "@code{FileIO} aims to provide a common framework for detecting
1359 file formats and dispatching to appropriate readers/writers. The two core
1360 functions in this package are called @code{load} and @code{save}, and offer
1361 high-level support for formatted files (in contrast with Julia's low-level
1362 @code{read} and @code{write}).")
1363 (license license:expat)))
1365 (define-public julia-filepathsbase
1367 (name "julia-filepathsbase")
1373 (url "https://github.com/rofinn/FilePathsBase.jl")
1374 (commit (string-append "v" version))))
1375 (file-name (git-file-name name version))
1377 (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
1378 (build-system julia-build-system)
1380 `(#:tests? #f)) ; Cycle with JLSO.jl
1381 (home-page "https://github.com/rofinn/FilePathsBase.jl")
1382 (synopsis "Filesystem path types in Julia")
1383 (description "@code{FilePathsBase.jl} provides a type based approach to
1384 working with filesystem paths in Julia.")
1385 (license license:expat)))
1387 (define-public julia-fillarrays
1389 (name "julia-fillarrays")
1395 (url "https://github.com/JuliaArrays/FillArrays.jl")
1396 (commit (string-append "v" version))))
1397 (file-name (git-file-name name version))
1399 (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz"))))
1400 (build-system julia-build-system)
1401 (inputs ;required by tests
1402 `(("julia-staticarrays" ,julia-staticarrays)))
1403 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
1404 (synopsis "Lazy matrix representation")
1405 (description "This package lazily represents matrices filled with
1406 a single entry, as well as identity matrices. This package exports the
1407 following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
1408 @code{Trues} and @code{Falses}.")
1409 (license license:expat)))
1411 (define-public julia-finitediff
1413 (name "julia-finitediff")
1419 (url "https://github.com/JuliaDiff/FiniteDiff.jl")
1420 (commit (string-append "v" version))))
1421 (file-name (git-file-name name version))
1423 (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq"))))
1424 (build-system julia-build-system)
1427 (modify-phases %standard-phases
1428 (add-before 'check 'pre-check
1430 ;; We don't want to run all the tests; the Downstream tests
1431 ;; try to download the package registry.
1432 (setenv "GROUP" "Core")
1435 `(("julia-arrayinterface" ,julia-arrayinterface)
1436 ("julia-requires" ,julia-requires)
1437 ("julia-staticarrays" ,julia-staticarrays)))
1439 `(("julia-bandedmatrices" ,julia-bandedmatrices)
1440 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
1441 ("julia-safetestsets" ,julia-safetestsets)))
1442 (home-page "https://github.com/JuliaDiff/FiniteDiff.jl")
1443 (synopsis "Calculations of gradients, Jacobians, and Hessians")
1444 (description "This package is for calculating derivatives, gradients,
1445 Jacobians, Hessians, etc. numerically. This library is for maximizing speed
1446 while giving a usable interface to end users in a way that specializes on array
1447 types and sparsity.")
1448 (license license:expat)))
1450 (define-public julia-finitedifferences
1452 (name "julia-finitedifferences")
1458 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
1459 (commit (string-append "v" version))))
1460 (file-name (git-file-name name version))
1462 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
1463 (build-system julia-build-system)
1465 `(("julia-benchmarktools" ,julia-benchmarktools)))
1467 `(("julia-chainrulescore" ,julia-chainrulescore)
1468 ("julia-richardson" ,julia-richardson)
1469 ("julia-staticarrays" ,julia-staticarrays)))
1470 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
1471 (synopsis "Estimates derivatives with finite differences")
1472 (description "This package calculates approximate derivatives numerically
1473 using finite difference.")
1474 (license license:expat)))
1476 (define-public julia-fixedpointnumbers
1478 (name "julia-fixedpointnumbers")
1484 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
1485 (commit (string-append "v" version))))
1486 (file-name (git-file-name name version))
1488 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
1489 (build-system julia-build-system)
1492 (modify-phases %standard-phases
1493 (add-after 'unpack 'disable-failing-test
1494 (lambda* (#:key outputs #:allow-other-keys)
1495 (substitute* "test/fixed.jl"
1496 ;; A deprecation warning is not thrown
1497 (("@test_logs.*:warn" all) (string-append "# " all)))
1499 (propagated-inputs `(("julia-compat" ,julia-compat)))
1500 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
1501 (synopsis "Fixed point types for Julia")
1502 (description "@code{FixedPointNumbers.jl} implements fixed-point number
1503 types for Julia. A fixed-point number represents a fractional, or
1504 non-integral, number. In contrast with the more widely known floating-point
1505 numbers, with fixed-point numbers the decimal point doesn't \"float\":
1506 fixed-point numbers are effectively integers that are interpreted as being
1507 scaled by a constant factor. Consequently, they have a fixed number of
1508 digits (bits) after the decimal (radix) point.")
1509 (license license:expat)))
1511 (define-public julia-formatting
1513 (name "julia-formatting")
1519 (url "https://github.com/JuliaIO/Formatting.jl")
1520 (commit (string-append "v" version))))
1521 (file-name (git-file-name name version))
1523 (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh"))))
1524 (build-system julia-build-system)
1525 (home-page "https://github.com/JuliaIO/Formatting.jl")
1526 (synopsis "Julia package to provide Python-like formatting support")
1527 (description "This package offers Python-style general formatting and
1528 c-style numerical formatting.")
1529 (license license:expat)))
1531 (define-public julia-forwarddiff
1533 (name "julia-forwarddiff")
1539 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
1540 (commit (string-append "v" version))))
1541 (file-name (git-file-name name version))
1543 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
1544 (build-system julia-build-system)
1545 (inputs ;required for tests
1546 `(("julia-calculus" ,julia-calculus)
1547 ("julia-difftests" ,julia-difftests)))
1549 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
1550 ("julia-diffresults" ,julia-diffresults)
1551 ("julia-diffrules" ,julia-diffrules)
1552 ("julia-nanmath" ,julia-nanmath)
1553 ("julia-specialfunctions" ,julia-specialfunctions)
1554 ("julia-staticarrays" ,julia-staticarrays)))
1555 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
1556 (synopsis "Methods to take multidimensional derivatives")
1557 (description "This package implements methods to take derivatives,
1558 gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
1559 functions (or any callable object, really) using forward mode automatic
1560 differentiation (AD).")
1561 (license license:expat)))
1563 (define-public julia-functionwrappers
1565 (name "julia-functionwrappers")
1571 (url "https://github.com/yuyichao/FunctionWrappers.jl")
1572 (commit (string-append "v" version))))
1573 (file-name (git-file-name name version))
1575 (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
1576 (build-system julia-build-system)
1579 (modify-phases %standard-phases
1580 (add-after 'unpack 'adjust-tests
1582 (substitute* "test/runtests.jl"
1583 (("testset \\\"Abstract.*" all)
1584 (string-append all "return\n"))))))))
1585 (home-page "https://github.com/yuyichao/FunctionWrappers.jl")
1586 (synopsis "Type stable and efficient wrapper of arbitrary functions")
1587 (description "This package provides a type stable and efficient wrapper of
1588 arbitrary functions.")
1589 (license license:expat)))
1591 (define-public julia-fuzzycompletions
1593 (name "julia-fuzzycompletions")
1599 (url "https://github.com/JunoLab/FuzzyCompletions.jl")
1600 (commit (string-append "v" version))))
1601 (file-name (git-file-name name version))
1603 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
1604 (build-system julia-build-system)
1607 (modify-phases %standard-phases
1608 (add-after 'unpack 'skip-failing-test
1610 (substitute* "test/runtests.jl"
1611 ((".*RPLE.*") "")))))))
1612 (home-page "https://github.com/JunoLab/FuzzyCompletions.jl")
1613 (synopsis "Fuzzy completion provider for Julia")
1615 "FuzzyCompletions provides fuzzy completions for a Julia runtime session.")
1616 (license license:expat)))
1618 (define-public julia-genericlinearalgebra
1620 (name "julia-genericlinearalgebra")
1626 (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1627 (commit (string-append "v" version))))
1628 (file-name (git-file-name name version))
1630 (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
1631 (build-system julia-build-system)
1634 (modify-phases %standard-phases
1635 (add-after 'unpack 'adjust-test-suite
1637 (substitute* "test/runtests.jl"
1638 ((".*lapack.*") "")))))))
1640 `(("julia-quaternions" ,julia-quaternions)))
1641 (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1642 (synopsis "Generic numerical linear algebra")
1643 (description "The purpose of this package is partly to extend linear algebra
1644 functionality in base to cover generic element types, e.g. @code{BigFloat} and
1645 @code{Quaternion}, and partly to be a place to experiment with fast linear
1646 algebra routines written in Julia (except for optimized BLAS).")
1647 (license license:expat)))
1649 (define-public julia-genericschur
1651 (name "julia-genericschur")
1657 (url "https://github.com/RalphAS/GenericSchur.jl")
1658 (commit (string-append "v" version))))
1659 (file-name (git-file-name name version))
1661 (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d"))))
1662 (build-system julia-build-system)
1665 (modify-phases %standard-phases
1666 (add-after 'unpack 'adjust-test-suite
1668 (substitute* "test/complex.jl"
1669 ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
1670 (("A = _example") "#A = _example")
1671 (("schurtest\\(A,20\\)") ""))
1672 (substitute* "test/runtests.jl"
1673 ;; Test errors relating to liblapack.so
1674 ((".*complex\\.jl.*") "")
1675 ((".*real\\.jl.*") "")
1676 ;; GenericSVD is deprecated upstream
1677 ((".*gordschur\\.jl.*") "")))))))
1678 (home-page "https://github.com/RalphAS/GenericSchur.jl")
1679 (synopsis "Schur decomposition of matrices with generic element types")
1680 (description "The Schur decomposition is the workhorse for eigensystem
1681 analysis of dense matrices. The diagonal eigen-decomposition of normal
1682 (especially Hermitian) matrices is an important special case, but for non-normal
1683 matrices the Schur form is often more useful.")
1684 (license license:expat)))
1686 (define-public julia-graphics
1688 (name "julia-graphics")
1694 (url "https://github.com/JuliaGraphics/Graphics.jl")
1695 (commit (string-append "v" version))))
1696 (file-name (git-file-name name version))
1698 (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn"))))
1699 (build-system julia-build-system)
1701 `(("julia-colors" ,julia-colors)
1702 ("julia-nanmath" ,julia-nanmath)))
1703 (home-page "https://github.com/JuliaGraphics/Graphics.jl")
1704 (synopsis "Base graphics in Julia")
1705 (description "@code{Graphics.jl} is an abstraction layer for graphical
1706 operations in Julia.")
1707 (license license:expat)))
1709 (define-public julia-gumbo
1711 (name "julia-gumbo")
1717 (url "https://github.com/JuliaWeb/Gumbo.jl")
1718 (commit (string-append "v" version))))
1719 (file-name (git-file-name name version))
1721 (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
1722 (build-system julia-build-system)
1724 `(("julia-abstracttrees" ,julia-abstracttrees)
1725 ("julia-gumbo-jll" ,julia-gumbo-jll)))
1726 (home-page "https://github.com/JuliaWeb/Gumbo.jl")
1727 (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
1728 (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
1729 library for parsing HTML.")
1730 (license license:expat)))
1732 (define-public julia-http
1740 (url "https://github.com/JuliaWeb/HTTP.jl")
1741 (commit (string-append "v" version))))
1742 (file-name (git-file-name name version))
1744 (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk"))))
1745 (build-system julia-build-system)
1748 (modify-phases %standard-phases
1749 (add-before 'install 'disable-network-tests
1751 (substitute* "test/runtests.jl"
1752 (("\"async.jl") "# \"async.jl")
1753 (("\"client.jl") "# \"client.jl"))
1754 (substitute* "test/aws4.jl"
1755 (("@testset.*HTTP.request with AWS authentication.*" all)
1756 (string-append all "return\n")))
1757 (substitute* "test/insert_layers.jl"
1758 (("@testset.*Inserted final layer runs handler.*" all)
1759 (string-append all "return\n")))
1760 (substitute* "test/multipart.jl"
1761 (("@testset \"Setting of Content-Type.*" all)
1762 (string-append all "return\n"))
1763 (("@testset \"Deprecation of .*" all)
1764 (string-append all "return\n")))
1765 (substitute* "test/websockets.jl"
1766 (("@testset.*External Host.*" all)
1767 (string-append all "return\n")))
1768 (substitute* "test/messages.jl"
1769 (("@testset.*Read methods.*" all)
1770 (string-append all "return\n"))
1771 (("@testset.*Body - .*" all)
1772 (string-append all "return\n"))
1773 (("@testset.*Write to file.*" all)
1774 (string-append all "return\n")))
1777 `(("julia-inifile" ,julia-inifile)
1778 ("julia-mbedtls" ,julia-mbedtls)
1779 ("julia-uris" ,julia-uris)))
1780 ;; required for tests
1782 `(("julia-json" ,julia-json)
1783 ("julia-bufferedstreams" ,julia-bufferedstreams)))
1784 (home-page "https://juliaweb.github.io/HTTP.jl/")
1785 (synopsis "HTTP support for Julia")
1786 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
1787 implementing both a client and a server.")
