1 ;;; GNU Guix --- Functional package management for GNU
2 ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
3 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
4 ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
5 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
7 ;;; This file is part of GNU Guix.
9 ;;; GNU Guix is free software; you can redistribute it and/or modify it
10 ;;; under the terms of the GNU General Public License as published by
11 ;;; the Free Software Foundation; either version 3 of the License, or (at
12 ;;; your option) any later version.
14 ;;; GNU Guix is distributed in the hope that it will be useful, but
15 ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
16 ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17 ;;; GNU General Public License for more details.
19 ;;; You should have received a copy of the GNU General Public License
20 ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
22 (define-module (gnu packages julia-xyz)
23 #:use-module ((guix licenses) #:prefix license:)
24 #:use-module (gnu packages)
25 #:use-module (guix utils)
26 #:use-module (guix packages)
27 #:use-module (guix git-download)
28 #:use-module (guix build-system julia)
29 #:use-module (gnu packages gcc)
30 #:use-module (gnu packages julia-jll)
31 #:use-module (gnu packages python)
32 #:use-module (gnu packages python-xyz)
33 #:use-module (gnu packages version-control))
35 (define-public julia-abstractffts
37 (name "julia-abstractffts")
43 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
44 (commit (string-append "v" version))))
45 (file-name (git-file-name name version))
47 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
48 (build-system julia-build-system)
49 (inputs ;required for tests
50 `(("julia-unitful" ,julia-unitful)))
51 (home-page "https://github.com/JuliaGPU/Adapt.jl")
52 (synopsis "General framework for fast Fourier transforms (FFTs)")
53 (description "This package allows multiple FFT packages to co-exist with
54 the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
55 mainly not intended to be used directly. Instead, developers of packages that
56 implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
57 types/functions defined in AbstractFFTs.")
58 (license license:expat)))
60 (define-public julia-abstracttrees
62 (name "julia-abstracttrees")
68 (url "https://github.com/JuliaCollections/AbstractTrees.jl")
69 (commit (string-append "v" version))))
70 (file-name (git-file-name name version))
72 (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
73 (build-system julia-build-system)
74 (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
75 (synopsis "Abstract Julia interfaces for working with trees")
76 (description "This Julia package provides several utilities for working
77 with tree-like data structures. Most importantly, it defines the
78 @code{children} method that any package that contains such a data structure
79 may import and extend in order to take advantage of any generic tree algorithm
81 (license license:expat)))
83 (define-public julia-adapt
91 (url "https://github.com/JuliaGPU/Adapt.jl")
92 (commit (string-append "v" version))))
93 (file-name (git-file-name name version))
95 (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7"))))
96 (build-system julia-build-system)
97 (home-page "https://github.com/JuliaGPU/Adapt.jl")
98 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
99 (description "This Julia package provides the @code{adapt(T, x)} function
100 acts like @code{convert(T, x)}, but without the restriction of returning a
101 @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
102 be GPU compatible without throwing away the wrapper.")
103 (license license:expat)))
105 (define-public julia-ansicoloredprinters
107 (name "julia-ansicoloredprinters")
113 (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
114 (commit (string-append "v" version))))
115 (file-name (git-file-name name version))
117 (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
118 (build-system julia-build-system)
119 (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
120 (synopsis "ANSI escape code translator")
121 (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
122 ANSI escape codes to another format.")
123 (license license:expat)))
125 (define-public julia-aqua
133 (url "https://github.com/JuliaTesting/Aqua.jl")
134 (commit (string-append "v" version))))
135 (file-name (git-file-name name version))
137 (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk"))))
138 (build-system julia-build-system)
139 (home-page "https://github.com/JuliaTesting/Aqua.jl")
140 (synopsis "Automated quality assurance for Julia packages")
141 (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
142 provides functions to run a few automatable checks for Julia packages.")
143 (license license:expat)))
145 (define-public julia-arrayinterface
147 (name "julia-arrayinterface")
153 (url "https://github.com/JuliaArrays/ArrayInterface.jl")
154 (commit (string-append "v" version))))
155 (file-name (git-file-name name version))
157 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33"))))
158 (build-system julia-build-system)
160 `(("julia-ifelse" ,julia-ifelse)
161 ("julia-requires" ,julia-requires)
162 ("julia-static" ,julia-static)))
164 `(("julia-aqua" ,julia-aqua)
165 ("julia-bandedmatrices" ,julia-bandedmatrices)
166 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
167 ("julia-ifelse" ,julia-ifelse)
168 ("julia-offsetarrays" ,julia-offsetarrays)
169 ("julia-staticarrays" ,julia-staticarrays)))
170 (home-page "https://github.com/JuliaArrays/ArrayInterface.jl")
171 (synopsis "Base array interface primitives")
172 (description "The purpose of this library is to solidify extensions to the
173 current @code{AbstractArray} interface, which are put to use in package
174 ecosystems like @code{DifferentialEquations.jl}. Since these libraries are
175 live, this package will serve as a staging ground for ideas before they are
176 merged into Base Julia. For this reason, no functionality is exported so that
177 if such functions are added and exported in a future Base Julia, there will be
178 no issues with the upgrade.")
179 (license license:expat)))
181 (define-public julia-arraylayouts
183 (name "julia-arraylayouts")
189 (url "https://github.com/JuliaMatrices/ArrayLayouts.jl")
190 (commit (string-append "v" version))))
191 (file-name (git-file-name name version))
193 (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg"))))
194 (build-system julia-build-system)
196 `(("julia-fillarrays" ,julia-fillarrays)))
197 (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl")
198 (synopsis "Array layouts and general fast linear algebra")
199 (description "This package implements a trait-based framework for describing
200 array layouts such as column major, row major, etc. that can be dispatched to
201 appropriate BLAS or optimised Julia linear algebra routines. This supports a
202 much wider class of matrix types than Julia's in-built @code{StridedArray}.")
203 (license license:expat)))
205 (define-public julia-axisalgorithms
207 (name "julia-axisalgorithms")
213 (url "https://github.com/timholy/AxisAlgorithms.jl")
214 (commit (string-append "v" version))))
215 (file-name (git-file-name name version))
217 (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk"))))
218 (build-system julia-build-system)
220 `(("julia-woodburymatrices" ,julia-woodburymatrices)))
221 (home-page "https://github.com/timholy/AxisAlgorithms.jl")
222 (synopsis "Filtering and linear algebra routines for multidimensional arrays")
223 (description "@code{AxisAlgorithms} is a collection of filtering and linear
224 algebra algorithms for multidimensional arrays. For algorithms that would
225 typically apply along the columns of a matrix, you can instead pick an arbitrary
227 (license license:expat)))
229 (define-public julia-axisarrays
231 (name "julia-axisarrays")
237 (url "https://github.com/JuliaArrays/AxisArrays.jl")
238 (commit (string-append "v" version))))
239 (file-name (git-file-name name version))
241 (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk"))))
242 (build-system julia-build-system)
244 `(("julia-rangearrays" ,julia-rangearrays)
245 ("julia-intervalsets" ,julia-intervalsets)
246 ("julia-itertools" ,julia-itertools)))
248 `(("julia-offsetarrays" ,julia-offsetarrays)
249 ("julia-unitful" ,julia-unitful)))
250 (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/")
251 (synopsis "Arrays where each dimension can have a named axis with values")
252 (description "This package for the Julia language provides an array type
253 (the AxisArray) that knows about its dimension names and axis values. This
254 allows for indexing by name without incurring any runtime overhead. This
255 permits one to implement algorithms that are oblivious to the storage order of
256 the underlying arrays. AxisArrays can also be indexed by the values along their
257 axes, allowing column names or interval selections.")
258 (license license:expat)))
260 (define-public julia-bandedmatrices
262 (name "julia-bandedmatrices")
268 (url "https://github.com/JuliaMatrices/BandedMatrices.jl")
269 (commit (string-append "v" version))))
270 (file-name (git-file-name name version))
272 (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism"))))
273 (build-system julia-build-system)
275 `(("julia-arraylayouts" ,julia-arraylayouts)
276 ("julia-fillarrays" ,julia-fillarrays)))
278 `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra)))
279 (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl")
280 (synopsis "Julia package for representing banded matrices")
281 (description "This package supports representing banded matrices by only
282 the entries on the bands.")
283 (license license:expat)))
285 (define-public julia-benchmarktools
287 (name "julia-benchmarktools")
293 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
294 (commit (string-append "v" version))))
295 (file-name (git-file-name name version))
297 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
298 (build-system julia-build-system)
299 (propagated-inputs `(("julia-json" ,julia-json)))
300 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
301 (synopsis "Benchmarking framework for the Julia language")
302 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
303 code easy by supplying a framework for writing and running groups of
304 benchmarks as well as comparing benchmark results.")
305 (license license:expat)))
307 (define-public julia-blockarrays
309 (name "julia-blockarrays")
315 (url "https://github.com/JuliaArrays/BlockArrays.jl")
316 (commit (string-append "v" version))))
317 (file-name (git-file-name name version))
319 (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1"))))
320 (build-system julia-build-system)
322 `(("julia-arraylayouts" ,julia-arraylayouts)
323 ("julia-fillarrays" ,julia-fillarrays)))
325 `(("julia-lazyarrays" ,julia-lazyarrays)
326 ("julia-offsetarrays" ,julia-offsetarrays)
327 ("julia-staticarrays" ,julia-staticarrays)))
328 (home-page "https://github.com/JuliaArrays/BlockArrays.jl")
329 (synopsis "BlockArrays for Julia")
330 (description "A block array is a partition of an array into blocks or
331 subarrays. This package has two purposes. Firstly, it defines an interface for
332 an @code{AbstractBlockArray} block arrays that can be shared among types
333 representing different types of block arrays. The advantage to this is that it
334 provides a consistent API for block arrays.
335 Secondly, it also implements two different type of block arrays that follow the
336 @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each
337 block contiguously while the type @code{PseudoBlockArray} stores the full matrix
338 contiguously. This means that @code{BlockArray} supports fast non copying
339 extraction and insertion of blocks while @code{PseudoBlockArray} supports fast
340 access to the full matrix to use in in for example a linear solver.")
341 (license license:expat)))
343 (define-public julia-blockbandedmatrices
345 (name "julia-blockbandedmatrices")
351 (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
352 (commit (string-append "v" version))))
353 (file-name (git-file-name name version))
355 (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9"))))
356 (build-system julia-build-system)
358 `(("julia-arraylayouts" ,julia-arraylayouts)
359 ("julia-bandedmatrices" ,julia-bandedmatrices)
360 ("julia-blockarrays" ,julia-blockarrays)
361 ("julia-fillarrays" ,julia-fillarrays)
362 ("julia-matrixfactorizations" ,julia-matrixfactorizations)))
363 (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
364 (synopsis "Block-banded matrices and banded-block-banded matrices")
365 (description "This package supports representing block-banded and
366 banded-block-banded matrices by only storing the entries in the non-zero bands.
367 A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
368 @code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
369 (license license:expat)))
371 (define-public julia-bson
379 (url "https://github.com/JuliaIO/BSON.jl")
380 (commit (string-append "v" version))))
381 (file-name (git-file-name name version))
383 (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn"))))
384 (build-system julia-build-system)
386 `(("julia-dataframes" ,julia-dataframes)))
387 (home-page "https://github.com/JuliaIO/BSON.jl")
388 (synopsis "Binary JSON serialisation format")
389 (description "@code{BSON.jl} is a Julia package for working with the Binary
390 JSON serialisation format. It can be used as a general store for Julia data
392 (license license:expat)))
394 (define-public julia-bufferedstreams
396 (name "julia-bufferedstreams")
402 (url "https://github.com/BioJulia/BufferedStreams.jl")
403 (commit (string-append "v" version))))
404 (file-name (git-file-name name version))
406 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
407 (build-system julia-build-system)
408 ;; The package is old and tests are using undefined functions. They also
410 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
413 #:julia-package-name "BufferedStreams"))
414 (propagated-inputs `(("julia-compat" ,julia-compat)))
415 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
416 (synopsis "Fast composable IO streams")
417 (description "@code{BufferedStreams.jl} provides buffering for IO
418 operations. It can wrap any @code{IO} type automatically making incremental
419 reading and writing faster.")
420 (license license:expat)))
422 (define-public julia-calculus
424 (name "julia-calculus")
430 (url "https://github.com/JuliaMath/Calculus.jl")
431 (commit (string-append "v" version))))
432 (file-name (git-file-name name version))
434 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
435 (build-system julia-build-system)
436 (home-page "https://github.com/JuliaMath/Calculus.jl")
437 (synopsis "Common utilities for automatic differentiation")
438 (description "This package provides tools for working with the basic
439 calculus operations of differentiation and integration. The @code{Calculus}
440 package produces approximate derivatives by several forms of finite
441 differencing or produces exact derivative using symbolic differentiation. It
442 can also be used to compute definite integrals by different numerical
444 (license license:expat)))
446 (define-public julia-categoricalarrays
448 (name "julia-categoricalarrays")
454 (url "https://github.com/JuliaData/CategoricalArrays.jl")
455 (commit (string-append "v" version))))
456 (file-name (git-file-name name version))
458 (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x"))))
459 (build-system julia-build-system)
461 `(("julia-pooledarrays" ,julia-pooledarrays)))
463 `(("julia-dataapi" ,julia-dataapi)
464 ("julia-json" ,julia-json)
465 ("julia-json3" ,julia-json3)
466 ("julia-missings" ,julia-missings)
467 ("julia-recipesbase" ,julia-recipesbase)
468 ("julia-structtypes" ,julia-structtypes)))
469 (home-page "https://github.com/JuliaData/CategoricalArrays.jl")
470 (synopsis "Arrays for working with categorical data")
471 (description "This package provides tools for working with categorical
472 variables, both with unordered (nominal variables) and ordered categories
473 (ordinal variables), optionally with missing values.")
474 (license license:expat)))
476 (define-public julia-chainrules
478 (name "julia-chainrules")
484 (url "https://github.com/JuliaDiff/ChainRules.jl")
485 (commit (string-append "v" version))))
486 (file-name (git-file-name name version))
488 (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70"))))
489 (build-system julia-build-system)
490 (inputs ;required for test
491 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
492 ("julia-finitedifferences" ,julia-finitedifferences)
493 ("julia-nanmath" ,julia-nanmath)
494 ("julia-specialfunctions" ,julia-specialfunctions)))
496 `(("julia-chainrulescore" ,julia-chainrulescore)
497 ("julia-compat" ,julia-compat)
498 ("julia-reexport" ,julia-reexport)
499 ("julia-requires" ,julia-requires)))
500 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
501 (synopsis "Common utilities for automatic differentiation")
502 (description "The is package provides a variety of common utilities that
503 can be used by downstream automatic differentiation (AD) tools to define and
504 execute forward-, reverse-, and mixed-mode primitives.")
505 (license license:expat)))
507 (define-public julia-chainrulescore
509 (name "julia-chainrulescore")
515 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
516 (commit (string-append "v" version))))
517 (file-name (git-file-name name version))
519 (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb"))))
520 (build-system julia-build-system)
521 (inputs ;required for tests
522 `(("julia-benchmarktools" ,julia-benchmarktools)
523 ("julia-staticarrays" ,julia-staticarrays)))
525 `(("julia-compat" ,julia-compat)))
526 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
527 (synopsis "Common utilities used by downstream automatic differentiation tools")
528 (description "The package provides a light-weight dependency for defining
529 sensitivities for functions without the need to depend on ChainRules itself.")
530 (license license:expat)))
532 (define-public julia-chainrulestestutils
534 (name "julia-chainrulestestutils")
540 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
541 (commit (string-append "v" version))))
542 (file-name (git-file-name name version))
544 (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9"))))
545 (build-system julia-build-system)
547 `(("julia-chainrulescore" ,julia-chainrulescore)
548 ("julia-compat" ,julia-compat)
549 ("julia-finitedifference" ,julia-finitedifferences)))
550 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
551 (synopsis "Common utilities used by downstream automatic differentiation tools")
552 (description "This package is designed to help in testing
553 @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
554 entry points are @code{ChainRulesTestUtils.frule_test},
555 @code{ChainRulesTestUtils.rrule_test}, and
556 @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
557 rules against numerical differentiation (using @code{FiniteDifferences.jl}).
559 @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
560 can be a test-only dependency, allowing it to have potentially heavy
561 dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
562 (license license:expat)))
564 (define-public julia-colors
566 (name "julia-colors")
572 (url "https://github.com/JuliaGraphics/Colors.jl")
573 (commit (string-append "v" version))))
574 (file-name (git-file-name name version))
576 (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
577 (build-system julia-build-system)
579 `(("julia-colortypes" ,julia-colortypes)
580 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
581 ("julia-reexport" ,julia-reexport)))
582 (home-page "https://github.com/JuliaGraphics/Colors.jl")
583 (synopsis "Tools for dealing with color")
584 (description "This package provides a wide array of functions for dealing
585 with color. This includes conversion between colorspaces, measuring distance
586 between colors, simulating color blindness, parsing colors, and generating
587 color scales for graphics.")
588 (license license:expat)))
590 (define-public julia-colorschemes
592 (name "julia-colorschemes")
598 (url "https://github.com/JuliaGraphics/ColorSchemes.jl")
599 (commit (string-append "v" version))))
600 (file-name (git-file-name name version))
602 (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq"))))
603 (build-system julia-build-system)
605 `(("julia-colors" ,julia-colors)
606 ("julia-colortypes" ,julia-colortypes)
607 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
608 ("julia-staticarrays" ,julia-staticarrays)))
609 (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl")
610 (synopsis "Colorschemes, colormaps, gradients, and palettes")
611 (description "This package provides a collection of colorschemes.")
