gnu: julia-blockarrays: Fix tests on i686-linux.
[jackhill/guix/guix.git] / gnu / packages / julia-xyz.scm
CommitLineData
a1315b7f 1;;; GNU Guix --- Functional package management for GNU
f7a98af0 2;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
35044d3e 3;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
69b13cd4 4;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il>
9cc167fe 5;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
a1315b7f 6;;;
7;;; This file is part of GNU Guix.
8;;;
9;;; GNU Guix is free software; you can redistribute it and/or modify it
10;;; under the terms of the GNU General Public License as published by
11;;; the Free Software Foundation; either version 3 of the License, or (at
12;;; your option) any later version.
13;;;
14;;; GNU Guix is distributed in the hope that it will be useful, but
15;;; WITHOUT ANY WARRANTY; without even the implied warranty of
16;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17;;; GNU General Public License for more details.
18;;;
19;;; You should have received a copy of the GNU General Public License
20;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
21
22(define-module (gnu packages julia-xyz)
23 #:use-module ((guix licenses) #:prefix license:)
7975a64b 24 #:use-module (gnu packages)
7b59508c 25 #:use-module (guix utils)
a1315b7f 26 #:use-module (guix packages)
27 #:use-module (guix git-download)
3291e4ba 28 #:use-module (guix build-system julia)
277fef20 29 #:use-module (gnu packages gcc)
3893f136
EF
30 #:use-module (gnu packages julia-jll)
31 #:use-module (gnu packages python)
7b59508c
EF
32 #:use-module (gnu packages python-xyz)
33 #:use-module (gnu packages version-control))
a1315b7f 34
651a5573 35(define-public julia-abstractffts
36 (package
37 (name "julia-abstractffts")
38 (version "1.0.1")
39 (source
40 (origin
41 (method git-fetch)
42 (uri (git-reference
43 (url "https://github.com/JuliaMath/AbstractFFTS.jl")
44 (commit (string-append "v" version))))
45 (file-name (git-file-name name version))
46 (sha256
47 (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0"))))
48 (build-system julia-build-system)
49 (inputs ;required for tests
50 `(("julia-unitful" ,julia-unitful)))
51 (home-page "https://github.com/JuliaGPU/Adapt.jl")
52 (synopsis "General framework for fast Fourier transforms (FFTs)")
53 (description "This package allows multiple FFT packages to co-exist with
54the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is
55mainly not intended to be used directly. Instead, developers of packages that
56implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the
57types/functions defined in AbstractFFTs.")
58 (license license:expat)))
59
64c1c497 60(define-public julia-abstracttrees
61 (package
62 (name "julia-abstracttrees")
63 (version "0.3.4")
64 (source
65 (origin
66 (method git-fetch)
67 (uri (git-reference
68 (url "https://github.com/JuliaCollections/AbstractTrees.jl")
69 (commit (string-append "v" version))))
70 (file-name (git-file-name name version))
71 (sha256
72 (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8"))))
73 (build-system julia-build-system)
74 (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/")
75 (synopsis "Abstract Julia interfaces for working with trees")
76 (description "This Julia package provides several utilities for working
77with tree-like data structures. Most importantly, it defines the
78@code{children} method that any package that contains such a data structure
79may import and extend in order to take advantage of any generic tree algorithm
80in this package.")
81 (license license:expat)))
82
20767b9b 83(define-public julia-adapt
84 (package
85 (name "julia-adapt")
963ae006 86 (version "3.3.1")
20767b9b 87 (source
88 (origin
89 (method git-fetch)
90 (uri (git-reference
91 (url "https://github.com/JuliaGPU/Adapt.jl")
92 (commit (string-append "v" version))))
81d45a66 93 (file-name (git-file-name name version))
20767b9b 94 (sha256
963ae006 95 (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7"))))
20767b9b 96 (build-system julia-build-system)
97 (home-page "https://github.com/JuliaGPU/Adapt.jl")
98 (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
99 (description "This Julia package provides the @code{adapt(T, x)} function
100acts like @code{convert(T, x)}, but without the restriction of returning a
101@code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to
102be GPU compatible without throwing away the wrapper.")
103 (license license:expat)))
104
60d3484f
EF
105(define-public julia-ansicoloredprinters
106 (package
107 (name "julia-ansicoloredprinters")
108 (version "0.0.1")
109 (source
110 (origin
111 (method git-fetch)
112 (uri (git-reference
113 (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
114 (commit (string-append "v" version))))
115 (file-name (git-file-name name version))
116 (sha256
117 (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
118 (build-system julia-build-system)
119 (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
120 (synopsis "ANSI escape code translator")
121 (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
122ANSI escape codes to another format.")
123 (license license:expat)))
124
130c13c8
EF
125(define-public julia-aqua
126 (package
127 (name "julia-aqua")
f126ac00 128 (version "0.5.1")
130c13c8
EF
129 (source
130 (origin
131 (method git-fetch)
132 (uri (git-reference
133 (url "https://github.com/JuliaTesting/Aqua.jl")
134 (commit (string-append "v" version))))
135 (file-name (git-file-name name version))
136 (sha256
f126ac00 137 (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk"))))
130c13c8 138 (build-system julia-build-system)
017f9a35 139 (arguments
140 `(#:parallel-tests? #f))
130c13c8
EF
141 (home-page "https://github.com/JuliaTesting/Aqua.jl")
142 (synopsis "Automated quality assurance for Julia packages")
143 (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages},
144provides functions to run a few automatable checks for Julia packages.")
145 (license license:expat)))
146
ef159514
EF
147(define-public julia-arrayinterface
148 (package
149 (name "julia-arrayinterface")
70671112 150 (version "3.1.19")
ef159514
EF
151 (source
152 (origin
153 (method git-fetch)
154 (uri (git-reference
155 (url "https://github.com/JuliaArrays/ArrayInterface.jl")
156 (commit (string-append "v" version))))
157 (file-name (git-file-name name version))
158 (sha256
70671112 159 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33"))))
ef159514
EF
160 (build-system julia-build-system)
161 (propagated-inputs
162 `(("julia-ifelse" ,julia-ifelse)
163 ("julia-requires" ,julia-requires)
164 ("julia-static" ,julia-static)))
165 (native-inputs
166 `(("julia-aqua" ,julia-aqua)
167 ("julia-bandedmatrices" ,julia-bandedmatrices)
168 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
169 ("julia-ifelse" ,julia-ifelse)
170 ("julia-offsetarrays" ,julia-offsetarrays)
171 ("julia-staticarrays" ,julia-staticarrays)))
172 (home-page "https://github.com/JuliaArrays/ArrayInterface.jl")
173 (synopsis "Base array interface primitives")
174 (description "The purpose of this library is to solidify extensions to the
175current @code{AbstractArray} interface, which are put to use in package
176ecosystems like @code{DifferentialEquations.jl}. Since these libraries are
177live, this package will serve as a staging ground for ideas before they are
178merged into Base Julia. For this reason, no functionality is exported so that
179if such functions are added and exported in a future Base Julia, there will be
180no issues with the upgrade.")
181 (license license:expat)))
182
6dd2634d
EF
183(define-public julia-arraylayouts
184 (package
185 (name "julia-arraylayouts")
20246050 186 (version "0.7.6")
6dd2634d
EF
187 (source
188 (origin
189 (method git-fetch)
190 (uri (git-reference
191 (url "https://github.com/JuliaMatrices/ArrayLayouts.jl")
192 (commit (string-append "v" version))))
193 (file-name (git-file-name name version))
194 (sha256
20246050 195 (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg"))))
6dd2634d
EF
196 (build-system julia-build-system)
197 (propagated-inputs
198 `(("julia-fillarrays" ,julia-fillarrays)))
199 (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl")
200 (synopsis "Array layouts and general fast linear algebra")
201 (description "This package implements a trait-based framework for describing
202array layouts such as column major, row major, etc. that can be dispatched to
203appropriate BLAS or optimised Julia linear algebra routines. This supports a
204much wider class of matrix types than Julia's in-built @code{StridedArray}.")
205 (license license:expat)))
3fed0af9
EF
206
207(define-public julia-axisalgorithms
208 (package
209 (name "julia-axisalgorithms")
210 (version "1.0.0")
211 (source
212 (origin
213 (method git-fetch)
214 (uri (git-reference
215 (url "https://github.com/timholy/AxisAlgorithms.jl")
216 (commit (string-append "v" version))))
217 (file-name (git-file-name name version))
218 (sha256
219 (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk"))))
220 (build-system julia-build-system)
221 (propagated-inputs
222 `(("julia-woodburymatrices" ,julia-woodburymatrices)))
223 (home-page "https://github.com/timholy/AxisAlgorithms.jl")
224 (synopsis "Filtering and linear algebra routines for multidimensional arrays")
225 (description "@code{AxisAlgorithms} is a collection of filtering and linear
226algebra algorithms for multidimensional arrays. For algorithms that would
227typically apply along the columns of a matrix, you can instead pick an arbitrary
228axis (dimension).")
229 (license license:expat)))
6dd2634d 230
cb66e4ae
EF
231(define-public julia-axisarrays
232 (package
233 (name "julia-axisarrays")
af369949 234 (version "0.4.4")
cb66e4ae
EF
235 (source
236 (origin
237 (method git-fetch)
238 (uri (git-reference
239 (url "https://github.com/JuliaArrays/AxisArrays.jl")
240 (commit (string-append "v" version))))
241 (file-name (git-file-name name version))
242 (sha256
af369949 243 (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk"))))
cb66e4ae
EF
244 (build-system julia-build-system)
245 (propagated-inputs
246 `(("julia-rangearrays" ,julia-rangearrays)
247 ("julia-intervalsets" ,julia-intervalsets)
248 ("julia-itertools" ,julia-itertools)))
249 (native-inputs
250 `(("julia-offsetarrays" ,julia-offsetarrays)
251 ("julia-unitful" ,julia-unitful)))
252 (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/")
253 (synopsis "Arrays where each dimension can have a named axis with values")
254 (description "This package for the Julia language provides an array type
255(the AxisArray) that knows about its dimension names and axis values. This
256allows for indexing by name without incurring any runtime overhead. This
257permits one to implement algorithms that are oblivious to the storage order of
258the underlying arrays. AxisArrays can also be indexed by the values along their
259axes, allowing column names or interval selections.")
260 (license license:expat)))
261
48b9f37a
EF
262(define-public julia-bandedmatrices
263 (package
264 (name "julia-bandedmatrices")
5d45f7b1 265 (version "0.16.10")
48b9f37a
EF
266 (source
267 (origin
268 (method git-fetch)
269 (uri (git-reference
270 (url "https://github.com/JuliaMatrices/BandedMatrices.jl")
271 (commit (string-append "v" version))))
272 (file-name (git-file-name name version))
273 (sha256
5d45f7b1 274 (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism"))))
48b9f37a
EF
275 (build-system julia-build-system)
276 (propagated-inputs
277 `(("julia-arraylayouts" ,julia-arraylayouts)
278 ("julia-fillarrays" ,julia-fillarrays)))
279 (native-inputs
280 `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra)))
281 (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl")
282 (synopsis "Julia package for representing banded matrices")
283 (description "This package supports representing banded matrices by only
284the entries on the bands.")
285 (license license:expat)))
286
03010d5d 287(define-public julia-benchmarktools
288 (package
289 (name "julia-benchmarktools")
ad8c4040 290 (version "1.1.1")
03010d5d 291 (source
292 (origin
293 (method git-fetch)
294 (uri (git-reference
295 (url "https://github.com/JuliaCI/BenchmarkTools.jl")
296 (commit (string-append "v" version))))
297 (file-name (git-file-name name version))
298 (sha256
ad8c4040 299 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8"))))
03010d5d 300 (build-system julia-build-system)
2a749f34 301 (arguments
302 `(#:phases
303 ,@(if (target-x86-32?)
304 '((modify-phases %standard-phases
305 (add-after 'unpack 'remove-failing-tests-i686
306 (lambda _
307 (substitute* "test/GroupsTests.jl"
308 (("@test sprint\\(show, g1\\)")
309 "@test_broken sprint(show, g1)")
310 (("@test sprint\\(show, g1; context = :boundto => 1\\)")
311 "@test_broken sprint(show, g1; context = :boundto => 1)")
312 (("@test sprint\\(show, g1; context = :limit => false\\)")
313 "@test_broken sprint(show, g1; context = :limit => false)")
314 (("@test @test_deprecated") "@test_broken"))
315 (substitute* "test/ExecutionTests.jl"
316 ;; Evaluated: 12 == 8
317 (("@test @ballocated\\(Ref\\(1\\)\\)")
318 "@test_broken @ballocated(Ref(1))"))))))
319 '(%standard-phases))))
03010d5d 320 (propagated-inputs `(("julia-json" ,julia-json)))
321 (home-page "https://github.com/JuliaCI/BenchmarkTools.jl")
322 (synopsis "Benchmarking framework for the Julia language")
323 (description "@code{BenchmarkTools.jl} makes performance tracking of Julia
324code easy by supplying a framework for writing and running groups of
325benchmarks as well as comparing benchmark results.")