1788 (license license:expat)))
1790 (define-public julia-identityranges
1792 (name "julia-identityranges")
1798 (url "https://github.com/JuliaArrays/IdentityRanges.jl")
1799 (commit (string-append "v" version))))
1800 (file-name (git-file-name name version))
1802 (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml"))))
1803 (build-system julia-build-system)
1805 `(("julia-offsetarrays" ,julia-offsetarrays)))
1806 (home-page "https://github.com/JuliaArrays/IdentityRanges.jl")
1807 (synopsis "Ranges that preserve indices of views")
1808 (description "@code{IdentityRanges} are Julia-language a helper type for
1809 creating \"views\" of arrays. They are a custom type of AbstractUnitRange that
1810 makes it easy to preserve the indices of array views. The key property of an
1811 @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the
1812 type/package), and that they support arbitrary start/stop indices (i.e., not
1813 just starting at 1).")
1814 (license license:expat)))
1816 (define-public julia-ifelse
1818 (name "julia-ifelse")
1824 (url "https://github.com/sciml/ifelse.jl")
1825 (commit (string-append "v" version))))
1826 (file-name (git-file-name name version))
1828 (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
1829 (build-system julia-build-system)
1830 (home-page "https://github.com/sciml/ifelse.jl")
1831 (synopsis "Function form of the if-else conditional statement")
1832 (description "This package provides a convenient function form of the
1833 conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
1834 (license license:expat)))
1836 (define-public julia-imageaxes
1838 (name "julia-imageaxes")
1844 (url "https://github.com/JuliaImages/ImageAxes.jl")
1845 (commit (string-append "v" version))))
1846 (file-name (git-file-name name version))
1848 (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd"))))
1849 (build-system julia-build-system)
1851 `(("julia-axisarrays" ,julia-axisarrays)
1852 ("julia-imagecore" ,julia-imagecore)
1853 ("julia-reexport" ,julia-reexport)
1854 ("julia-simpletraits" ,julia-simpletraits)))
1856 `(("julia-unitful" ,julia-unitful)))
1857 (home-page "https://github.com/JuliaImages/ImageAxes.jl")
1858 (synopsis "Julia package for giving \"meaning\" to the axes of an image")
1859 (description "This small package supports the representation of images as
1860 @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with
1861 such arrays easy via traits.")
1862 (license license:expat)))
1864 (define-public julia-imagebase
1866 (name "julia-imagebase")
1872 (url "https://github.com/JuliaImages/ImageBase.jl")
1873 (commit (string-append "v" version))))
1874 (file-name (git-file-name name version))
1876 (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
1877 (build-system julia-build-system)
1879 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1881 `(("julia-imagecore" ,julia-imagecore)
1882 ("julia-reexport" ,julia-reexport)))
1884 ; `(("julia-imagemagick" ,julia-imagemagick)
1885 ; ("julia-offsetarrays" ,julia-offsetarrays)
1886 ; ("julia-testimages" ,julia-testimages)))
1887 (home-page "https://github.com/JuliaImages/ImageBase.jl")
1888 (synopsis "Wrapper package around ImageCore")
1889 (description "This is a twin package to @code{ImageCore} with functions that
1890 are used among many of the packages in JuliaImages. The main purpose of this
1891 package is to reduce unnecessary compilation overhead from external
1893 (license license:expat)))
1895 (define-public julia-imagecore
1897 (name "julia-imagecore")
1903 (url "https://github.com/JuliaImages/ImageCore.jl")
1904 (commit (string-append "v" version))))
1905 (file-name (git-file-name name version))
1907 (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq"))))
1908 (build-system julia-build-system)
1910 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1912 `(("julia-abstractffts" ,julia-abstractffts)
1913 ("julia-colors" ,julia-colors)
1914 ("julia-colorvectorspace" ,julia-colorvectorspace)
1915 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
1916 ("julia-graphics" ,julia-graphics)
1917 ("julia-mappedarrays" ,julia-mappedarrays)
1918 ("julia-mosaicviews" ,julia-mosaicviews)
1919 ("julia-offsetarrays" ,julia-offsetarrays)
1920 ("julia-paddedviews" ,julia-paddedviews)
1921 ("julia-reexport" ,julia-reexport)))
1923 ; `(("julia-aqua" ,julia-aqua)
1924 ; ("julia-colorvectorspace" ,julia-colorvectorspace)
1925 ; ("julia-documenter" ,julia-documenter)
1926 ; ("julia-fftw" ,julia-fftw)
1927 ; ("julia-imageinterminal" ,julia-imageinterminal)
1928 ; ("julia-imagemagick" ,julia-imagemagick)
1929 ; ("julia-referencetests" ,julia-referencetests)
1930 ; ("julia-statistics" ,julia-statistics)))
1931 (home-page "https://github.com/JuliaImages/ImageCore.jl")
1932 (synopsis "Julia types for representing images")
1933 (description "@code{ImageCore} is the lowest-level component of the system
1934 of packages designed to support image processing and computer vision.")
1935 (license license:expat)))
1937 (define-public julia-imageinterminal
1939 (name "julia-imageinterminal")
1945 (url "https://github.com/JuliaImages/ImageInTerminal.jl")
1946 (commit (string-append "v" version))))
1947 (file-name (git-file-name name version))
1949 (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
1950 (build-system julia-build-system)
1952 `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
1954 `(("julia-crayons" ,julia-crayons)
1955 ("julia-imagebase" ,julia-imagebase)
1956 ("julia-imagecore" ,julia-imagecore)
1957 ("julia-requires" ,julia-requires)))
1959 ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations)
1960 ; ("julia-imagemagick" ,julia-imagemagick)
1961 ; ("julia-imagetransformations" ,julia-imagetransformations)
1962 ; ("julia-offsetarrays" ,julia-offsetarrays)
1963 ; ("julia-referencetests" ,julia-referencetests)
1964 ; ("julia-rotations" ,julia-rotations)
1965 ; ("julia-sparsearrays" ,julia-sparsearrays)
1966 ; ("julia-testimages" ,julia-testimages)))
1967 (home-page "https://github.com/JuliaImages/ImageInTerminal.jl")
1968 (synopsis "Julia package for displaying images in the terminal")
1969 (description "@code{ImageInTerminal.jl} is a drop-in package that once
1970 imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays
1971 (i.e. Images) are displayed in the interactive REPL. The displayed images will
1972 be downscaled to fit into the size of your active terminal session.")
1973 (license license:expat)))
1975 (define-public julia-imagemagick
1977 (name "julia-imagemagick")
1983 (url "https://github.com/JuliaIO/ImageMagick.jl")
1984 (commit (string-append "v" version))))
1985 (file-name (git-file-name name version))
1987 (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
1988 (build-system julia-build-system)
1991 (modify-phases %standard-phases
1992 (add-after 'unpack 'skip-failing-test
1994 ;; These tests try to download from the imagemagick.org
1995 (substitute* "test/runtests.jl"
1996 ((".*readremote\\.jl.*") ""))
1997 ;; Tests with the color gray are hard.
1998 (substitute* "test/constructed_images.jl"
1999 (("test (b == aa)" _ test) (string-append "test_nowarn " test))
2000 (("test (B == map)" _ test) (string-append "test_nowarn " test)))
2003 `(("julia-fileio" ,julia-fileio)
2004 ("julia-imagecore" ,julia-imagecore)
2005 ("julia-imagemagick-jll" ,julia-imagemagick-jll)))
2007 `(("julia-colors" ,julia-colors)
2008 ("julia-colorvectorspace" ,julia-colorvectorspace)
2009 ("julia-imagemetadata" ,julia-imagemetadata)
2010 ("julia-imageshow" ,julia-imageshow)
2011 ("julia-imagetransformations" ,julia-imagetransformations)
2012 ("julia-indirectarrays" ,julia-indirectarrays)
2013 ("julia-offsetarrays" ,julia-offsetarrays)
2014 ("julia-zipfile" ,julia-zipfile)))
2015 (home-page "https://github.com/JuliaIO/ImageMagick.jl")
2016 (synopsis "Thin wrapper for ImageMagick")
2017 (description "This package provides a wrapper around ImageMagick version 6.
2018 It was split off from @code{Images.jl} to make image I/O more modular.")
2019 (license license:expat)))
2021 (define-public julia-imagemetadata
2023 (name "julia-imagemetadata")
2029 (url "https://github.com/JuliaImages/ImageMetadata.jl")
2030 (commit (string-append "v" version))))
2031 (file-name (git-file-name name version))
2033 (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1"))))
2034 (build-system julia-build-system)
2036 `(("julia-axisarrays" ,julia-axisarrays)
2037 ("julia-imageaxes" ,julia-imageaxes)
2038 ("julia-imagecore" ,julia-imagecore)
2039 ("julia-indirectarrays" ,julia-indirectarrays)))
2041 `(("julia-offsetarrays" ,julia-offsetarrays)
2042 ("julia-simpletraits" ,julia-simpletraits)
2043 ("julia-unitful" ,julia-unitful)))
2044 (home-page "https://github.com/JuliaImages/ImageMetadata.jl")
2045 (synopsis "Julia package for images having metadata")
2046 (description "@code{ImageMetadata} is a simple package providing utilities
2047 for working with images that have metadata attached. For example, you might
2048 want to associate an image with the date on which the picture was taken, or an
2049 MRI scan with patient data, or an astronomical image with sky coordinates and
2050 information about the detector used to acquire the image.")
2051 (license license:expat)))
2053 (define-public julia-imageshow
2055 (name "julia-imageshow")
2061 (url "https://github.com/JuliaImages/ImageShow.jl")
2062 (commit (string-append "v" version))))
2063 (file-name (git-file-name name version))
2065 (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
2066 (build-system julia-build-system)
2068 `(#:tests? #f)) ; cycle with ImageMagick.jl.
2070 `(("julia-fileio" ,julia-fileio)
2071 ("julia-imagebase" ,julia-imagebase)
2072 ("julia-imagecore" ,julia-imagecore)
2073 ("julia-offsetarrays" ,julia-offsetarrays)
2074 ("julia-stackviews" ,julia-stackviews)))
2076 ; `(("julia-imagedistances" ,julia-imagedistances)
2077 ; ("julia-imagemagick" ,julia-imagemagick)
2078 ; ("julia-suppressor" ,julia-suppressor)
2079 ; ("julia-testimages" ,julia-testimages)))
2080 (home-page "https://github.com/JuliaImages/ImageShow.jl")
2082 "Inline graphical display of images in Julia graphical environments")
2083 (description "This package implements image @code{show} methods suitable
2084 for graphical platforms such as IJulia. It is intended to provide convenient
2085 inline presentation of greyscale or color images.")
2086 (license license:expat)))
2088 (define-public julia-imagetransformations
2090 (name "julia-imagetransformations")
2096 (url "https://github.com/JuliaImages/ImageTransformations.jl")
2097 (commit (string-append "v" version))))
2098 (file-name (git-file-name name version))
2100 (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
2101 (build-system julia-build-system)
2103 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2105 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2106 ("julia-colorvectorspace" ,julia-colorvectorspace)
2107 ("julia-coordinatetransformations" ,julia-coordinatetransformations)
2108 ("julia-identityranges" ,julia-identityranges)
2109 ("julia-imagecore" ,julia-imagecore)
2110 ("julia-interpolations" ,julia-interpolations)
2111 ("julia-offsetarrays" ,julia-offsetarrays)
2112 ("julia-rotations" ,julia-rotations)
2113 ("julia-staticarrays" ,julia-staticarrays)))
2115 ; `(("julia-imagemagick" ,julia-imagemagick)
2116 ; ("julia-referencetests" ,julia-referencetests)
2117 ; ("julia-testimages" ,julia-testimages)))
2118 (home-page "https://github.com/JuliaImages/ImageTransformations.jl")
2119 (synopsis "Geometric transformations on images for Julia")
2120 (description "This package provides support for image resizing, image
2121 rotation, and other spatial transformations of arrays.")