612 (license license:expat)))
614 (define-public julia-colortypes
616 (name "julia-colortypes")
622 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
623 (commit (string-append "v" version))))
624 (file-name (git-file-name name version))
626 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
628 '(#:tests? #f)) ;require Documenter, not packaged yet
629 (build-system julia-build-system)
631 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
632 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
633 (synopsis "Basic color types and constructor")
634 (description "This minimalistic package serves as the foundation for
635 working with colors in Julia. It defines basic color types and their
636 constructors, and sets up traits and show methods to make them easier to work
638 (license license:expat)))
640 (define-public julia-colorvectorspace
642 (name "julia-colorvectorspace")
648 (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
649 (commit (string-append "v" version))))
650 (file-name (git-file-name name version))
652 (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi"))))
653 (build-system julia-build-system)
655 `(("julia-colortypes" ,julia-colortypes)
656 ("julia-specialfunctions" ,julia-specialfunctions)
657 ("julia-tensorcore" ,julia-tensorcore)))
659 `(("julia-colors" ,julia-colors)))
660 (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
661 (synopsis "Treat colors as n-vectors for the purposes of arithmetic")
662 (description "This package is an add-on to @code{ColorTypes.jl} and provides
663 fast mathematical operations for objects with types such as RGB and Gray.
664 Specifically, with this package both grayscale and RGB colors are treated as if
665 they are points in a normed vector space.")
666 (license license:expat)))
668 (define-public julia-combinatorics
670 (name "julia-combinatorics")
676 (url "https://github.com/JuliaMath/Combinatorics.jl")
677 (commit (string-append "v" version))))
678 (file-name (git-file-name name version))
680 (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
681 (build-system julia-build-system)
682 (home-page "https://github.com/JuliaMath/Combinatorics.jl")
683 (synopsis "Combinatorics library for Julia")
684 (description "This package provides a combinatorics library for Julia,
685 focusing mostly (as of now) on enumerative combinatorics and permutations.")
686 (license license:expat)))
688 (define-public julia-commonsubexpressions
690 (name "julia-commonsubexpressions")
696 (url "https://github.com/rdeits/CommonSubexpressions.jl")
697 (commit (string-append "v" version))))
698 (file-name (git-file-name name version))
700 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
701 (build-system julia-build-system)
703 `(("julia-macrotools" ,julia-macrotools)))
704 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
705 (synopsis "@code{@@cse} macro for Julia")
706 (description "This package provides the @code{@@cse} macro, which performs
707 common subexpression elimination.")
708 (license license:expat)))
710 (define-public julia-compat
712 (name "julia-compat")
718 (url "https://github.com/JuliaLang/Compat.jl")
719 (commit (string-append "v" version))))
720 (file-name (git-file-name name version))
722 (base32 "0qzvaqi5gqgc747fnajbvvf5vqbh6cwykwky00c7glvmvdsgk3z0"))))
723 (build-system julia-build-system)
724 (home-page "https://github.com/JuliaLang/Compat.jl")
725 (synopsis "Compatibility across Julia versions")
726 (description "The Compat package is designed to ease interoperability
727 between older and newer versions of the Julia language. The Compat package
728 provides a macro that lets you use the latest syntax in a backwards-compatible
730 (license license:expat)))
732 (define-public julia-constructionbase
734 (name "julia-constructionbase")
740 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
741 (commit (string-append "v" version))))
742 (file-name (git-file-name name version))
744 (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q"))))
745 (build-system julia-build-system)
746 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
747 (synopsis "Primitive functions for construction of objects")
748 (description "This very lightweight package provides primitive functions
749 for construction of objects.")
750 (license license:expat)))
752 (define-public julia-coordinatetransformations
754 (name "julia-coordinatetransformations")
760 (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
761 (commit (string-append "v" version))))
762 (file-name (git-file-name name version))
764 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d"))))
765 (build-system julia-build-system)
767 `(#:tests? #f)) ; Documenter.jl not packaged yet.
769 `(("julia-staticarrays" ,julia-staticarrays)))
771 ; `(("julia-documenter" ,julia-documenter)
772 ; ("julia-forwarddiff" ,julia-forwarddiff)
773 ; ("julia-unitful" ,julia-unitful)))
774 (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
775 (synopsis "Coordinate transformations in Julia")
776 (description "@code{CoordinateTransformations} is a Julia package to manage
777 simple or complex networks of coordinate system transformations.
778 Transformations can be easily applied, inverted, composed, and differentiated
779 (both with respect to the input coordinates and with respect to transformation
780 parameters such as rotation angle). Transformations are designed to be
781 light-weight and efficient enough for, e.g., real-time graphical applications,
782 while support for both explicit and automatic differentiation makes it easy to
783 perform optimization and therefore ideal for computer vision applications such
784 as SLAM (simultaneous localization and mapping).")
785 (license license:expat)))
787 (define-public julia-crayons
789 (name "julia-crayons")
795 (url "https://github.com/KristofferC/Crayons.jl")
796 (commit (string-append "v" version))))
797 (file-name (git-file-name name version))
799 (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
800 (build-system julia-build-system)
801 (home-page "https://github.com/KristofferC/Crayons.jl")
802 (synopsis "Colored and styled strings for terminals")
803 (description "Crayons is a package that makes it simple to write strings in
804 different colors and styles to terminals. It supports the 16 system colors,
805 both the 256 color and 24 bit true color extensions, and the different text
806 styles available to terminals.")
807 (license license:expat)))
809 (define-public julia-dataapi
811 (name "julia-dataapi")
817 (url "https://github.com/JuliaData/DataAPI.jl")
818 (commit (string-append "v" version))))
819 (file-name (git-file-name name version))
821 (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7"))))
822 (build-system julia-build-system)
823 (home-page "https://github.com/JuliaData/DataAPI.jl")
824 (synopsis "Data-focused namespace for packages to share functions")
825 (description "This package provides a namespace for data-related generic
826 function definitions to solve the optional dependency problem; packages wishing
827 to share and/or extend functions can avoid depending directly on each other by
828 moving the function definition to DataAPI.jl and each package taking a
830 (license license:expat)))
832 (define-public julia-dataframes
834 (name "julia-dataframes")
840 (url "https://github.com/JuliaData/DataFrames.jl")
841 (commit (string-append "v" version))))
842 (file-name (git-file-name name version))
844 (base32 "1bk0amrghgjrkyn1mm4ac23swwbgszl1d0qyl9137qj5zvv9dasp"))))
845 (build-system julia-build-system)
848 (modify-phases %standard-phases
849 (add-after 'unpack 'skip-failing-test
851 ;; Tests with non-standard colors.
852 (substitute* "test/show.jl"
853 (("test (sprint\\(show, df, context=:color=>true)" _ test)
854 (string-append "test_nowarn " test)))
855 (substitute* "test/io.jl"
856 (("testset \\\"improved.*" all)
857 (string-append all "return\n")))
858 (substitute* "test/join.jl"
859 (("test (levels\\(outerjoin\\(B)" _ test)
860 (string-append "test_nowarn " test)))
863 `(("julia-dataapi" ,julia-dataapi)
864 ("julia-invertedindices" ,julia-invertedindices)
865 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
866 ("julia-missings" ,julia-missings)
867 ("julia-pooledarrays" ,julia-pooledarrays)
868 ("julia-prettytables" ,julia-prettytables)
869 ("julia-reexport" ,julia-reexport)
870 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
871 ("julia-tables" ,julia-tables)
872 ("julia-tabletraits" ,julia-tabletraits)))
874 `(("julia-categoricalarrays" ,julia-categoricalarrays)
875 ("julia-combinatorics" ,julia-combinatorics)
876 ("julia-datastructures" ,julia-datastructures)
877 ("julia-datavalues" ,julia-datavalues)
878 ("julia-offsetarrays" ,julia-offsetarrays)
879 ("julia-unitful" ,julia-unitful)))
880 (home-page "https://dataframes.juliadata.org/stable/")
881 (synopsis "In-memory tabular data")
882 (description "This package provides a set of tools for working with tabular
883 data in Julia. Its design and functionality are similar to those of Pandas from
884 Python or @code{data.frame}, @code{data.table} and @code{dplyr} from R, making
885 it a great general purpose data science tool, especially for those coming to
886 Julia from R or Python.")
887 (license license:expat)))
889 (define-public julia-datastructures
891 (name "julia-datastructures")
897 (url "https://github.com/JuliaCollections/DataStructures.jl")
898 (commit (string-append "v" version))))
899 (file-name (git-file-name name version))
901 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
903 `(("julia-compat" ,julia-compat)
904 ("julia-orderedcollections" ,julia-orderedcollections)))
905 (build-system julia-build-system)
906 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
907 (synopsis "Julia module providing different data structures")
908 (description "This package implements a variety of data structures,
909 including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
910 @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
911 (license license:expat)))
913 (define-public julia-datavalueinterfaces
915 (name "julia-datavalueinterfaces")
921 (url "https://github.com/queryverse/DataValueInterfaces.jl")
922 (commit (string-append "v" version))))
923 (file-name (git-file-name name version))
925 (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"))))
926 (build-system julia-build-system)
927 (home-page "https://github.com/queryverse/DataValueInterfaces.jl")
928 (synopsis "Interface for DataValues.jl")
929 (description "This package allows a few \"forward\" definitions for the
930 @code{DataValues.jl} package that other packages can utilize for integration
931 without having to take direct dependencies.")
932 (license license:expat)))
934 (define-public julia-datavalues
936 (name "julia-datavalues")
942 (url "https://github.com/queryverse/DataValues.jl")
943 (commit (string-append "v" version))))
944 (file-name (git-file-name name version))
946 (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
947 (build-system julia-build-system)
949 `(#:tests? #f ; Tests need upgrading with newer Julia version.
951 (modify-phases %standard-phases
952 (add-after 'unpack 'skip-known-failing-tests
954 ;; See upstream report:
955 ;; https://github.com/queryverse/DataValues.jl/issues/83
956 (substitute* "test/array/test_reduce.jl"
957 ((".*DataValue\\(mapreduce.*") "")
958 ((".*DataValue\\(method\\(f.*") ""))
961 `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces)))
962 (home-page "https://github.com/queryverse/DataValues.jl")
963 (synopsis "Missing values for Julia")
964 (description "This package provides the type @code{DataValue} that is used
965 to represent missing data.")
966 (license license:expat)))
968 (define-public julia-deepdiffs
970 (name "julia-deepdiffs")
976 (url "https://github.com/ssfrr/DeepDiffs.jl")
977 (commit (string-append "v" version))))
978 (file-name (git-file-name name version))
980 (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds"))))
981 (build-system julia-build-system)
982 (home-page "https://github.com/ssfrr/DeepDiffs.jl")
983 (synopsis "Compute and pretty-print diffs for data structures")
984 (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function,
985 which finds and displays differences (diffs) between Julia data structures. It
986 supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing
987 dictionaries where values associated with a particular key may change,
988 @code{deepdiff} will recurse into value to provide a more detailed diff.")
989 (license license:expat)))
991 (define-public julia-dictionaries
993 (name "julia-dictionaries")
999 (url "https://github.com/andyferris/Dictionaries.jl")
1000 (commit (string-append "v" version))))
1001 (file-name (git-file-name name version))
1003 (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5"))))
1004 (build-system julia-build-system)
1006 `(("julia-indexing" ,julia-indexing)))
1007 (home-page "https://github.com/andyferris/Dictionaries.jl")
1008 (synopsis "Alternative interface for dictionaries in Julia")
1009 (description "This package provides an alternative interface for
1010 dictionaries in Julia, for improved productivity and performance.")
1011 (license license:expat)))
1013 (define-public julia-distances
1015 (name "julia-distances")
1021 (url "https://github.com/JuliaStats/Distances.jl")
1022 (commit (string-append "v" version))))
1023 (file-name (git-file-name name version))
1025 (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
1026 (build-system julia-build-system)
1029 (modify-phases %standard-phases
1030 (add-after 'unpack 'skip-flakey-tests
1032 ;; Some combination of these tests fail nondeterministically
1033 ;; each of the times this package is built.
1034 (substitute* "test/test_dists.jl"
1035 (("test dyz ≥") "test_nowarn dyz ≥")
1036 (("test dist\\(y, x") "test_nowarn dist(y, x")
1037 (("test dist\\(z, x") "test_nowarn dist(z, x")
1038 (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
1040 `(("julia-statsapi" ,julia-statsapi)))
1042 `(("julia-offsetarrays" ,julia-offsetarrays)
1043 ("julia-unitful" ,julia-unitful)))
1044 (home-page "https://github.com/JuliaStats/Distances.jl")
1045 (synopsis "Julia package for evaluating distances (metrics) between vectors")
1046 (description "A Julia package for evaluating distances(metrics) between
1047 vectors. This package also provides optimized functions to compute column-wise
1048 and pairwise distances, which are often substantially faster than a
1049 straightforward loop implementation.")
1050 (license license:expat)))
1052 (define-public julia-docstringextensions
1054 (name "julia-docstringextensions")
1060 (url "https://github.com/JuliaDocs/DocStringExtensions.jl")
1061 (commit (string-append "v" version))))
1062 (file-name (git-file-name name version))
1064 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
1065 (build-system julia-build-system)
1067 `(#:tests? #f)) ; Tests try to read SSL certificates.
1068 (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
1069 (synopsis "Extensions for Julia's docsystem")
1070 (description "This package provides a collection of useful extensions for
1071 Julia's built-in docsystem. These are features that are not yet mature enough
1072 to be considered for inclusion in Base, or that have sufficiently niche use
1073 cases that including them with the default Julia installation is not seen as
1074 valuable enough at this time.")
1075 (license license:expat)))
1077 ;; By removing all the javascript and css downloads any HTML documentation
1078 ;; produced by this package will not be very useful.
1079 (define-public julia-documenter
1081 (name "julia-documenter")
1087 (url "https://github.com/JuliaDocs/Documenter.jl")
1088 (commit (string-append "v" version))))
1089 (file-name (git-file-name name version))
1091 (base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam"))))
1092 (build-system julia-build-system)
1095 (modify-phases %standard-phases
1096 (add-after 'unpack 'patch-source
1097 (lambda* (#:key inputs #:allow-other-keys)
1098 (substitute* "src/Deps.jl"
1100 (string-append (assoc-ref inputs "python")
1101 "/bin/pip install")))
1103 (add-after 'unpack 'remove-javascript-downloads
1105 (substitute* "src/Writers/HTMLWriter.jl"
1106 (("cdnjs.cloudflare.com") "example.com"))
1107 ;; Removing the javascript downloads causes these tests fail.
1108 (substitute* "test/examples/tests.jl"
1109 ((".*Main\\.examples_html_doc.*") "")
1110 ((".*Main\\.examples_html_mathjax3_doc.*") ""))
1113 `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
1114 ("julia-docstringextensions" ,julia-docstringextensions)
1115 ("julia-iocapture" ,julia-iocapture)
1116 ("julia-json" ,julia-json)))
1118 `(("python" ,python-wrapper)))
1120 `(("git" ,git-minimal)
1121 ("julia-documentermarkdown" ,julia-documentermarkdown)
1122 ("julia-documentertools" ,julia-documentertools)))
1123 (home-page "https://juliadocs.github.io/Documenter.jl")
1124 (synopsis "Documentation generator for Julia")
1125 (description "This package provides a documentation generator for Julia.")
1126 (license license:expat)))
1128 (define julia-documenter-bootstrap
1130 (inherit julia-documenter)
1131 (name "julia-documenter-bootstrap")
1133 (substitute-keyword-arguments (package-arguments julia-documenter)
1135 `(modify-phases ,phases
1136 (delete 'patch-source)))
1137 ;; Not all dependencies available in bootstrap version.
1138 ((#:tests? _ #f) #f)))
1140 (native-inputs `())))
1142 (define-public julia-documentermarkdown
1144 (name "julia-documentermarkdown")
1150 (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1151 (commit (string-append "v" version))))
1152 (file-name (git-file-name name version))
1154 (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
1155 (build-system julia-build-system)
1157 ;; We don't want to propagate the bootstrap version.
1158 ;; Cycle with Documenter.jl in later versions.
1159 `(("julia-documenter" ,julia-documenter-bootstrap)))
1160 (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1161 (synopsis "Documenter's Markdown")
1162 (description "This package enables the Markdown / MkDocs backend of
1163 @code{Documenter.jl}.")
1164 (license license:expat)))
1166 (define-public julia-documentertools
1168 (name "julia-documentertools")
1174 (url "https://github.com/JuliaDocs/DocumenterTools.jl")
1175 (commit (string-append "v" version))))
1176 (file-name (git-file-name name version))
1178 (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
1179 (build-system julia-build-system)
1181 `(#:tests? #f)) ; Tests require network.
1183 ;; We don't want to propagate the bootstrap version.
1184 ;; Cycle with Documenter.jl in later versions.
1185 `(("julia-documenter" ,julia-documenter-bootstrap)))
1187 `(("julia-docstringextensions" ,julia-docstringextensions)
1188 ("julia-gumbo" ,julia-gumbo)
1189 ("julia-sass" ,julia-sass)))
1191 `(("julia-example" ,julia-example)))
1192 (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
1193 (synopsis "Extra tools for setting up Documenter.jl")
1194 (description "This package contains utilities for setting up documentation
1195 generation with @code{Documenter.jl}.")
1196 (license license:expat)))
1198 (define-public julia-diffresults
1200 (name "julia-diffresults")
1206 (url "https://github.com/JuliaDiff/DiffResults.jl")
1207 (commit (string-append "v" version))))
1208 (file-name (git-file-name name version))
1210 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
1212 `(("julia-staticarrays" ,julia-staticarrays)))
1213 (build-system julia-build-system)
1214 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
1215 (synopsis "In-place differentiation methods of primal values at multi-order")
1216 (description "This package provides the @code{DiffResult} type, which can
1217 be passed to in-place differentiation methods instead of an output buffer.")