326 (license license:expat)))
327
567fa057
EF
328(define-public julia-blockarrays
329 (package
330 (name "julia-blockarrays")
d0381960 331 (version "0.16.8")
567fa057
EF
332 (source
333 (origin
334 (method git-fetch)
335 (uri (git-reference
336 (url "https://github.com/JuliaArrays/BlockArrays.jl")
337 (commit (string-append "v" version))))
338 (file-name (git-file-name name version))
339 (sha256
d0381960 340 (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1"))))
567fa057 341 (build-system julia-build-system)
dcd7c950 342 (arguments
343 `(#:phases
344 ,@(if (target-64bit?)
345 '(%standard-phases)
346 '((modify-phases %standard-phases
347 (add-after 'unpack 'fix-tests-int32-i686
348 (lambda _
349 (substitute* "test/test_blockarrays.jl"
350 (("Int64") "Int32")))))))))
567fa057
EF
351 (propagated-inputs
352 `(("julia-arraylayouts" ,julia-arraylayouts)
353 ("julia-fillarrays" ,julia-fillarrays)))
354 (native-inputs
355 `(("julia-lazyarrays" ,julia-lazyarrays)
356 ("julia-offsetarrays" ,julia-offsetarrays)
357 ("julia-staticarrays" ,julia-staticarrays)))
358 (home-page "https://github.com/JuliaArrays/BlockArrays.jl")
359 (synopsis "BlockArrays for Julia")
360 (description "A block array is a partition of an array into blocks or
361subarrays. This package has two purposes. Firstly, it defines an interface for
362an @code{AbstractBlockArray} block arrays that can be shared among types
363representing different types of block arrays. The advantage to this is that it
364provides a consistent API for block arrays.
365Secondly, it also implements two different type of block arrays that follow the
366@code{AbstractBlockArray} interface. The type @code{BlockArray} stores each
367block contiguously while the type @code{PseudoBlockArray} stores the full matrix
368contiguously. This means that @code{BlockArray} supports fast non copying
369extraction and insertion of blocks while @code{PseudoBlockArray} supports fast
370access to the full matrix to use in in for example a linear solver.")
371 (license license:expat)))
372
30699854
EF
373(define-public julia-blockbandedmatrices
374 (package
375 (name "julia-blockbandedmatrices")
b5df9174 376 (version "0.10.7")
30699854
EF
377 (source
378 (origin
379 (method git-fetch)
380 (uri (git-reference
381 (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
382 (commit (string-append "v" version))))
383 (file-name (git-file-name name version))
384 (sha256
b5df9174 385 (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9"))))
30699854
EF
386 (build-system julia-build-system)
387 (propagated-inputs
388 `(("julia-arraylayouts" ,julia-arraylayouts)
389 ("julia-bandedmatrices" ,julia-bandedmatrices)
390 ("julia-blockarrays" ,julia-blockarrays)
391 ("julia-fillarrays" ,julia-fillarrays)
392 ("julia-matrixfactorizations" ,julia-matrixfactorizations)))
393 (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl")
394 (synopsis "Block-banded matrices and banded-block-banded matrices")
395 (description "This package supports representing block-banded and
396banded-block-banded matrices by only storing the entries in the non-zero bands.
397A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of
398@code{BlockArrays.jl} whose layout of non-zero blocks is banded.")
399 (license license:expat)))
400
4ea3215d
EF
401(define-public julia-bson
402 (package
403 (name "julia-bson")
404 (version "0.3.3")
405 (source
406 (origin
407 (method git-fetch)
408 (uri (git-reference
409 (url "https://github.com/JuliaIO/BSON.jl")
410 (commit (string-append "v" version))))
411 (file-name (git-file-name name version))
412 (sha256
413 (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn"))))
414 (build-system julia-build-system)
415 (native-inputs
416 `(("julia-dataframes" ,julia-dataframes)))
417 (home-page "https://github.com/JuliaIO/BSON.jl")
418 (synopsis "Binary JSON serialisation format")
419 (description "@code{BSON.jl} is a Julia package for working with the Binary
420JSON serialisation format. It can be used as a general store for Julia data
421structures.")
422 (license license:expat)))
423
52d09b1f 424(define-public julia-bufferedstreams
425 (package
426 (name "julia-bufferedstreams")
427 (version "1.0.0")
428 (source
429 (origin
430 (method git-fetch)
431 (uri (git-reference
432 (url "https://github.com/BioJulia/BufferedStreams.jl")
433 (commit (string-append "v" version))))
434 (file-name (git-file-name name version))
435 (sha256
436 (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z"))))
437 (build-system julia-build-system)
438 ;; The package is old and tests are using undefined functions. They also
439 ;; freeze, see
440 ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182
441 (arguments
442 '(#:tests? #f
3af351a7
JBV
443 #:julia-package-name "BufferedStreams"
444 #:julia-package-uuid "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"))
52d09b1f 445 (propagated-inputs `(("julia-compat" ,julia-compat)))
446 (home-page "https://github.com/BioJulia/BufferedStreams.jl")
447 (synopsis "Fast composable IO streams")
448 (description "@code{BufferedStreams.jl} provides buffering for IO
449operations. It can wrap any @code{IO} type automatically making incremental
450reading and writing faster.")
451 (license license:expat)))
452
b91ad832 453(define-public julia-calculus
454 (package
455 (name "julia-calculus")
456 (version "0.5.1")
457 (source
458 (origin
459 (method git-fetch)
460 (uri (git-reference
461 (url "https://github.com/JuliaMath/Calculus.jl")
462 (commit (string-append "v" version))))
463 (file-name (git-file-name name version))
464 (sha256
465 (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2"))))
466 (build-system julia-build-system)
467 (home-page "https://github.com/JuliaMath/Calculus.jl")
468 (synopsis "Common utilities for automatic differentiation")
469 (description "This package provides tools for working with the basic
470calculus operations of differentiation and integration. The @code{Calculus}
471package produces approximate derivatives by several forms of finite
472differencing or produces exact derivative using symbolic differentiation. It
473can also be used to compute definite integrals by different numerical
474methods.")
475 (license license:expat)))
476
9cc167fe
VM
477(define-public julia-categoricalarrays
478 (package
479 (name "julia-categoricalarrays")
480 (version "0.9.7")
481 (source
482 (origin
483 (method git-fetch)
484 (uri (git-reference
485 (url "https://github.com/JuliaData/CategoricalArrays.jl")
486 (commit (string-append "v" version))))
487 (file-name (git-file-name name version))
488 (sha256
489 (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x"))))
490 (build-system julia-build-system)
491 (native-inputs
492 `(("julia-pooledarrays" ,julia-pooledarrays)))
493 (propagated-inputs
494 `(("julia-dataapi" ,julia-dataapi)
495 ("julia-json" ,julia-json)
496 ("julia-json3" ,julia-json3)
497 ("julia-missings" ,julia-missings)
498 ("julia-recipesbase" ,julia-recipesbase)
499 ("julia-structtypes" ,julia-structtypes)))
500 (home-page "https://github.com/JuliaData/CategoricalArrays.jl")
501 (synopsis "Arrays for working with categorical data")
502 (description "This package provides tools for working with categorical
503variables, both with unordered (nominal variables) and ordered categories
504(ordinal variables), optionally with missing values.")
505 (license license:expat)))
506
397f8c48 507(define-public julia-chainrules
508 (package
509 (name "julia-chainrules")
4a79a39b 510 (version "1.1.0")
397f8c48 511 (source
512 (origin
513 (method git-fetch)
514 (uri (git-reference
515 (url "https://github.com/JuliaDiff/ChainRules.jl")
516 (commit (string-append "v" version))))
517 (file-name (git-file-name name version))
518 (sha256
4a79a39b 519 (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70"))))
397f8c48 520 (build-system julia-build-system)
521 (inputs ;required for test
522 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
523 ("julia-finitedifferences" ,julia-finitedifferences)
524 ("julia-nanmath" ,julia-nanmath)
525 ("julia-specialfunctions" ,julia-specialfunctions)))
526 (propagated-inputs
527 `(("julia-chainrulescore" ,julia-chainrulescore)
528 ("julia-compat" ,julia-compat)
529 ("julia-reexport" ,julia-reexport)
530 ("julia-requires" ,julia-requires)))
531 (home-page "https://github.com/JuliaDiff/ChainRules.jl")
532 (synopsis "Common utilities for automatic differentiation")
533 (description "The is package provides a variety of common utilities that
534can be used by downstream automatic differentiation (AD) tools to define and
535execute forward-, reverse-, and mixed-mode primitives.")
536 (license license:expat)))
537
bb1ca1f3 538(define-public julia-chainrulescore
539 (package
540 (name "julia-chainrulescore")
038a7dd5 541 (version "1.0.2")
bb1ca1f3 542 (source
543 (origin
544 (method git-fetch)
545 (uri (git-reference
546 (url "https://github.com/JuliaDiff/ChainRulesCore.jl")
547 (commit (string-append "v" version))))
548 (file-name (git-file-name name version))
549 (sha256
038a7dd5 550 (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb"))))
bb1ca1f3 551 (build-system julia-build-system)
552 (inputs ;required for tests
553 `(("julia-benchmarktools" ,julia-benchmarktools)
554 ("julia-staticarrays" ,julia-staticarrays)))
555 (propagated-inputs
556 `(("julia-compat" ,julia-compat)))
557 (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl")
558 (synopsis "Common utilities used by downstream automatic differentiation tools")
559 (description "The package provides a light-weight dependency for defining
560sensitivities for functions without the need to depend on ChainRules itself.")
561 (license license:expat)))
562
9eb29396 563(define-public julia-chainrulestestutils
564 (package
565 (name "julia-chainrulestestutils")
58927767 566 (version "1.2.3")
9eb29396 567 (source
568 (origin
569 (method git-fetch)
570 (uri (git-reference
571 (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
572 (commit (string-append "v" version))))
573 (file-name (git-file-name name version))
574 (sha256
58927767 575 (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9"))))
9eb29396 576 (build-system julia-build-system)
577 (propagated-inputs
578 `(("julia-chainrulescore" ,julia-chainrulescore)
579 ("julia-compat" ,julia-compat)
580 ("julia-finitedifference" ,julia-finitedifferences)))
581 (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl")
582 (synopsis "Common utilities used by downstream automatic differentiation tools")
583 (description "This package is designed to help in testing
584@code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main
585entry points are @code{ChainRulesTestUtils.frule_test},
586@code{ChainRulesTestUtils.rrule_test}, and
587@code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the
588rules against numerical differentiation (using @code{FiniteDifferences.jl}).
589
590@code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it
591can be a test-only dependency, allowing it to have potentially heavy
592dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.")
593 (license license:expat)))
594
87a6109c 595(define-public julia-codeczlib
596 (package
597 (name "julia-codeczlib")
598 (version "0.7.0")
599 (source
600 (origin
601 (method git-fetch)
602 (uri (git-reference
603 (url "https://github.com/JuliaIO/CodecZlib.jl")
604 (commit (string-append "v" version))))
605 (file-name (git-file-name name version))
606 (sha256
607 (base32 "0xm603nylkwk4bzx66zv1g3syzrvn3jh9spdx7kvcvgszzyrrgh4"))))
608 (build-system julia-build-system)
609 (arguments
610 `(#:phases
611 (modify-phases %standard-phases
612 (add-before 'reset-gzip-timestamps 'make-files-writable
613 (lambda* (#:key outputs #:allow-other-keys)
614 (let ((out (assoc-ref outputs "out")))
615 (for-each make-file-writable
616 (find-files out "\\.gz$"))
617 #t))))))
618 (propagated-inputs
619 `(("julia-zlib-jll" ,julia-zlib-jll)
620 ("julia-transcodingstreams" ,julia-transcodingstreams)))
621 (home-page "https://github.com/JuliaIO/CodecZlib.jl")
622 (synopsis "Zlib codecs for @code{TranscodingStreams.jl}")
623 (description "This package provides zlib codecs for
624@code{TranscodingStreams.jl}.")
625 (license license:expat)))
626
13a8b866 627(define-public julia-colors
628 (package
629 (name "julia-colors")
d9856912 630 (version "0.12.8")
13a8b866 631 (source
632 (origin
633 (method git-fetch)
634 (uri (git-reference
635 (url "https://github.com/JuliaGraphics/Colors.jl")
636 (commit (string-append "v" version))))
637 (file-name (git-file-name name version))
638 (sha256
d9856912 639 (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3"))))
13a8b866 640 (build-system julia-build-system)
641 (propagated-inputs
642 `(("julia-colortypes" ,julia-colortypes)
643 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
644 ("julia-reexport" ,julia-reexport)))
645 (home-page "https://github.com/JuliaGraphics/Colors.jl")
646 (synopsis "Tools for dealing with color")
647 (description "This package provides a wide array of functions for dealing
648with color. This includes conversion between colorspaces, measuring distance
649between colors, simulating color blindness, parsing colors, and generating
650color scales for graphics.")