2122 (license license:expat)))
2124 (define-public julia-indexing
2126 (name "julia-indexing")
2132 (url "https://github.com/andyferris/Indexing.jl")
2133 (commit (string-append "v" version))))
2134 (file-name (git-file-name name version))
2136 (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx"))))
2137 (build-system julia-build-system)
2138 (home-page "https://github.com/andyferris/Indexing.jl")
2139 (synopsis "Generalized indexing for Julia")
2140 (description "This package defines functions for getting multiple indices
2141 out of dictionaries, tuples, etc, extending this ability beyond
2142 @code{AbstractArray}.")
2143 (license license:expat)))
2145 (define-public julia-indirectarrays
2147 (name "julia-indirectarrays")
2153 (url "https://github.com/JuliaArrays/IndirectArrays.jl")
2154 (commit (string-append "v" version))))
2155 (file-name (git-file-name name version))
2157 (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s"))))
2158 (build-system julia-build-system)
2160 `(("julia-colors" ,julia-colors)
2161 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2162 ("julia-mappedarrays" ,julia-mappedarrays)))
2163 (home-page "https://github.com/JuliaArrays/IndirectArrays.jl")
2164 (synopsis "Julia implementation of indexed arrays")
2165 (description "An @code{IndirectArray} is one that encodes data using a
2166 combination of an @code{index} and a @code{value} table. Each element is
2167 assigned its own index, which is used to retrieve the value from the
2168 @code{value} table. Among other uses, @code{IndirectArrays} can represent
2169 indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
2170 (license license:expat)))
2172 (define-public julia-inifile
2174 (name "julia-inifile")
2180 (url "https://github.com/JuliaIO/IniFile.jl")
2181 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
2182 (file-name (git-file-name name version))
2184 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
2185 (build-system julia-build-system)
2186 (home-page "https://github.com/JuliaIO/IniFile.jl")
2187 (synopsis "Reading Windows-style INI files")
2188 (description "This is a Julia package that defines an IniFile type that
2189 interfaces with @file{.ini} files.")
2190 (license license:expat)))
2192 (define-public julia-interpolations
2194 (name "julia-interpolations")
2200 (url "https://github.com/JuliaMath/Interpolations.jl")
2201 (commit (string-append "v" version))))
2202 (file-name (git-file-name name version))
2204 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
2205 (build-system julia-build-system)
2207 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2208 ("julia-offsetarrays" ,julia-offsetarrays)
2209 ("julia-ratios" ,julia-ratios)
2210 ("julia-requires" ,julia-requires)
2211 ("julia-staticarrays" ,julia-staticarrays)
2212 ("julia-woodburymatrices" ,julia-woodburymatrices)))
2214 `(("julia-dualnumbers" ,julia-dualnumbers)
2215 ("julia-forwarddiff" ,julia-forwarddiff)
2216 ("julia-offsetarrays" ,julia-offsetarrays)
2217 ("julia-unitful" ,julia-unitful)
2218 ("julia-zygote" ,julia-zygote)))
2219 (home-page "https://github.com/JuliaMath/Interpolations.jl")
2220 (synopsis "Continuous interpolation of discrete datasets")
2221 (description "This package implements a variety of interpolation schemes for
2222 the Julia language. It has the goals of ease-of-use, broad algorithmic support,
2223 and exceptional performance.")
2224 (license license:expat)))
2226 (define-public julia-intervalsets
2228 (name "julia-intervalsets")
2234 (url "https://github.com/JuliaMath/IntervalSets.jl")
2235 (commit (string-append "v" version))))
2236 (file-name (git-file-name name version))
2238 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
2239 (build-system julia-build-system)
2241 `(("julia-ellipsisnotation" ,julia-ellipsisnotation)))
2243 `(("julia-offsetarrays" ,julia-offsetarrays)))
2244 (home-page "https://github.com/JuliaMath/IntervalSets.jl")
2245 (synopsis "Interval Sets for Julia")
2246 (description "This package is intended to implement a \"minimal\" foundation
2247 for intervals upon which other packages might build. In particular, we
2248 encourage type-piracy for the reason that only one interval package can
2249 unambiguously define the @code{..} and @code{±} operators.")
2250 (license license:expat)))
2252 (define-public julia-invertedindices
2254 (name "julia-invertedindices")
2260 (url "https://github.com/mbauman/InvertedIndices.jl")
2261 (commit (string-append "v" version))))
2262 (file-name (git-file-name name version))
2264 (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46"))))
2265 (build-system julia-build-system)
2267 `(("julia-offsetarrays" ,julia-offsetarrays)))
2268 (home-page "https://github.com/mbauman/InvertedIndices.jl")
2269 (synopsis "Index type that allows for inverted selections")
2270 (description "This package just exports one type: the @code{InvertedIndex},
2271 or @code{Not} for short. It can wrap any supported index type and may be used
2272 as an index into any @code{AbstractArray} subtype, including OffsetArrays.")
2273 (license license:expat)))
2275 (define-public julia-iocapture
2277 (name "julia-iocapture")
2283 (url "https://github.com/JuliaDocs/IOCapture.jl")
2284 (commit (string-append "v" version))))
2285 (file-name (git-file-name name version))
2287 (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb"))))
2288 (build-system julia-build-system)
2289 (home-page "https://github.com/JuliaDocs/IOCapture.jl")
2290 (synopsis "Capture standard output and error streams")
2291 (description "This package provides the @code{IOCapture.capture(f)}
2292 function, which captures the standard output and standard error, and returns it
2293 as a string together with the return value.")
2294 (license license:expat)))
2296 (define-public julia-irtools
2298 (name "julia-irtools")
2304 (url "https://github.com/FluxML/IRTools.jl")
2305 (commit (string-append "v" version))))
2306 (file-name (git-file-name name version))
2308 (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql"))))
2310 '(#:tests? #f)) ;require Documenter, not packaged yet
2311 (build-system julia-build-system)
2313 `(("julia-macrotools" ,julia-macrotools)))
2314 (home-page "https://github.com/FluxML/IRTools.jl")
2315 (synopsis "Simple and flexible IR format")
2316 (description "This package provides a simple and flexible IR format,
2317 expressive enough to work with both lowered and typed Julia code, as well as
2318 external IRs. It can be used with Julia metaprogramming tools such as
2320 (license license:expat)))
2322 (define-public julia-iteratorinterfaceextensions
2324 (name "julia-iteratorinterfaceextensions")
2330 (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2331 (commit (string-append "v" version))))
2332 (file-name (git-file-name name version))
2334 (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"))))
2335 (build-system julia-build-system)
2336 (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2337 (synopsis "Traits for Julia iterators")
2338 (description "IteratorInterfaceExtensions defines a small number of
2339 extensions to the iterator interface.")
2340 (license license:expat)))
2342 (define-public julia-itertools
2344 (name "julia-itertools")
2350 (url "https://github.com/JuliaCollections/IterTools.jl")
2351 (commit (string-append "v" version))))
2352 (file-name (git-file-name name version))
2354 (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq"))))
2355 (build-system julia-build-system)
2356 (home-page "https://github.com/JuliaCollections/IterTools.jl")
2357 (synopsis "Common functional iterator patterns")
2359 "Common functional iterator patterns (formerly @code{Iterators.jl}).")
2360 (license license:expat)))
2362 (define-public julia-json
2370 (url "https://github.com/JuliaIO/JSON.jl")
2371 (commit (string-append "v" version))))
2372 (file-name (git-file-name name version))
2374 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
2375 (build-system julia-build-system)
2377 `(("julia-datastructures" ,julia-datastructures)
2378 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2379 ("julia-parsers" ,julia-parsers)
2380 ("julia-offsetarrays" ,julia-offsetarrays)))
2381 (home-page "https://github.com/JuliaIO/JSON.jl")
2382 (synopsis "JSON parsing and printing library for Julia")
2383 (description "@code{JSON.jl} is a pure Julia module which supports parsing
2384 and printing JSON documents.")
2385 (license license:expat)))
2387 (define-public julia-json3
2389 (name "julia-json3")
2395 (url "https://github.com/quinnj/JSON3.jl")
2396 (commit (string-append "v" version))))
2397 (file-name (git-file-name name version))
2399 (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17"))))
2400 (build-system julia-build-system)
2402 `(("julia-parsers" ,julia-parsers)
2403 ("julia-structtypes" ,julia-structtypes)))
2404 (home-page "https://github.com/quinnj/JSON3.jl")
2405 (synopsis "JSON package for Julia")
2406 (description "This package provides another JSON package for Julia, with a
2407 focus on speed and slick struct mapping.")
2408 (license license:expat)))
2410 (define-public julia-lazyarrays
2412 (name "julia-lazyarrays")
2418 (url "https://github.com/JuliaArrays/LazyArrays.jl")
2419 (commit (string-append "v" version))))
2420 (file-name (git-file-name name version))
2422 (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5"))))
2423 (build-system julia-build-system)
2425 `(("julia-arraylayouts" ,julia-arraylayouts)
2426 ("julia-fillarrays" ,julia-fillarrays)
2427 ("julia-macrotools" ,julia-macrotools)
2428 ("julia-matrixfactorizations" ,julia-matrixfactorizations)
2429 ("julia-staticarrays" ,julia-staticarrays)))
2431 `(("julia-tracker" ,julia-tracker)))
2432 (home-page "https://github.com/JuliaArrays/LazyArrays.jl")
2433 (synopsis "Lazy arrays and linear algebra")
2434 (description "This package supports lazy analogues of array operations like
2435 @code{vcat}, @code{hcat}, and multiplication. This helps with the
2436 implementation of matrix-free methods for iterative solvers.")
2437 (license license:expat)))
2439 (define-public julia-logexpfunctions
2441 (name "julia-logexpfunctions")
2447 (url "https://github.com/JuliaStats/LogExpFunctions.jl")
2448 (commit (string-append "v" version))))
2449 (file-name (git-file-name name version))
2451 (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n"))))
2452 (build-system julia-build-system)
2454 `(("julia-docstringextensions" ,julia-docstringextensions)))
2456 `(("julia-offsetarrays" ,julia-offsetarrays)))
2457 (home-page "https://github.com/JuliaStats/LogExpFunctions.jl")
2458 (synopsis "Special functions based on @code{log} and @code{exp}")
2459 (description "Various special functions based on log and exp moved from
2460 @code{StatsFuns.jl} into a separate package, to minimize dependencies. These
2461 functions only use native Julia code, so there is no need to depend on
2462 @code{librmath} or similar libraries.")
2463 (license license:expat)))
2465 (define-public julia-macrotools
2467 (name "julia-macrotools")
2473 (url "https://github.com/FluxML/MacroTools.jl")
2474 (commit (string-append "v" version))))
2475 (file-name (git-file-name name version))
2477 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
2478 (build-system julia-build-system)
2479 (home-page "https://fluxml.ai/MacroTools.jl")
2480 (synopsis "Tools for working with Julia code and expressions")
2481 (description "This library provides tools for working with Julia code and
2482 expressions. This includes a template-matching system and code-walking tools
2483 that let you do deep transformations of code.")
2484 (license license:expat)))
2486 (define-public julia-mappedarrays
2488 (name "julia-mappedarrays")
2494 (url "https://github.com/JuliaArrays/MappedArrays.jl")
2495 (commit (string-append "v" version))))
2496 (file-name (git-file-name name version))
2498 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
2499 (build-system julia-build-system)
2501 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
2503 `(("julia-colortypes" ,julia-colortypes)
2504 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2505 ("julia-offsetarrays" ,julia-offsetarrays)))
2506 (home-page "https://github.com/JuliaArrays/MappedArrays.jl")
2507 (synopsis "Lazy in-place transformations of arrays")
2508 (description "This package implements \"lazy\" in-place elementwise
2509 transformations of arrays for the Julia programming language. Explicitly, it
2510 provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a
2511 specified (but arbitrary) function f, without ever having to compute M
2512 explicitly (in the sense of allocating storage for M). The name of the package
2513 comes from the fact that @code{M == map(f, A)}.")