1218 (license license:expat)))
1220 (define-public julia-diffrules
1222 (name "julia-diffrules")
1228 (url "https://github.com/JuliaDiff/DiffRules.jl")
1229 (commit (string-append "v" version))))
1230 (file-name (git-file-name name version))
1232 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
1234 `(("julia-nanmath" ,julia-nanmath)
1235 ("julia-specialfunctions" ,julia-specialfunctions)))
1236 (build-system julia-build-system)
1237 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
1238 (synopsis "Primitive differentiation rules")
1239 (description "This package provides primitive differentiation rules that
1240 can be composed via various formulations of the chain rule. Using
1241 @code{DiffRules}, new differentiation rules can defined, query whether or not
1242 a given rule exists, and symbolically apply rules to simple Julia expressions.")
1243 (license license:expat)))
1245 (define-public julia-difftests
1247 (name "julia-difftests")
1253 (url "https://github.com/JuliaDiff/DiffTests.jl")
1254 (commit (string-append "v" version))))
1255 (file-name (git-file-name name version))
1257 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
1258 (build-system julia-build-system)
1259 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
1260 (synopsis "Common test functions for differentiation tools")
1261 (description "This package contains a common suite of test functions for
1262 stressing the robustness of differentiation tools.")
1263 (license license:expat)))
1265 (define-public julia-dualnumbers
1267 (name "julia-dualnumbers")
1273 (url "https://github.com/JuliaDiff/DualNumbers.jl")
1274 (commit (string-append "v" version))))
1275 (file-name (git-file-name name version))
1277 (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
1278 (build-system julia-build-system)
1281 (modify-phases %standard-phases
1282 (add-after 'unpack 'adjust-test-suite
1284 (substitute* "test/runtests.jl"
1285 ;; Seems to not play nicely with SpecialFunctions
1286 ((".*isempty.*") "")))))))
1288 `(("julia-calculus" ,julia-calculus)
1289 ("julia-nanmath" ,julia-nanmath)
1290 ("julia-specialfunctions" ,julia-specialfunctions)))
1291 (home-page "https://github.com/JuliaDiff/DualNumbers.jl")
1292 (synopsis "Represent dual numbers and for perform dual algebra")
1293 (description "The @code{DualNumbers} Julia package defines the @code{Dual}
1294 type to represent dual numbers, and supports standard mathematical operations on
1295 them. Conversions and promotions are defined to allow performing operations on
1296 combinations of dual numbers with predefined Julia numeric types.")
1297 (license license:expat)))
1299 (define-public julia-ellipsisnotation
1301 (name "julia-ellipsisnotation")
1307 (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1308 (commit (string-append "v" version))))
1309 (file-name (git-file-name name version))
1311 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
1312 (build-system julia-build-system)
1315 (modify-phases %standard-phases
1316 (add-after 'unpack 'adjust-test-suite
1318 (substitute* "test/runtests.jl"
1319 ;; Seems to not play nicely with Julia-1.6.
1320 ((".*basic.jl.*") "")))))))
1322 `(("julia-arrayinterface" ,julia-arrayinterface)))
1323 (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1324 (synopsis "Elipsis notation implementation")
1325 (description "This implements the notation @code{..} for indexing arrays.
1326 It's similar to the Python @code{...} in that it means \"all of the columns
1327 before (or after)\".")
1328 (license license:expat)))
1330 (define-public julia-example
1331 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
1333 (name "julia-example")
1334 (version "0.5.4") ;tag not created upstream
1339 (url "https://github.com/JuliaLang/Example.jl")
1341 (file-name (git-file-name name version))
1343 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
1344 (build-system julia-build-system)
1345 (home-page "https://github.com/JuliaLang/Example.jl")
1346 (synopsis "Module providing examples")
1347 (description "This package provides various examples.")
1348 (license license:expat))))
1350 (define-public julia-exprtools
1352 (name "julia-exprtools")
1358 (url "https://github.com/invenia/ExprTools.jl")
1359 (commit (string-append "v" version))))
1360 (file-name (git-file-name name version))
1362 (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4"))))
1363 (build-system julia-build-system)
1364 (home-page "https://github.com/invenia/ExprTools.jl")
1365 (synopsis "Light-weight expression manipulation tools")
1366 (description "@code{ExprTools} provides tooling for working with Julia
1367 expressions during metaprogramming. This package aims to provide light-weight
1368 performant tooling without requiring additional package dependencies.")
1369 (license license:expat)))
1371 (define-public julia-ffmpeg
1373 (name "julia-ffmpeg")
1379 (url "https://github.com/JuliaIO/FFMPEG.jl")
1380 (commit (string-append "v" version))))
1381 (file-name (git-file-name name version))
1383 (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b"))))
1384 (build-system julia-build-system)
1386 `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
1387 ("julia-x264-jll" ,julia-x264-jll)))
1388 (home-page "https://github.com/JuliaIO/FFMPEG.jl")
1389 (synopsis "Julia Package for ffmpeg")
1390 (description "This package is made to be included into packages that just
1391 need the ffmpeg binaries + executables, and don't want the overhead of
1392 @code{VideoIO.jl}.")
1393 (license license:expat)))
1395 (define-public julia-fileio
1397 (name "julia-fileio")
1403 (url "https://github.com/JuliaIO/FileIO.jl")
1404 (commit (string-append "v" version))))
1405 (file-name (git-file-name name version))
1407 (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
1408 (build-system julia-build-system)
1411 (modify-phases %standard-phases
1412 (delete 'reset-gzip-timestamps)
1413 (add-after 'unpack 'skip-network-tests
1415 ;; These tests try to download audio/video files.
1416 (substitute* "test/query.jl"
1417 (("testset.*(MP4|OGG|MATROSKA).*" all)
1418 (string-append all "return\n")))
1419 (substitute* "test/loadsave.jl"
1420 (("testset.*CSVFiles.*" all)
1421 (string-append all "return\n")))
1422 ;; This test tries to download a Julia package.
1423 (substitute* "test/error_handling.jl"
1424 (("testset.*Not installed.*" all)
1425 (string-append all "return\n")))
1426 ;; This test tries to write to the store.
1427 ;; (Error says can't find User 0)
1428 (substitute* "test/runtests.jl"
1429 ((".*test_mimesave.*") "")))))))
1431 `(("julia-requires" ,julia-requires)))
1433 `(("julia-colortypes" ,julia-colortypes)
1434 ("julia-filepathsbase" ,julia-filepathsbase)
1435 ("julia-http" ,julia-http)))
1436 (home-page "https://github.com/JuliaIO/FileIO.jl")
1437 (synopsis "Main Package for IO, loading all different kind of files")
1438 (description "@code{FileIO} aims to provide a common framework for detecting
1439 file formats and dispatching to appropriate readers/writers. The two core
1440 functions in this package are called @code{load} and @code{save}, and offer
1441 high-level support for formatted files (in contrast with Julia's low-level
1442 @code{read} and @code{write}).")
1443 (license license:expat)))
1445 (define-public julia-filepathsbase
1447 (name "julia-filepathsbase")
1453 (url "https://github.com/rofinn/FilePathsBase.jl")
1454 (commit (string-append "v" version))))
1455 (file-name (git-file-name name version))
1457 (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
1458 (build-system julia-build-system)
1460 `(#:tests? #f)) ; Cycle with JLSO.jl
1461 (home-page "https://github.com/rofinn/FilePathsBase.jl")
1462 (synopsis "Filesystem path types in Julia")
1463 (description "@code{FilePathsBase.jl} provides a type based approach to
1464 working with filesystem paths in Julia.")
1465 (license license:expat)))
1467 (define-public julia-fillarrays
1469 (name "julia-fillarrays")
1475 (url "https://github.com/JuliaArrays/FillArrays.jl")
1476 (commit (string-append "v" version))))
1477 (file-name (git-file-name name version))
1479 (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz"))))
1480 (build-system julia-build-system)
1481 (inputs ;required by tests
1482 `(("julia-staticarrays" ,julia-staticarrays)))
1483 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
1484 (synopsis "Lazy matrix representation")
1485 (description "This package lazily represents matrices filled with
1486 a single entry, as well as identity matrices. This package exports the
1487 following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
1488 @code{Trues} and @code{Falses}.")
1489 (license license:expat)))
1491 (define-public julia-finitediff
1493 (name "julia-finitediff")
1499 (url "https://github.com/JuliaDiff/FiniteDiff.jl")
1500 (commit (string-append "v" version))))
1501 (file-name (git-file-name name version))
1503 (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq"))))
1504 (build-system julia-build-system)
1507 (modify-phases %standard-phases
1508 (add-before 'check 'pre-check
1510 ;; We don't want to run all the tests; the Downstream tests
1511 ;; try to download the package registry.
1512 (setenv "GROUP" "Core")
1515 `(("julia-arrayinterface" ,julia-arrayinterface)
1516 ("julia-requires" ,julia-requires)
1517 ("julia-staticarrays" ,julia-staticarrays)))
1519 `(("julia-bandedmatrices" ,julia-bandedmatrices)
1520 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
1521 ("julia-safetestsets" ,julia-safetestsets)))
1522 (home-page "https://github.com/JuliaDiff/FiniteDiff.jl")
1523 (synopsis "Calculations of gradients, Jacobians, and Hessians")
1524 (description "This package is for calculating derivatives, gradients,
1525 Jacobians, Hessians, etc. numerically. This library is for maximizing speed
1526 while giving a usable interface to end users in a way that specializes on array
1527 types and sparsity.")
1528 (license license:expat)))
1530 (define-public julia-finitedifferences
1532 (name "julia-finitedifferences")
1538 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
1539 (commit (string-append "v" version))))
1540 (file-name (git-file-name name version))
1542 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
1543 (build-system julia-build-system)
1545 `(("julia-benchmarktools" ,julia-benchmarktools)))
1547 `(("julia-chainrulescore" ,julia-chainrulescore)
1548 ("julia-richardson" ,julia-richardson)
1549 ("julia-staticarrays" ,julia-staticarrays)))
1550 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
1551 (synopsis "Estimates derivatives with finite differences")
1552 (description "This package calculates approximate derivatives numerically
1553 using finite difference.")
1554 (license license:expat)))
1556 (define-public julia-fixedpointnumbers
1558 (name "julia-fixedpointnumbers")
1564 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
1565 (commit (string-append "v" version))))
1566 (file-name (git-file-name name version))
1568 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
1569 (build-system julia-build-system)
1572 (modify-phases %standard-phases
1573 (add-after 'unpack 'disable-failing-test
1574 (lambda* (#:key outputs #:allow-other-keys)
1575 (substitute* "test/fixed.jl"
1576 ;; A deprecation warning is not thrown
1577 (("@test_logs.*:warn" all) (string-append "# " all)))
1579 (propagated-inputs `(("julia-compat" ,julia-compat)))
1580 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
1581 (synopsis "Fixed point types for Julia")
1582 (description "@code{FixedPointNumbers.jl} implements fixed-point number
1583 types for Julia. A fixed-point number represents a fractional, or
1584 non-integral, number. In contrast with the more widely known floating-point
1585 numbers, with fixed-point numbers the decimal point doesn't \"float\":
1586 fixed-point numbers are effectively integers that are interpreted as being
1587 scaled by a constant factor. Consequently, they have a fixed number of
1588 digits (bits) after the decimal (radix) point.")
1589 (license license:expat)))
1591 (define-public julia-formatting
1593 (name "julia-formatting")
1599 (url "https://github.com/JuliaIO/Formatting.jl")
1600 (commit (string-append "v" version))))
1601 (file-name (git-file-name name version))
1603 (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh"))))
1604 (build-system julia-build-system)
1605 (home-page "https://github.com/JuliaIO/Formatting.jl")
1606 (synopsis "Julia package to provide Python-like formatting support")
1607 (description "This package offers Python-style general formatting and
1608 c-style numerical formatting.")
1609 (license license:expat)))
1611 (define-public julia-forwarddiff
1613 (name "julia-forwarddiff")
1619 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
1620 (commit (string-append "v" version))))
1621 (file-name (git-file-name name version))
1623 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
1624 (build-system julia-build-system)
1625 (inputs ;required for tests
1626 `(("julia-calculus" ,julia-calculus)
1627 ("julia-difftests" ,julia-difftests)))
1629 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
1630 ("julia-diffresults" ,julia-diffresults)
1631 ("julia-diffrules" ,julia-diffrules)
1632 ("julia-nanmath" ,julia-nanmath)
1633 ("julia-specialfunctions" ,julia-specialfunctions)
1634 ("julia-staticarrays" ,julia-staticarrays)))
1635 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
1636 (synopsis "Methods to take multidimensional derivatives")
1637 (description "This package implements methods to take derivatives,
1638 gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
1639 functions (or any callable object, really) using forward mode automatic
1640 differentiation (AD).")
1641 (license license:expat)))
1643 (define-public julia-functionwrappers
1645 (name "julia-functionwrappers")
1651 (url "https://github.com/yuyichao/FunctionWrappers.jl")
1652 (commit (string-append "v" version))))
1653 (file-name (git-file-name name version))
1655 (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
1656 (build-system julia-build-system)
1659 (modify-phases %standard-phases
1660 (add-after 'unpack 'adjust-tests
1662 (substitute* "test/runtests.jl"
1663 (("testset \\\"Abstract.*" all)
1664 (string-append all "return\n"))))))))
1665 (home-page "https://github.com/yuyichao/FunctionWrappers.jl")
1666 (synopsis "Type stable and efficient wrapper of arbitrary functions")
1667 (description "This package provides a type stable and efficient wrapper of
1668 arbitrary functions.")
1669 (license license:expat)))
1671 (define-public julia-fuzzycompletions
1673 (name "julia-fuzzycompletions")
1679 (url "https://github.com/JunoLab/FuzzyCompletions.jl")
1680 (commit (string-append "v" version))))
1681 (file-name (git-file-name name version))
1683 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
1684 (build-system julia-build-system)
1687 (modify-phases %standard-phases
1688 (add-after 'unpack 'skip-failing-test
1690 (substitute* "test/runtests.jl"
1691 ((".*RPLE.*") "")))))))
1692 (home-page "https://github.com/JunoLab/FuzzyCompletions.jl")
1693 (synopsis "Fuzzy completion provider for Julia")
1695 "FuzzyCompletions provides fuzzy completions for a Julia runtime session.")
1696 (license license:expat)))
1698 (define-public julia-genericlinearalgebra
1700 (name "julia-genericlinearalgebra")
1706 (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1707 (commit (string-append "v" version))))
1708 (file-name (git-file-name name version))
1710 (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
1711 (build-system julia-build-system)
1714 (modify-phases %standard-phases
1715 (add-after 'unpack 'adjust-test-suite
1717 (substitute* "test/runtests.jl"
1718 ((".*lapack.*") "")))))))
1720 `(("julia-quaternions" ,julia-quaternions)))
1721 (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1722 (synopsis "Generic numerical linear algebra")
1723 (description "The purpose of this package is partly to extend linear algebra
1724 functionality in base to cover generic element types, e.g. @code{BigFloat} and
1725 @code{Quaternion}, and partly to be a place to experiment with fast linear
1726 algebra routines written in Julia (except for optimized BLAS).")
1727 (license license:expat)))
1729 (define-public julia-genericschur
1731 (name "julia-genericschur")
1737 (url "https://github.com/RalphAS/GenericSchur.jl")
1738 (commit (string-append "v" version))))
1739 (file-name (git-file-name name version))
1741 (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d"))))
1742 (build-system julia-build-system)
1745 (modify-phases %standard-phases
1746 (add-after 'unpack 'adjust-test-suite
1748 (substitute* "test/complex.jl"
1749 ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
1750 (("A = _example") "#A = _example")
1751 (("schurtest\\(A,20\\)") ""))
1752 (substitute* "test/runtests.jl"
1753 ;; Test errors relating to liblapack.so
1754 ((".*complex\\.jl.*") "")
1755 ((".*real\\.jl.*") "")
1756 ;; GenericSVD is deprecated upstream
1757 ((".*gordschur\\.jl.*") "")))))))
1758 (home-page "https://github.com/RalphAS/GenericSchur.jl")
1759 (synopsis "Schur decomposition of matrices with generic element types")
1760 (description "The Schur decomposition is the workhorse for eigensystem
1761 analysis of dense matrices. The diagonal eigen-decomposition of normal
1762 (especially Hermitian) matrices is an important special case, but for non-normal
1763 matrices the Schur form is often more useful.")
1764 (license license:expat)))
1766 (define-public julia-graphics
1768 (name "julia-graphics")
1774 (url "https://github.com/JuliaGraphics/Graphics.jl")
1775 (commit (string-append "v" version))))
1776 (file-name (git-file-name name version))
1778 (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn"))))
1779 (build-system julia-build-system)
1781 `(("julia-colors" ,julia-colors)
1782 ("julia-nanmath" ,julia-nanmath)))
1783 (home-page "https://github.com/JuliaGraphics/Graphics.jl")
1784 (synopsis "Base graphics in Julia")
1785 (description "@code{Graphics.jl} is an abstraction layer for graphical
1786 operations in Julia.")
1787 (license license:expat)))
1789 (define-public julia-gumbo
1791 (name "julia-gumbo")
1797 (url "https://github.com/JuliaWeb/Gumbo.jl")
1798 (commit (string-append "v" version))))
1799 (file-name (git-file-name name version))
1801 (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
1802 (build-system julia-build-system)
1804 `(("julia-abstracttrees" ,julia-abstracttrees)
1805 ("julia-gumbo-jll" ,julia-gumbo-jll)))
1806 (home-page "https://github.com/JuliaWeb/Gumbo.jl")
1807 (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
1808 (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
1809 library for parsing HTML.")