651 (license license:expat)))
652
a033f810
EF
653(define-public julia-colorschemes
654 (package
655 (name "julia-colorschemes")
9a24fc61 656 (version "3.15.0")
a033f810
EF
657 (source
658 (origin
659 (method git-fetch)
660 (uri (git-reference
661 (url "https://github.com/JuliaGraphics/ColorSchemes.jl")
662 (commit (string-append "v" version))))
663 (file-name (git-file-name name version))
664 (sha256
9a24fc61 665 (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq"))))
a033f810
EF
666 (build-system julia-build-system)
667 (propagated-inputs
668 `(("julia-colors" ,julia-colors)
669 ("julia-colortypes" ,julia-colortypes)
670 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
671 ("julia-staticarrays" ,julia-staticarrays)))
672 (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl")
673 (synopsis "Colorschemes, colormaps, gradients, and palettes")
674 (description "This package provides a collection of colorschemes.")
675 (license license:expat)))
676
9b8b132e 677(define-public julia-colortypes
678 (package
679 (name "julia-colortypes")
2211f3af 680 (version "0.11.0")
9b8b132e 681 (source
682 (origin
683 (method git-fetch)
684 (uri (git-reference
685 (url "https://github.com/JuliaGraphics/ColorTypes.jl")
686 (commit (string-append "v" version))))
687 (file-name (git-file-name name version))
688 (sha256
2211f3af 689 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih"))))
9b8b132e 690 (build-system julia-build-system)
691 (propagated-inputs
692 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
78f48af0 693 (native-inputs
694 `(("julia-documenter" ,julia-documenter)))
9b8b132e 695 (home-page "https://github.com/JuliaGraphics/ColorTypes.jl")
696 (synopsis "Basic color types and constructor")
697 (description "This minimalistic package serves as the foundation for
698working with colors in Julia. It defines basic color types and their
699constructors, and sets up traits and show methods to make them easier to work
700with.")
701 (license license:expat)))
702
495df0b0
EF
703(define-public julia-colorvectorspace
704 (package
705 (name "julia-colorvectorspace")
e538d868 706 (version "0.9.7")
495df0b0
EF
707 (source
708 (origin
709 (method git-fetch)
710 (uri (git-reference
711 (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
712 (commit (string-append "v" version))))
713 (file-name (git-file-name name version))
714 (sha256
e538d868 715 (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi"))))
495df0b0
EF
716 (build-system julia-build-system)
717 (propagated-inputs
718 `(("julia-colortypes" ,julia-colortypes)
719 ("julia-specialfunctions" ,julia-specialfunctions)
720 ("julia-tensorcore" ,julia-tensorcore)))
721 (native-inputs
722 `(("julia-colors" ,julia-colors)))
723 (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl")
724 (synopsis "Treat colors as n-vectors for the purposes of arithmetic")
725 (description "This package is an add-on to @code{ColorTypes.jl} and provides
726fast mathematical operations for objects with types such as RGB and Gray.
727Specifically, with this package both grayscale and RGB colors are treated as if
728they are points in a normed vector space.")
729 (license license:expat)))
730
2405fcb4
EF
731(define-public julia-combinatorics
732 (package
733 (name "julia-combinatorics")
734 (version "1.0.2")
735 (source
736 (origin
737 (method git-fetch)
738 (uri (git-reference
739 (url "https://github.com/JuliaMath/Combinatorics.jl")
740 (commit (string-append "v" version))))
741 (file-name (git-file-name name version))
742 (sha256
743 (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
744 (build-system julia-build-system)
745 (home-page "https://github.com/JuliaMath/Combinatorics.jl")
746 (synopsis "Combinatorics library for Julia")
747 (description "This package provides a combinatorics library for Julia,
748focusing mostly (as of now) on enumerative combinatorics and permutations.")
749 (license license:expat)))
750
2ca38ee4 751(define-public julia-commonsubexpressions
752 (package
753 (name "julia-commonsubexpressions")
754 (version "0.3.0")
755 (source
756 (origin
757 (method git-fetch)
758 (uri (git-reference
759 (url "https://github.com/rdeits/CommonSubexpressions.jl")
760 (commit (string-append "v" version))))
761 (file-name (git-file-name name version))
762 (sha256
763 (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay"))))
764 (build-system julia-build-system)
765 (propagated-inputs
766 `(("julia-macrotools" ,julia-macrotools)))
767 (home-page "https://github.com/rdeits/CommonSubexpressions.jl")
f233bb17
LC
768 (synopsis "@code{@@cse} macro for Julia")
769 (description "This package provides the @code{@@cse} macro, which performs
2ca38ee4 770common subexpression elimination.")
771 (license license:expat)))
772
a1315b7f 773(define-public julia-compat
774 (package
775 (name "julia-compat")
ad970a21 776 (version "3.39.0")
a1315b7f 777 (source
778 (origin
779 (method git-fetch)
780 (uri (git-reference
781 (url "https://github.com/JuliaLang/Compat.jl")
782 (commit (string-append "v" version))))
54721e7e 783 (file-name (git-file-name name version))
a1315b7f 784 (sha256
ad970a21 785 (base32 "0qzvaqi5gqgc747fnajbvvf5vqbh6cwykwky00c7glvmvdsgk3z0"))))
a1315b7f 786 (build-system julia-build-system)
787 (home-page "https://github.com/JuliaLang/Compat.jl")
788 (synopsis "Compatibility across Julia versions")
789 (description "The Compat package is designed to ease interoperability
790between older and newer versions of the Julia language. The Compat package
791provides a macro that lets you use the latest syntax in a backwards-compatible
792way.")
793 (license license:expat)))
eccd448c 794
50026532
EF
795(define-public julia-configurations
796 (package
797 (name "julia-configurations")
798 (version "0.16.4")
799 (source
800 (origin
801 (method git-fetch)
802 (uri (git-reference
803 (url "https://github.com/Roger-luo/Configurations.jl")
804 (commit (string-append "v" version))))
805 (file-name (git-file-name name version))
806 (sha256
807 (base32 "1b23p0zk8dx2sf01cnw177mqci7qd81b9s32ixz9clsh0r0icl1b"))))
808 (build-system julia-build-system)
809 (arguments
810 `(#:phases
811 (modify-phases %standard-phases
3af351a7 812 (add-after 'link-depot 'fix-tests
50026532
EF
813 (lambda _
814 (substitute* "test/runtests.jl"
dbad3334 815 (("option.toml") "test/option.toml"))))
3af351a7 816 (add-after 'link-depot 'dont-use-exproniconlite
50026532
EF
817 (lambda _
818 (substitute* '("Project.toml"
819 "src/Configurations.jl"
820 "test/runtests.jl")
821 (("ExproniconLite") "Expronicon"))
822 (substitute* "Project.toml"
823 (("55351af7-c7e9-48d6-89ff-24e801d99491")
dbad3334 824 "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"))))
825 ,@(if (target-64bit?)
826 '()
827 '((add-after 'unpack 'fix-tests-int32-i686
828 (lambda _
829 (substitute* "test/runtests.jl"
830 (("Int64") "Int32")))))))))
50026532
EF
831 (propagated-inputs
832 `(("julia-crayons" ,julia-crayons)
833 ("julia-expronicon" ,julia-expronicon)
834 ("julia-orderedcollections" ,julia-orderedcollections)))
835 (home-page "https://configurations.rogerluo.dev/stable/")
836 (synopsis "Tools for options and configurations in Julia")
837 (description "@code{Configurations.jl} provides a macro @code{@@option} to
838let you define @code{structs} to represent options/configurations, and serialize
839between different option/configuration file formats such as @code{TOML}.")
840 (license license:expat)))
841
35044d3e 842(define-public julia-constructionbase
b694fd4b
EF
843 (package
844 (name "julia-constructionbase")
57e5c907 845 (version "1.3.0")
b694fd4b
EF
846 (source
847 (origin
848 (method git-fetch)
849 (uri (git-reference
850 (url "https://github.com/JuliaObjects/ConstructionBase.jl")
851 (commit (string-append "v" version))))
852 (file-name (git-file-name name version))
853 (sha256
57e5c907 854 (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q"))))
b694fd4b
EF
855 (build-system julia-build-system)
856 (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/")
857 (synopsis "Primitive functions for construction of objects")
858 (description "This very lightweight package provides primitive functions
35044d3e 859for construction of objects.")
b694fd4b 860 (license license:expat)))
35044d3e 861
9e21a2a1
EF
862(define-public julia-coordinatetransformations
863 (package
864 (name "julia-coordinatetransformations")
865 (version "0.6.1")
866 (source
867 (origin
868 (method git-fetch)
869 (uri (git-reference
870 (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
871 (commit (string-append "v" version))))
872 (file-name (git-file-name name version))
873 (sha256
874 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d"))))
875 (build-system julia-build-system)
9e21a2a1
EF
876 (propagated-inputs
877 `(("julia-staticarrays" ,julia-staticarrays)))
8ee9516a 878 (native-inputs
879 `(("julia-documenter" ,julia-documenter)
880 ("julia-forwarddiff" ,julia-forwarddiff)
881 ("julia-unitful" ,julia-unitful)))
9e21a2a1
EF
882 (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl")
883 (synopsis "Coordinate transformations in Julia")
884 (description "@code{CoordinateTransformations} is a Julia package to manage
885simple or complex networks of coordinate system transformations.
886Transformations can be easily applied, inverted, composed, and differentiated
887(both with respect to the input coordinates and with respect to transformation
888parameters such as rotation angle). Transformations are designed to be
889light-weight and efficient enough for, e.g., real-time graphical applications,
890while support for both explicit and automatic differentiation makes it easy to
891perform optimization and therefore ideal for computer vision applications such
892as SLAM (simultaneous localization and mapping).")
893 (license license:expat)))
894
a9db2df4
EF
895(define-public julia-crayons
896 (package
897 (name "julia-crayons")
898 (version "4.0.4")
899 (source
900 (origin
901 (method git-fetch)
902 (uri (git-reference
903 (url "https://github.com/KristofferC/Crayons.jl")
904 (commit (string-append "v" version))))
905 (file-name (git-file-name name version))
906 (sha256
907 (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z"))))
908 (build-system julia-build-system)
909 (home-page "https://github.com/KristofferC/Crayons.jl")
910 (synopsis "Colored and styled strings for terminals")
911 (description "Crayons is a package that makes it simple to write strings in
912different colors and styles to terminals. It supports the 16 system colors,
913both the 256 color and 24 bit true color extensions, and the different text
914styles available to terminals.")
915 (license license:expat)))
916
ccbf9c45
EF
917(define-public julia-dataapi
918 (package
919 (name "julia-dataapi")
e076ed6e 920 (version "1.7.0")
ccbf9c45
EF
921 (source
922 (origin
923 (method git-fetch)
924 (uri (git-reference
925 (url "https://github.com/JuliaData/DataAPI.jl")
926 (commit (string-append "v" version))))
927 (file-name (git-file-name name version))
928 (sha256
e076ed6e 929 (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7"))))
ccbf9c45
EF
930 (build-system julia-build-system)
931 (home-page "https://github.com/JuliaData/DataAPI.jl")
932 (synopsis "Data-focused namespace for packages to share functions")
933 (description "This package provides a namespace for data-related generic
934function definitions to solve the optional dependency problem; packages wishing
935to share and/or extend functions can avoid depending directly on each other by
936moving the function definition to DataAPI.jl and each package taking a
937dependency on it.")
938 (license license:expat)))
939
bfde12f7
EF
940(define-public julia-dataframes
941 (package
942 (name "julia-dataframes")
943 (version "1.2.2")
944 (source
945 (origin
946 (method git-fetch)
947 (uri (git-reference
948 (url "https://github.com/JuliaData/DataFrames.jl")
949 (commit (string-append "v" version))))
950 (file-name (git-file-name name version))
951 (sha256
952 (base32 "1bk0amrghgjrkyn1mm4ac23swwbgszl1d0qyl9137qj5zvv9dasp"))))
953 (build-system julia-build-system)
954 (arguments
955 `(#:phases
956 (modify-phases %standard-phases
3af351a7 957 (add-after 'link-depot 'skip-failing-test
bfde12f7
EF
958 (lambda _
959 ;; Tests with non-standard colors.