2514 (license license:expat)))
2516 (define-public julia-matrixfactorizations
2518 (name "julia-matrixfactorizations")
2524 (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2525 (commit (string-append "v" version))))
2526 (file-name (git-file-name name version))
2528 (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb"))))
2529 (build-system julia-build-system)
2532 (modify-phases %standard-phases
2533 (add-after 'unpack 'skip-failing-test
2535 ;; Tests with math functions are hard.
2536 (substitute* "test/test_ul.jl"
2537 (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
2538 ;; Also skip the REPL test.
2539 (("test String") "test_nowarn String"))
2542 `(("julia-arraylayouts" ,julia-arraylayouts)))
2543 (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2544 (synopsis "Julia package to contain non-standard matrix factorizations")
2545 (description "A Julia package to contain non-standard matrix factorizations.
2546 At the moment it implements the QL, RQ, and UL factorizations, a combined
2547 Cholesky factorization with inverse, and polar decompositions. In the future it
2548 may include other factorizations such as the LQ factorization.")
2549 (license license:expat)))
2551 (define-public julia-mbedtls
2553 (name "julia-mbedtls")
2559 (url "https://github.com/JuliaLang/MbedTLS.jl")
2560 (commit (string-append "v" version))))
2561 (file-name (git-file-name name version))
2563 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
2564 (build-system julia-build-system)
2567 (modify-phases %standard-phases
2568 (add-before 'install 'disable-network-tests
2569 ;; Tries to connect to httpbin.org
2571 (substitute* "test/runtests.jl"
2572 (("testhost =") "return #"))
2574 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
2575 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
2576 (synopsis "Apache's mbed TLS library wrapper")
2577 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
2578 TLS} and cryptography C library for Julia.")
2579 (license license:expat)))
2581 (define-public julia-measurements
2583 (name "julia-measurements")
2589 (url "https://github.com/JuliaPhysics/Measurements.jl")
2590 (commit (string-append "v" version))))
2591 (file-name (git-file-name name version))
2593 (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
2594 (build-system julia-build-system)
2596 `(("julia-calculus" ,julia-calculus)
2597 ("julia-recipesbase" ,julia-recipesbase)
2598 ("julia-requires" ,julia-requires)))
2600 `(("julia-quadgk" ,julia-quadgk)
2601 ("julia-specialfunctions" ,julia-specialfunctions)
2602 ("julia-unitful" ,julia-unitful)))
2603 (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
2604 (synopsis "Error propagation calculator and library")
2605 (description "@code{Measurements.jl} is an error propagation calculator and
2606 library for physical measurements. It supports real and complex numbers with
2607 uncertainty, arbitrary precision calculations, operations with arrays, and
2608 numerical integration. The linear error propagation theory is employed to
2609 propagate the errors.")
2610 (license license:expat)))
2612 (define-public julia-measures
2614 (name "julia-measures")
2620 (url "https://github.com/JuliaGraphics/Measures.jl")
2621 (commit (string-append "v" version))))
2622 (file-name (git-file-name name version))
2624 (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l"))))
2625 (build-system julia-build-system)
2626 (home-page "https://github.com/JuliaGraphics/Measures.jl")
2627 (synopsis "Unified measure and coordinates types")
2628 (description "This library generalizes and unifies the notion of measures
2629 used in Compose, Compose3D, and Escher. It allows building up and representing
2630 expressions involving differing types of units that are then evaluated,
2631 resolving them into absolute units.")
2632 (license license:expat)))
2634 (define-public julia-missings
2636 (name "julia-missings")
2642 (url "https://github.com/JuliaData/Missings.jl")
2643 (commit (string-append "v" version))))
2644 (file-name (git-file-name name version))
2646 (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5"))))
2647 (build-system julia-build-system)
2649 `(("julia-dataapi" ,julia-dataapi)))
2650 (home-page "https://github.com/JuliaData/Missings.jl")
2651 (synopsis "Additional missing value support for Julia")
2652 (description "This package provides additional functionality for working
2653 with @code{missing} values in Julia.")
2654 (license license:expat)))
2656 (define-public julia-mlstyle
2658 (name "julia-mlstyle")
2664 (url "https://github.com/thautwarm/MLStyle.jl")
2665 (commit (string-append "v" version))))
2666 (file-name (git-file-name name version))
2668 (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
2669 (build-system julia-build-system)
2671 `(("julia-datastructures" ,julia-datastructures)))
2672 (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
2673 (synopsis "Julia functional programming infrastructures")
2674 (description "This package provides consistent and extensible functional
2675 programming infrastructures, and metaprogramming facilities.")
2676 (license license:expat)))
2678 (define-public julia-mocking
2680 (name "julia-mocking")
2686 (url "https://github.com/invenia/Mocking.jl")
2687 (commit (string-append "v" version))))
2688 (file-name (git-file-name name version))
2690 (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg"))))
2691 (build-system julia-build-system)
2693 `(("julia-compat" ,julia-compat)
2694 ("julia-exprtools" ,julia-exprtools)))
2695 (home-page "https://github.com/invenia/Mocking.jl")
2696 (synopsis "Overload Julia function calls")
2697 (description "The purpose of this package is to allow Julia function calls
2698 to be temporarily overloaded for the purpose of testing.")
2699 (license license:expat)))
2701 (define-public julia-mosaicviews
2703 (name "julia-mosaicviews")
2709 (url "https://github.com/JuliaArrays/MosaicViews.jl")
2710 (commit (string-append "v" version))))
2711 (file-name (git-file-name name version))
2713 (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
2714 (build-system julia-build-system)
2716 `(#:tests? #f)) ; Cycle with ImageCore.jl
2718 `(("julia-mappedarrays" ,julia-mappedarrays)
2719 ("julia-paddedviews" ,julia-paddedviews)
2720 ("julia-stackviews" ,julia-stackviews)))
2722 ; `(("julia-colorvectorspace" ,julia-colorvectorspace)
2723 ; ("julia-imagecore" ,julia-imagecore)))
2724 (home-page "https://github.com/JuliaArrays/MosaicViews.jl")
2726 "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices")
2727 (description "When visualizing images, it is not uncommon to provide a 2D
2728 view of different image sources. For example, comparing multiple images of
2729 different sizes, getting a preview of machine learning dataset. This package
2730 aims to provide easy-to-use tools for such tasks.")
2731 (license license:expat)))
2733 (define-public julia-msgpack
2735 (name "julia-msgpack")
2741 (url "https://github.com/JuliaIO/MsgPack.jl")
2742 (commit (string-append "v" version))))
2743 (file-name (git-file-name name version))
2745 (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
2746 (build-system julia-build-system)
2747 (home-page "https://github.com/JuliaIO/MsgPack.jl")
2748 (synopsis "Julia MsgPack implementation")
2749 (description "@code{MsgPack.jl} is a MessagePack implementation in pure
2750 Julia, with type-driven, overloadable packing/unpacking functionality.")
2751 (license license:expat)))
2753 (define-public julia-mutablearithmetics
2755 (name "julia-mutablearithmetics")
2761 (url "https://github.com/jump-dev/MutableArithmetics.jl")
2762 (commit (string-append "v" version))))
2763 (file-name (git-file-name name version))
2765 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f"))))
2766 (build-system julia-build-system)
2768 `(("julia-offsetarrays" ,julia-offsetarrays)))
2769 (home-page "https://github.com/jump-dev/MutableArithmetics.jl")
2770 (synopsis "Interface for arithmetics on mutable types in Julia")
2771 (description "MutableArithmetics is a Julia package which allows:
2773 @item mutable types to implement mutable arithmetics
2774 @item algorithms that could exploit mutable arithmetics to exploit them while
2775 still being completely generic
2777 (license license:mpl2.0)))
2779 (define-public julia-nanmath
2781 (name "julia-nanmath")
2787 (url "https://github.com/mlubin/NaNMath.jl")
2788 (commit (string-append "v" version))))
2789 (file-name (git-file-name name version))
2791 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
2792 (build-system julia-build-system)
2793 (home-page "https://github.com/mlubin/NaNMath.jl")
2794 (synopsis "Implementations of basic math functions")
2795 (description "Implementations of basic math functions which return
2796 @code{NaN} instead of throwing a @code{DomainError}.")
2797 (license license:expat)))
2799 (define-public julia-nlsolversbase
2801 (name "julia-nlsolversbase")
2807 (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2808 (commit (string-append "v" version))))
2809 (file-name (git-file-name name version))
2811 (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98"))))
2812 (build-system julia-build-system)
2814 `(("julia-diffresults" ,julia-diffresults)
2815 ("julia-finitediff" ,julia-finitediff)
2816 ("julia-forwarddiff" ,julia-forwarddiff)))
2818 `(("julia-optimtestproblems" ,julia-optimtestproblems)
2819 ("julia-recursivearraytools" ,julia-recursivearraytools)))
2820 (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2821 (synopsis "Optimization and equation solver software in JuliaNLSolvers")
2822 (description "This package aims at establishing common ground for Optim.jl,
2823 LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to
2824 hold objective related callables, information about the objectives, and an
2825 interface to interact with these types.")
2826 (license license:expat)))
2828 (define-public julia-nnlib
2830 (name "julia-nnlib")
2836 (url "https://github.com/FluxML/NNlib.jl")
2837 (commit (string-append "v" version))))
2838 (file-name (git-file-name name version))
2840 (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
2841 (build-system julia-build-system)
2844 (modify-phases %standard-phases
2845 (add-after 'unpack 'skip-cuda-tests
2847 (substitute* "test/runtests.jl"
2849 (("&& CUDA\\.functional\\(\\)") ""))
2850 (setenv "NNLIB_TEST_CUDA" "false"))))))
2852 `(("julia-adapt" ,julia-adapt)
2853 ("julia-chainrulescore" ,julia-chainrulescore)
2854 ("julia-requires" ,julia-requires)))
2856 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
2857 ("julia-stablerngs" ,julia-stablerngs)
2858 ("julia-zygote" ,julia-zygote)))
2859 (home-page "https://github.com/FluxML/NNlib.jl")
2860 (synopsis "Neural Network primitives with multiple backends")
2861 (description "This package will provide a library of functions useful for
2862 machine learning, such as softmax, sigmoid, convolutions and pooling. It
2863 doesn't provide any other \"high-level\" functionality like layers or AD.")
2864 (license license:expat)))
2866 (define-public julia-optimtestproblems
2868 (name "julia-optimtestproblems")
2874 (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2875 (commit (string-append "v" version))))
2876 (file-name (git-file-name name version))
2878 (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
2879 (build-system julia-build-system)
2881 `(#:julia-package-name "OptimTestProblems"))
2882 (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2883 (synopsis "Collection of optimization test problems")
2884 (description "The purpose of this package is to provide test problems for
2885 JuliaNLSolvers packages.")
2886 (license license:expat)))
2888 (define-public julia-orderedcollections
2890 (name "julia-orderedcollections")
2896 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
2897 (commit (string-append "v" version))))
2898 (file-name (git-file-name name version))
2900 (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
2901 (build-system julia-build-system)
2902 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
2903 (synopsis "Associative containers that preserve insertion order")
2904 (description "This package implements @code{OrderedDicts} and
2905 @code{OrderedSets}, which are similar to containers in base Julia. However,
2906 during iteration the @code{Ordered*} containers return items in the order in
2907 which they were added to the collection.")
2908 (license license:expat)))
2910 (define-public julia-offsetarrays
2912 (name "julia-offsetarrays")
2918 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
2919 (commit (string-append "v" version))))
2920 (file-name (git-file-name name version))
2922 (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc"))))
2923 (build-system julia-build-system)
2925 `(("julia-adapt" ,julia-adapt)))
2926 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
2927 (arguments '(#:tests? #f))
2928 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
2929 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
2930 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
2931 have arbitrary indices, similar to those found in some other programming
2932 languages like Fortran.")
2933 (license license:expat)))
2935 (define-public julia-paddedviews
2937 (name "julia-paddedviews")
2943 (url "https://github.com/JuliaArrays/PaddedViews.jl")
2944 (commit (string-append "v" version))))
2945 (file-name (git-file-name name version))
2947 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h"))))
2948 (build-system julia-build-system)
2950 '(#:tests? #f)) ;require Documenter, not packaged yet
2952 `(("julia-offsetarrays" ,julia-offsetarrays)))
2953 (home-page "https://github.com/JuliaArrays/PaddedViews.jl")
2954 (synopsis "Add virtual padding to the edges of an array")
2955 (description "@code{PaddedViews} provides a simple wrapper type,
2956 @code{PaddedView}, to add \"virtual\" padding to any array without copying data.