1810 (license license:expat)))
1812 (define-public julia-http
1820 (url "https://github.com/JuliaWeb/HTTP.jl")
1821 (commit (string-append "v" version))))
1822 (file-name (git-file-name name version))
1824 (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk"))))
1825 (build-system julia-build-system)
1828 (modify-phases %standard-phases
1829 (add-before 'install 'disable-network-tests
1831 (substitute* "test/runtests.jl"
1832 (("\"async.jl") "# \"async.jl")
1833 (("\"client.jl") "# \"client.jl"))
1834 (substitute* "test/aws4.jl"
1835 (("@testset.*HTTP.request with AWS authentication.*" all)
1836 (string-append all "return\n")))
1837 (substitute* "test/insert_layers.jl"
1838 (("@testset.*Inserted final layer runs handler.*" all)
1839 (string-append all "return\n")))
1840 (substitute* "test/multipart.jl"
1841 (("@testset \"Setting of Content-Type.*" all)
1842 (string-append all "return\n"))
1843 (("@testset \"Deprecation of .*" all)
1844 (string-append all "return\n")))
1845 (substitute* "test/websockets.jl"
1846 (("@testset.*External Host.*" all)
1847 (string-append all "return\n")))
1848 (substitute* "test/messages.jl"
1849 (("@testset.*Read methods.*" all)
1850 (string-append all "return\n"))
1851 (("@testset.*Body - .*" all)
1852 (string-append all "return\n"))
1853 (("@testset.*Write to file.*" all)
1854 (string-append all "return\n")))
1857 `(("julia-inifile" ,julia-inifile)
1858 ("julia-mbedtls" ,julia-mbedtls)
1859 ("julia-uris" ,julia-uris)))
1860 ;; required for tests
1862 `(("julia-json" ,julia-json)
1863 ("julia-bufferedstreams" ,julia-bufferedstreams)))
1864 (home-page "https://juliaweb.github.io/HTTP.jl/")
1865 (synopsis "HTTP support for Julia")
1866 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
1867 implementing both a client and a server.")
1868 (license license:expat)))
1870 (define-public julia-identityranges
1872 (name "julia-identityranges")
1878 (url "https://github.com/JuliaArrays/IdentityRanges.jl")
1879 (commit (string-append "v" version))))
1880 (file-name (git-file-name name version))
1882 (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml"))))
1883 (build-system julia-build-system)
1885 `(("julia-offsetarrays" ,julia-offsetarrays)))
1886 (home-page "https://github.com/JuliaArrays/IdentityRanges.jl")
1887 (synopsis "Ranges that preserve indices of views")
1888 (description "@code{IdentityRanges} are Julia-language a helper type for
1889 creating \"views\" of arrays. They are a custom type of AbstractUnitRange that
1890 makes it easy to preserve the indices of array views. The key property of an
1891 @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the
1892 type/package), and that they support arbitrary start/stop indices (i.e., not
1893 just starting at 1).")
1894 (license license:expat)))
1896 (define-public julia-ifelse
1898 (name "julia-ifelse")
1904 (url "https://github.com/sciml/ifelse.jl")
1905 (commit (string-append "v" version))))
1906 (file-name (git-file-name name version))
1908 (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
1909 (build-system julia-build-system)
1910 (home-page "https://github.com/sciml/ifelse.jl")
1911 (synopsis "Function form of the if-else conditional statement")
1912 (description "This package provides a convenient function form of the
1913 conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
1914 (license license:expat)))
1916 (define-public julia-imageaxes
1918 (name "julia-imageaxes")
1924 (url "https://github.com/JuliaImages/ImageAxes.jl")
1925 (commit (string-append "v" version))))
1926 (file-name (git-file-name name version))
1928 (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd"))))
1929 (build-system julia-build-system)
1931 `(("julia-axisarrays" ,julia-axisarrays)
1932 ("julia-imagecore" ,julia-imagecore)
1933 ("julia-reexport" ,julia-reexport)
1934 ("julia-simpletraits" ,julia-simpletraits)))
1936 `(("julia-unitful" ,julia-unitful)))
1937 (home-page "https://github.com/JuliaImages/ImageAxes.jl")
1938 (synopsis "Julia package for giving \"meaning\" to the axes of an image")
1939 (description "This small package supports the representation of images as
1940 @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with
1941 such arrays easy via traits.")
1942 (license license:expat)))
1944 (define-public julia-imagebase
1946 (name "julia-imagebase")
1952 (url "https://github.com/JuliaImages/ImageBase.jl")
1953 (commit (string-append "v" version))))
1954 (file-name (git-file-name name version))
1956 (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
1957 (build-system julia-build-system)
1959 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1961 `(("julia-imagecore" ,julia-imagecore)
1962 ("julia-reexport" ,julia-reexport)))
1964 ; `(("julia-imagemagick" ,julia-imagemagick)
1965 ; ("julia-offsetarrays" ,julia-offsetarrays)
1966 ; ("julia-testimages" ,julia-testimages)))
1967 (home-page "https://github.com/JuliaImages/ImageBase.jl")
1968 (synopsis "Wrapper package around ImageCore")
1969 (description "This is a twin package to @code{ImageCore} with functions that
1970 are used among many of the packages in JuliaImages. The main purpose of this
1971 package is to reduce unnecessary compilation overhead from external
1973 (license license:expat)))
1975 (define-public julia-imagecore
1977 (name "julia-imagecore")
1983 (url "https://github.com/JuliaImages/ImageCore.jl")
1984 (commit (string-append "v" version))))
1985 (file-name (git-file-name name version))
1987 (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq"))))
1988 (build-system julia-build-system)
1990 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
1992 `(("julia-abstractffts" ,julia-abstractffts)
1993 ("julia-colors" ,julia-colors)
1994 ("julia-colorvectorspace" ,julia-colorvectorspace)
1995 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
1996 ("julia-graphics" ,julia-graphics)
1997 ("julia-mappedarrays" ,julia-mappedarrays)
1998 ("julia-mosaicviews" ,julia-mosaicviews)
1999 ("julia-offsetarrays" ,julia-offsetarrays)
2000 ("julia-paddedviews" ,julia-paddedviews)
2001 ("julia-reexport" ,julia-reexport)))
2003 ; `(("julia-aqua" ,julia-aqua)
2004 ; ("julia-colorvectorspace" ,julia-colorvectorspace)
2005 ; ("julia-documenter" ,julia-documenter)
2006 ; ("julia-fftw" ,julia-fftw)
2007 ; ("julia-imageinterminal" ,julia-imageinterminal)
2008 ; ("julia-imagemagick" ,julia-imagemagick)
2009 ; ("julia-referencetests" ,julia-referencetests)
2010 ; ("julia-statistics" ,julia-statistics)))
2011 (home-page "https://github.com/JuliaImages/ImageCore.jl")
2012 (synopsis "Julia types for representing images")
2013 (description "@code{ImageCore} is the lowest-level component of the system
2014 of packages designed to support image processing and computer vision.")
2015 (license license:expat)))
2017 (define-public julia-imageinterminal
2019 (name "julia-imageinterminal")
2025 (url "https://github.com/JuliaImages/ImageInTerminal.jl")
2026 (commit (string-append "v" version))))
2027 (file-name (git-file-name name version))
2029 (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
2030 (build-system julia-build-system)
2032 `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
2034 `(("julia-crayons" ,julia-crayons)
2035 ("julia-imagebase" ,julia-imagebase)
2036 ("julia-imagecore" ,julia-imagecore)
2037 ("julia-requires" ,julia-requires)))
2039 ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations)
2040 ; ("julia-imagemagick" ,julia-imagemagick)
2041 ; ("julia-imagetransformations" ,julia-imagetransformations)
2042 ; ("julia-offsetarrays" ,julia-offsetarrays)
2043 ; ("julia-referencetests" ,julia-referencetests)
2044 ; ("julia-rotations" ,julia-rotations)
2045 ; ("julia-sparsearrays" ,julia-sparsearrays)
2046 ; ("julia-testimages" ,julia-testimages)))
2047 (home-page "https://github.com/JuliaImages/ImageInTerminal.jl")
2048 (synopsis "Julia package for displaying images in the terminal")
2049 (description "@code{ImageInTerminal.jl} is a drop-in package that once
2050 imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays
2051 (i.e. Images) are displayed in the interactive REPL. The displayed images will
2052 be downscaled to fit into the size of your active terminal session.")
2053 (license license:expat)))
2055 (define-public julia-imagemagick
2057 (name "julia-imagemagick")
2063 (url "https://github.com/JuliaIO/ImageMagick.jl")
2064 (commit (string-append "v" version))))
2065 (file-name (git-file-name name version))
2067 (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
2068 (build-system julia-build-system)
2071 (modify-phases %standard-phases
2072 (add-after 'unpack 'skip-failing-test
2074 ;; These tests try to download from the imagemagick.org
2075 (substitute* "test/runtests.jl"
2076 ((".*readremote\\.jl.*") ""))
2077 ;; Tests with the color gray are hard.
2078 (substitute* "test/constructed_images.jl"
2079 (("test (b == aa)" _ test) (string-append "test_nowarn " test))
2080 (("test (B == map)" _ test) (string-append "test_nowarn " test)))
2083 `(("julia-fileio" ,julia-fileio)
2084 ("julia-imagecore" ,julia-imagecore)
2085 ("julia-imagemagick-jll" ,julia-imagemagick-jll)))
2087 `(("julia-colors" ,julia-colors)
2088 ("julia-colorvectorspace" ,julia-colorvectorspace)
2089 ("julia-imagemetadata" ,julia-imagemetadata)
2090 ("julia-imageshow" ,julia-imageshow)
2091 ("julia-imagetransformations" ,julia-imagetransformations)
2092 ("julia-indirectarrays" ,julia-indirectarrays)
2093 ("julia-offsetarrays" ,julia-offsetarrays)
2094 ("julia-zipfile" ,julia-zipfile)))
2095 (home-page "https://github.com/JuliaIO/ImageMagick.jl")
2096 (synopsis "Thin wrapper for ImageMagick")
2097 (description "This package provides a wrapper around ImageMagick version 6.
2098 It was split off from @code{Images.jl} to make image I/O more modular.")
2099 (license license:expat)))
2101 (define-public julia-imagemetadata
2103 (name "julia-imagemetadata")
2109 (url "https://github.com/JuliaImages/ImageMetadata.jl")
2110 (commit (string-append "v" version))))
2111 (file-name (git-file-name name version))
2113 (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1"))))
2114 (build-system julia-build-system)
2116 `(("julia-axisarrays" ,julia-axisarrays)
2117 ("julia-imageaxes" ,julia-imageaxes)
2118 ("julia-imagecore" ,julia-imagecore)
2119 ("julia-indirectarrays" ,julia-indirectarrays)))
2121 `(("julia-offsetarrays" ,julia-offsetarrays)
2122 ("julia-simpletraits" ,julia-simpletraits)
2123 ("julia-unitful" ,julia-unitful)))
2124 (home-page "https://github.com/JuliaImages/ImageMetadata.jl")
2125 (synopsis "Julia package for images having metadata")
2126 (description "@code{ImageMetadata} is a simple package providing utilities
2127 for working with images that have metadata attached. For example, you might
2128 want to associate an image with the date on which the picture was taken, or an
2129 MRI scan with patient data, or an astronomical image with sky coordinates and
2130 information about the detector used to acquire the image.")
2131 (license license:expat)))
2133 (define-public julia-imageshow
2135 (name "julia-imageshow")
2141 (url "https://github.com/JuliaImages/ImageShow.jl")
2142 (commit (string-append "v" version))))
2143 (file-name (git-file-name name version))
2145 (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
2146 (build-system julia-build-system)
2148 `(#:tests? #f)) ; cycle with ImageMagick.jl.
2150 `(("julia-fileio" ,julia-fileio)
2151 ("julia-imagebase" ,julia-imagebase)
2152 ("julia-imagecore" ,julia-imagecore)
2153 ("julia-offsetarrays" ,julia-offsetarrays)
2154 ("julia-stackviews" ,julia-stackviews)))
2156 ; `(("julia-imagedistances" ,julia-imagedistances)
2157 ; ("julia-imagemagick" ,julia-imagemagick)
2158 ; ("julia-suppressor" ,julia-suppressor)
2159 ; ("julia-testimages" ,julia-testimages)))
2160 (home-page "https://github.com/JuliaImages/ImageShow.jl")
2162 "Inline graphical display of images in Julia graphical environments")
2163 (description "This package implements image @code{show} methods suitable
2164 for graphical platforms such as IJulia. It is intended to provide convenient
2165 inline presentation of greyscale or color images.")
2166 (license license:expat)))
2168 (define-public julia-imagetransformations
2170 (name "julia-imagetransformations")
2176 (url "https://github.com/JuliaImages/ImageTransformations.jl")
2177 (commit (string-append "v" version))))
2178 (file-name (git-file-name name version))
2180 (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
2181 (build-system julia-build-system)
2183 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2185 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2186 ("julia-colorvectorspace" ,julia-colorvectorspace)
2187 ("julia-coordinatetransformations" ,julia-coordinatetransformations)
2188 ("julia-identityranges" ,julia-identityranges)
2189 ("julia-imagecore" ,julia-imagecore)
2190 ("julia-interpolations" ,julia-interpolations)
2191 ("julia-offsetarrays" ,julia-offsetarrays)
2192 ("julia-rotations" ,julia-rotations)
2193 ("julia-staticarrays" ,julia-staticarrays)))
2195 ; `(("julia-imagemagick" ,julia-imagemagick)
2196 ; ("julia-referencetests" ,julia-referencetests)
2197 ; ("julia-testimages" ,julia-testimages)))
2198 (home-page "https://github.com/JuliaImages/ImageTransformations.jl")
2199 (synopsis "Geometric transformations on images for Julia")
2200 (description "This package provides support for image resizing, image
2201 rotation, and other spatial transformations of arrays.")
2202 (license license:expat)))
2204 (define-public julia-indexing
2206 (name "julia-indexing")
2212 (url "https://github.com/andyferris/Indexing.jl")
2213 (commit (string-append "v" version))))
2214 (file-name (git-file-name name version))
2216 (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx"))))
2217 (build-system julia-build-system)
2218 (home-page "https://github.com/andyferris/Indexing.jl")
2219 (synopsis "Generalized indexing for Julia")
2220 (description "This package defines functions for getting multiple indices
2221 out of dictionaries, tuples, etc, extending this ability beyond
2222 @code{AbstractArray}.")
2223 (license license:expat)))
2225 (define-public julia-indirectarrays
2227 (name "julia-indirectarrays")
2233 (url "https://github.com/JuliaArrays/IndirectArrays.jl")
2234 (commit (string-append "v" version))))
2235 (file-name (git-file-name name version))
2237 (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s"))))
2238 (build-system julia-build-system)
2240 `(("julia-colors" ,julia-colors)
2241 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2242 ("julia-mappedarrays" ,julia-mappedarrays)))
2243 (home-page "https://github.com/JuliaArrays/IndirectArrays.jl")
2244 (synopsis "Julia implementation of indexed arrays")
2245 (description "An @code{IndirectArray} is one that encodes data using a
2246 combination of an @code{index} and a @code{value} table. Each element is
2247 assigned its own index, which is used to retrieve the value from the
2248 @code{value} table. Among other uses, @code{IndirectArrays} can represent
2249 indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
2250 (license license:expat)))
2252 (define-public julia-inifile
2254 (name "julia-inifile")
2260 (url "https://github.com/JuliaIO/IniFile.jl")
2261 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
2262 (file-name (git-file-name name version))
2264 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
2265 (build-system julia-build-system)
2266 (home-page "https://github.com/JuliaIO/IniFile.jl")
2267 (synopsis "Reading Windows-style INI files")
2268 (description "This is a Julia package that defines an IniFile type that
2269 interfaces with @file{.ini} files.")
2270 (license license:expat)))
2272 (define-public julia-interpolations
2274 (name "julia-interpolations")
2280 (url "https://github.com/JuliaMath/Interpolations.jl")
2281 (commit (string-append "v" version))))
2282 (file-name (git-file-name name version))
2284 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
2285 (build-system julia-build-system)
2287 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2288 ("julia-offsetarrays" ,julia-offsetarrays)
2289 ("julia-ratios" ,julia-ratios)
2290 ("julia-requires" ,julia-requires)
2291 ("julia-staticarrays" ,julia-staticarrays)
2292 ("julia-woodburymatrices" ,julia-woodburymatrices)))
2294 `(("julia-dualnumbers" ,julia-dualnumbers)
2295 ("julia-forwarddiff" ,julia-forwarddiff)
2296 ("julia-offsetarrays" ,julia-offsetarrays)
2297 ("julia-unitful" ,julia-unitful)
2298 ("julia-zygote" ,julia-zygote)))
2299 (home-page "https://github.com/JuliaMath/Interpolations.jl")
2300 (synopsis "Continuous interpolation of discrete datasets")
2301 (description "This package implements a variety of interpolation schemes for
2302 the Julia language. It has the goals of ease-of-use, broad algorithmic support,
2303 and exceptional performance.")
2304 (license license:expat)))
2306 (define-public julia-intervalsets
2308 (name "julia-intervalsets")
2314 (url "https://github.com/JuliaMath/IntervalSets.jl")
2315 (commit (string-append "v" version))))
2316 (file-name (git-file-name name version))
2318 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
2319 (build-system julia-build-system)
2321 `(("julia-ellipsisnotation" ,julia-ellipsisnotation)))
2323 `(("julia-offsetarrays" ,julia-offsetarrays)))
2324 (home-page "https://github.com/JuliaMath/IntervalSets.jl")
2325 (synopsis "Interval Sets for Julia")
2326 (description "This package is intended to implement a \"minimal\" foundation
2327 for intervals upon which other packages might build. In particular, we
2328 encourage type-piracy for the reason that only one interval package can
2329 unambiguously define the @code{..} and @code{±} operators.")