960 (substitute* "test/show.jl"
961 (("test (sprint\\(show, df, context=:color=>true)" _ test)
962 (string-append "test_nowarn " test)))
963 (substitute* "test/io.jl"
964 (("testset \\\"improved.*" all)
965 (string-append all "return\n")))
966 (substitute* "test/join.jl"
967 (("test (levels\\(outerjoin\\(B)" _ test)
968 (string-append "test_nowarn " test)))
969 #t)))))
970 (propagated-inputs
971 `(("julia-dataapi" ,julia-dataapi)
972 ("julia-invertedindices" ,julia-invertedindices)
973 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
974 ("julia-missings" ,julia-missings)
975 ("julia-pooledarrays" ,julia-pooledarrays)
976 ("julia-prettytables" ,julia-prettytables)
977 ("julia-reexport" ,julia-reexport)
978 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
979 ("julia-tables" ,julia-tables)
980 ("julia-tabletraits" ,julia-tabletraits)))
981 (native-inputs
982 `(("julia-categoricalarrays" ,julia-categoricalarrays)
983 ("julia-combinatorics" ,julia-combinatorics)
984 ("julia-datastructures" ,julia-datastructures)
985 ("julia-datavalues" ,julia-datavalues)
986 ("julia-offsetarrays" ,julia-offsetarrays)
987 ("julia-unitful" ,julia-unitful)))
988 (home-page "https://dataframes.juliadata.org/stable/")
989 (synopsis "In-memory tabular data")
990 (description "This package provides a set of tools for working with tabular
991data in Julia. Its design and functionality are similar to those of Pandas from
992Python or @code{data.frame}, @code{data.table} and @code{dplyr} from R, making
993it a great general purpose data science tool, especially for those coming to
994Julia from R or Python.")
995 (license license:expat)))
996
6545cef5 997(define-public julia-datastructures
998 (package
999 (name "julia-datastructures")
1000 (version "0.18.9")
1001 (source
1002 (origin
1003 (method git-fetch)
1004 (uri (git-reference
1005 (url "https://github.com/JuliaCollections/DataStructures.jl")
1006 (commit (string-append "v" version))))
1007 (file-name (git-file-name name version))
1008 (sha256
1009 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
1010 (propagated-inputs
1011 `(("julia-compat" ,julia-compat)
1012 ("julia-orderedcollections" ,julia-orderedcollections)))
1013 (build-system julia-build-system)
7fee8a46 1014 (arguments
1015 `(#:phases
1016 ,@(if (target-x86-32?)
1017 '((modify-phases %standard-phases
1018 (add-after 'unpack 'remove-failing-test-i686
1019 (lambda _
1020 ;; The evaluation returns the correct value,
1021 ;; Evaluated: "Accumulator(1 => 3, 3 => 4)"
1022 ;; but, for some reasons, is considered as failed.
1023 (substitute* "test/test_accumulator.jl"
1024 (("@test sprint\\(show,Accumulator\\(1 => 3, 3 => 4\\)\\)")
1025 "@test_broken sprint(show, Accumulator(1 => 3, 3 => 4))"))))))
1026 '(%standard-phases))))
6545cef5 1027 (home-page "https://github.com/JuliaCollections/DataStructures.jl")
1028 (synopsis "Julia module providing different data structures")
1029 (description "This package implements a variety of data structures,
1030including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
1031@code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
1032 (license license:expat)))
1033
21df298e
EF
1034(define-public julia-datavalueinterfaces
1035 (package
1036 (name "julia-datavalueinterfaces")
1037 (version "1.0.0")
1038 (source
1039 (origin
1040 (method git-fetch)
1041 (uri (git-reference
1042 (url "https://github.com/queryverse/DataValueInterfaces.jl")
1043 (commit (string-append "v" version))))
1044 (file-name (git-file-name name version))
1045 (sha256
1046 (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8"))))
1047 (build-system julia-build-system)
1048 (home-page "https://github.com/queryverse/DataValueInterfaces.jl")
1049 (synopsis "Interface for DataValues.jl")
1050 (description "This package allows a few \"forward\" definitions for the
1051@code{DataValues.jl} package that other packages can utilize for integration
1052without having to take direct dependencies.")
1053 (license license:expat)))
1054
e886181b
EF
1055(define-public julia-datavalues
1056 (package
1057 (name "julia-datavalues")
1058 (version "0.4.13")
1059 (source
1060 (origin
1061 (method git-fetch)
1062 (uri (git-reference
1063 (url "https://github.com/queryverse/DataValues.jl")
1064 (commit (string-append "v" version))))
1065 (file-name (git-file-name name version))
1066 (sha256
1067 (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv"))))
1068 (build-system julia-build-system)
1069 (arguments
21747ffa
EF
1070 `(#:tests? #f ; Tests need upgrading with newer Julia version.
1071 #:phases
e886181b 1072 (modify-phases %standard-phases
3af351a7 1073 (add-after 'link-depot 'skip-known-failing-tests
e886181b
EF
1074 (lambda _
1075 ;; See upstream report:
1076 ;; https://github.com/queryverse/DataValues.jl/issues/83
1077 (substitute* "test/array/test_reduce.jl"
1078 ((".*DataValue\\(mapreduce.*") "")
1079 ((".*DataValue\\(method\\(f.*") ""))
1080 #t)))))
1081 (propagated-inputs
1082 `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces)))
1083 (home-page "https://github.com/queryverse/DataValues.jl")
1084 (synopsis "Missing values for Julia")
1085 (description "This package provides the type @code{DataValue} that is used
1086to represent missing data.")
1087 (license license:expat)))
1088
52811a76
EF
1089(define-public julia-deepdiffs
1090 (package
1091 (name "julia-deepdiffs")
1092 (version "1.2.0")
1093 (source
1094 (origin
1095 (method git-fetch)
1096 (uri (git-reference
1097 (url "https://github.com/ssfrr/DeepDiffs.jl")
1098 (commit (string-append "v" version))))
1099 (file-name (git-file-name name version))
1100 (sha256
1101 (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds"))))
1102 (build-system julia-build-system)
1103 (home-page "https://github.com/ssfrr/DeepDiffs.jl")
1104 (synopsis "Compute and pretty-print diffs for data structures")
1105 (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function,
1106which finds and displays differences (diffs) between Julia data structures. It
1107supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing
1108dictionaries where values associated with a particular key may change,
1109@code{deepdiff} will recurse into value to provide a more detailed diff.")
1110 (license license:expat)))
1111
f74305a0
EF
1112(define-public julia-dictionaries
1113 (package
1114 (name "julia-dictionaries")
23dbed6f 1115 (version "0.3.10")
f74305a0
EF
1116 (source
1117 (origin
1118 (method git-fetch)
1119 (uri (git-reference
1120 (url "https://github.com/andyferris/Dictionaries.jl")
1121 (commit (string-append "v" version))))
1122 (file-name (git-file-name name version))
1123 (sha256
23dbed6f 1124 (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5"))))
f74305a0
EF
1125 (build-system julia-build-system)
1126 (propagated-inputs
1127 `(("julia-indexing" ,julia-indexing)))
1128 (home-page "https://github.com/andyferris/Dictionaries.jl")
1129 (synopsis "Alternative interface for dictionaries in Julia")
1130 (description "This package provides an alternative interface for
1131dictionaries in Julia, for improved productivity and performance.")
1132 (license license:expat)))
1133
6ee82f63
EF
1134(define-public julia-distances
1135 (package
1136 (name "julia-distances")
1137 (version "0.10.3")
1138 (source
1139 (origin
1140 (method git-fetch)
1141 (uri (git-reference
1142 (url "https://github.com/JuliaStats/Distances.jl")
1143 (commit (string-append "v" version))))
1144 (file-name (git-file-name name version))
1145 (sha256
1146 (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig"))))
1147 (build-system julia-build-system)
1148 (arguments
1149 `(#:phases
1150 (modify-phases %standard-phases
3af351a7 1151 (add-after 'link-depot 'skip-flakey-tests
6ee82f63 1152 (lambda _
c20c9e16
EF
1153 ;; Some combination of these tests fail nondeterministically
1154 ;; each of the times this package is built.
6ee82f63
EF
1155 (substitute* "test/test_dists.jl"
1156 (("test dyz ≥") "test_nowarn dyz ≥")
1157 (("test dist\\(y, x") "test_nowarn dist(y, x")
c20c9e16
EF
1158 (("test dist\\(z, x") "test_nowarn dist(z, x")
1159 (("test dist\\(z, y") "test_nowarn dist(z, y")))))))
6ee82f63
EF
1160 (propagated-inputs
1161 `(("julia-statsapi" ,julia-statsapi)))
1162 (native-inputs
1163 `(("julia-offsetarrays" ,julia-offsetarrays)
1164 ("julia-unitful" ,julia-unitful)))
1165 (home-page "https://github.com/JuliaStats/Distances.jl")
1166 (synopsis "Julia package for evaluating distances (metrics) between vectors")
1167 (description "A Julia package for evaluating distances(metrics) between
1168vectors. This package also provides optimized functions to compute column-wise
1169and pairwise distances, which are often substantially faster than a
1170straightforward loop implementation.")
1171 (license license:expat)))
1172
9e77eb58
EF
1173(define-public julia-docstringextensions
1174 (package
1175 (name "julia-docstringextensions")
96ebbd45 1176 (version "0.8.5")
9e77eb58
EF
1177 (source
1178 (origin
1179 (method git-fetch)
1180 (uri (git-reference
1181 (url "https://github.com/JuliaDocs/DocStringExtensions.jl")
1182 (commit (string-append "v" version))))
1183 (file-name (git-file-name name version))
1184 (sha256
96ebbd45 1185 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb"))))
9e77eb58 1186 (build-system julia-build-system)
fcc900bd
EF
1187 (arguments
1188 `(#:tests? #f)) ; Tests try to read SSL certificates.
9e77eb58
EF
1189 (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/")
1190 (synopsis "Extensions for Julia's docsystem")
1191 (description "This package provides a collection of useful extensions for
1192Julia's built-in docsystem. These are features that are not yet mature enough
1193to be considered for inclusion in Base, or that have sufficiently niche use
1194cases that including them with the default Julia installation is not seen as
1195valuable enough at this time.")
1196 (license license:expat)))
1197
7b59508c
EF
1198;; By removing all the javascript and css downloads any HTML documentation
1199;; produced by this package will not be very useful.
1200(define-public julia-documenter
1201 (package
1202 (name "julia-documenter")
1203 (version "0.27.7")
1204 (source
1205 (origin
1206 (method git-fetch)
1207 (uri (git-reference
1208 (url "https://github.com/JuliaDocs/Documenter.jl")
1209 (commit (string-append "v" version))))
1210 (file-name (git-file-name name version))
1211 (sha256
1212 (base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam"))))
1213 (build-system julia-build-system)
1214 (arguments
1215 `(#:phases
1216 (modify-phases %standard-phases
3af351a7 1217 (add-after 'link-depot 'patch-source
7b59508c
EF
1218 (lambda* (#:key inputs #:allow-other-keys)
1219 (substitute* "src/Deps.jl"
1220 (("pip install")
1221 (string-append (assoc-ref inputs "python")
1222 "/bin/pip install")))
1223 #t))
3af351a7 1224 (add-after 'link-depot 'remove-javascript-downloads
7b59508c
EF
1225 (lambda _
1226 (substitute* "src/Writers/HTMLWriter.jl"
1227 (("cdnjs.cloudflare.com") "example.com"))
1228 ;; Removing the javascript downloads causes these tests fail.
1229 (substitute* "test/examples/tests.jl"
1230 ((".*Main\\.examples_html_doc.*") "")
1231 ((".*Main\\.examples_html_mathjax3_doc.*") ""))
1232 #t)))))
1233 (propagated-inputs
1234 `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
1235 ("julia-docstringextensions" ,julia-docstringextensions)
1236 ("julia-iocapture" ,julia-iocapture)
1237 ("julia-json" ,julia-json)))
1238 (inputs
1239 `(("python" ,python-wrapper)))
1240 (native-inputs
1241 `(("git" ,git-minimal)
1242 ("julia-documentermarkdown" ,julia-documentermarkdown)
1243 ("julia-documentertools" ,julia-documentertools)))
1244 (home-page "https://juliadocs.github.io/Documenter.jl")
1245 (synopsis "Documentation generator for Julia")
1246 (description "This package provides a documentation generator for Julia.")
1247 (license license:expat)))
1248
1249(define julia-documenter-bootstrap
1250 (package
1251 (inherit julia-documenter)
1252 (name "julia-documenter-bootstrap")
1253 (arguments
1254 (substitute-keyword-arguments (package-arguments julia-documenter)
1255 ((#:phases phases)
1256 `(modify-phases ,phases
1257 (delete 'patch-source)))
1258 ;; Not all dependencies available in bootstrap version.
1259 ((#:tests? _ #f) #f)))
1260 (inputs `())
1261 (native-inputs `())))
1262
1263(define-public julia-documentermarkdown
1264 (package
1265 (name "julia-documentermarkdown")
1266 (version "0.2.2")
1267 (source
1268 (origin
1269 (method git-fetch)
1270 (uri (git-reference
1271 (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1272 (commit (string-append "v" version))))
1273 (file-name (git-file-name name version))
1274 (sha256
1275 (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
1276 (build-system julia-build-system)
1277 (inputs
1278 ;; We don't want to propagate the bootstrap version.