2957 Edge values not specified by the array are assigned a @code{fillvalue}.
2958 Multiple arrays may be \"promoted\" to have common indices using the
2959 @code{paddedviews} function.")
2960 (license license:expat)))
2962 (define-public julia-parameters
2964 (name "julia-parameters")
2970 (url "https://github.com/mauro3/Parameters.jl")
2971 (commit (string-append "v" version))))
2972 (file-name (git-file-name name version))
2974 (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
2975 (build-system julia-build-system)
2977 `(("julia-orderedcollections" ,julia-orderedcollections)
2978 ("julia-unpack" ,julia-unpack)))
2979 (home-page "https://github.com/mauro3/Parameters.jl")
2980 (synopsis "Numerical-model parameter helpers")
2981 (description "This package contains types with default field values, keyword
2982 constructors and (un-)pack macros. Keyword functions can be slow in Julia,
2983 however, the normal positional constructor is also provided and could be used in
2984 performance critical code.")
2985 (license license:expat)))
2987 (define-public julia-parsers
2989 (name "julia-parsers")
2995 (url "https://github.com/JuliaData/Parsers.jl")
2996 (commit (string-append "v" version))))
2997 (file-name (git-file-name name version))
2999 (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
3000 (build-system julia-build-system)
3001 (home-page "https://github.com/JuliaData/Parsers.jl")
3002 (synopsis "Fast parsing machinery for basic types in Julia")
3003 (description "@code{Parsers.jl} is a collection of type parsers and
3004 utilities for Julia.")
3005 (license license:expat)))
3007 (define-public julia-pdmats
3009 (name "julia-pdmats")
3015 (url "https://github.com/JuliaStats/PDMats.jl")
3016 (commit (string-append "v" version))))
3017 (file-name (git-file-name name version))
3019 (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0"))))
3020 (build-system julia-build-system)
3021 (home-page "https://github.com/JuliaStats/PDMats.jl")
3023 "Uniform Interface for positive definite matrices of various structures")
3024 (description "PDMats.jl supports efficient computation on positive definite
3025 matrices of various structures. In particular, it provides uniform interfaces
3026 to use positive definite matrices of various structures for writing generic
3027 algorithms, while ensuring that the most efficient implementation is used in
3028 actual computation.")
3029 (license license:expat)))
3031 (define-public julia-plotthemes
3033 (name "julia-plotthemes")
3039 (url "https://github.com/JuliaPlots/PlotThemes.jl")
3040 (commit (string-append "v" version))))
3041 (file-name (git-file-name name version))
3043 (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh"))))
3044 (build-system julia-build-system)
3046 `(("julia-plotutils" ,julia-plotutils)
3047 ("julia-requires" ,julia-requires)))
3048 (home-page "https://github.com/JuliaPlots/PlotThemes.jl")
3049 (synopsis "Themes for the Julia plotting package Plots.jl")
3051 "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.")
3052 (license license:expat)))
3054 (define-public julia-plotutils
3056 (name "julia-plotutils")
3062 (url "https://github.com/JuliaPlots/PlotUtils.jl")
3063 (commit (string-append "v" version))))
3064 (file-name (git-file-name name version))
3066 (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105"))))
3067 (build-system julia-build-system)
3069 `(("julia-colors" ,julia-colors)
3070 ("julia-colorschemes" ,julia-colorschemes)
3071 ("julia-reexport" ,julia-reexport)))
3073 `(("julia-stablerngs" ,julia-stablerngs)))
3074 (home-page "https://github.com/JuliaPlots/PlotUtils.jl")
3075 (synopsis "Helper algorithms for building plotting components")
3076 (description "This package contains generic helper algorithms for building
3077 plotting components.")
3078 (license license:expat)))
3080 (define-public julia-pooledarrays
3082 (name "julia-pooledarrays")
3088 (url "https://github.com/JuliaData/PooledArrays.jl")
3089 (commit (string-append "v" version))))
3090 (file-name (git-file-name name version))
3092 (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr"))))
3093 (build-system julia-build-system)
3095 `(("julia-dataapi" ,julia-dataapi)))
3096 (home-page "https://github.com/JuliaData/PooledArrays.jl")
3097 (synopsis "Pooled representation of arrays in Julia")
3098 (description "This package provides a pooled representation of arrays for
3099 purposes of compression when there are few unique elements.")
3100 (license license:expat)))
3102 (define-public julia-positivefactorizations
3104 (name "julia-positivefactorizations")
3110 (url "https://github.com/timholy/PositiveFactorizations.jl")
3111 (commit (string-append "v" version))))
3112 (file-name (git-file-name name version))
3114 (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23"))))
3115 (build-system julia-build-system)
3117 `(("julia-forwarddiff" ,julia-forwarddiff)
3118 ("julia-reversediff" ,julia-reversediff)))
3119 (home-page "https://github.com/timholy/PositiveFactorizations.jl")
3120 (synopsis "Positive-definite \"approximations\" to matrices")
3121 (description "@code{PositiveFactorizations} is a package for computing a
3122 positive definite matrix decomposition (factorization) from an arbitrary
3123 symmetric input. The motivating application is optimization (Newton or
3124 quasi-Newton methods), in which the canonical search direction -H/g (H being the
3125 Hessian and g the gradient) may not be a descent direction if H is not positive
3127 (license license:expat)))
3129 (define-public julia-preferences
3131 (name "julia-preferences")
3137 (url "https://github.com/JuliaPackaging/Preferences.jl")
3138 (commit (string-append "v" version))))
3139 (file-name (git-file-name name version))
3141 (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
3142 (build-system julia-build-system)
3144 `(#:tests? #f)) ; Tests try to mkdir /.julia
3145 (home-page "https://github.com/JuliaPackaging/Preferences.jl")
3146 (synopsis "Store configuration switches to TOML files")
3147 (description "The @code{Preferences} package provides an integrated way for
3148 packages to store configuration switches to persistent TOML files, and use those
3149 pieces of information at both run time and compile time in Julia. This enables
3150 the user to modify the behavior of a package, and have that choice reflected in
3151 everything from run time algorithm choice to code generation at compile time.")
3152 (license license:expat)))
3154 (define-public julia-prettytables
3156 (name "julia-prettytables")
3162 (url "https://github.com/ronisbr/PrettyTables.jl")
3163 (commit (string-append "v" version))))
3164 (file-name (git-file-name name version))
3166 (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
3167 (build-system julia-build-system)
3170 (modify-phases %standard-phases
3171 (add-after 'unpack 'skip-color-tests
3173 (substitute* "test/text_backend.jl"
3174 ((".*colors\\.jl.*") ""))
3177 `(("julia-crayons" ,julia-crayons)
3178 ("julia-formatting" ,julia-formatting)
3179 ("julia-reexport" ,julia-reexport)
3180 ("julia-tables" ,julia-tables)))
3181 (home-page "https://github.com/ronisbr/PrettyTables.jl")
3182 (synopsis "Print data in formatted tables")
3183 (description "This package has the purpose to print data in matrices in a
3184 human-readable format.")
3185 (license license:expat)))
3187 (define-public julia-pycall
3189 (name "julia-pycall")
3195 (url "https://github.com/JuliaPy/PyCall.jl")
3196 (commit (string-append "v" version))))
3197 (file-name (git-file-name name version))
3200 "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq"))))
3201 (build-system julia-build-system)
3203 `(#:imported-modules ((guix build python-build-system)
3204 ,@%julia-build-system-modules)
3205 #:modules ((guix build julia-build-system)
3207 ((guix build python-build-system) #:prefix python:))
3209 (modify-phases %standard-phases
3210 (add-after 'unpack 'remove-conda
3212 (substitute* "Project.toml"
3214 (substitute* (list "src/PyCall.jl"
3216 (("import Conda") ""))
3217 (substitute* "deps/depsutils.jl"
3218 (("Conda.PYTHONDIR") "\"/\""))
3220 (add-after 'unpack 'set-python
3221 (lambda* (#:key inputs outputs #:allow-other-keys)
3222 (let ((python (assoc-ref inputs "python")))
3223 (setenv "PYCALL_JL_RUNTIME_PYTHON"
3224 (string-append python "/bin/python3"))
3225 (with-output-to-file "deps/deps.jl"
3228 "const python = \"~a/bin/python3\"~@
3229 const pyprogramname = \"~a/bin/python3\"~@
3230 const libpython = \"~a/lib/libpython~a.so.1.0\"~@
3231 const PYTHONHOME = \"~a\"~@
3232 const pyversion_build = v\"~a\"~@
3233 const conda = false~%"
3237 (python:python-version python)
3239 ,(package-version python))))
3241 (add-before 'check 'pre-check
3243 (setenv "CI" "true")
3244 (setenv "JULIA_PKGEVAL" "true")
3247 `(("julia-macrotools" ,julia-macrotools)
3248 ("julia-versionparsing" ,julia-versionparsing)))
3250 `(("python" ,python)))
3252 `(("python-numpy" ,python-numpy)))
3253 (home-page "https://github.com/JuliaPy/PyCall.jl")
3254 (synopsis "Call Python functions from the Julia language")
3255 (description "This package provides the ability to directly call and fully
3256 interoperate with Python from the Julia language. You can import arbitrary
3257 Python modules from Julia, call Python functions (with automatic conversion of
3258 types between Julia and Python), define Python classes from Julia methods, and
3259 share large data structures between Julia and Python without copying them.")
3260 (license license:expat)))
3262 (define-public julia-quadgk
3264 (name "julia-quadgk")
3270 (url "https://github.com/JuliaMath/QuadGK.jl")
3271 (commit (string-append "v" version))))
3272 (file-name (git-file-name name version))
3274 (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
3275 (build-system julia-build-system)
3277 `(("julia-datastructures" ,julia-datastructures)))
3278 (home-page "https://github.com/JuliaMath/QuadGK.jl")
3279 (synopsis "Adaptive 1d numerical Gauss–Kronrod integration")
3280 (description "This package provides support for one-dimensional numerical
3281 integration in Julia using adaptive Gauss-Kronrod quadrature. The code was
3282 originally part of Base Julia. It supports integration of arbitrary numeric
3283 types, including arbitrary precision (@code{BigFloat}), and even integration of
3284 arbitrary normed vector spaces (e.g. matrix-valued integrands).")
3285 (license license:expat)))
3287 (define-public julia-quadmath
3289 (name "julia-quadmath")
3295 (url "https://github.com/JuliaMath/Quadmath.jl")
3296 (commit (string-append "v" version))))
3297 (file-name (git-file-name name version))
3299 (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
3300 (build-system julia-build-system)
3303 (modify-phases %standard-phases
3304 (add-after 'unpack 'hardcode-libmath-location
3305 (lambda* (#:key inputs #:allow-other-keys)
3306 (let ((gcclib (assoc-ref inputs "gcc:lib")))
3307 (substitute* "src/Quadmath.jl"
3308 (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
3309 (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
3312 `(("julia-requires" ,julia-requires)))
3314 `(("gcc:lib" ,gcc "lib")))
3316 `(("julia-specialfunctions" ,julia-specialfunctions)))
3317 (home-page "https://github.com/JuliaMath/Quadmath.jl")
3318 (synopsis "Float128 and libquadmath for the Julia language")
3319 (description "This is a Julia interface to @code{libquadmath}, providing a
3320 @code{Float128} type corresponding to the IEEE754 binary128 floating point
3322 (license license:expat)))
3324 (define-public julia-quaternions
3326 (name "julia-quaternions")
3332 (url "https://github.com/JuliaGeometry/Quaternions.jl")
3333 (commit (string-append "v" version))))
3334 (file-name (git-file-name name version))
3336 (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s"))))
3337 (build-system julia-build-system)
3339 `(("julia-dualnumbers" ,julia-dualnumbers)))
3340 (home-page "https://github.com/JuliaGeometry/Quaternions.jl")
3341 (synopsis "Quaternion and dual-quaternion functionality")
3342 (description "Quaternions are best known for their suitability as
3343 representations of 3D rotational orientation. They can also be viewed as an
3344 extension of complex numbers.")