2330 (license license:expat)))
2332 (define-public julia-invertedindices
2334 (name "julia-invertedindices")
2340 (url "https://github.com/mbauman/InvertedIndices.jl")
2341 (commit (string-append "v" version))))
2342 (file-name (git-file-name name version))
2344 (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46"))))
2345 (build-system julia-build-system)
2347 `(("julia-offsetarrays" ,julia-offsetarrays)))
2348 (home-page "https://github.com/mbauman/InvertedIndices.jl")
2349 (synopsis "Index type that allows for inverted selections")
2350 (description "This package just exports one type: the @code{InvertedIndex},
2351 or @code{Not} for short. It can wrap any supported index type and may be used
2352 as an index into any @code{AbstractArray} subtype, including OffsetArrays.")
2353 (license license:expat)))
2355 (define-public julia-iocapture
2357 (name "julia-iocapture")
2363 (url "https://github.com/JuliaDocs/IOCapture.jl")
2364 (commit (string-append "v" version))))
2365 (file-name (git-file-name name version))
2367 (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb"))))
2368 (build-system julia-build-system)
2369 (home-page "https://github.com/JuliaDocs/IOCapture.jl")
2370 (synopsis "Capture standard output and error streams")
2371 (description "This package provides the @code{IOCapture.capture(f)}
2372 function, which captures the standard output and standard error, and returns it
2373 as a string together with the return value.")
2374 (license license:expat)))
2376 (define-public julia-irtools
2378 (name "julia-irtools")
2384 (url "https://github.com/FluxML/IRTools.jl")
2385 (commit (string-append "v" version))))
2386 (file-name (git-file-name name version))
2388 (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql"))))
2390 '(#:tests? #f)) ;require Documenter, not packaged yet
2391 (build-system julia-build-system)
2393 `(("julia-macrotools" ,julia-macrotools)))
2394 (home-page "https://github.com/FluxML/IRTools.jl")
2395 (synopsis "Simple and flexible IR format")
2396 (description "This package provides a simple and flexible IR format,
2397 expressive enough to work with both lowered and typed Julia code, as well as
2398 external IRs. It can be used with Julia metaprogramming tools such as
2400 (license license:expat)))
2402 (define-public julia-iteratorinterfaceextensions
2404 (name "julia-iteratorinterfaceextensions")
2410 (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2411 (commit (string-append "v" version))))
2412 (file-name (git-file-name name version))
2414 (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"))))
2415 (build-system julia-build-system)
2416 (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2417 (synopsis "Traits for Julia iterators")
2418 (description "IteratorInterfaceExtensions defines a small number of
2419 extensions to the iterator interface.")
2420 (license license:expat)))
2422 (define-public julia-itertools
2424 (name "julia-itertools")
2430 (url "https://github.com/JuliaCollections/IterTools.jl")
2431 (commit (string-append "v" version))))
2432 (file-name (git-file-name name version))
2434 (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq"))))
2435 (build-system julia-build-system)
2436 (home-page "https://github.com/JuliaCollections/IterTools.jl")
2437 (synopsis "Common functional iterator patterns")
2439 "Common functional iterator patterns (formerly @code{Iterators.jl}).")
2440 (license license:expat)))
2442 (define-public julia-json
2450 (url "https://github.com/JuliaIO/JSON.jl")
2451 (commit (string-append "v" version))))
2452 (file-name (git-file-name name version))
2454 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
2455 (build-system julia-build-system)
2457 `(("julia-datastructures" ,julia-datastructures)
2458 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2459 ("julia-parsers" ,julia-parsers)
2460 ("julia-offsetarrays" ,julia-offsetarrays)))
2461 (home-page "https://github.com/JuliaIO/JSON.jl")
2462 (synopsis "JSON parsing and printing library for Julia")
2463 (description "@code{JSON.jl} is a pure Julia module which supports parsing
2464 and printing JSON documents.")
2465 (license license:expat)))
2467 (define-public julia-json3
2469 (name "julia-json3")
2475 (url "https://github.com/quinnj/JSON3.jl")
2476 (commit (string-append "v" version))))
2477 (file-name (git-file-name name version))
2479 (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17"))))
2480 (build-system julia-build-system)
2482 `(("julia-parsers" ,julia-parsers)
2483 ("julia-structtypes" ,julia-structtypes)))
2484 (home-page "https://github.com/quinnj/JSON3.jl")
2485 (synopsis "JSON package for Julia")
2486 (description "This package provides another JSON package for Julia, with a
2487 focus on speed and slick struct mapping.")
2488 (license license:expat)))
2490 (define-public julia-latexstrings
2492 (name "julia-latexstrings")
2498 (url "https://github.com/stevengj/LaTeXStrings.jl")
2499 (commit (string-append "v" version))))
2500 (file-name (git-file-name name version))
2502 (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp"))))
2503 (build-system julia-build-system)
2505 `(("julia-documenter" ,julia-documenter)))
2506 (home-page "https://github.com/stevengj/LaTeXStrings.jl")
2507 (synopsis "Input and display of LaTeX equation strings")
2508 (description "This is a small package to make it easier to type LaTeX
2509 equations in string literals in the Julia language.")
2510 (license license:expat)))
2512 (define-public julia-lazyarrays
2514 (name "julia-lazyarrays")
2520 (url "https://github.com/JuliaArrays/LazyArrays.jl")
2521 (commit (string-append "v" version))))
2522 (file-name (git-file-name name version))
2524 (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5"))))
2525 (build-system julia-build-system)
2527 `(("julia-arraylayouts" ,julia-arraylayouts)
2528 ("julia-fillarrays" ,julia-fillarrays)
2529 ("julia-macrotools" ,julia-macrotools)
2530 ("julia-matrixfactorizations" ,julia-matrixfactorizations)
2531 ("julia-staticarrays" ,julia-staticarrays)))
2533 `(("julia-tracker" ,julia-tracker)))
2534 (home-page "https://github.com/JuliaArrays/LazyArrays.jl")
2535 (synopsis "Lazy arrays and linear algebra")
2536 (description "This package supports lazy analogues of array operations like
2537 @code{vcat}, @code{hcat}, and multiplication. This helps with the
2538 implementation of matrix-free methods for iterative solvers.")
2539 (license license:expat)))
2541 (define-public julia-logexpfunctions
2543 (name "julia-logexpfunctions")
2549 (url "https://github.com/JuliaStats/LogExpFunctions.jl")
2550 (commit (string-append "v" version))))
2551 (file-name (git-file-name name version))
2553 (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n"))))
2554 (build-system julia-build-system)
2556 `(("julia-docstringextensions" ,julia-docstringextensions)))
2558 `(("julia-offsetarrays" ,julia-offsetarrays)))
2559 (home-page "https://github.com/JuliaStats/LogExpFunctions.jl")
2560 (synopsis "Special functions based on @code{log} and @code{exp}")
2561 (description "Various special functions based on log and exp moved from
2562 @code{StatsFuns.jl} into a separate package, to minimize dependencies. These
2563 functions only use native Julia code, so there is no need to depend on
2564 @code{librmath} or similar libraries.")
2565 (license license:expat)))
2567 (define-public julia-macrotools
2569 (name "julia-macrotools")
2575 (url "https://github.com/FluxML/MacroTools.jl")
2576 (commit (string-append "v" version))))
2577 (file-name (git-file-name name version))
2579 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
2580 (build-system julia-build-system)
2581 (home-page "https://fluxml.ai/MacroTools.jl")
2582 (synopsis "Tools for working with Julia code and expressions")
2583 (description "This library provides tools for working with Julia code and
2584 expressions. This includes a template-matching system and code-walking tools
2585 that let you do deep transformations of code.")
2586 (license license:expat)))
2588 (define-public julia-mappedarrays
2590 (name "julia-mappedarrays")
2596 (url "https://github.com/JuliaArrays/MappedArrays.jl")
2597 (commit (string-append "v" version))))
2598 (file-name (git-file-name name version))
2600 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
2601 (build-system julia-build-system)
2603 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
2605 `(("julia-colortypes" ,julia-colortypes)
2606 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2607 ("julia-offsetarrays" ,julia-offsetarrays)))
2608 (home-page "https://github.com/JuliaArrays/MappedArrays.jl")
2609 (synopsis "Lazy in-place transformations of arrays")
2610 (description "This package implements \"lazy\" in-place elementwise
2611 transformations of arrays for the Julia programming language. Explicitly, it
2612 provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a
2613 specified (but arbitrary) function f, without ever having to compute M
2614 explicitly (in the sense of allocating storage for M). The name of the package
2615 comes from the fact that @code{M == map(f, A)}.")
2616 (license license:expat)))
2618 (define-public julia-matrixfactorizations
2620 (name "julia-matrixfactorizations")
2626 (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2627 (commit (string-append "v" version))))
2628 (file-name (git-file-name name version))
2630 (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb"))))
2631 (build-system julia-build-system)
2634 (modify-phases %standard-phases
2635 (add-after 'unpack 'skip-failing-test
2637 ;; Tests with math functions are hard.
2638 (substitute* "test/test_ul.jl"
2639 (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
2640 ;; Also skip the REPL test.
2641 (("test String") "test_nowarn String"))
2644 `(("julia-arraylayouts" ,julia-arraylayouts)))
2645 (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2646 (synopsis "Julia package to contain non-standard matrix factorizations")
2647 (description "A Julia package to contain non-standard matrix factorizations.
2648 At the moment it implements the QL, RQ, and UL factorizations, a combined
2649 Cholesky factorization with inverse, and polar decompositions. In the future it
2650 may include other factorizations such as the LQ factorization.")
2651 (license license:expat)))
2653 (define-public julia-mbedtls
2655 (name "julia-mbedtls")
2661 (url "https://github.com/JuliaLang/MbedTLS.jl")
2662 (commit (string-append "v" version))))
2663 (file-name (git-file-name name version))
2665 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
2666 (build-system julia-build-system)
2669 (modify-phases %standard-phases
2670 (add-before 'install 'disable-network-tests
2671 ;; Tries to connect to httpbin.org
2673 (substitute* "test/runtests.jl"
2674 (("testhost =") "return #"))
2676 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
2677 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
2678 (synopsis "Apache's mbed TLS library wrapper")
2679 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
2680 TLS} and cryptography C library for Julia.")
2681 (license license:expat)))
2683 (define-public julia-measurements
2685 (name "julia-measurements")
2691 (url "https://github.com/JuliaPhysics/Measurements.jl")
2692 (commit (string-append "v" version))))
2693 (file-name (git-file-name name version))
2695 (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
2696 (build-system julia-build-system)
2698 `(("julia-calculus" ,julia-calculus)
2699 ("julia-recipesbase" ,julia-recipesbase)
2700 ("julia-requires" ,julia-requires)))
2702 `(("julia-quadgk" ,julia-quadgk)
2703 ("julia-specialfunctions" ,julia-specialfunctions)
2704 ("julia-unitful" ,julia-unitful)))
2705 (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
2706 (synopsis "Error propagation calculator and library")
2707 (description "@code{Measurements.jl} is an error propagation calculator and
2708 library for physical measurements. It supports real and complex numbers with
2709 uncertainty, arbitrary precision calculations, operations with arrays, and
2710 numerical integration. The linear error propagation theory is employed to
2711 propagate the errors.")
2712 (license license:expat)))
2714 (define-public julia-measures
2716 (name "julia-measures")
2722 (url "https://github.com/JuliaGraphics/Measures.jl")
2723 (commit (string-append "v" version))))
2724 (file-name (git-file-name name version))
2726 (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l"))))
2727 (build-system julia-build-system)
2728 (home-page "https://github.com/JuliaGraphics/Measures.jl")
2729 (synopsis "Unified measure and coordinates types")
2730 (description "This library generalizes and unifies the notion of measures
2731 used in Compose, Compose3D, and Escher. It allows building up and representing
2732 expressions involving differing types of units that are then evaluated,
2733 resolving them into absolute units.")
2734 (license license:expat)))
2736 (define-public julia-missings
2738 (name "julia-missings")
2744 (url "https://github.com/JuliaData/Missings.jl")
2745 (commit (string-append "v" version))))
2746 (file-name (git-file-name name version))
2748 (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5"))))
2749 (build-system julia-build-system)
2751 `(("julia-dataapi" ,julia-dataapi)))
2752 (home-page "https://github.com/JuliaData/Missings.jl")
2753 (synopsis "Additional missing value support for Julia")
2754 (description "This package provides additional functionality for working
2755 with @code{missing} values in Julia.")
2756 (license license:expat)))
2758 (define-public julia-mlstyle
2760 (name "julia-mlstyle")
2766 (url "https://github.com/thautwarm/MLStyle.jl")
2767 (commit (string-append "v" version))))
2768 (file-name (git-file-name name version))
2770 (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
2771 (build-system julia-build-system)
2773 `(("julia-datastructures" ,julia-datastructures)))
2774 (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
2775 (synopsis "Julia functional programming infrastructures")
2776 (description "This package provides consistent and extensible functional
2777 programming infrastructures, and metaprogramming facilities.")
2778 (license license:expat)))
2780 (define-public julia-mocking
2782 (name "julia-mocking")
2788 (url "https://github.com/invenia/Mocking.jl")
2789 (commit (string-append "v" version))))
2790 (file-name (git-file-name name version))
2792 (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg"))))
2793 (build-system julia-build-system)
2795 `(("julia-compat" ,julia-compat)
2796 ("julia-exprtools" ,julia-exprtools)))
2797 (home-page "https://github.com/invenia/Mocking.jl")
2798 (synopsis "Overload Julia function calls")
2799 (description "The purpose of this package is to allow Julia function calls
2800 to be temporarily overloaded for the purpose of testing.")
2801 (license license:expat)))
2803 (define-public julia-mosaicviews
2805 (name "julia-mosaicviews")
2811 (url "https://github.com/JuliaArrays/MosaicViews.jl")
2812 (commit (string-append "v" version))))
2813 (file-name (git-file-name name version))
2815 (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
2816 (build-system julia-build-system)
2818 `(#:tests? #f)) ; Cycle with ImageCore.jl
2820 `(("julia-mappedarrays" ,julia-mappedarrays)
2821 ("julia-paddedviews" ,julia-paddedviews)
2822 ("julia-stackviews" ,julia-stackviews)))
2824 ; `(("julia-colorvectorspace" ,julia-colorvectorspace)
2825 ; ("julia-imagecore" ,julia-imagecore)))
2826 (home-page "https://github.com/JuliaArrays/MosaicViews.jl")
2828 "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices")
2829 (description "When visualizing images, it is not uncommon to provide a 2D
2830 view of different image sources. For example, comparing multiple images of
2831 different sizes, getting a preview of machine learning dataset. This package
2832 aims to provide easy-to-use tools for such tasks.")
2833 (license license:expat)))
2835 (define-public julia-msgpack
2837 (name "julia-msgpack")
2843 (url "https://github.com/JuliaIO/MsgPack.jl")
2844 (commit (string-append "v" version))))
2845 (file-name (git-file-name name version))
2847 (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
2848 (build-system julia-build-system)
2849 (home-page "https://github.com/JuliaIO/MsgPack.jl")
2850 (synopsis "Julia MsgPack implementation")
2851 (description "@code{MsgPack.jl} is a MessagePack implementation in pure
2852 Julia, with type-driven, overloadable packing/unpacking functionality.")
2853 (license license:expat)))
2855 (define-public julia-mutablearithmetics
2857 (name "julia-mutablearithmetics")
2863 (url "https://github.com/jump-dev/MutableArithmetics.jl")
2864 (commit (string-append "v" version))))
2865 (file-name (git-file-name name version))
2867 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f"))))
2868 (build-system julia-build-system)
2870 `(("julia-offsetarrays" ,julia-offsetarrays)))
2871 (home-page "https://github.com/jump-dev/MutableArithmetics.jl")
2872 (synopsis "Interface for arithmetics on mutable types in Julia")
2873 (description "MutableArithmetics is a Julia package which allows:
2875 @item mutable types to implement mutable arithmetics
2876 @item algorithms that could exploit mutable arithmetics to exploit them while
2877 still being completely generic
2879 (license license:mpl2.0)))
2881 (define-public julia-nanmath
2883 (name "julia-nanmath")
2889 (url "https://github.com/mlubin/NaNMath.jl")
2890 (commit (string-append "v" version))))
2891 (file-name (git-file-name name version))
2893 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
2894 (build-system julia-build-system)
2895 (home-page "https://github.com/mlubin/NaNMath.jl")
2896 (synopsis "Implementations of basic math functions")
2897 (description "Implementations of basic math functions which return
2898 @code{NaN} instead of throwing a @code{DomainError}.")
2899 (license license:expat)))
2901 (define-public julia-nlsolversbase
2903 (name "julia-nlsolversbase")
2909 (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2910 (commit (string-append "v" version))))
2911 (file-name (git-file-name name version))
2913 (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98"))))
2914 (build-system julia-build-system)
2916 `(("julia-diffresults" ,julia-diffresults)
2917 ("julia-finitediff" ,julia-finitediff)
2918 ("julia-forwarddiff" ,julia-forwarddiff)))
2920 `(("julia-optimtestproblems" ,julia-optimtestproblems)
2921 ("julia-recursivearraytools" ,julia-recursivearraytools)))
2922 (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
2923 (synopsis "Optimization and equation solver software in JuliaNLSolvers")
2924 (description "This package aims at establishing common ground for Optim.jl,
2925 LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to
2926 hold objective related callables, information about the objectives, and an
2927 interface to interact with these types.")