1279 ;; Cycle with Documenter.jl in later versions.
1280 `(("julia-documenter" ,julia-documenter-bootstrap)))
1281 (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
1282 (synopsis "Documenter's Markdown")
1283 (description "This package enables the Markdown / MkDocs backend of
1284@code{Documenter.jl}.")
1285 (license license:expat)))
1286
1287(define-public julia-documentertools
1288 (package
1289 (name "julia-documentertools")
1290 (version "0.1.13")
1291 (source
1292 (origin
1293 (method git-fetch)
1294 (uri (git-reference
1295 (url "https://github.com/JuliaDocs/DocumenterTools.jl")
1296 (commit (string-append "v" version))))
1297 (file-name (git-file-name name version))
1298 (sha256
1299 (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
1300 (build-system julia-build-system)
1301 (arguments
1302 `(#:tests? #f)) ; Tests require network.
1303 (inputs
1304 ;; We don't want to propagate the bootstrap version.
1305 ;; Cycle with Documenter.jl in later versions.
1306 `(("julia-documenter" ,julia-documenter-bootstrap)))
1307 (propagated-inputs
1308 `(("julia-docstringextensions" ,julia-docstringextensions)
1309 ("julia-gumbo" ,julia-gumbo)
1310 ("julia-sass" ,julia-sass)))
1311 (native-inputs
1312 `(("julia-example" ,julia-example)))
1313 (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
1314 (synopsis "Extra tools for setting up Documenter.jl")
1315 (description "This package contains utilities for setting up documentation
1316generation with @code{Documenter.jl}.")
1317 (license license:expat)))
1318
7bf791ee 1319(define-public julia-diffresults
1320 (package
1321 (name "julia-diffresults")
1322 (version "1.0.3")
1323 (source
1324 (origin
1325 (method git-fetch)
1326 (uri (git-reference
1327 (url "https://github.com/JuliaDiff/DiffResults.jl")
1328 (commit (string-append "v" version))))
1329 (file-name (git-file-name name version))
1330 (sha256
1331 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v"))))
1332 (propagated-inputs
1333 `(("julia-staticarrays" ,julia-staticarrays)))
1334 (build-system julia-build-system)
1335 (home-page "https://github.com/JuliaDiff/DiffResults.jl")
1336 (synopsis "In-place differentiation methods of primal values at multi-order")
1337 (description "This package provides the @code{DiffResult} type, which can
1338be passed to in-place differentiation methods instead of an output buffer.")
1339 (license license:expat)))
1340
33e5152a 1341(define-public julia-diffrules
1342 (package
1343 (name "julia-diffrules")
1344 (version "1.0.2")
1345 (source
1346 (origin
1347 (method git-fetch)
1348 (uri (git-reference
1349 (url "https://github.com/JuliaDiff/DiffRules.jl")
1350 (commit (string-append "v" version))))
1351 (file-name (git-file-name name version))
1352 (sha256
1353 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl"))))
1354 (propagated-inputs
1355 `(("julia-nanmath" ,julia-nanmath)
1356 ("julia-specialfunctions" ,julia-specialfunctions)))
1357 (build-system julia-build-system)
1358 (home-page "https://github.com/JuliaDiff/DiffRules.jl")
1359 (synopsis "Primitive differentiation rules")
1360 (description "This package provides primitive differentiation rules that
1361can be composed via various formulations of the chain rule. Using
1362@code{DiffRules}, new differentiation rules can defined, query whether or not
1363a given rule exists, and symbolically apply rules to simple Julia expressions.")
1364 (license license:expat)))
1365
df4be2e9 1366(define-public julia-difftests
1367 (package
1368 (name "julia-difftests")
1369 (version "0.1.1")
1370 (source
1371 (origin
1372 (method git-fetch)
1373 (uri (git-reference
1374 (url "https://github.com/JuliaDiff/DiffTests.jl")
1375 (commit (string-append "v" version))))
1376 (file-name (git-file-name name version))
1377 (sha256
1378 (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57"))))
1379 (build-system julia-build-system)
1380 (home-page "https://github.com/JuliaDiff/DiffTests.jl")
1381 (synopsis "Common test functions for differentiation tools")
1382 (description "This package contains a common suite of test functions for
1383stressing the robustness of differentiation tools.")
1384 (license license:expat)))
ae131820
EF
1385
1386(define-public julia-dualnumbers
1387 (package
1388 (name "julia-dualnumbers")
1389 (version "0.6.5")
1390 (source
1391 (origin
1392 (method git-fetch)
1393 (uri (git-reference
1394 (url "https://github.com/JuliaDiff/DualNumbers.jl")
1395 (commit (string-append "v" version))))
1396 (file-name (git-file-name name version))
1397 (sha256
1398 (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5"))))
1399 (build-system julia-build-system)
1400 (arguments
1401 `(#:phases
1402 (modify-phases %standard-phases
3af351a7 1403 (add-after 'link-depot 'adjust-test-suite
ae131820
EF
1404 (lambda _
1405 (substitute* "test/runtests.jl"
1406 ;; Seems to not play nicely with SpecialFunctions
1407 ((".*isempty.*") "")))))))
1408 (propagated-inputs
1409 `(("julia-calculus" ,julia-calculus)
1410 ("julia-nanmath" ,julia-nanmath)
1411 ("julia-specialfunctions" ,julia-specialfunctions)))
1412 (home-page "https://github.com/JuliaDiff/DualNumbers.jl")
1413 (synopsis "Represent dual numbers and for perform dual algebra")
1414 (description "The @code{DualNumbers} Julia package defines the @code{Dual}
1415type to represent dual numbers, and supports standard mathematical operations on
1416them. Conversions and promotions are defined to allow performing operations on
1417combinations of dual numbers with predefined Julia numeric types.")
1418 (license license:expat)))
df4be2e9 1419
25ece40e
EF
1420(define-public julia-ellipsisnotation
1421 (package
1422 (name "julia-ellipsisnotation")
1423 (version "1.1.0")
1424 (source
1425 (origin
1426 (method git-fetch)
1427 (uri (git-reference
1428 (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1429 (commit (string-append "v" version))))
1430 (file-name (git-file-name name version))
1431 (sha256
1432 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7"))))
1433 (build-system julia-build-system)
0f15f774
EF
1434 (arguments
1435 `(#:phases
1436 (modify-phases %standard-phases
3af351a7 1437 (add-after 'link-depot 'adjust-test-suite
0f15f774
EF
1438 (lambda _
1439 (substitute* "test/runtests.jl"
1440 ;; Seems to not play nicely with Julia-1.6.
1441 ((".*basic.jl.*") "")))))))
25ece40e
EF
1442 (propagated-inputs
1443 `(("julia-arrayinterface" ,julia-arrayinterface)))
1444 (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl")
1445 (synopsis "Elipsis notation implementation")
1446 (description "This implements the notation @code{..} for indexing arrays.
1447It's similar to the Python @code{...} in that it means \"all of the columns
1448before (or after)\".")
1449 (license license:expat)))
1450
fffb1e72 1451(define-public julia-example
1452 (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
1453 (package
1454 (name "julia-example")
1455 (version "0.5.4") ;tag not created upstream
1456 (source
1457 (origin
1458 (method git-fetch)
1459 (uri (git-reference
1460 (url "https://github.com/JuliaLang/Example.jl")
1461 (commit commit)))
1462 (file-name (git-file-name name version))
1463 (sha256
1464 (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx"))))
1465 (build-system julia-build-system)
1466 (home-page "https://github.com/JuliaLang/Example.jl")
1467 (synopsis "Module providing examples")
1468 (description "This package provides various examples.")
1469 (license license:expat))))
1470
5ba67ed6
EF
1471;; ExproniconLite.jl is autogenerated from this package.
1472(define-public julia-expronicon
1473 (package
1474 (name "julia-expronicon")
1475 (version "0.6.10")
1476 (source
1477 (origin
1478 (method git-fetch)
1479 (uri (git-reference
1480 (url "https://github.com/Roger-luo/Expronicon.jl")
1481 (commit (string-append "v" version))))
1482 (file-name (git-file-name name version))
1483 (sha256
1484 (base32 "0h8aaynqlxrkn8575k5vqmhzil4vvxchhf0bcxa6zwawp558gj2y"))))
1485 (build-system julia-build-system)
1486 (arguments
1487 `(#:phases
1488 (modify-phases %standard-phases
3af351a7 1489 (add-after 'link-depot 'skip-network-tests
5ba67ed6
EF
1490 (lambda _
1491 (substitute* "test/runtests.jl"
1492 ;; This test tries to access the Julia package registry.
1493 ((".*expand\\.jl.*") "")))))))
1494 (propagated-inputs
1495 `(("julia-mlstyle" ,julia-mlstyle)))
1496 (native-inputs
1497 `(("julia-documenter" ,julia-documenter)))
1498 (home-page "https://expronicon.rogerluo.dev/dev/")
1499 (synopsis "Collective tools for metaprogramming on Julia Expr")
1500 (description "This package provides a collection of tools for
1501metaprogramming on Julia Expr, the meta programming standard library for
1502@code{MLStyle}.")
1503 (license license:expat)))
1504
73b6f78c
EF
1505(define-public julia-exprtools
1506 (package
1507 (name "julia-exprtools")
231387c3 1508 (version "0.1.6")
73b6f78c
EF
1509 (source
1510 (origin
1511 (method git-fetch)
1512 (uri (git-reference
1513 (url "https://github.com/invenia/ExprTools.jl")
1514 (commit (string-append "v" version))))
1515 (file-name (git-file-name name version))
1516 (sha256
231387c3 1517 (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4"))))
73b6f78c
EF
1518 (build-system julia-build-system)
1519 (home-page "https://github.com/invenia/ExprTools.jl")
1520 (synopsis "Light-weight expression manipulation tools")
1521 (description "@code{ExprTools} provides tooling for working with Julia
1522expressions during metaprogramming. This package aims to provide light-weight
1523performant tooling without requiring additional package dependencies.")
1524 (license license:expat)))
1525
0c1b3444
EF
1526(define-public julia-ffmpeg
1527 (package
1528 (name "julia-ffmpeg")
bef5db80 1529 (version "0.4.1")
0c1b3444
EF
1530 (source
1531 (origin
1532 (method git-fetch)
1533 (uri (git-reference
1534 (url "https://github.com/JuliaIO/FFMPEG.jl")
1535 (commit (string-append "v" version))))
1536 (file-name (git-file-name name version))
1537 (sha256
bef5db80 1538 (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b"))))
0c1b3444
EF
1539 (build-system julia-build-system)
1540 (propagated-inputs
1541 `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll)
1542 ("julia-x264-jll" ,julia-x264-jll)))
1543 (home-page "https://github.com/JuliaIO/FFMPEG.jl")
1544 (synopsis "Julia Package for ffmpeg")
1545 (description "This package is made to be included into packages that just
1546need the ffmpeg binaries + executables, and don't want the overhead of
1547@code{VideoIO.jl}.")
1548 (license license:expat)))
1549
9810337b
EF
1550(define-public julia-fileio
1551 (package
1552 (name "julia-fileio")
1553 (version "1.9.1")
1554 (source
1555 (origin
1556 (method git-fetch)
1557 (uri (git-reference
1558 (url "https://github.com/JuliaIO/FileIO.jl")
1559 (commit (string-append "v" version))))
1560 (file-name (git-file-name name version))
1561 (sha256
1562 (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
1563 (build-system julia-build-system)
1564 (arguments
1565 `(#:phases
1566 (modify-phases %standard-phases
1567 (delete 'reset-gzip-timestamps)
3af351a7 1568 (add-after 'link-depot 'skip-network-tests
9810337b
EF
1569 (lambda _
1570 ;; These tests try to download audio/video files.
1571 (substitute* "test/query.jl"
1572 (("testset.*(MP4|OGG|MATROSKA).*" all)
1573 (string-append all "return\n")))
1574 (substitute* "test/loadsave.jl"
1575 (("testset.*CSVFiles.*" all)
1576 (string-append all "return\n")))
1577 ;; This test tries to download a Julia package.
1578 (substitute* "test/error_handling.jl"
1579 (("testset.*Not installed.*" all)
1580 (string-append all "return\n")))
1581 ;; This test tries to write to the store.
1582 ;; (Error says can't find User 0)
1583 (substitute* "test/runtests.jl"
1584 ((".*test_mimesave.*") "")))))))
1585 (propagated-inputs
1586 `(("julia-requires" ,julia-requires)))
1587 (native-inputs
1588 `(("julia-colortypes" ,julia-colortypes)
1589 ("julia-filepathsbase" ,julia-filepathsbase)
1590 ("julia-http" ,julia-http)))
1591 (home-page "https://github.com/JuliaIO/FileIO.jl")
1592 (synopsis "Main Package for IO, loading all different kind of files")
1593 (description "@code{FileIO} aims to provide a common framework for detecting
1594file formats and dispatching to appropriate readers/writers. The two core
1595functions in this package are called @code{load} and @code{save}, and offer
1596high-level support for formatted files (in contrast with Julia's low-level
1597@code{read} and @code{write}).")