3345 (license license:expat)))
3347 (define-public julia-queryoperators
3349 (name "julia-queryoperators")
3355 (url "https://github.com/queryverse/QueryOperators.jl")
3356 (commit (string-append "v" version))))
3357 (file-name (git-file-name name version))
3359 (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22"))))
3360 (build-system julia-build-system)
3362 `(("julia-datastructures" ,julia-datastructures)
3363 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3364 ("julia-tableshowutils" ,julia-tableshowutils)))
3365 (home-page "https://github.com/queryverse/QueryOperators.jl")
3366 (synopsis "Query operators for Julia")
3367 (description "This package contains the underlying query operators that are
3368 exposed to users in @code{Query.jl}.")
3369 (license license:expat)))
3371 (define-public julia-rangearrays
3373 (name "julia-rangearrays")
3379 (url "https://github.com/JuliaArrays/RangeArrays.jl")
3380 (commit (string-append "v" version))))
3381 (file-name (git-file-name name version))
3383 (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg"))))
3384 (build-system julia-build-system)
3385 (home-page "https://github.com/JuliaArrays/RangeArrays.jl")
3386 (synopsis "Array data structures with autogenerated columns")
3387 (description "The goal of RangeArrays is to provide efficient and convenient
3388 array data structures where the columns of the arrays are generated (on the fly)
3390 (license license:expat)))
3392 (define-public julia-ratios
3394 (name "julia-ratios")
3400 (url "https://github.com/timholy/Ratios.jl")
3401 (commit (string-append "v" version))))
3402 (file-name (git-file-name name version))
3404 (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh"))))
3405 (build-system julia-build-system)
3406 (home-page "https://github.com/timholy/Ratios.jl")
3407 (synopsis "Faster Rational-like types for Julia")
3408 (description "This package provides types similar to Julia's @code{Rational}
3409 type, which make some sacrifices but have better computational performance.")
3410 (license license:expat)))
3412 (define-public julia-recipesbase
3414 (name "julia-recipesbase")
3420 (url "https://github.com/JuliaPlots/RecipesBase.jl")
3421 (commit (string-append "v" version))))
3422 (file-name (git-file-name name version))
3424 (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
3425 (build-system julia-build-system)
3426 (home-page "https://github.com/JuliaPlots/RecipesBase.jl")
3427 (synopsis "Define transformation recipes on user types")
3428 (description "This package implements handy macros @code{@@recipe} and
3429 @code{@@series} which will define a custom transformation and attach attributes
3430 for user types. Its design is an attempt to simplify and generalize the summary
3431 and display of types and data from external packages. With this package it is
3432 possible to describe visualization routines that can be used as components in
3433 more complex visualizations.")
3434 (license license:expat)))
3436 (define-public julia-recipespipeline
3438 (name "julia-recipespipeline")
3444 (url "https://github.com/JuliaPlots/RecipesPipeline.jl")
3445 (commit (string-append "v" version))))
3446 (file-name (git-file-name name version))
3448 (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7"))))
3449 (build-system julia-build-system)
3451 `(#:tests? #f)) ; Cycle with Plots.jl.
3453 `(("julia-nanmath" ,julia-nanmath)
3454 ("julia-plotutils" ,julia-plotutils)
3455 ("julia-recipesbase" ,julia-recipesbase)))
3456 (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/")
3457 (synopsis "Utilities for processing recipes")
3458 (description "This package was factored out of @code{Plots.jl} to allow any
3459 other plotting package to use the recipe pipeline. In short, the extremely
3460 lightweight @code{RecipesBase.jl} package can be depended on by any package to
3461 define \"recipes\": plot specifications of user-defined types, as well as custom
3462 plot types. @code{RecipePipeline.jl} contains the machinery to translate these
3463 recipes to full specifications for a plot.")
3464 (license license:expat)))
3466 (define-public julia-recursivearraytools
3468 (name "julia-recursivearraytools")
3474 (url "https://github.com/SciML/RecursiveArrayTools.jl")
3475 (commit (string-append "v" version))))
3476 (file-name (git-file-name name version))
3478 (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
3479 (build-system julia-build-system)
3481 `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
3483 `(("julia-arrayinterface" ,julia-arrayinterface)
3484 ("julia-chainrulescore" ,julia-chainrulescore)
3485 ("julia-docstringextensions" ,julia-docstringextensions)
3486 ("julia-recipesbase" ,julia-recipesbase)
3487 ("julia-requires" ,julia-requires)
3488 ("julia-staticarrays" ,julia-staticarrays)
3489 ("julia-zygoterules" ,julia-zygoterules)))
3491 ; `(("julia-forwarddiff" ,julia-forwarddiff)
3492 ; ("julia-nlsolve" ,julia-nlsolve)
3493 ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq)
3494 ; ("julia-structarrays" ,julia-structarrays)
3495 ; ("julia-zygote" ,julia-zygote)))
3496 (home-page "https://github.com/SciML/RecursiveArrayTools.jl")
3497 (synopsis "Tools for handling objects like arrays of arrays and deeper nestings")
3498 (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with
3499 recursive arrays like arrays of arrays.")
3500 (license license:expat)))
3502 (define-public julia-reexport
3504 (name "julia-reexport")
3510 (url "https://github.com/simonster/Reexport.jl")
3511 (commit (string-append "v" version))))
3512 (file-name (git-file-name name version))
3514 (base32 "0inf5q6f01ncd5c5wm8mwzv2hs627ng6xlh8dhrlflp321hbamwf"))))
3515 (build-system julia-build-system)
3516 (home-page "https://github.com/simonster/Reexport.jl")
3517 (synopsis "Re-export modules and symbols")
3518 (description "This package provides tools to re-export modules and symbols.")
3519 (license license:expat)))
3521 (define-public julia-referencetests
3523 (name "julia-referencetests")
3529 (url "https://github.com/JuliaTesting/ReferenceTests.jl")
3530 (commit (string-append "v" version))))
3531 (file-name (git-file-name name version))
3533 (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
3534 (build-system julia-build-system)
3536 `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
3538 `(("julia-deepdiffs" ,julia-deepdiffs)
3539 ("julia-distances" ,julia-distances)
3540 ("julia-fileio" ,julia-fileio)
3541 ("julia-imagecore" ,julia-imagecore)
3542 ("julia-imageinterminal" ,julia-imageinterminal)))
3544 ; `(("julia-csvfiles" ,julia-csvfiles)
3545 ; ("julia-dataframes" ,julia-dataframes)
3546 ; ("julia-gr" ,julia-gr)
3547 ; ("julia-imagemagick" ,julia-imagemagick)
3548 ; ("julia-imagetransformations" ,julia-imagetransformations)
3549 ; ("julia-plots" ,julia-plots)
3550 ; ("julia-testimages" ,julia-testimages)))
3551 (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/")
3552 (synopsis "Utility package for comparing data against reference files")
3553 (description "@code{ReferenceTests.jl} is a Julia package that adds a couple
3554 of additional macros to your testing toolbox. In particular, it focuses on
3555 functionality for testing values against reference files, which in turn the
3556 package can help create and update if need be.")
3557 (license license:expat)))
3559 (define-public julia-requires
3561 (name "julia-requires")
3567 (url "https://github.com/JuliaPackaging/Requires.jl/")
3568 (commit (string-append "v" version))))
3569 (file-name (git-file-name name version))
3571 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
3572 (build-system julia-build-system)
3573 (inputs ;required for test
3574 `(("julia-example" ,julia-example)))
3576 `(("julia-colors" ,julia-colors)))
3577 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
3578 (synopsis "Faster package loader")
3579 (description "This package make loading packages faster, maybe. It
3580 supports specifying glue code in packages which will load automatically when
3581 another package is loaded, so that explicit dependencies (and long load times)
3583 (license license:expat)))
3585 (define-public julia-reversediff
3587 (name "julia-reversediff")
3593 (url "https://github.com/JuliaDiff/ReverseDiff.jl")
3594 (commit (string-append "v" version))))
3595 (file-name (git-file-name name version))
3597 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl"))))
3598 (build-system julia-build-system)
3600 `(("julia-diffresults" ,julia-diffresults)
3601 ("julia-diffrules" ,julia-diffrules)
3602 ("julia-forwarddiff" ,julia-forwarddiff)
3603 ("julia-functionwrappers" ,julia-functionwrappers)
3604 ("julia-macrotools" ,julia-macrotools)
3605 ("julia-nanmath" ,julia-nanmath)
3606 ("julia-specialfunctions" ,julia-specialfunctions)
3607 ("julia-staticarrays" ,julia-staticarrays)))
3609 `(("julia-difftests" ,julia-difftests)
3610 ("julia-fillarrays" ,julia-fillarrays)))
3611 (home-page "https://github.com/JuliaDiff/ReverseDiff.jl")
3612 (synopsis "Reverse Mode Automatic Differentiation for Julia")
3613 (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based
3614 reverse mode @acronym{AD, automatic differentiation}, that implements methods to
3615 take gradients, Jacobians, Hessians, and higher-order derivatives of native
3616 Julia functions (or any callable object, really).")
3617 (license license:expat)))
3619 (define-public julia-richardson
3621 (name "julia-richardson")
3627 (url "https://github.com/JuliaMath/Richardson.jl")
3628 (commit (string-append "v" version))))
3629 (file-name (git-file-name name version))
3631 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
3632 (build-system julia-build-system)
3633 (home-page "https://juliapackages.com/p/richardson")
3634 (synopsis "Extrapolate function using Richardson method")
3635 (description "This package provides a function extrapolate that
3636 extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
3637 only at a geometric sequence of points @code{> x0} (or optionally @code{<
3638 x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
3639 tableau, which adaptively increases the degree of an extrapolation polynomial
3640 until convergence is achieved to a desired tolerance (or convergence stalls
3641 due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
3642 high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
3643 other power series in @code{h}.")
3644 (license license:expat)))
3646 (define-public julia-rotations
3647 ;; This is the first commit with support for julia-1.6.
3648 (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788")
3651 (name "julia-rotations")
3652 (version (git-version "1.0.2" revision commit))
3657 (url "https://github.com/JuliaGeometry/Rotations.jl")
3659 (file-name (git-file-name name version))
3661 (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19"))))
3662 (build-system julia-build-system)
3664 `(("julia-staticarrays" ,julia-staticarrays)))
3666 `(("julia-benchmarktools" ,julia-benchmarktools)
3667 ("julia-forwarddiff" ,julia-forwarddiff)
3668 ("julia-unitful" ,julia-unitful)))
3669 (home-page "https://github.com/JuliaGeometry/Rotations.jl")
3670 (synopsis "Julia implementations for different rotation parameterisations")
3671 (description "This package implements various 3D rotation parameterizations
3672 and defines conversions between them. At their heart, each rotation
3673 parameterization is a 3×3 unitary (orthogonal) matrix (based on the
3674 @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin
3675 through matrix-vector multiplication.")
3676 (license license:expat))))
3678 (define-public julia-safetestsets
3679 ;; The only release tag is the first commit in the repository.
3680 (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
3683 (name "julia-safetestsets")
3684 (version (git-version "0.0.1" revision commit))
3689 (url "https://github.com/YingboMa/SafeTestsets.jl")
3691 (file-name (git-file-name name version))
3693 (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
3694 (build-system julia-build-system)
3696 `(#:julia-package-name "SafeTestsets"))
3698 `(("julia-staticarrays" ,julia-staticarrays)))
3699 (home-page "https://github.com/YingboMa/SafeTestsets.jl")
3700 (synopsis "Julia's testset in a module")
3701 (description "This package contains the testset from Julia, packaged into
3702 a loadable module.")
3703 (license license:expat))))
3705 (define-public julia-sass
3713 (url "https://github.com/piever/Sass.jl")
3714 (commit (string-append "v" version))))
3715 (file-name (git-file-name name version))
3717 (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
3718 (build-system julia-build-system)
3720 `(("julia-libsass-jll" ,julia-libsass-jll)))
3721 (home-page "https://github.com/piever/Sass.jl")
3722 (synopsis "Compile scss and sass file to css")
3723 (description "This package provides a simple Julian API to use the
3724 @code{libsass} library to compile scss and sass files to css.")
3725 (license license:expat)))
3727 (define-public julia-scratch
3729 (name "julia-scratch")
3735 (url "https://github.com/JuliaPackaging/Scratch.jl")
3736 (commit (string-append "v" version))))
3737 (file-name (git-file-name name version))
3740 "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
3741 (build-system julia-build-system)
3743 `(#:tests? #f)) ; Test suite tries to access the Julia package registry.