2928 (license license:expat)))
2930 (define-public julia-nnlib
2932 (name "julia-nnlib")
2938 (url "https://github.com/FluxML/NNlib.jl")
2939 (commit (string-append "v" version))))
2940 (file-name (git-file-name name version))
2942 (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
2943 (build-system julia-build-system)
2946 (modify-phases %standard-phases
2947 (add-after 'unpack 'skip-cuda-tests
2949 (substitute* "test/runtests.jl"
2951 (("&& CUDA\\.functional\\(\\)") ""))
2952 (setenv "NNLIB_TEST_CUDA" "false"))))))
2954 `(("julia-adapt" ,julia-adapt)
2955 ("julia-chainrulescore" ,julia-chainrulescore)
2956 ("julia-requires" ,julia-requires)))
2958 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
2959 ("julia-stablerngs" ,julia-stablerngs)
2960 ("julia-zygote" ,julia-zygote)))
2961 (home-page "https://github.com/FluxML/NNlib.jl")
2962 (synopsis "Neural Network primitives with multiple backends")
2963 (description "This package will provide a library of functions useful for
2964 machine learning, such as softmax, sigmoid, convolutions and pooling. It
2965 doesn't provide any other \"high-level\" functionality like layers or AD.")
2966 (license license:expat)))
2968 (define-public julia-optimtestproblems
2970 (name "julia-optimtestproblems")
2976 (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2977 (commit (string-append "v" version))))
2978 (file-name (git-file-name name version))
2980 (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
2981 (build-system julia-build-system)
2983 `(#:julia-package-name "OptimTestProblems"))
2984 (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
2985 (synopsis "Collection of optimization test problems")
2986 (description "The purpose of this package is to provide test problems for
2987 JuliaNLSolvers packages.")
2988 (license license:expat)))
2990 (define-public julia-orderedcollections
2992 (name "julia-orderedcollections")
2998 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
2999 (commit (string-append "v" version))))
3000 (file-name (git-file-name name version))
3002 (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
3003 (build-system julia-build-system)
3004 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
3005 (synopsis "Associative containers that preserve insertion order")
3006 (description "This package implements @code{OrderedDicts} and
3007 @code{OrderedSets}, which are similar to containers in base Julia. However,
3008 during iteration the @code{Ordered*} containers return items in the order in
3009 which they were added to the collection.")
3010 (license license:expat)))
3012 (define-public julia-offsetarrays
3014 (name "julia-offsetarrays")
3020 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
3021 (commit (string-append "v" version))))
3022 (file-name (git-file-name name version))
3024 (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc"))))
3025 (build-system julia-build-system)
3027 `(("julia-adapt" ,julia-adapt)))
3028 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
3029 (arguments '(#:tests? #f))
3030 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
3031 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
3032 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
3033 have arbitrary indices, similar to those found in some other programming
3034 languages like Fortran.")
3035 (license license:expat)))
3037 (define-public julia-paddedviews
3039 (name "julia-paddedviews")
3045 (url "https://github.com/JuliaArrays/PaddedViews.jl")
3046 (commit (string-append "v" version))))
3047 (file-name (git-file-name name version))
3049 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h"))))
3050 (build-system julia-build-system)
3052 '(#:tests? #f)) ;require Documenter, not packaged yet
3054 `(("julia-offsetarrays" ,julia-offsetarrays)))
3055 (home-page "https://github.com/JuliaArrays/PaddedViews.jl")
3056 (synopsis "Add virtual padding to the edges of an array")
3057 (description "@code{PaddedViews} provides a simple wrapper type,
3058 @code{PaddedView}, to add \"virtual\" padding to any array without copying data.
3059 Edge values not specified by the array are assigned a @code{fillvalue}.
3060 Multiple arrays may be \"promoted\" to have common indices using the
3061 @code{paddedviews} function.")
3062 (license license:expat)))
3064 (define-public julia-parameters
3066 (name "julia-parameters")
3072 (url "https://github.com/mauro3/Parameters.jl")
3073 (commit (string-append "v" version))))
3074 (file-name (git-file-name name version))
3076 (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
3077 (build-system julia-build-system)
3079 `(("julia-orderedcollections" ,julia-orderedcollections)
3080 ("julia-unpack" ,julia-unpack)))
3081 (home-page "https://github.com/mauro3/Parameters.jl")
3082 (synopsis "Numerical-model parameter helpers")
3083 (description "This package contains types with default field values, keyword
3084 constructors and (un-)pack macros. Keyword functions can be slow in Julia,
3085 however, the normal positional constructor is also provided and could be used in
3086 performance critical code.")
3087 (license license:expat)))
3089 (define-public julia-parsers
3091 (name "julia-parsers")
3097 (url "https://github.com/JuliaData/Parsers.jl")
3098 (commit (string-append "v" version))))
3099 (file-name (git-file-name name version))
3101 (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
3102 (build-system julia-build-system)
3103 (home-page "https://github.com/JuliaData/Parsers.jl")
3104 (synopsis "Fast parsing machinery for basic types in Julia")
3105 (description "@code{Parsers.jl} is a collection of type parsers and
3106 utilities for Julia.")
3107 (license license:expat)))
3109 (define-public julia-pdmats
3111 (name "julia-pdmats")
3117 (url "https://github.com/JuliaStats/PDMats.jl")
3118 (commit (string-append "v" version))))
3119 (file-name (git-file-name name version))
3121 (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0"))))
3122 (build-system julia-build-system)
3123 (home-page "https://github.com/JuliaStats/PDMats.jl")
3125 "Uniform Interface for positive definite matrices of various structures")
3126 (description "PDMats.jl supports efficient computation on positive definite
3127 matrices of various structures. In particular, it provides uniform interfaces
3128 to use positive definite matrices of various structures for writing generic
3129 algorithms, while ensuring that the most efficient implementation is used in
3130 actual computation.")
3131 (license license:expat)))
3133 (define-public julia-plotthemes
3135 (name "julia-plotthemes")
3141 (url "https://github.com/JuliaPlots/PlotThemes.jl")
3142 (commit (string-append "v" version))))
3143 (file-name (git-file-name name version))
3145 (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh"))))
3146 (build-system julia-build-system)
3148 `(("julia-plotutils" ,julia-plotutils)
3149 ("julia-requires" ,julia-requires)))
3150 (home-page "https://github.com/JuliaPlots/PlotThemes.jl")
3151 (synopsis "Themes for the Julia plotting package Plots.jl")
3153 "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.")
3154 (license license:expat)))
3156 (define-public julia-plotutils
3158 (name "julia-plotutils")
3164 (url "https://github.com/JuliaPlots/PlotUtils.jl")
3165 (commit (string-append "v" version))))
3166 (file-name (git-file-name name version))
3168 (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105"))))
3169 (build-system julia-build-system)
3171 `(("julia-colors" ,julia-colors)
3172 ("julia-colorschemes" ,julia-colorschemes)
3173 ("julia-reexport" ,julia-reexport)))
3175 `(("julia-stablerngs" ,julia-stablerngs)))
3176 (home-page "https://github.com/JuliaPlots/PlotUtils.jl")
3177 (synopsis "Helper algorithms for building plotting components")
3178 (description "This package contains generic helper algorithms for building
3179 plotting components.")
3180 (license license:expat)))
3182 (define-public julia-pooledarrays
3184 (name "julia-pooledarrays")
3190 (url "https://github.com/JuliaData/PooledArrays.jl")
3191 (commit (string-append "v" version))))
3192 (file-name (git-file-name name version))
3194 (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr"))))
3195 (build-system julia-build-system)
3197 `(("julia-dataapi" ,julia-dataapi)))
3198 (home-page "https://github.com/JuliaData/PooledArrays.jl")
3199 (synopsis "Pooled representation of arrays in Julia")
3200 (description "This package provides a pooled representation of arrays for
3201 purposes of compression when there are few unique elements.")
3202 (license license:expat)))
3204 (define-public julia-positivefactorizations
3206 (name "julia-positivefactorizations")
3212 (url "https://github.com/timholy/PositiveFactorizations.jl")
3213 (commit (string-append "v" version))))
3214 (file-name (git-file-name name version))
3216 (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23"))))
3217 (build-system julia-build-system)
3219 `(("julia-forwarddiff" ,julia-forwarddiff)
3220 ("julia-reversediff" ,julia-reversediff)))
3221 (home-page "https://github.com/timholy/PositiveFactorizations.jl")
3222 (synopsis "Positive-definite \"approximations\" to matrices")
3223 (description "@code{PositiveFactorizations} is a package for computing a
3224 positive definite matrix decomposition (factorization) from an arbitrary
3225 symmetric input. The motivating application is optimization (Newton or
3226 quasi-Newton methods), in which the canonical search direction -H/g (H being the
3227 Hessian and g the gradient) may not be a descent direction if H is not positive
3229 (license license:expat)))
3231 (define-public julia-preferences
3233 (name "julia-preferences")
3239 (url "https://github.com/JuliaPackaging/Preferences.jl")
3240 (commit (string-append "v" version))))
3241 (file-name (git-file-name name version))
3243 (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
3244 (build-system julia-build-system)
3246 `(#:tests? #f)) ; Tests try to mkdir /.julia
3247 (home-page "https://github.com/JuliaPackaging/Preferences.jl")
3248 (synopsis "Store configuration switches to TOML files")
3249 (description "The @code{Preferences} package provides an integrated way for
3250 packages to store configuration switches to persistent TOML files, and use those
3251 pieces of information at both run time and compile time in Julia. This enables
3252 the user to modify the behavior of a package, and have that choice reflected in
3253 everything from run time algorithm choice to code generation at compile time.")
3254 (license license:expat)))
3256 (define-public julia-prettytables
3258 (name "julia-prettytables")
3264 (url "https://github.com/ronisbr/PrettyTables.jl")
3265 (commit (string-append "v" version))))
3266 (file-name (git-file-name name version))
3268 (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
3269 (build-system julia-build-system)
3272 (modify-phases %standard-phases
3273 (add-after 'unpack 'skip-color-tests
3275 (substitute* "test/text_backend.jl"
3276 ((".*colors\\.jl.*") ""))
3279 `(("julia-crayons" ,julia-crayons)
3280 ("julia-formatting" ,julia-formatting)
3281 ("julia-reexport" ,julia-reexport)
3282 ("julia-tables" ,julia-tables)))
3283 (home-page "https://github.com/ronisbr/PrettyTables.jl")
3284 (synopsis "Print data in formatted tables")
3285 (description "This package has the purpose to print data in matrices in a
3286 human-readable format.")
3287 (license license:expat)))
3289 (define-public julia-pycall
3291 (name "julia-pycall")
3297 (url "https://github.com/JuliaPy/PyCall.jl")
3298 (commit (string-append "v" version))))
3299 (file-name (git-file-name name version))
3302 "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq"))))
3303 (build-system julia-build-system)
3305 `(#:imported-modules ((guix build python-build-system)
3306 ,@%julia-build-system-modules)
3307 #:modules ((guix build julia-build-system)
3309 ((guix build python-build-system) #:prefix python:))
3311 (modify-phases %standard-phases
3312 (add-after 'unpack 'remove-conda
3314 (substitute* "Project.toml"
3316 (substitute* (list "src/PyCall.jl"
3318 (("import Conda") ""))
3319 (substitute* "deps/depsutils.jl"
3320 (("Conda.PYTHONDIR") "\"/\""))
3322 (add-after 'unpack 'set-python
3323 (lambda* (#:key inputs outputs #:allow-other-keys)
3324 (let ((python (assoc-ref inputs "python")))
3325 (setenv "PYCALL_JL_RUNTIME_PYTHON"
3326 (string-append python "/bin/python3"))
3327 (with-output-to-file "deps/deps.jl"
3330 "const python = \"~a/bin/python3\"~@
3331 const pyprogramname = \"~a/bin/python3\"~@
3332 const libpython = \"~a/lib/libpython~a.so.1.0\"~@
3333 const PYTHONHOME = \"~a\"~@
3334 const pyversion_build = v\"~a\"~@
3335 const conda = false~%"
3339 (python:python-version python)
3341 ,(package-version python))))
3343 (add-before 'check 'pre-check
3345 (setenv "CI" "true")
3346 (setenv "JULIA_PKGEVAL" "true")
3349 `(("julia-macrotools" ,julia-macrotools)
3350 ("julia-versionparsing" ,julia-versionparsing)))
3352 `(("python" ,python)))
3354 `(("python-numpy" ,python-numpy)))
3355 (home-page "https://github.com/JuliaPy/PyCall.jl")
3356 (synopsis "Call Python functions from the Julia language")
3357 (description "This package provides the ability to directly call and fully
3358 interoperate with Python from the Julia language. You can import arbitrary
3359 Python modules from Julia, call Python functions (with automatic conversion of
3360 types between Julia and Python), define Python classes from Julia methods, and
3361 share large data structures between Julia and Python without copying them.")
3362 (license license:expat)))
3364 (define-public julia-pyplot
3366 (name "julia-pyplot")
3372 (url "https://github.com/JuliaPy/PyPlot.jl")
3373 (commit (string-append "v" version))))
3374 (file-name (git-file-name name version))
3376 (base32 "007zs0imfgs69f30pp2a3rc93kl0qiq7qjx6ig35z4wzkmps4skd"))))
3377 (build-system julia-build-system)
3379 `(("julia-colors" ,julia-colors)
3380 ("julia-latexstrings" ,julia-latexstrings)
3381 ("julia-pycall" ,julia-pycall)
3382 ("julia-versionparsing" ,julia-versionparsing)
3383 ;; python-matplotlib is expected to be available at runtime.
3384 ("python-matplotlib" ,python-matplotlib)))
3385 (home-page "https://github.com/JuliaPy/PyPlot.jl")
3386 (synopsis "Plotting for Julia based on matplotlib.pyplot")
3387 (description "This package provides a Julia interface to the Matplotlib
3388 plotting library from Python, and specifically to the @code{matplotlib.pyplot}
3389 module. PyPlot uses the Julia PyCall package to call Matplotlib directly from
3390 Julia with little or no overhead (arrays are passed without making a copy).")
3391 (license license:expat)))
3393 (define-public julia-quadgk
3395 (name "julia-quadgk")
3401 (url "https://github.com/JuliaMath/QuadGK.jl")
3402 (commit (string-append "v" version))))
3403 (file-name (git-file-name name version))
3405 (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
3406 (build-system julia-build-system)
3408 `(("julia-datastructures" ,julia-datastructures)))
3409 (home-page "https://github.com/JuliaMath/QuadGK.jl")
3410 (synopsis "Adaptive 1d numerical Gauss–Kronrod integration")
3411 (description "This package provides support for one-dimensional numerical
3412 integration in Julia using adaptive Gauss-Kronrod quadrature. The code was
3413 originally part of Base Julia. It supports integration of arbitrary numeric
3414 types, including arbitrary precision (@code{BigFloat}), and even integration of
3415 arbitrary normed vector spaces (e.g. matrix-valued integrands).")
3416 (license license:expat)))
3418 (define-public julia-quadmath
3420 (name "julia-quadmath")
3426 (url "https://github.com/JuliaMath/Quadmath.jl")
3427 (commit (string-append "v" version))))
3428 (file-name (git-file-name name version))
3430 (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
3431 (build-system julia-build-system)
3434 (modify-phases %standard-phases
3435 (add-after 'unpack 'hardcode-libmath-location
3436 (lambda* (#:key inputs #:allow-other-keys)
3437 (let ((gcclib (assoc-ref inputs "gcc:lib")))
3438 (substitute* "src/Quadmath.jl"
3439 (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
3440 (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
3443 `(("julia-requires" ,julia-requires)))
3445 `(("gcc:lib" ,gcc "lib")))
3447 `(("julia-specialfunctions" ,julia-specialfunctions)))
3448 (home-page "https://github.com/JuliaMath/Quadmath.jl")
3449 (synopsis "Float128 and libquadmath for the Julia language")
3450 (description "This is a Julia interface to @code{libquadmath}, providing a
3451 @code{Float128} type corresponding to the IEEE754 binary128 floating point
3453 (license license:expat)))
3455 (define-public julia-quaternions
3457 (name "julia-quaternions")
3463 (url "https://github.com/JuliaGeometry/Quaternions.jl")
3464 (commit (string-append "v" version))))
3465 (file-name (git-file-name name version))
3467 (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s"))))
3468 (build-system julia-build-system)
3470 `(("julia-dualnumbers" ,julia-dualnumbers)))
3471 (home-page "https://github.com/JuliaGeometry/Quaternions.jl")
3472 (synopsis "Quaternion and dual-quaternion functionality")
3473 (description "Quaternions are best known for their suitability as
3474 representations of 3D rotational orientation. They can also be viewed as an
3475 extension of complex numbers.")
3476 (license license:expat)))
3478 (define-public julia-queryoperators
3480 (name "julia-queryoperators")
3486 (url "https://github.com/queryverse/QueryOperators.jl")
3487 (commit (string-append "v" version))))
3488 (file-name (git-file-name name version))
3490 (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22"))))
3491 (build-system julia-build-system)
3493 `(("julia-datastructures" ,julia-datastructures)
3494 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3495 ("julia-tableshowutils" ,julia-tableshowutils)))
3496 (home-page "https://github.com/queryverse/QueryOperators.jl")
3497 (synopsis "Query operators for Julia")
3498 (description "This package contains the underlying query operators that are
3499 exposed to users in @code{Query.jl}.")
3500 (license license:expat)))
3502 (define-public julia-rangearrays
3504 (name "julia-rangearrays")
3510 (url "https://github.com/JuliaArrays/RangeArrays.jl")
3511 (commit (string-append "v" version))))
3512 (file-name (git-file-name name version))
3514 (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg"))))
3515 (build-system julia-build-system)
3516 (home-page "https://github.com/JuliaArrays/RangeArrays.jl")
3517 (synopsis "Array data structures with autogenerated columns")
3518 (description "The goal of RangeArrays is to provide efficient and convenient
3519 array data structures where the columns of the arrays are generated (on the fly)
3521 (license license:expat)))
3523 (define-public julia-ratios
3525 (name "julia-ratios")
3531 (url "https://github.com/timholy/Ratios.jl")
3532 (commit (string-append "v" version))))
3533 (file-name (git-file-name name version))
3535 (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh"))))
3536 (build-system julia-build-system)
3537 (home-page "https://github.com/timholy/Ratios.jl")
3538 (synopsis "Faster Rational-like types for Julia")
3539 (description "This package provides types similar to Julia's @code{Rational}
3540 type, which make some sacrifices but have better computational performance.")