1598 (license license:expat)))
1599
08ad8d69
EF
1600(define-public julia-filepathsbase
1601 (package
1602 (name "julia-filepathsbase")
1603 (version "0.9.10")
1604 (source
1605 (origin
1606 (method git-fetch)
1607 (uri (git-reference
1608 (url "https://github.com/rofinn/FilePathsBase.jl")
1609 (commit (string-append "v" version))))
1610 (file-name (git-file-name name version))
1611 (sha256
1612 (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
1613 (build-system julia-build-system)
1614 (arguments
1615 `(#:tests? #f)) ; Cycle with JLSO.jl
1616 (home-page "https://github.com/rofinn/FilePathsBase.jl")
1617 (synopsis "Filesystem path types in Julia")
1618 (description "@code{FilePathsBase.jl} provides a type based approach to
1619working with filesystem paths in Julia.")
1620 (license license:expat)))
1621
a0d3a73f 1622(define-public julia-fillarrays
1623 (package
1624 (name "julia-fillarrays")
d13e8acb 1625 (version "0.12.6")
a0d3a73f 1626 (source
1627 (origin
1628 (method git-fetch)
1629 (uri (git-reference
1630 (url "https://github.com/JuliaArrays/FillArrays.jl")
1631 (commit (string-append "v" version))))
1632 (file-name (git-file-name name version))
1633 (sha256
d13e8acb 1634 (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz"))))
a0d3a73f 1635 (build-system julia-build-system)
1636 (inputs ;required by tests
1637 `(("julia-staticarrays" ,julia-staticarrays)))
1638 (home-page "https://github.com/JuliaArrays/FillArrays.jl")
1639 (synopsis "Lazy matrix representation")
239f0259 1640 (description "This package lazily represents matrices filled with
a0d3a73f 1641a single entry, as well as identity matrices. This package exports the
1642following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros},
1643@code{Trues} and @code{Falses}.")
1644 (license license:expat)))
1645
9f9d887e
EF
1646(define-public julia-finitediff
1647 (package
1648 (name "julia-finitediff")
f7d79b96 1649 (version "2.8.1")
9f9d887e
EF
1650 (source
1651 (origin
1652 (method git-fetch)
1653 (uri (git-reference
1654 (url "https://github.com/JuliaDiff/FiniteDiff.jl")
1655 (commit (string-append "v" version))))
1656 (file-name (git-file-name name version))
1657 (sha256
f7d79b96 1658 (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq"))))
9f9d887e
EF
1659 (build-system julia-build-system)
1660 (arguments
1661 `(#:phases
1662 (modify-phases %standard-phases
1663 (add-before 'check 'pre-check
1664 (lambda _
1665 ;; We don't want to run all the tests; the Downstream tests
1666 ;; try to download the package registry.
1667 (setenv "GROUP" "Core")
1668 #t)))))
1669 (propagated-inputs
1670 `(("julia-arrayinterface" ,julia-arrayinterface)
1671 ("julia-requires" ,julia-requires)
1672 ("julia-staticarrays" ,julia-staticarrays)))
1673 (native-inputs
1674 `(("julia-bandedmatrices" ,julia-bandedmatrices)
1675 ("julia-blockbandedmatrices" ,julia-blockbandedmatrices)
1676 ("julia-safetestsets" ,julia-safetestsets)))
1677 (home-page "https://github.com/JuliaDiff/FiniteDiff.jl")
1678 (synopsis "Calculations of gradients, Jacobians, and Hessians")
1679 (description "This package is for calculating derivatives, gradients,
1680Jacobians, Hessians, etc. numerically. This library is for maximizing speed
1681while giving a usable interface to end users in a way that specializes on array
1682types and sparsity.")
1683 (license license:expat)))
1684
f6c5a898 1685(define-public julia-finitedifferences
1686 (package
1687 (name "julia-finitedifferences")
071f0366 1688 (version "0.12.17")
f6c5a898 1689 (source
1690 (origin
1691 (method git-fetch)
1692 (uri (git-reference
1693 (url "https://github.com/JuliaDiff/FiniteDifferences.jl")
1694 (commit (string-append "v" version))))
1695 (file-name (git-file-name name version))
1696 (sha256
071f0366 1697 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c"))))
f6c5a898 1698 (build-system julia-build-system)
a31a4517 1699 (arguments
1700 `(#:phases
1701 ,@(if (target-x86-32?)
1702 '((modify-phases %standard-phases
1703 (add-after 'unpack 'remove-failing-test-i686
1704 (lambda _
1705 ;; Machine Precision incorrectly handled
1706 (substitute* "test/methods.jl"
1707 (("@test central_fdm\\(15, 5, adapt=2\\)\\(exp, 1.0\\)")
1708 "@test_broken central_fdm(15, 5, adapt=2)(exp, 1.0)"))))))
1709 '(%standard-phases))))
f6c5a898 1710 (inputs
1711 `(("julia-benchmarktools" ,julia-benchmarktools)))
1712 (propagated-inputs
1713 `(("julia-chainrulescore" ,julia-chainrulescore)
1714 ("julia-richardson" ,julia-richardson)
1715 ("julia-staticarrays" ,julia-staticarrays)))
1716 (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl")
1717 (synopsis "Estimates derivatives with finite differences")
1718 (description "This package calculates approximate derivatives numerically
1719using finite difference.")
1720 (license license:expat)))
1721
50f99cc5 1722(define-public julia-fixedpointnumbers
1723 (package
1724 (name "julia-fixedpointnumbers")
1725 (version "0.8.4")
1726 (source
1727 (origin
1728 (method git-fetch)
1729 (uri (git-reference
1730 (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
1731 (commit (string-append "v" version))))
1732 (file-name (git-file-name name version))
1733 (sha256
1734 (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
1735 (build-system julia-build-system)
1736 (arguments
1737 `(#:phases
1738 (modify-phases %standard-phases
3af351a7 1739 (add-after 'link-depot 'disable-failing-test
50f99cc5 1740 (lambda* (#:key outputs #:allow-other-keys)
1741 (substitute* "test/fixed.jl"
1742 ;; A deprecation warning is not thrown
1743 (("@test_logs.*:warn" all) (string-append "# " all)))
1744 #t)))))
1745 (propagated-inputs `(("julia-compat" ,julia-compat)))
1746 (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
1747 (synopsis "Fixed point types for Julia")
1748 (description "@code{FixedPointNumbers.jl} implements fixed-point number
1749types for Julia. A fixed-point number represents a fractional, or
1750non-integral, number. In contrast with the more widely known floating-point
1751numbers, with fixed-point numbers the decimal point doesn't \"float\":
1752fixed-point numbers are effectively integers that are interpreted as being
1753scaled by a constant factor. Consequently, they have a fixed number of
1754digits (bits) after the decimal (radix) point.")
1755 (license license:expat)))
d4987a50 1756
9bb2e649
EF
1757(define-public julia-formatting
1758 (package
1759 (name "julia-formatting")
1760 (version "0.4.2")
1761 (source
1762 (origin
1763 (method git-fetch)
1764 (uri (git-reference
1765 (url "https://github.com/JuliaIO/Formatting.jl")
1766 (commit (string-append "v" version))))
1767 (file-name (git-file-name name version))
1768 (sha256
1769 (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh"))))
1770 (build-system julia-build-system)
1771 (home-page "https://github.com/JuliaIO/Formatting.jl")
1772 (synopsis "Julia package to provide Python-like formatting support")
1773 (description "This package offers Python-style general formatting and
1774c-style numerical formatting.")
1775 (license license:expat)))
1776
57e034d5 1777(define-public julia-forwarddiff
1778 (package
1779 (name "julia-forwarddiff")
3beb0b80 1780 (version "0.10.18")
57e034d5 1781 (source
1782 (origin
1783 (method git-fetch)
1784 (uri (git-reference
1785 (url "https://github.com/JuliaDiff/ForwardDiff.jl")
1786 (commit (string-append "v" version))))
1787 (file-name (git-file-name name version))
1788 (sha256
3beb0b80 1789 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs"))))
57e034d5 1790 (build-system julia-build-system)
1791 (inputs ;required for tests
1792 `(("julia-calculus" ,julia-calculus)
1793 ("julia-difftests" ,julia-difftests)))
1794 (propagated-inputs
1795 `(("julia-commonsubexpressions" ,julia-commonsubexpressions)
1796 ("julia-diffresults" ,julia-diffresults)
1797 ("julia-diffrules" ,julia-diffrules)
1798 ("julia-nanmath" ,julia-nanmath)
1799 ("julia-specialfunctions" ,julia-specialfunctions)
1800 ("julia-staticarrays" ,julia-staticarrays)))
1801 (home-page "https://github.com/JuliaDiff/ForwardDiff.jl")
1802 (synopsis "Methods to take multidimensional derivatives")
1803 (description "This package implements methods to take derivatives,
1804gradients, Jacobians, Hessians, and higher-order derivatives of native Julia
1805functions (or any callable object, really) using forward mode automatic
1806differentiation (AD).")
1807 (license license:expat)))
cc7c1f90 1808
f9f98a2f
EF
1809(define-public julia-functionwrappers
1810 (package
1811 (name "julia-functionwrappers")
1812 (version "1.1.2")
1813 (source
1814 (origin
1815 (method git-fetch)
1816 (uri (git-reference
1817 (url "https://github.com/yuyichao/FunctionWrappers.jl")
1818 (commit (string-append "v" version))))
1819 (file-name (git-file-name name version))
1820 (sha256
1821 (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa"))))
1822 (build-system julia-build-system)
1823 (arguments
1824 `(#:phases
1825 (modify-phases %standard-phases
3af351a7 1826 (add-after 'link-depot 'adjust-tests
f9f98a2f
EF
1827 (lambda _
1828 (substitute* "test/runtests.jl"
1829 (("testset \\\"Abstract.*" all)
1830 (string-append all "return\n"))))))))
1831 (home-page "https://github.com/yuyichao/FunctionWrappers.jl")
1832 (synopsis "Type stable and efficient wrapper of arbitrary functions")
1833 (description "This package provides a type stable and efficient wrapper of
1834arbitrary functions.")
1835 (license license:expat)))
1836
4b7b94ca 1837(define-public julia-functors
1838 (package
1839 (name "julia-functors")
1840 (version "0.2.7")
1841 (source
1842 (origin
1843 (method git-fetch)
1844 (uri (git-reference
1845 (url "https://github.com/FluxML/Functors.jl")
1846 (commit (string-append "v" version))))
1847 (file-name (git-file-name name version))
1848 (sha256
1849 (base32 "03ry1wn1y2jssq65l29bi6q4ki041aa6gl1nd2w6cgl00k2mrxf3"))))
1850 (build-system julia-build-system)
1851 (home-page "https://fluxml.ai/Functors.jl/stable/")
1852 (synopsis "Design pattern for structures as in machine learning")
1853 (description "This package provides tools to express a design pattern for
1854dealing with large/ nested structures, as in machine learning and
1855optimisation. For large machine learning models it can be cumbersome or
1856inefficient to work with parameters as one big, flat vector, and structs help
1857in managing complexity; but it is also desirable to easily operate over all
1858parameters at once, e.g. for changing precision or applying an optimiser
1859update step.")
1860 (license license:expat)))
1861
ced47448
EF
1862(define-public julia-fuzzycompletions
1863 (package
1864 (name "julia-fuzzycompletions")
1865 (version "0.4.1")
1866 (source
1867 (origin
1868 (method git-fetch)
1869 (uri (git-reference
1870 (url "https://github.com/JunoLab/FuzzyCompletions.jl")
1871 (commit (string-append "v" version))))
1872 (file-name (git-file-name name version))
1873 (sha256
1874 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06"))))
1875 (build-system julia-build-system)
226af89e
EF
1876 (arguments
1877 `(#:phases
1878 (modify-phases %standard-phases
3af351a7 1879 (add-after 'link-depot 'skip-failing-test
226af89e
EF
1880 (lambda _
1881 (substitute* "test/runtests.jl"
1882 ((".*RPLE.*") "")))))))
ced47448
EF
1883 (home-page "https://github.com/JunoLab/FuzzyCompletions.jl")
1884 (synopsis "Fuzzy completion provider for Julia")
1885 (description
1886 "FuzzyCompletions provides fuzzy completions for a Julia runtime session.")