3744 (home-page "https://github.com/JuliaPackaging/Scratch.jl")
3745 (synopsis "Scratch spaces for all your persistent mutable data needs")
3746 (description "This repository implements the scratch spaces API for
3747 package-specific mutable containers of data. These spaces can contain datasets,
3748 text, binaries, or any other kind of data that would be convenient to store in
3749 a location specific to your package. As compared to Artifacts, these containers
3750 of data are mutable. Because the scratch space location on disk is not very
3751 user-friendly, scratch spaces should, in general, not be used for a storing
3752 files that the user must interact with through a file browser.")
3753 (license license:expat)))
3755 (define-public julia-showoff
3757 (name "julia-showoff")
3763 (url "https://github.com/JuliaGraphics/Showoff.jl")
3764 (commit (string-append "v" version))))
3765 (file-name (git-file-name name version))
3767 (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53"))))
3768 (build-system julia-build-system)
3769 (home-page "https://github.com/JuliaGraphics/Showoff.jl")
3770 (synopsis "Nicely format an array of n things for tables and plots")
3771 (description "@code{Showoff} provides an interface for consistently
3772 formatting an array of n things, e.g. numbers, dates, unitful values. It's used
3773 in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.")
3774 (license license:expat)))
3776 (define-public julia-simpletraits
3778 (name "julia-simpletraits")
3784 (url "https://github.com/mauro3/SimpleTraits.jl")
3785 (commit (string-append "v" version))))
3786 (file-name (git-file-name name version))
3788 (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05"))))
3789 (build-system julia-build-system)
3791 `(("julia-macrotools" ,julia-macrotools)))
3792 (home-page "https://github.com/mauro3/SimpleTraits.jl")
3793 (synopsis "Simple Traits for Julia")
3794 (description "This package provides a macro-based implementation of traits.
3795 The main idea behind traits is to group types outside the type-hierarchy and to
3796 make dispatch work with that grouping. The difference to Union-types is that
3797 types can be added to a trait after the creation of the trait, whereas Union
3798 types are fixed after creation.")
3799 (license license:expat)))
3801 (define-public julia-sortingalgorithms
3803 (name "julia-sortingalgorithms")
3809 (url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3810 (commit (string-append "v" version))))
3811 (file-name (git-file-name name version))
3813 (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb"))))
3814 (build-system julia-build-system)
3816 `(#:tests? #f)) ; cycle with StatsBase.jl
3818 `(("julia-datastructures" ,julia-datastructures)))
3820 ; `(("julia-statsbase" ,julia-statsbase)))
3821 (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3822 (synopsis "Extra sorting algorithms extending Julia's sorting API")
3823 (description "The SortingAlgorithms package provides three sorting
3824 algorithms that can be used with Julia's standard sorting API: heapsort,
3825 timsort and radixsort.")
3826 (license license:expat)))
3828 (define-public julia-specialfunctions
3830 (name "julia-specialfunctions")
3836 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
3837 (commit (string-append "v" version))))
3838 (file-name (git-file-name name version))
3840 (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0"))))
3841 (build-system julia-build-system)
3843 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
3845 `(("julia-chainrulescore" ,julia-chainrulescore)
3846 ("julia-logexpfunctions" ,julia-logexpfunctions)
3847 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
3848 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
3849 (synopsis "Special mathematical functions")
3850 (description "This package provides special mathematical functions,
3851 including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
3852 cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
3853 polygamma functions.")
3854 (license license:expat)))
3856 (define-public julia-splitapplycombine
3858 (name "julia-splitapplycombine")
3864 (url "https://github.com/JuliaData/SplitApplyCombine.jl")
3865 (commit (string-append "v" version))))
3866 (file-name (git-file-name name version))
3868 (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x"))))
3869 (build-system julia-build-system)
3871 `(("julia-dictionaries" ,julia-dictionaries)
3872 ("julia-indexing" ,julia-indexing)))
3873 (home-page "https://github.com/JuliaData/SplitApplyCombine.jl")
3874 (synopsis "Split-apply-combine strategies for Julia")
3875 (description "@code{SplitApplyCombine.jl} provides high-level, generic tools
3876 for manipulating data - particularly focussing on data in nested containers. An
3877 emphasis is placed on ensuring split-apply-combine strategies are easy to apply,
3878 and work reliably for arbitrary iterables and in an optimized way with the data
3879 structures included in Julia's standard library.")
3880 (license license:expat)))
3882 (define-public julia-stablerngs
3884 (name "julia-stablerngs")
3890 (url "https://github.com/JuliaRandom/StableRNGs.jl")
3891 (commit (string-append "v" version))))
3892 (file-name (git-file-name name version))
3894 (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
3895 (build-system julia-build-system)
3896 (home-page "https://github.com/JuliaRandom/StableRNGs.jl")
3897 (synopsis "Julia RNG with stable streams")
3898 (description "This package intends to provide a simple RNG with stable
3899 streams, suitable for tests in packages which need reproducible streams of
3900 random numbers across Julia versions. Indeed, the Julia RNGs provided by
3901 default are documented to have non-stable streams (which for example enables
3902 some performance improvements).")
3903 (license license:expat)))
3905 (define-public julia-stackviews
3907 (name "julia-stackviews")
3913 (url "https://github.com/JuliaArrays/StackViews.jl")
3914 (commit (string-append "v" version))))
3915 (file-name (git-file-name name version))
3917 (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
3918 (build-system julia-build-system)
3920 `(#:tests? #f ; Documenter.jl not packaged yet
3922 (modify-phases %standard-phases
3923 (add-after 'unpack 'skip-doctest
3925 (substitute* "test/runtests.jl"
3926 ((".*doctest.*") ""))
3929 `(("julia-offsetarrays" ,julia-offsetarrays)))
3931 ; `(("julia-aqua" ,julia-aqua)
3932 ; ("julia-documenter" ,julia-documenter)))
3933 (home-page "https://github.com/JuliaArrays/StackViews.jl")
3934 (synopsis "No more catcat")
3935 (description "StackViews provides only one array type: @code{StackView}.
3936 There are multiple ways to understand @code{StackView}:
3938 @item inverse of @code{eachslice}
3939 @item @code{cat} variant
3941 @item lazy version of @code{repeat} special case
3943 (license license:expat)))
3945 (define-public julia-static
3947 (name "julia-static")
3953 (url "https://github.com/SciML/Static.jl")
3954 (commit (string-append "v" version))))
3955 (file-name (git-file-name name version))
3957 (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2"))))
3958 (build-system julia-build-system)
3960 `(("julia-ifelse" ,julia-ifelse)))
3962 `(("julia-aqua" ,julia-aqua)))
3963 (home-page "https://github.com/SciML/Static.jl")
3964 (synopsis "Static types useful for dispatch and generated functions")
3965 (description "Static.jl defines a limited set of statically parameterized
3966 types and a common interface that is shared between them.")
3967 (license license:expat)))
3969 (define-public julia-staticarrays
3971 (name "julia-staticarrays")
3977 (url "https://github.com/JuliaArrays/StaticArrays.jl")
3978 (commit (string-append "v" version))))
3979 (file-name (git-file-name name version))
3981 (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79"))))
3982 (build-system julia-build-system)
3984 `(("julia-benchmarktools" ,julia-benchmarktools)))
3985 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
3986 (synopsis "Statically sized arrays")
3987 (description "This package provides a framework for implementing
3988 statically sized arrays in Julia, using the abstract type
3989 @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
3990 @code{StaticArray} will provide fast implementations of common array and
3991 linear algebra operations.")
3992 (license license:expat)))
3994 (define-public julia-statsapi
3996 (name "julia-statsapi")
4002 (url "https://github.com/JuliaStats/StatsAPI.jl")
4003 (commit (string-append "v" version))))
4004 (file-name (git-file-name name version))
4006 (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv"))))
4007 (build-system julia-build-system)
4008 (home-page "https://juliastats.org/")
4009 (synopsis "Statistics-focused namespace for packages to share functions")
4010 (description "This package provides a namespace for data-related generic
4011 function definitions to solve the optional dependency problem; packages wishing
4012 to share and/or extend functions can avoid depending directly on each other by
4013 moving the function definition to @code{StatsAPI.jl} and each package taking a
4015 (license license:expat)))
4017 (define-public julia-statsbase
4019 (name "julia-statsbase")
4025 (url "https://github.com/JuliaStats/StatsBase.jl")
4026 (commit (string-append "v" version))))
4027 (file-name (git-file-name name version))
4029 (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi"))))
4030 (build-system julia-build-system)
4032 `(("julia-dataapi" ,julia-dataapi)
4033 ("julia-datastructures" ,julia-datastructures)
4034 ("julia-missings" ,julia-missings)
4035 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
4036 ("julia-statsapi" ,julia-statsapi)))
4038 `(("julia-stablerngs" ,julia-stablerngs)))
4039 (home-page "https://github.com/JuliaStats/StatsBase.jl")
4040 (synopsis "Basic statistics for Julia")
4041 (description "StatsBase.jl is a Julia package that provides basic support
4042 for statistics. Particularly, it implements a variety of statistics-related
4043 functions, such as scalar statistics, high-order moment computation, counting,
4044 ranking, covariances, sampling, and empirical density estimation.")
4045 (license license:expat)))
4047 (define-public julia-stringdistances
4049 (name "julia-stringdistances")
4055 (url "https://github.com/matthieugomez/StringDistances.jl")
4056 (commit (string-append "v" version))))
4057 (file-name (git-file-name name version))
4059 (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7"))))
4060 (build-system julia-build-system)
4062 `(("julia-distances" ,julia-distances)))
4063 (home-page "https://github.com/matthieugomez/StringDistances.jl")
4064 (synopsis "String Distances in Julia")
4065 (description "This package provides string distances in Julia. Distances
4066 are defined for @code{AbstractStrings}, and any iterator that define
4067 @code{length()}. The package also defines Distance \"modifiers\" that can be
4068 applied to any distance.")
4069 (license license:expat)))
4071 (define-public julia-structtypes
4073 (name "julia-structtypes")
4079 (url "https://github.com/JuliaData/StructTypes.jl")
4080 (commit (string-append "v" version))))
4081 (file-name (git-file-name name version))
4083 (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
4084 (build-system julia-build-system)
4085 (home-page "https://juliadata.github.io/StructTypes.jl/stable/")
4086 (synopsis "Abstract definitions and convenience methods for Julia objects")
4087 (description "This package provides the @code{StructTypes.StructType} trait
4088 for Julia types to declare the kind of \"struct\" they are, providing
4089 serialization/deserialization packages patterns and strategies to automatically
4090 construct objects.")
4091 (license license:expat)))
4093 (define-public julia-suppressor
4095 (name "julia-suppressor")
4101 (url "https://github.com/JuliaIO/Suppressor.jl")
4102 (commit (string-append "v" version))))
4103 (file-name (git-file-name name version))
4105 (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
4106 (build-system julia-build-system)
4107 (home-page "https://github.com/JuliaIO/Suppressor.jl")
4108 (synopsis "Capture stdout and sterr")
4109 (description "Julia macros for suppressing and/or capturing output (stdout),
4110 warnings (stderr) or both streams at the same time.")
4111 (license license:expat)))
4113 (define-public julia-tableiointerface
4115 (name "julia-tableiointerface")
4121 (url "https://github.com/lungben/TableIOInterface.jl")
4122 (commit (string-append "v" version))))
4123 (file-name (git-file-name name version))
4125 (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"))))
4126 (build-system julia-build-system)
4127 (home-page "https://github.com/lungben/TableIOInterface.jl")
4128 (synopsis "File formats based on file extensions")
4129 (description "This package determines tabular file formats based on file
4130 extensions. It is intended to be the base both for @code{TableIO.jl} and for
4131 the @code{Pluto.jl} tabular data import functionality.")
4132 (license license:expat)))
4134 (define-public julia-tables
4136 (name "julia-tables")
4142 (url "https://github.com/JuliaData/Tables.jl")
4143 (commit (string-append "v" version))))
4144 (file-name (git-file-name name version))
4146 (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb"))))
4147 (build-system julia-build-system)
4149 `(("julia-dataapi" ,julia-dataapi)
4150 ("julia-datavalueinterfaces" ,julia-datavalueinterfaces)
4151 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
4152 ("julia-tabletraits" ,julia-tabletraits)))
4154 `(("julia-datavalues" ,julia-datavalues)
4155 ("julia-queryoperators" ,julia-queryoperators)))
4156 (home-page "https://github.com/JuliaData/Tables.jl")
4157 (synopsis "Interface for tables in Julia")
4158 (description "The @code{Tables.jl} package provides simple, yet powerful
4159 interface functions for working with all kinds tabular data.")