3541 (license license:expat)))
3543 (define-public julia-recipesbase
3545 (name "julia-recipesbase")
3551 (url "https://github.com/JuliaPlots/RecipesBase.jl")
3552 (commit (string-append "v" version))))
3553 (file-name (git-file-name name version))
3555 (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
3556 (build-system julia-build-system)
3557 (home-page "https://github.com/JuliaPlots/RecipesBase.jl")
3558 (synopsis "Define transformation recipes on user types")
3559 (description "This package implements handy macros @code{@@recipe} and
3560 @code{@@series} which will define a custom transformation and attach attributes
3561 for user types. Its design is an attempt to simplify and generalize the summary
3562 and display of types and data from external packages. With this package it is
3563 possible to describe visualization routines that can be used as components in
3564 more complex visualizations.")
3565 (license license:expat)))
3567 (define-public julia-recipespipeline
3569 (name "julia-recipespipeline")
3575 (url "https://github.com/JuliaPlots/RecipesPipeline.jl")
3576 (commit (string-append "v" version))))
3577 (file-name (git-file-name name version))
3579 (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7"))))
3580 (build-system julia-build-system)
3582 `(#:tests? #f)) ; Cycle with Plots.jl.
3584 `(("julia-nanmath" ,julia-nanmath)
3585 ("julia-plotutils" ,julia-plotutils)
3586 ("julia-recipesbase" ,julia-recipesbase)))
3587 (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/")
3588 (synopsis "Utilities for processing recipes")
3589 (description "This package was factored out of @code{Plots.jl} to allow any
3590 other plotting package to use the recipe pipeline. In short, the extremely
3591 lightweight @code{RecipesBase.jl} package can be depended on by any package to
3592 define \"recipes\": plot specifications of user-defined types, as well as custom
3593 plot types. @code{RecipePipeline.jl} contains the machinery to translate these
3594 recipes to full specifications for a plot.")
3595 (license license:expat)))
3597 (define-public julia-recursivearraytools
3599 (name "julia-recursivearraytools")
3605 (url "https://github.com/SciML/RecursiveArrayTools.jl")
3606 (commit (string-append "v" version))))
3607 (file-name (git-file-name name version))
3609 (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
3610 (build-system julia-build-system)
3612 `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
3614 `(("julia-arrayinterface" ,julia-arrayinterface)
3615 ("julia-chainrulescore" ,julia-chainrulescore)
3616 ("julia-docstringextensions" ,julia-docstringextensions)
3617 ("julia-recipesbase" ,julia-recipesbase)
3618 ("julia-requires" ,julia-requires)
3619 ("julia-staticarrays" ,julia-staticarrays)
3620 ("julia-zygoterules" ,julia-zygoterules)))
3622 ; `(("julia-forwarddiff" ,julia-forwarddiff)
3623 ; ("julia-nlsolve" ,julia-nlsolve)
3624 ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq)
3625 ; ("julia-structarrays" ,julia-structarrays)
3626 ; ("julia-zygote" ,julia-zygote)))
3627 (home-page "https://github.com/SciML/RecursiveArrayTools.jl")
3628 (synopsis "Tools for handling objects like arrays of arrays and deeper nestings")
3629 (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with
3630 recursive arrays like arrays of arrays.")
3631 (license license:expat)))
3633 (define-public julia-reexport
3635 (name "julia-reexport")
3641 (url "https://github.com/simonster/Reexport.jl")
3642 (commit (string-append "v" version))))
3643 (file-name (git-file-name name version))
3645 (base32 "0inf5q6f01ncd5c5wm8mwzv2hs627ng6xlh8dhrlflp321hbamwf"))))
3646 (build-system julia-build-system)
3647 (home-page "https://github.com/simonster/Reexport.jl")
3648 (synopsis "Re-export modules and symbols")
3649 (description "This package provides tools to re-export modules and symbols.")
3650 (license license:expat)))
3652 (define-public julia-referencetests
3654 (name "julia-referencetests")
3660 (url "https://github.com/JuliaTesting/ReferenceTests.jl")
3661 (commit (string-append "v" version))))
3662 (file-name (git-file-name name version))
3664 (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
3665 (build-system julia-build-system)
3667 `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
3669 `(("julia-deepdiffs" ,julia-deepdiffs)
3670 ("julia-distances" ,julia-distances)
3671 ("julia-fileio" ,julia-fileio)
3672 ("julia-imagecore" ,julia-imagecore)
3673 ("julia-imageinterminal" ,julia-imageinterminal)))
3675 ; `(("julia-csvfiles" ,julia-csvfiles)
3676 ; ("julia-dataframes" ,julia-dataframes)
3677 ; ("julia-gr" ,julia-gr)
3678 ; ("julia-imagemagick" ,julia-imagemagick)
3679 ; ("julia-imagetransformations" ,julia-imagetransformations)
3680 ; ("julia-plots" ,julia-plots)
3681 ; ("julia-testimages" ,julia-testimages)))
3682 (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/")
3683 (synopsis "Utility package for comparing data against reference files")
3684 (description "@code{ReferenceTests.jl} is a Julia package that adds a couple
3685 of additional macros to your testing toolbox. In particular, it focuses on
3686 functionality for testing values against reference files, which in turn the
3687 package can help create and update if need be.")
3688 (license license:expat)))
3690 (define-public julia-requires
3692 (name "julia-requires")
3698 (url "https://github.com/JuliaPackaging/Requires.jl/")
3699 (commit (string-append "v" version))))
3700 (file-name (git-file-name name version))
3702 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
3703 (build-system julia-build-system)
3704 (inputs ;required for test
3705 `(("julia-example" ,julia-example)))
3707 `(("julia-colors" ,julia-colors)))
3708 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
3709 (synopsis "Faster package loader")
3710 (description "This package make loading packages faster, maybe. It
3711 supports specifying glue code in packages which will load automatically when
3712 another package is loaded, so that explicit dependencies (and long load times)
3714 (license license:expat)))
3716 (define-public julia-reversediff
3718 (name "julia-reversediff")
3724 (url "https://github.com/JuliaDiff/ReverseDiff.jl")
3725 (commit (string-append "v" version))))
3726 (file-name (git-file-name name version))
3728 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl"))))
3729 (build-system julia-build-system)
3731 `(("julia-diffresults" ,julia-diffresults)
3732 ("julia-diffrules" ,julia-diffrules)
3733 ("julia-forwarddiff" ,julia-forwarddiff)
3734 ("julia-functionwrappers" ,julia-functionwrappers)
3735 ("julia-macrotools" ,julia-macrotools)
3736 ("julia-nanmath" ,julia-nanmath)
3737 ("julia-specialfunctions" ,julia-specialfunctions)
3738 ("julia-staticarrays" ,julia-staticarrays)))
3740 `(("julia-difftests" ,julia-difftests)
3741 ("julia-fillarrays" ,julia-fillarrays)))
3742 (home-page "https://github.com/JuliaDiff/ReverseDiff.jl")
3743 (synopsis "Reverse Mode Automatic Differentiation for Julia")
3744 (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based
3745 reverse mode @acronym{AD, automatic differentiation}, that implements methods to
3746 take gradients, Jacobians, Hessians, and higher-order derivatives of native
3747 Julia functions (or any callable object, really).")
3748 (license license:expat)))
3750 (define-public julia-richardson
3752 (name "julia-richardson")
3758 (url "https://github.com/JuliaMath/Richardson.jl")
3759 (commit (string-append "v" version))))
3760 (file-name (git-file-name name version))
3762 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
3763 (build-system julia-build-system)
3764 (home-page "https://juliapackages.com/p/richardson")
3765 (synopsis "Extrapolate function using Richardson method")
3766 (description "This package provides a function extrapolate that
3767 extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
3768 only at a geometric sequence of points @code{> x0} (or optionally @code{<
3769 x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
3770 tableau, which adaptively increases the degree of an extrapolation polynomial
3771 until convergence is achieved to a desired tolerance (or convergence stalls
3772 due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
3773 high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
3774 other power series in @code{h}.")
3775 (license license:expat)))
3777 (define-public julia-rotations
3778 ;; This is the first commit with support for julia-1.6.
3779 (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788")
3782 (name "julia-rotations")
3783 (version (git-version "1.0.2" revision commit))
3788 (url "https://github.com/JuliaGeometry/Rotations.jl")
3790 (file-name (git-file-name name version))
3792 (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19"))))
3793 (build-system julia-build-system)
3795 `(("julia-staticarrays" ,julia-staticarrays)))
3797 `(("julia-benchmarktools" ,julia-benchmarktools)
3798 ("julia-forwarddiff" ,julia-forwarddiff)
3799 ("julia-unitful" ,julia-unitful)))
3800 (home-page "https://github.com/JuliaGeometry/Rotations.jl")
3801 (synopsis "Julia implementations for different rotation parameterisations")
3802 (description "This package implements various 3D rotation parameterizations
3803 and defines conversions between them. At their heart, each rotation
3804 parameterization is a 3×3 unitary (orthogonal) matrix (based on the
3805 @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin
3806 through matrix-vector multiplication.")
3807 (license license:expat))))
3809 (define-public julia-safetestsets
3810 ;; The only release tag is the first commit in the repository.
3811 (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
3814 (name "julia-safetestsets")
3815 (version (git-version "0.0.1" revision commit))
3820 (url "https://github.com/YingboMa/SafeTestsets.jl")
3822 (file-name (git-file-name name version))
3824 (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
3825 (build-system julia-build-system)
3827 `(#:julia-package-name "SafeTestsets"))
3829 `(("julia-staticarrays" ,julia-staticarrays)))
3830 (home-page "https://github.com/YingboMa/SafeTestsets.jl")
3831 (synopsis "Julia's testset in a module")
3832 (description "This package contains the testset from Julia, packaged into
3833 a loadable module.")
3834 (license license:expat))))
3836 (define-public julia-sass
3844 (url "https://github.com/piever/Sass.jl")
3845 (commit (string-append "v" version))))
3846 (file-name (git-file-name name version))
3848 (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
3849 (build-system julia-build-system)
3851 `(("julia-libsass-jll" ,julia-libsass-jll)))
3852 (home-page "https://github.com/piever/Sass.jl")
3853 (synopsis "Compile scss and sass file to css")
3854 (description "This package provides a simple Julian API to use the
3855 @code{libsass} library to compile scss and sass files to css.")
3856 (license license:expat)))
3858 (define-public julia-scratch
3860 (name "julia-scratch")
3866 (url "https://github.com/JuliaPackaging/Scratch.jl")
3867 (commit (string-append "v" version))))
3868 (file-name (git-file-name name version))
3871 "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
3872 (build-system julia-build-system)
3874 `(#:tests? #f)) ; Test suite tries to access the Julia package registry.
3875 (home-page "https://github.com/JuliaPackaging/Scratch.jl")
3876 (synopsis "Scratch spaces for all your persistent mutable data needs")
3877 (description "This repository implements the scratch spaces API for
3878 package-specific mutable containers of data. These spaces can contain datasets,
3879 text, binaries, or any other kind of data that would be convenient to store in
3880 a location specific to your package. As compared to Artifacts, these containers
3881 of data are mutable. Because the scratch space location on disk is not very
3882 user-friendly, scratch spaces should, in general, not be used for a storing
3883 files that the user must interact with through a file browser.")
3884 (license license:expat)))
3886 (define-public julia-showoff
3888 (name "julia-showoff")
3894 (url "https://github.com/JuliaGraphics/Showoff.jl")
3895 (commit (string-append "v" version))))
3896 (file-name (git-file-name name version))
3898 (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53"))))
3899 (build-system julia-build-system)
3900 (home-page "https://github.com/JuliaGraphics/Showoff.jl")
3901 (synopsis "Nicely format an array of n things for tables and plots")
3902 (description "@code{Showoff} provides an interface for consistently
3903 formatting an array of n things, e.g. numbers, dates, unitful values. It's used
3904 in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.")
3905 (license license:expat)))
3907 (define-public julia-simpletraits
3909 (name "julia-simpletraits")
3915 (url "https://github.com/mauro3/SimpleTraits.jl")
3916 (commit (string-append "v" version))))
3917 (file-name (git-file-name name version))
3919 (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05"))))
3920 (build-system julia-build-system)
3922 `(("julia-macrotools" ,julia-macrotools)))
3923 (home-page "https://github.com/mauro3/SimpleTraits.jl")
3924 (synopsis "Simple Traits for Julia")
3925 (description "This package provides a macro-based implementation of traits.
3926 The main idea behind traits is to group types outside the type-hierarchy and to
3927 make dispatch work with that grouping. The difference to Union-types is that
3928 types can be added to a trait after the creation of the trait, whereas Union
3929 types are fixed after creation.")
3930 (license license:expat)))
3932 (define-public julia-sortingalgorithms
3934 (name "julia-sortingalgorithms")
3940 (url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3941 (commit (string-append "v" version))))
3942 (file-name (git-file-name name version))
3944 (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb"))))
3945 (build-system julia-build-system)
3947 `(#:tests? #f)) ; cycle with StatsBase.jl
3949 `(("julia-datastructures" ,julia-datastructures)))
3951 ; `(("julia-statsbase" ,julia-statsbase)))
3952 (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
3953 (synopsis "Extra sorting algorithms extending Julia's sorting API")
3954 (description "The SortingAlgorithms package provides three sorting
3955 algorithms that can be used with Julia's standard sorting API: heapsort,
3956 timsort and radixsort.")
3957 (license license:expat)))
3959 (define-public julia-specialfunctions
3961 (name "julia-specialfunctions")
3967 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
3968 (commit (string-append "v" version))))
3969 (file-name (git-file-name name version))
3971 (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0"))))
3972 (build-system julia-build-system)
3974 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
3976 `(("julia-chainrulescore" ,julia-chainrulescore)
3977 ("julia-logexpfunctions" ,julia-logexpfunctions)
3978 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
3979 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
3980 (synopsis "Special mathematical functions")
3981 (description "This package provides special mathematical functions,
3982 including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
3983 cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
3984 polygamma functions.")
3985 (license license:expat)))
3987 (define-public julia-splitapplycombine
3989 (name "julia-splitapplycombine")
3995 (url "https://github.com/JuliaData/SplitApplyCombine.jl")
3996 (commit (string-append "v" version))))
3997 (file-name (git-file-name name version))
3999 (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x"))))
4000 (build-system julia-build-system)
4002 `(("julia-dictionaries" ,julia-dictionaries)
4003 ("julia-indexing" ,julia-indexing)))
4004 (home-page "https://github.com/JuliaData/SplitApplyCombine.jl")
4005 (synopsis "Split-apply-combine strategies for Julia")
4006 (description "@code{SplitApplyCombine.jl} provides high-level, generic tools
4007 for manipulating data - particularly focussing on data in nested containers. An
4008 emphasis is placed on ensuring split-apply-combine strategies are easy to apply,
4009 and work reliably for arbitrary iterables and in an optimized way with the data
4010 structures included in Julia's standard library.")
4011 (license license:expat)))
4013 (define-public julia-stablerngs
4015 (name "julia-stablerngs")
4021 (url "https://github.com/JuliaRandom/StableRNGs.jl")
4022 (commit (string-append "v" version))))
4023 (file-name (git-file-name name version))
4025 (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
4026 (build-system julia-build-system)
4027 (home-page "https://github.com/JuliaRandom/StableRNGs.jl")
4028 (synopsis "Julia RNG with stable streams")
4029 (description "This package intends to provide a simple RNG with stable
4030 streams, suitable for tests in packages which need reproducible streams of
4031 random numbers across Julia versions. Indeed, the Julia RNGs provided by
4032 default are documented to have non-stable streams (which for example enables
4033 some performance improvements).")
4034 (license license:expat)))
4036 (define-public julia-stackviews
4038 (name "julia-stackviews")
4044 (url "https://github.com/JuliaArrays/StackViews.jl")
4045 (commit (string-append "v" version))))
4046 (file-name (git-file-name name version))
4048 (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
4049 (build-system julia-build-system)
4051 `(#:tests? #f ; Documenter.jl not packaged yet
4053 (modify-phases %standard-phases
4054 (add-after 'unpack 'skip-doctest
4056 (substitute* "test/runtests.jl"
4057 ((".*doctest.*") ""))
4060 `(("julia-offsetarrays" ,julia-offsetarrays)))
4062 ; `(("julia-aqua" ,julia-aqua)
4063 ; ("julia-documenter" ,julia-documenter)))
4064 (home-page "https://github.com/JuliaArrays/StackViews.jl")
4065 (synopsis "No more catcat")
4066 (description "StackViews provides only one array type: @code{StackView}.
4067 There are multiple ways to understand @code{StackView}:
4069 @item inverse of @code{eachslice}
4070 @item @code{cat} variant
4072 @item lazy version of @code{repeat} special case
4074 (license license:expat)))
4076 (define-public julia-static
4078 (name "julia-static")
4084 (url "https://github.com/SciML/Static.jl")
4085 (commit (string-append "v" version))))
4086 (file-name (git-file-name name version))
4088 (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2"))))
4089 (build-system julia-build-system)
4091 `(("julia-ifelse" ,julia-ifelse)))
4093 `(("julia-aqua" ,julia-aqua)))
4094 (home-page "https://github.com/SciML/Static.jl")
4095 (synopsis "Static types useful for dispatch and generated functions")
4096 (description "Static.jl defines a limited set of statically parameterized
4097 types and a common interface that is shared between them.")