1887 (license license:expat)))
1888
2ea20cde
EF
1889(define-public julia-genericlinearalgebra
1890 (package
1891 (name "julia-genericlinearalgebra")
1892 (version "0.2.5")
1893 (source
1894 (origin
1895 (method git-fetch)
1896 (uri (git-reference
1897 (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1898 (commit (string-append "v" version))))
1899 (file-name (git-file-name name version))
1900 (sha256
1901 (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l"))))
1902 (build-system julia-build-system)
1903 (arguments
1904 `(#:phases
1905 (modify-phases %standard-phases
3af351a7 1906 (add-after 'link-depot 'adjust-test-suite
2ea20cde
EF
1907 (lambda _
1908 (substitute* "test/runtests.jl"
1909 ((".*lapack.*") "")))))))
1910 (native-inputs
1911 `(("julia-quaternions" ,julia-quaternions)))
1912 (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl")
1913 (synopsis "Generic numerical linear algebra")
1914 (description "The purpose of this package is partly to extend linear algebra
1915functionality in base to cover generic element types, e.g. @code{BigFloat} and
1916@code{Quaternion}, and partly to be a place to experiment with fast linear
1917algebra routines written in Julia (except for optimized BLAS).")
1918 (license license:expat)))
1919
ba637c5c
EF
1920(define-public julia-genericschur
1921 (package
1922 (name "julia-genericschur")
92929c22 1923 (version "0.5.1")
ba637c5c
EF
1924 (source
1925 (origin
1926 (method git-fetch)
1927 (uri (git-reference
1928 (url "https://github.com/RalphAS/GenericSchur.jl")
1929 (commit (string-append "v" version))))
1930 (file-name (git-file-name name version))
1931 (sha256
92929c22 1932 (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d"))))
ba637c5c
EF
1933 (build-system julia-build-system)
1934 (arguments
1935 `(#:phases
1936 (modify-phases %standard-phases
3af351a7 1937 (add-after 'link-depot 'adjust-test-suite
ba637c5c
EF
1938 (lambda _
1939 (substitute* "test/complex.jl"
1940 ;; expected Array{Int32,1}, got a value of type Array{Int64,1}
1941 (("A = _example") "#A = _example")
1942 (("schurtest\\(A,20\\)") ""))
1943 (substitute* "test/runtests.jl"
1944 ;; Test errors relating to liblapack.so
1945 ((".*complex\\.jl.*") "")
1946 ((".*real\\.jl.*") "")
1947 ;; GenericSVD is deprecated upstream
1948 ((".*gordschur\\.jl.*") "")))))))
1949 (home-page "https://github.com/RalphAS/GenericSchur.jl")
1950 (synopsis "Schur decomposition of matrices with generic element types")
1951 (description "The Schur decomposition is the workhorse for eigensystem
1952analysis of dense matrices. The diagonal eigen-decomposition of normal
1953(especially Hermitian) matrices is an important special case, but for non-normal
1954matrices the Schur form is often more useful.")
1955 (license license:expat)))
1956
caaf3a7b
EF
1957(define-public julia-geometrybasics
1958 (package
1959 (name "julia-geometrybasics")
1960 (version "0.4.1")
1961 (source
1962 (origin
1963 (method git-fetch)
1964 (uri (git-reference
1965 (url "https://github.com/JuliaGeometry/GeometryBasics.jl")
1966 (commit (string-append "v" version))))
1967 (file-name (git-file-name name version))
1968 (sha256
1969 (base32 "057j3hjpli3q5b98cqkpi4p10x2k9pyksrz62hjmv1kb5qzdvhsj"))))
1970 (build-system julia-build-system)
1971 (arguments
1972 `(#:phases
1973 (modify-phases %standard-phases
3af351a7 1974 (add-after 'link-depot 'remove-earcut
caaf3a7b
EF
1975 (lambda _
1976 (substitute* '("Project.toml"
1977 "src/GeometryBasics.jl")
1978 ((".*EarCut.*") ""))
1979 #t))
3af351a7 1980 (add-after 'link-depot 'skip-incompatible-test
caaf3a7b
EF
1981 (lambda _
1982 (substitute* "test/runtests.jl"
1983 (("@testset.*MetaT and heterogeneous data.*" all)
1984 (string-append all "return\n")))
1985 #t)))))
1986 (propagated-inputs
1987 `(("julia-itertools" ,julia-itertools)
1988 ("julia-staticarrays" ,julia-staticarrays)
1989 ("julia-structarrays" ,julia-structarrays)
1990 ("julia-tables" ,julia-tables)))
1991 (native-inputs
1992 `(("julia-offsetarrays" ,julia-offsetarrays)))
1993 (home-page "https://github.com/JuliaGeometry/GeometryBasics.jl")
1994 (synopsis "Basic Geometry Types")
1995 (description "This package aims to offer a standard set of Geometry types,
1996which easily work with metadata, query frameworks on geometries and different
1997memory layouts. The aim is to create a solid basis for Graphics/Plotting,
1998finite elements analysis, Geo applications, and general geometry manipulations
1999- while offering a Julian API, that still allows performant C-interop.")
2000 (license license:expat)))
2001
49996b27
EF
2002(define-public julia-gr
2003 (package
2004 (name "julia-gr")
2005 (version "0.58.1")
2006 (source
2007 (origin
2008 (method git-fetch)
2009 (uri (git-reference
2010 (url "https://github.com/jheinen/GR.jl")
2011 (commit (string-append "v" version))))
2012 (file-name (git-file-name name version))
2013 (sha256
2014 (base32 "18zxa1w2wmrf44c5l10qbh99zjdp7h94gxlymh47cf5kj5fc4xmx"))))
2015 (build-system julia-build-system)
2016 (propagated-inputs
2017 `(("julia-gr-jll" ,julia-gr-jll)))
2018 (home-page "https://github.com/jheinen/GR.jl")
2019 (synopsis "Plotting for Julia based on GR")
2020 (description "This module provides a Julia interface to GR, a framework for
2021visualisation applications.")
2022 (license license:expat)))
2023
2262f799
EF
2024(define-public julia-graphics
2025 (package
2026 (name "julia-graphics")
2027 (version "1.1.0")
2028 (source
2029 (origin
2030 (method git-fetch)
2031 (uri (git-reference
2032 (url "https://github.com/JuliaGraphics/Graphics.jl")
2033 (commit (string-append "v" version))))
2034 (file-name (git-file-name name version))
2035 (sha256
2036 (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn"))))
2037 (build-system julia-build-system)
2038 (propagated-inputs
2039 `(("julia-colors" ,julia-colors)
2040 ("julia-nanmath" ,julia-nanmath)))
2041 (home-page "https://github.com/JuliaGraphics/Graphics.jl")
2042 (synopsis "Base graphics in Julia")
2043 (description "@code{Graphics.jl} is an abstraction layer for graphical
2044operations in Julia.")
2045 (license license:expat)))
2046
cc7c1f90 2047(define-public julia-gumbo
2048 (package
2049 (name "julia-gumbo")
2050 (version "0.8.0")
2051 (source
2052 (origin
2053 (method git-fetch)
2054 (uri (git-reference
2055 (url "https://github.com/JuliaWeb/Gumbo.jl")
2056 (commit (string-append "v" version))))
2057 (file-name (git-file-name name version))
2058 (sha256
2059 (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm"))))
2060 (build-system julia-build-system)
2061 (propagated-inputs
2062 `(("julia-abstracttrees" ,julia-abstracttrees)
2063 ("julia-gumbo-jll" ,julia-gumbo-jll)))
2064 (home-page "https://github.com/JuliaWeb/Gumbo.jl")
2065 (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML")
2066 (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo
2067library for parsing HTML.")
2068 (license license:expat)))
57e034d5 2069
d4987a50 2070(define-public julia-http
2071 (package
2072 (name "julia-http")
a9292cee 2073 (version "0.9.12")
d4987a50 2074 (source
2075 (origin
2076 (method git-fetch)
2077 (uri (git-reference
2078 (url "https://github.com/JuliaWeb/HTTP.jl")
2079 (commit (string-append "v" version))))
2080 (file-name (git-file-name name version))
2081 (sha256
a9292cee 2082 (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk"))))
d4987a50 2083 (build-system julia-build-system)
2084 (arguments
2085 `(#:phases
2086 (modify-phases %standard-phases
2087 (add-before 'install 'disable-network-tests
2088 (lambda _
2089 (substitute* "test/runtests.jl"
2090 (("\"async.jl") "# \"async.jl")
2091 (("\"client.jl") "# \"client.jl"))
2092 (substitute* "test/aws4.jl"
2093 (("@testset.*HTTP.request with AWS authentication.*" all)
2094 (string-append all "return\n")))
2095 (substitute* "test/insert_layers.jl"
2096 (("@testset.*Inserted final layer runs handler.*" all)
2097 (string-append all "return\n")))
2098 (substitute* "test/multipart.jl"
2099 (("@testset \"Setting of Content-Type.*" all)
2100 (string-append all "return\n"))
2101 (("@testset \"Deprecation of .*" all)
2102 (string-append all "return\n")))
2103 (substitute* "test/websockets.jl"
2104 (("@testset.*External Host.*" all)
2105 (string-append all "return\n")))
2106 (substitute* "test/messages.jl"
2107 (("@testset.*Read methods.*" all)
2108 (string-append all "return\n"))
2109 (("@testset.*Body - .*" all)
2110 (string-append all "return\n"))
2111 (("@testset.*Write to file.*" all)
2112 (string-append all "return\n")))
2113 #t)))))
2114 (propagated-inputs
2115 `(("julia-inifile" ,julia-inifile)
2116 ("julia-mbedtls" ,julia-mbedtls)
2117 ("julia-uris" ,julia-uris)))
2118 ;; required for tests
2119 (inputs
2120 `(("julia-json" ,julia-json)
2121 ("julia-bufferedstreams" ,julia-bufferedstreams)))
2122 (home-page "https://juliaweb.github.io/HTTP.jl/")
2123 (synopsis "HTTP support for Julia")
2124 (description "@code{HTTP.jl} is a Julia library for HTTP Messages,
2125implementing both a client and a server.")
2126 (license license:expat)))
673bd9a7 2127
7cb023cc
EF
2128(define-public julia-identityranges
2129 (package
2130 (name "julia-identityranges")
2131 (version "0.3.1")
2132 (source
2133 (origin
2134 (method git-fetch)
2135 (uri (git-reference
2136 (url "https://github.com/JuliaArrays/IdentityRanges.jl")
2137 (commit (string-append "v" version))))
2138 (file-name (git-file-name name version))
2139 (sha256
2140 (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml"))))
2141 (build-system julia-build-system)
2142 (propagated-inputs
2143 `(("julia-offsetarrays" ,julia-offsetarrays)))
2144 (home-page "https://github.com/JuliaArrays/IdentityRanges.jl")
2145 (synopsis "Ranges that preserve indices of views")
2146 (description "@code{IdentityRanges} are Julia-language a helper type for
2147creating \"views\" of arrays. They are a custom type of AbstractUnitRange that
2148makes it easy to preserve the indices of array views. The key property of an
2149@code{IdentityRange r} is that @code{r[i] == i} (hence the name of the
2150type/package), and that they support arbitrary start/stop indices (i.e., not
2151just starting at 1).")
2152 (license license:expat)))
2153
673bd9a7
EF
2154(define-public julia-ifelse
2155 (package
2156 (name "julia-ifelse")
2157 (version "0.1.0")
2158 (source
2159 (origin
2160 (method git-fetch)
2161 (uri (git-reference
2162 (url "https://github.com/sciml/ifelse.jl")
2163 (commit (string-append "v" version))))
2164 (file-name (git-file-name name version))
2165 (sha256
2166 (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w"))))
2167 (build-system julia-build-system)
2168 (home-page "https://github.com/sciml/ifelse.jl")
2169 (synopsis "Function form of the if-else conditional statement")
2170 (description "This package provides a convenient function form of the
2171conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.")
2172 (license license:expat)))
50f99cc5 2173
57860112
EF
2174(define-public julia-imageaxes
2175 (package
2176 (name "julia-imageaxes")
2177 (version "0.6.9")
2178 (source
2179 (origin
2180 (method git-fetch)
2181 (uri (git-reference
2182 (url "https://github.com/JuliaImages/ImageAxes.jl")
2183 (commit (string-append "v" version))))
2184 (file-name (git-file-name name version))
2185 (sha256
2186 (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd"))))
2187 (build-system julia-build-system)
2188 (propagated-inputs
2189 `(("julia-axisarrays" ,julia-axisarrays)
2190 ("julia-imagecore" ,julia-imagecore)
2191 ("julia-reexport" ,julia-reexport)
2192 ("julia-simpletraits" ,julia-simpletraits)))
2193 (native-inputs
2194 `(("julia-unitful" ,julia-unitful)))
2195 (home-page "https://github.com/JuliaImages/ImageAxes.jl")
2196 (synopsis "Julia package for giving \"meaning\" to the axes of an image")
2197 (description "This small package supports the representation of images as
2198@code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with
2199such arrays easy via traits.")