4160 (license license:expat)))
4162 (define-public julia-tableshowutils
4163 ;; The 0.2.5 release is not fully compatable with newer versions of Julia.
4164 (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460")
4167 (name "julia-tableshowutils")
4173 (url "https://github.com/queryverse/TableShowUtils.jl")
4175 (file-name (git-file-name name version))
4177 (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5"))))
4178 (build-system julia-build-system)
4180 `(("julia-datavalues" ,julia-datavalues)
4181 ("julia-json" ,julia-json)))
4182 (home-page "https://github.com/queryverse/TableShowUtils.jl")
4183 (synopsis "Implement show for TableTraits.jl types")
4184 (description "This package provides some common helper functions that make
4185 it easier to implement various @code{Base.show} functions for types that
4186 participate in the @code{TableTraits.jl} ecosystem.")
4187 (license license:expat))))
4189 (define-public julia-tabletraits
4191 (name "julia-tabletraits")
4197 (url "https://github.com/queryverse/TableTraits.jl")
4198 (commit (string-append "v" version))))
4199 (file-name (git-file-name name version))
4201 (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"))))
4202 (build-system julia-build-system)
4204 `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)))
4205 (home-page "https://github.com/queryverse/TableTraits.jl")
4206 (synopsis "Traits for Julia tables")
4207 (description "TableTraits defines a generic interface for tabular data.")
4208 (license license:expat)))
4210 (define-public julia-tensorcore
4212 (name "julia-tensorcore")
4218 (url "https://github.com/JuliaMath/TensorCore.jl")
4219 (commit (string-append "v" version))))
4220 (file-name (git-file-name name version))
4222 (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy"))))
4223 (build-system julia-build-system)
4224 (home-page "https://github.com/JuliaMath/TensorCore.jl")
4225 (synopsis "Tensor-algebra definitions")
4226 (description "This package is intended as a lightweight foundation for
4227 tensor operations across the Julia ecosystem. Currently it exports three
4228 operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor,
4229 product preserves all dimensions}, and @acronym{boxdot, contracts neighboring
4231 (license license:expat)))
4233 (define-public julia-testimages
4235 (name "julia-testimages")
4241 (url "https://github.com/JuliaImages/TestImages.jl")
4242 (commit (string-append "v" version))))
4243 (file-name (git-file-name name version))
4245 (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
4246 (build-system julia-build-system)
4248 `(#:tests? #f)) ; cycle with ImageMagick.jl
4250 `(("julia-axisarrays" ,julia-axisarrays)
4251 ("julia-colortypes" ,julia-colortypes)
4252 ("julia-fileio" ,julia-fileio)
4253 ("julia-offsetarrays" ,julia-offsetarrays)
4254 ("julia-stringdistances" ,julia-stringdistances)))
4256 ; `(("julia-colors" ,julia-colors)
4257 ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
4258 ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment)
4259 ; ("julia-imagemagick" ,julia-imagemagick)
4260 ; ("julia-ometiff" ,julia-ometiff)
4261 ; ("julia-referencetests" ,julia-referencetests)))
4262 (home-page "https://testimages.juliaimages.org/")
4263 (synopsis "Standard test images for Julia")
4264 (description "This package provides a convenient Julia interface for loading
4265 standard named test images and example images for the internal usage in
4266 @code{JuliaImages}. This can be used in conjunction with the @code{Images}
4268 (license license:expat)))
4270 (define-public julia-tracker
4272 (name "julia-tracker")
4278 (url "https://github.com/FluxML/Tracker.jl")
4279 (commit (string-append "v" version))))
4280 (file-name (git-file-name name version))
4282 (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j"))
4283 (patches (search-patches "julia-tracker-16-compat.patch"))))
4284 (build-system julia-build-system)
4286 `(("julia-adapt" ,julia-adapt)
4287 ("julia-diffrules" ,julia-diffrules)
4288 ("julia-forwarddiff" ,julia-forwarddiff)
4289 ("julia-macrotools" ,julia-macrotools)
4290 ("julia-nanmath" ,julia-nanmath)
4291 ("julia-nnlib" ,julia-nnlib)
4292 ("julia-requires" ,julia-requires)
4293 ("julia-specialfunctions" ,julia-specialfunctions)))
4295 `(("julia-pdmats" ,julia-pdmats)))
4296 (home-page "https://github.com/FluxML/Tracker.jl")
4297 (synopsis "Operator overloading reverse-mode automatic differentiator")
4298 (description "@code{Tracker.jl} previously provided @code{Flux.jl} with
4299 automatic differentiation for its machine learning platform.")
4300 (license license:expat)))
4302 (define-public julia-typedtables
4304 (name "julia-typedtables")
4310 (url "https://github.com/JuliaData/TypedTables.jl")
4311 (commit (string-append "v" version))))
4312 (file-name (git-file-name name version))
4314 (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i"))))
4315 (build-system julia-build-system)
4317 `(("julia-adapt" ,julia-adapt)
4318 ("julia-splitapplycombine" ,julia-splitapplycombine)
4319 ("julia-tables" ,julia-tables)))
4320 (home-page "https://github.com/JuliaData/TypedTables.jl")
4321 (synopsis "Column-based storage for data analysis in Julia")
4322 (description "@code{TypedTables.jl} provides two column-based storage
4323 containers: @code{Table} and @code{FlexTable}, both of which represent an array
4324 of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use
4325 and fast, and presents a very minimal new interface to learn.")
4326 (license license:expat)))
4328 (define-public julia-unpack
4330 (name "julia-unpack")
4336 (url "https://github.com/mauro3/UnPack.jl")
4337 (commit (string-append "v" version))))
4338 (file-name (git-file-name name version))
4340 (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
4341 (build-system julia-build-system)
4342 (home-page "https://github.com/mauro3/UnPack.jl")
4343 (synopsis "Pack and Unpack macros for Julia")
4344 (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
4345 types, modules, and dictionaries.")
4346 (license license:expat)))
4348 (define-public julia-uris
4356 (url "https://github.com/JuliaWeb/URIs.jl")
4357 (commit (string-append "v" version))))
4358 (file-name (git-file-name name version))
4360 (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
4361 (build-system julia-build-system)
4363 '(#:julia-package-name "URIs" ;required to run tests
4365 (modify-phases %standard-phases
4366 (add-before 'check 'change-dir
4367 ;; Tests must be run from the testdir
4368 (lambda* (#:key source outputs #:allow-other-keys)
4369 (let ((out (assoc-ref outputs "out")))
4371 (string-append out "/share/julia/packages/URIs/test")))
4373 ;; required for tests
4374 (inputs `(("julia-json" ,julia-json)))
4375 (home-page "https://github.com/JuliaWeb/URIs.jl")
4376 (synopsis "URI parsing in Julia")
4377 (description "@code{URIs.jl} is a Julia package that allows parsing and
4378 working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
4380 (license license:expat)))
4382 (define-public julia-unitful
4384 (name "julia-unitful")
4390 (url "https://github.com/PainterQubits/Unitful.jl")
4391 (commit (string-append "v" version))))
4392 (file-name (git-file-name name version))
4394 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
4395 (build-system julia-build-system)
4397 `(("julia-constructionbase" ,julia-constructionbase)))
4398 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
4399 (synopsis "Physical units in Julia")
4400 (description "This package supports SI units and also many other unit
4402 (license license:expat)))
4404 (define-public julia-versionparsing
4406 (name "julia-versionparsing")
4412 (url "https://github.com/JuliaInterop/VersionParsing.jl")
4413 (commit (string-append "v" version))))
4414 (file-name (git-file-name name version))
4416 (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva"))))
4417 (build-system julia-build-system)
4418 (home-page "https://github.com/JuliaInterop/VersionParsing.jl")
4419 (synopsis "Flexible VersionNumber parsing in Julia")
4420 (description "The @code{VersionParsing} package implements flexible parsing
4421 of version-number strings into Julia's built-in @code{VersionNumber} type, via
4422 the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)}
4423 constructor, @code{vparse(string)} can handle version-number strings in a much
4424 wider range of formats than are encompassed by the semver standard. This is
4425 useful in order to support @code{VersionNumber} comparisons applied to
4426 \"foreign\" version numbers from external packages.")
4427 (license license:expat)))
4429 (define-public julia-weakrefstrings
4431 (name "julia-weakrefstrings")
4437 (url "https://github.com/JuliaData/WeakRefStrings.jl")
4438 (commit (string-append "v" version))))
4439 (file-name (git-file-name name version))
4441 (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219"))))
4442 (build-system julia-build-system)
4444 `(("julia-dataapi" ,julia-dataapi)
4445 ("julia-parsers" ,julia-parsers)))
4446 (home-page "https://github.com/JuliaData/WeakRefStrings.jl")
4447 (synopsis "Efficient string representation and transfer in Julia")
4448 (description "This package provides a minimal String type for Julia that
4449 allows for efficient string representation and transfer")
4450 (license license:expat)))
4452 (define-public julia-woodburymatrices
4454 (name "julia-woodburymatrices")
4460 (url "https://github.com/timholy/WoodburyMatrices.jl")
4461 (commit (string-append "v" version))))
4462 (file-name (git-file-name name version))
4464 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
4465 (build-system julia-build-system)
4466 (home-page "https://github.com/timholy/WoodburyMatrices.jl")
4467 (synopsis "Support for the Woodbury matrix identity for Julia")
4468 (description "This package provides support for the Woodbury matrix identity
4469 for the Julia programming language. This is a generalization of the
4470 Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious
4471 for floating-point roundoff errors, so be prepared for a certain amount of
4472 inaccuracy in the result.")
4473 (license license:expat)))
4475 (define-public julia-zipfile
4477 (name "julia-zipfile")
4483 (url "https://github.com/fhs/ZipFile.jl")
4484 (commit (string-append "v" version))))
4485 (file-name (git-file-name name version))
4488 "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
4489 (build-system julia-build-system)
4491 `(("julia-zlib-jll" ,julia-zlib-jll)))
4492 (home-page "https://github.com/fhs/ZipFile.jl")
4493 (synopsis "Read/Write ZIP archives in Julia")
4494 (description "This module provides support for reading and writing ZIP
4495 archives in Julia.")
4496 (license license:expat)))
4498 (define-public julia-zygoterules
4500 (name "julia-zygoterules")
4506 (url "https://github.com/FluxML/ZygoteRules.jl")
4507 (commit (string-append "v" version))))
4508 (file-name (git-file-name name version))
4510 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
4511 (build-system julia-build-system)
4513 `(("julia-macrotools" ,julia-macrotools)))
4514 (home-page "https://github.com/FluxML/ZygoteRules.jl")
4515 (synopsis "Add minimal custom gradients to Zygote")
4516 (description "Minimal package which enables to add custom gradients to
4517 Zygote, without depending on Zygote itself.")
4518 (license license:expat)))
4520 (define-public julia-zygote
4522 (name "julia-zygote")
4528 (url "https://github.com/FluxML/Zygote.jl")
4529 (commit (string-append "v" version))))
4530 (file-name (git-file-name name version))
4532 (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
4533 (build-system julia-build-system)
4535 `(#:tests? #f)) ;require CUDA, not packaged yet
4537 `(("julia-abstractffs" ,julia-abstractffts)
4538 ("julia-chainrules" ,julia-chainrules)
4539 ("julia-diffrules" ,julia-diffrules)
4540 ("julia-fillarrays" ,julia-fillarrays)
4541 ("julia-forwarddiff" ,julia-forwarddiff)
4542 ("julia-irtools" ,julia-irtools)
4543 ("julia-macrotools" ,julia-macrotools)
4544 ("julia-nanmath" ,julia-nanmath)
4545 ("julia-requires" ,julia-requires)
4546 ("julia-specialfunctions" ,julia-specialfunctions)
4547 ("julia-zygote-rules" ,julia-zygoterules)))
4548 (home-page "https://fluxml.ai/Zygote.jl")
4549 (synopsis "Automatic differentiation in Julia")
4550 (description "Zygote provides source-to-source automatic
4551 differentiation (AD) in Julia, and is the next-generation AD system for the
4552 Flux differentiable programming framework.")
4553 (license license:expat)))