4098 (license license:expat)))
4100 (define-public julia-staticarrays
4102 (name "julia-staticarrays")
4108 (url "https://github.com/JuliaArrays/StaticArrays.jl")
4109 (commit (string-append "v" version))))
4110 (file-name (git-file-name name version))
4112 (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79"))))
4113 (build-system julia-build-system)
4115 `(("julia-benchmarktools" ,julia-benchmarktools)))
4116 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
4117 (synopsis "Statically sized arrays")
4118 (description "This package provides a framework for implementing
4119 statically sized arrays in Julia, using the abstract type
4120 @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
4121 @code{StaticArray} will provide fast implementations of common array and
4122 linear algebra operations.")
4123 (license license:expat)))
4125 (define-public julia-statsapi
4127 (name "julia-statsapi")
4133 (url "https://github.com/JuliaStats/StatsAPI.jl")
4134 (commit (string-append "v" version))))
4135 (file-name (git-file-name name version))
4137 (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv"))))
4138 (build-system julia-build-system)
4139 (home-page "https://juliastats.org/")
4140 (synopsis "Statistics-focused namespace for packages to share functions")
4141 (description "This package provides a namespace for data-related generic
4142 function definitions to solve the optional dependency problem; packages wishing
4143 to share and/or extend functions can avoid depending directly on each other by
4144 moving the function definition to @code{StatsAPI.jl} and each package taking a
4146 (license license:expat)))
4148 (define-public julia-statsbase
4150 (name "julia-statsbase")
4156 (url "https://github.com/JuliaStats/StatsBase.jl")
4157 (commit (string-append "v" version))))
4158 (file-name (git-file-name name version))
4160 (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi"))))
4161 (build-system julia-build-system)
4163 `(("julia-dataapi" ,julia-dataapi)
4164 ("julia-datastructures" ,julia-datastructures)
4165 ("julia-missings" ,julia-missings)
4166 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
4167 ("julia-statsapi" ,julia-statsapi)))
4169 `(("julia-stablerngs" ,julia-stablerngs)))
4170 (home-page "https://github.com/JuliaStats/StatsBase.jl")
4171 (synopsis "Basic statistics for Julia")
4172 (description "StatsBase.jl is a Julia package that provides basic support
4173 for statistics. Particularly, it implements a variety of statistics-related
4174 functions, such as scalar statistics, high-order moment computation, counting,
4175 ranking, covariances, sampling, and empirical density estimation.")
4176 (license license:expat)))
4178 (define-public julia-stringdistances
4180 (name "julia-stringdistances")
4186 (url "https://github.com/matthieugomez/StringDistances.jl")
4187 (commit (string-append "v" version))))
4188 (file-name (git-file-name name version))
4190 (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7"))))
4191 (build-system julia-build-system)
4193 `(("julia-distances" ,julia-distances)))
4194 (home-page "https://github.com/matthieugomez/StringDistances.jl")
4195 (synopsis "String Distances in Julia")
4196 (description "This package provides string distances in Julia. Distances
4197 are defined for @code{AbstractStrings}, and any iterator that define
4198 @code{length()}. The package also defines Distance \"modifiers\" that can be
4199 applied to any distance.")
4200 (license license:expat)))
4202 (define-public julia-structtypes
4204 (name "julia-structtypes")
4210 (url "https://github.com/JuliaData/StructTypes.jl")
4211 (commit (string-append "v" version))))
4212 (file-name (git-file-name name version))
4214 (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
4215 (build-system julia-build-system)
4216 (home-page "https://juliadata.github.io/StructTypes.jl/stable/")
4217 (synopsis "Abstract definitions and convenience methods for Julia objects")
4218 (description "This package provides the @code{StructTypes.StructType} trait
4219 for Julia types to declare the kind of \"struct\" they are, providing
4220 serialization/deserialization packages patterns and strategies to automatically
4221 construct objects.")
4222 (license license:expat)))
4224 (define-public julia-suppressor
4226 (name "julia-suppressor")
4232 (url "https://github.com/JuliaIO/Suppressor.jl")
4233 (commit (string-append "v" version))))
4234 (file-name (git-file-name name version))
4236 (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
4237 (build-system julia-build-system)
4238 (home-page "https://github.com/JuliaIO/Suppressor.jl")
4239 (synopsis "Capture stdout and sterr")
4240 (description "Julia macros for suppressing and/or capturing output (stdout),
4241 warnings (stderr) or both streams at the same time.")
4242 (license license:expat)))
4244 (define-public julia-tableiointerface
4246 (name "julia-tableiointerface")
4252 (url "https://github.com/lungben/TableIOInterface.jl")
4253 (commit (string-append "v" version))))
4254 (file-name (git-file-name name version))
4256 (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"))))
4257 (build-system julia-build-system)
4258 (home-page "https://github.com/lungben/TableIOInterface.jl")
4259 (synopsis "File formats based on file extensions")
4260 (description "This package determines tabular file formats based on file
4261 extensions. It is intended to be the base both for @code{TableIO.jl} and for
4262 the @code{Pluto.jl} tabular data import functionality.")
4263 (license license:expat)))
4265 (define-public julia-tables
4267 (name "julia-tables")
4273 (url "https://github.com/JuliaData/Tables.jl")
4274 (commit (string-append "v" version))))
4275 (file-name (git-file-name name version))
4277 (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb"))))
4278 (build-system julia-build-system)
4280 `(("julia-dataapi" ,julia-dataapi)
4281 ("julia-datavalueinterfaces" ,julia-datavalueinterfaces)
4282 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
4283 ("julia-tabletraits" ,julia-tabletraits)))
4285 `(("julia-datavalues" ,julia-datavalues)
4286 ("julia-queryoperators" ,julia-queryoperators)))
4287 (home-page "https://github.com/JuliaData/Tables.jl")
4288 (synopsis "Interface for tables in Julia")
4289 (description "The @code{Tables.jl} package provides simple, yet powerful
4290 interface functions for working with all kinds tabular data.")
4291 (license license:expat)))
4293 (define-public julia-tableshowutils
4294 ;; The 0.2.5 release is not fully compatable with newer versions of Julia.
4295 (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460")
4298 (name "julia-tableshowutils")
4304 (url "https://github.com/queryverse/TableShowUtils.jl")
4306 (file-name (git-file-name name version))
4308 (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5"))))
4309 (build-system julia-build-system)
4311 `(("julia-datavalues" ,julia-datavalues)
4312 ("julia-json" ,julia-json)))
4313 (home-page "https://github.com/queryverse/TableShowUtils.jl")
4314 (synopsis "Implement show for TableTraits.jl types")
4315 (description "This package provides some common helper functions that make
4316 it easier to implement various @code{Base.show} functions for types that
4317 participate in the @code{TableTraits.jl} ecosystem.")
4318 (license license:expat))))
4320 (define-public julia-tabletraits
4322 (name "julia-tabletraits")
4328 (url "https://github.com/queryverse/TableTraits.jl")
4329 (commit (string-append "v" version))))
4330 (file-name (git-file-name name version))
4332 (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"))))
4333 (build-system julia-build-system)
4335 `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)))
4336 (home-page "https://github.com/queryverse/TableTraits.jl")
4337 (synopsis "Traits for Julia tables")
4338 (description "TableTraits defines a generic interface for tabular data.")
4339 (license license:expat)))
4341 (define-public julia-tensorcore
4343 (name "julia-tensorcore")
4349 (url "https://github.com/JuliaMath/TensorCore.jl")
4350 (commit (string-append "v" version))))
4351 (file-name (git-file-name name version))
4353 (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy"))))
4354 (build-system julia-build-system)
4355 (home-page "https://github.com/JuliaMath/TensorCore.jl")
4356 (synopsis "Tensor-algebra definitions")
4357 (description "This package is intended as a lightweight foundation for
4358 tensor operations across the Julia ecosystem. Currently it exports three
4359 operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor,
4360 product preserves all dimensions}, and @acronym{boxdot, contracts neighboring
4362 (license license:expat)))
4364 (define-public julia-testimages
4366 (name "julia-testimages")
4372 (url "https://github.com/JuliaImages/TestImages.jl")
4373 (commit (string-append "v" version))))
4374 (file-name (git-file-name name version))
4376 (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
4377 (build-system julia-build-system)
4379 `(#:tests? #f)) ; cycle with ImageMagick.jl
4381 `(("julia-axisarrays" ,julia-axisarrays)
4382 ("julia-colortypes" ,julia-colortypes)
4383 ("julia-fileio" ,julia-fileio)
4384 ("julia-offsetarrays" ,julia-offsetarrays)
4385 ("julia-stringdistances" ,julia-stringdistances)))
4387 ; `(("julia-colors" ,julia-colors)
4388 ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
4389 ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment)
4390 ; ("julia-imagemagick" ,julia-imagemagick)
4391 ; ("julia-ometiff" ,julia-ometiff)
4392 ; ("julia-referencetests" ,julia-referencetests)))
4393 (home-page "https://testimages.juliaimages.org/")
4394 (synopsis "Standard test images for Julia")
4395 (description "This package provides a convenient Julia interface for loading
4396 standard named test images and example images for the internal usage in
4397 @code{JuliaImages}. This can be used in conjunction with the @code{Images}
4399 (license license:expat)))
4401 (define-public julia-tracker
4403 (name "julia-tracker")
4409 (url "https://github.com/FluxML/Tracker.jl")
4410 (commit (string-append "v" version))))
4411 (file-name (git-file-name name version))
4413 (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j"))
4414 (patches (search-patches "julia-tracker-16-compat.patch"))))
4415 (build-system julia-build-system)
4417 `(("julia-adapt" ,julia-adapt)
4418 ("julia-diffrules" ,julia-diffrules)
4419 ("julia-forwarddiff" ,julia-forwarddiff)
4420 ("julia-macrotools" ,julia-macrotools)
4421 ("julia-nanmath" ,julia-nanmath)
4422 ("julia-nnlib" ,julia-nnlib)
4423 ("julia-requires" ,julia-requires)
4424 ("julia-specialfunctions" ,julia-specialfunctions)))
4426 `(("julia-pdmats" ,julia-pdmats)))
4427 (home-page "https://github.com/FluxML/Tracker.jl")
4428 (synopsis "Operator overloading reverse-mode automatic differentiator")
4429 (description "@code{Tracker.jl} previously provided @code{Flux.jl} with
4430 automatic differentiation for its machine learning platform.")
4431 (license license:expat)))
4433 (define-public julia-typedtables
4435 (name "julia-typedtables")
4441 (url "https://github.com/JuliaData/TypedTables.jl")
4442 (commit (string-append "v" version))))
4443 (file-name (git-file-name name version))
4445 (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i"))))
4446 (build-system julia-build-system)
4448 `(("julia-adapt" ,julia-adapt)
4449 ("julia-splitapplycombine" ,julia-splitapplycombine)
4450 ("julia-tables" ,julia-tables)))
4451 (home-page "https://github.com/JuliaData/TypedTables.jl")
4452 (synopsis "Column-based storage for data analysis in Julia")
4453 (description "@code{TypedTables.jl} provides two column-based storage
4454 containers: @code{Table} and @code{FlexTable}, both of which represent an array
4455 of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use
4456 and fast, and presents a very minimal new interface to learn.")
4457 (license license:expat)))
4459 (define-public julia-unpack
4461 (name "julia-unpack")
4467 (url "https://github.com/mauro3/UnPack.jl")
4468 (commit (string-append "v" version))))
4469 (file-name (git-file-name name version))
4471 (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
4472 (build-system julia-build-system)
4473 (home-page "https://github.com/mauro3/UnPack.jl")
4474 (synopsis "Pack and Unpack macros for Julia")
4475 (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
4476 types, modules, and dictionaries.")
4477 (license license:expat)))
4479 (define-public julia-uris
4487 (url "https://github.com/JuliaWeb/URIs.jl")
4488 (commit (string-append "v" version))))
4489 (file-name (git-file-name name version))
4491 (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
4492 (build-system julia-build-system)
4494 '(#:julia-package-name "URIs" ;required to run tests
4496 (modify-phases %standard-phases
4497 (add-before 'check 'change-dir
4498 ;; Tests must be run from the testdir
4499 (lambda* (#:key source outputs #:allow-other-keys)
4500 (let ((out (assoc-ref outputs "out")))
4502 (string-append out "/share/julia/packages/URIs/test")))
4504 ;; required for tests
4505 (inputs `(("julia-json" ,julia-json)))
4506 (home-page "https://github.com/JuliaWeb/URIs.jl")
4507 (synopsis "URI parsing in Julia")
4508 (description "@code{URIs.jl} is a Julia package that allows parsing and
4509 working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
4511 (license license:expat)))
4513 (define-public julia-unitful
4515 (name "julia-unitful")
4521 (url "https://github.com/PainterQubits/Unitful.jl")
4522 (commit (string-append "v" version))))
4523 (file-name (git-file-name name version))
4525 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
4526 (build-system julia-build-system)
4528 `(("julia-constructionbase" ,julia-constructionbase)))
4529 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
4530 (synopsis "Physical units in Julia")
4531 (description "This package supports SI units and also many other unit
4533 (license license:expat)))
4535 (define-public julia-versionparsing
4537 (name "julia-versionparsing")
4543 (url "https://github.com/JuliaInterop/VersionParsing.jl")
4544 (commit (string-append "v" version))))
4545 (file-name (git-file-name name version))
4547 (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva"))))
4548 (build-system julia-build-system)
4549 (home-page "https://github.com/JuliaInterop/VersionParsing.jl")
4550 (synopsis "Flexible VersionNumber parsing in Julia")
4551 (description "The @code{VersionParsing} package implements flexible parsing
4552 of version-number strings into Julia's built-in @code{VersionNumber} type, via
4553 the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)}
4554 constructor, @code{vparse(string)} can handle version-number strings in a much
4555 wider range of formats than are encompassed by the semver standard. This is
4556 useful in order to support @code{VersionNumber} comparisons applied to
4557 \"foreign\" version numbers from external packages.")
4558 (license license:expat)))
4560 (define-public julia-weakrefstrings
4562 (name "julia-weakrefstrings")
4568 (url "https://github.com/JuliaData/WeakRefStrings.jl")
4569 (commit (string-append "v" version))))
4570 (file-name (git-file-name name version))
4572 (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219"))))
4573 (build-system julia-build-system)
4575 `(("julia-dataapi" ,julia-dataapi)
4576 ("julia-parsers" ,julia-parsers)))
4577 (home-page "https://github.com/JuliaData/WeakRefStrings.jl")
4578 (synopsis "Efficient string representation and transfer in Julia")
4579 (description "This package provides a minimal String type for Julia that
4580 allows for efficient string representation and transfer")
4581 (license license:expat)))
4583 (define-public julia-woodburymatrices
4585 (name "julia-woodburymatrices")
4591 (url "https://github.com/timholy/WoodburyMatrices.jl")
4592 (commit (string-append "v" version))))
4593 (file-name (git-file-name name version))
4595 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
4596 (build-system julia-build-system)
4597 (home-page "https://github.com/timholy/WoodburyMatrices.jl")
4598 (synopsis "Support for the Woodbury matrix identity for Julia")
4599 (description "This package provides support for the Woodbury matrix identity
4600 for the Julia programming language. This is a generalization of the
4601 Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious
4602 for floating-point roundoff errors, so be prepared for a certain amount of
4603 inaccuracy in the result.")
4604 (license license:expat)))
4606 (define-public julia-zipfile
4608 (name "julia-zipfile")
4614 (url "https://github.com/fhs/ZipFile.jl")
4615 (commit (string-append "v" version))))
4616 (file-name (git-file-name name version))
4619 "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
4620 (build-system julia-build-system)
4622 `(("julia-zlib-jll" ,julia-zlib-jll)))
4623 (home-page "https://github.com/fhs/ZipFile.jl")
4624 (synopsis "Read/Write ZIP archives in Julia")
4625 (description "This module provides support for reading and writing ZIP
4626 archives in Julia.")
4627 (license license:expat)))
4629 (define-public julia-zygoterules
4631 (name "julia-zygoterules")
4637 (url "https://github.com/FluxML/ZygoteRules.jl")
4638 (commit (string-append "v" version))))
4639 (file-name (git-file-name name version))
4641 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
4642 (build-system julia-build-system)
4644 `(("julia-macrotools" ,julia-macrotools)))
4645 (home-page "https://github.com/FluxML/ZygoteRules.jl")
4646 (synopsis "Add minimal custom gradients to Zygote")
4647 (description "Minimal package which enables to add custom gradients to
4648 Zygote, without depending on Zygote itself.")
4649 (license license:expat)))
4651 (define-public julia-zygote
4653 (name "julia-zygote")
4659 (url "https://github.com/FluxML/Zygote.jl")
4660 (commit (string-append "v" version))))
4661 (file-name (git-file-name name version))
4663 (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
4664 (build-system julia-build-system)
4666 `(#:tests? #f)) ;require CUDA, not packaged yet
4668 `(("julia-abstractffs" ,julia-abstractffts)
4669 ("julia-chainrules" ,julia-chainrules)
4670 ("julia-diffrules" ,julia-diffrules)
4671 ("julia-fillarrays" ,julia-fillarrays)
4672 ("julia-forwarddiff" ,julia-forwarddiff)
4673 ("julia-irtools" ,julia-irtools)
4674 ("julia-macrotools" ,julia-macrotools)
4675 ("julia-nanmath" ,julia-nanmath)
4676 ("julia-requires" ,julia-requires)
4677 ("julia-specialfunctions" ,julia-specialfunctions)
4678 ("julia-zygote-rules" ,julia-zygoterules)))
4679 (home-page "https://fluxml.ai/Zygote.jl")
4680 (synopsis "Automatic differentiation in Julia")
4681 (description "Zygote provides source-to-source automatic
4682 differentiation (AD) in Julia, and is the next-generation AD system for the
4683 Flux differentiable programming framework.")
4684 (license license:expat)))