2200 (license license:expat)))
2201
e43c498b
EF
2202(define-public julia-imagebase
2203 (package
2204 (name "julia-imagebase")
2205 (version "0.1.1")
2206 (source
2207 (origin
2208 (method git-fetch)
2209 (uri (git-reference
2210 (url "https://github.com/JuliaImages/ImageBase.jl")
2211 (commit (string-append "v" version))))
2212 (file-name (git-file-name name version))
2213 (sha256
2214 (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2"))))
2215 (build-system julia-build-system)
2216 (arguments
2217 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2218 (propagated-inputs
2219 `(("julia-imagecore" ,julia-imagecore)
2220 ("julia-reexport" ,julia-reexport)))
2221 ;(native-inputs
2222 ; `(("julia-imagemagick" ,julia-imagemagick)
2223 ; ("julia-offsetarrays" ,julia-offsetarrays)
2224 ; ("julia-testimages" ,julia-testimages)))
2225 (home-page "https://github.com/JuliaImages/ImageBase.jl")
2226 (synopsis "Wrapper package around ImageCore")
2227 (description "This is a twin package to @code{ImageCore} with functions that
2228are used among many of the packages in JuliaImages. The main purpose of this
2229package is to reduce unnecessary compilation overhead from external
2230dependencies.")
2231 (license license:expat)))
2232
87f27b0f
EF
2233(define-public julia-imagecore
2234 (package
2235 (name "julia-imagecore")
fa86b016 2236 (version "0.9.1")
87f27b0f
EF
2237 (source
2238 (origin
2239 (method git-fetch)
2240 (uri (git-reference
2241 (url "https://github.com/JuliaImages/ImageCore.jl")
2242 (commit (string-append "v" version))))
2243 (file-name (git-file-name name version))
2244 (sha256
fa86b016 2245 (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq"))))
87f27b0f
EF
2246 (build-system julia-build-system)
2247 (arguments
2248 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2249 (propagated-inputs
2250 `(("julia-abstractffts" ,julia-abstractffts)
2251 ("julia-colors" ,julia-colors)
2252 ("julia-colorvectorspace" ,julia-colorvectorspace)
2253 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2254 ("julia-graphics" ,julia-graphics)
2255 ("julia-mappedarrays" ,julia-mappedarrays)
2256 ("julia-mosaicviews" ,julia-mosaicviews)
2257 ("julia-offsetarrays" ,julia-offsetarrays)
2258 ("julia-paddedviews" ,julia-paddedviews)
2259 ("julia-reexport" ,julia-reexport)))
2260 ;(native-inputs
2261 ; `(("julia-aqua" ,julia-aqua)
2262 ; ("julia-colorvectorspace" ,julia-colorvectorspace)
2263 ; ("julia-documenter" ,julia-documenter)
2264 ; ("julia-fftw" ,julia-fftw)
2265 ; ("julia-imageinterminal" ,julia-imageinterminal)
2266 ; ("julia-imagemagick" ,julia-imagemagick)
2267 ; ("julia-referencetests" ,julia-referencetests)
2268 ; ("julia-statistics" ,julia-statistics)))
2269 (home-page "https://github.com/JuliaImages/ImageCore.jl")
2270 (synopsis "Julia types for representing images")
2271 (description "@code{ImageCore} is the lowest-level component of the system
2272of packages designed to support image processing and computer vision.")
2273 (license license:expat)))
2274
6669b005
EF
2275(define-public julia-imageinterminal
2276 (package
2277 (name "julia-imageinterminal")
6752fc15 2278 (version "0.4.7")
6669b005
EF
2279 (source
2280 (origin
2281 (method git-fetch)
2282 (uri (git-reference
2283 (url "https://github.com/JuliaImages/ImageInTerminal.jl")
2284 (commit (string-append "v" version))))
2285 (file-name (git-file-name name version))
2286 (sha256
6752fc15 2287 (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl"))))
6669b005
EF
2288 (build-system julia-build-system)
2289 (arguments
2290 `(#:tests? #f)) ; Cycle with ReferenceTests.jl.
2291 (propagated-inputs
2292 `(("julia-crayons" ,julia-crayons)
6752fc15 2293 ("julia-imagebase" ,julia-imagebase)
6669b005 2294 ("julia-imagecore" ,julia-imagecore)
6752fc15 2295 ("julia-requires" ,julia-requires)))
6669b005
EF
2296 ;(native-inputs
2297 ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations)
2298 ; ("julia-imagemagick" ,julia-imagemagick)
6752fc15 2299 ; ("julia-imagetransformations" ,julia-imagetransformations)
6669b005
EF
2300 ; ("julia-offsetarrays" ,julia-offsetarrays)
2301 ; ("julia-referencetests" ,julia-referencetests)
2302 ; ("julia-rotations" ,julia-rotations)
2303 ; ("julia-sparsearrays" ,julia-sparsearrays)
2304 ; ("julia-testimages" ,julia-testimages)))
2305 (home-page "https://github.com/JuliaImages/ImageInTerminal.jl")
2306 (synopsis "Julia package for displaying images in the terminal")
2307 (description "@code{ImageInTerminal.jl} is a drop-in package that once
2308imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays
2309(i.e. Images) are displayed in the interactive REPL. The displayed images will
2310be downscaled to fit into the size of your active terminal session.")
2311 (license license:expat)))
2312
0ffa2521
EF
2313(define-public julia-imagemagick
2314 (package
2315 (name "julia-imagemagick")
2316 (version "1.2.1")
2317 (source
2318 (origin
2319 (method git-fetch)
2320 (uri (git-reference
2321 (url "https://github.com/JuliaIO/ImageMagick.jl")
2322 (commit (string-append "v" version))))
2323 (file-name (git-file-name name version))
2324 (sha256
2325 (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p"))))
2326 (build-system julia-build-system)
2327 (arguments
2328 `(#:phases
2329 (modify-phases %standard-phases
3af351a7 2330 (add-after 'link-depot 'skip-failing-test
0ffa2521
EF
2331 (lambda _
2332 ;; These tests try to download from the imagemagick.org
2333 (substitute* "test/runtests.jl"
2334 ((".*readremote\\.jl.*") ""))
2335 ;; Tests with the color gray are hard.
2336 (substitute* "test/constructed_images.jl"
2337 (("test (b == aa)" _ test) (string-append "test_nowarn " test))
2338 (("test (B == map)" _ test) (string-append "test_nowarn " test)))
2339 #t)))))
2340 (propagated-inputs
2341 `(("julia-fileio" ,julia-fileio)
2342 ("julia-imagecore" ,julia-imagecore)
2343 ("julia-imagemagick-jll" ,julia-imagemagick-jll)))
2344 (native-inputs
2345 `(("julia-colors" ,julia-colors)
2346 ("julia-colorvectorspace" ,julia-colorvectorspace)
2347 ("julia-imagemetadata" ,julia-imagemetadata)
2348 ("julia-imageshow" ,julia-imageshow)
2349 ("julia-imagetransformations" ,julia-imagetransformations)
2350 ("julia-indirectarrays" ,julia-indirectarrays)
2351 ("julia-offsetarrays" ,julia-offsetarrays)
2352 ("julia-zipfile" ,julia-zipfile)))
2353 (home-page "https://github.com/JuliaIO/ImageMagick.jl")
2354 (synopsis "Thin wrapper for ImageMagick")
2355 (description "This package provides a wrapper around ImageMagick version 6.
2356It was split off from @code{Images.jl} to make image I/O more modular.")
2357 (license license:expat)))
2358
6eb1b1d8
EF
2359(define-public julia-imagemetadata
2360 (package
2361 (name "julia-imagemetadata")
2362 (version "0.9.6")
2363 (source
2364 (origin
2365 (method git-fetch)
2366 (uri (git-reference
2367 (url "https://github.com/JuliaImages/ImageMetadata.jl")
2368 (commit (string-append "v" version))))
2369 (file-name (git-file-name name version))
2370 (sha256
2371 (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1"))))
2372 (build-system julia-build-system)
2373 (propagated-inputs
2374 `(("julia-axisarrays" ,julia-axisarrays)
2375 ("julia-imageaxes" ,julia-imageaxes)
2376 ("julia-imagecore" ,julia-imagecore)
2377 ("julia-indirectarrays" ,julia-indirectarrays)))
2378 (native-inputs
2379 `(("julia-offsetarrays" ,julia-offsetarrays)
2380 ("julia-simpletraits" ,julia-simpletraits)
2381 ("julia-unitful" ,julia-unitful)))
2382 (home-page "https://github.com/JuliaImages/ImageMetadata.jl")
2383 (synopsis "Julia package for images having metadata")
2384 (description "@code{ImageMetadata} is a simple package providing utilities
2385for working with images that have metadata attached. For example, you might
2386want to associate an image with the date on which the picture was taken, or an
2387MRI scan with patient data, or an astronomical image with sky coordinates and
2388information about the detector used to acquire the image.")
2389 (license license:expat)))
2390
f5de098c
EF
2391(define-public julia-imageshow
2392 (package
2393 (name "julia-imageshow")
2394 (version "0.3.2")
2395 (source
2396 (origin
2397 (method git-fetch)
2398 (uri (git-reference
2399 (url "https://github.com/JuliaImages/ImageShow.jl")
2400 (commit (string-append "v" version))))
2401 (file-name (git-file-name name version))
2402 (sha256
2403 (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh"))))
2404 (build-system julia-build-system)
2405 (arguments
2406 `(#:tests? #f)) ; cycle with ImageMagick.jl.
2407 (propagated-inputs
2408 `(("julia-fileio" ,julia-fileio)
2409 ("julia-imagebase" ,julia-imagebase)
2410 ("julia-imagecore" ,julia-imagecore)
2411 ("julia-offsetarrays" ,julia-offsetarrays)
2412 ("julia-stackviews" ,julia-stackviews)))
2413 ;(native-inputs
2414 ; `(("julia-imagedistances" ,julia-imagedistances)
2415 ; ("julia-imagemagick" ,julia-imagemagick)
2416 ; ("julia-suppressor" ,julia-suppressor)
2417 ; ("julia-testimages" ,julia-testimages)))
2418 (home-page "https://github.com/JuliaImages/ImageShow.jl")
2419 (synopsis
2420 "Inline graphical display of images in Julia graphical environments")
2421 (description "This package implements image @code{show} methods suitable
2422for graphical platforms such as IJulia. It is intended to provide convenient
2423inline presentation of greyscale or color images.")
2424 (license license:expat)))
2425
f4e3a504
EF
2426(define-public julia-imagetransformations
2427 (package
2428 (name "julia-imagetransformations")
2429 (version "0.8.12")
2430 (source
2431 (origin
2432 (method git-fetch)
2433 (uri (git-reference
2434 (url "https://github.com/JuliaImages/ImageTransformations.jl")
2435 (commit (string-append "v" version))))
2436 (file-name (git-file-name name version))
2437 (sha256
2438 (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm"))))
2439 (build-system julia-build-system)
2440 (arguments
2441 `(#:tests? #f)) ; Cycle with ImageMagick.jl.
2442 (propagated-inputs
2443 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2444 ("julia-colorvectorspace" ,julia-colorvectorspace)
2445 ("julia-coordinatetransformations" ,julia-coordinatetransformations)
2446 ("julia-identityranges" ,julia-identityranges)
2447 ("julia-imagecore" ,julia-imagecore)
2448 ("julia-interpolations" ,julia-interpolations)
2449 ("julia-offsetarrays" ,julia-offsetarrays)
2450 ("julia-rotations" ,julia-rotations)
2451 ("julia-staticarrays" ,julia-staticarrays)))
2452 ;(native-inputs
2453 ; `(("julia-imagemagick" ,julia-imagemagick)
2454 ; ("julia-referencetests" ,julia-referencetests)
2455 ; ("julia-testimages" ,julia-testimages)))
2456 (home-page "https://github.com/JuliaImages/ImageTransformations.jl")
2457 (synopsis "Geometric transformations on images for Julia")
2458 (description "This package provides support for image resizing, image
2459rotation, and other spatial transformations of arrays.")
2460 (license license:expat)))
2461
d54d21d0
EF
2462(define-public julia-indexing
2463 (package
2464 (name "julia-indexing")
2465 (version "1.1.1")
2466 (source
2467 (origin
2468 (method git-fetch)
2469 (uri (git-reference
2470 (url "https://github.com/andyferris/Indexing.jl")
2471 (commit (string-append "v" version))))
2472 (file-name (git-file-name name version))
2473 (sha256
2474 (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx"))))
2475 (build-system julia-build-system)
2476 (home-page "https://github.com/andyferris/Indexing.jl")
2477 (synopsis "Generalized indexing for Julia")
2478 (description "This package defines functions for getting multiple indices
2479out of dictionaries, tuples, etc, extending this ability beyond
2480@code{AbstractArray}.")
2481 (license license:expat)))
2482
4541cda7
EF
2483(define-public julia-indirectarrays
2484 (package
2485 (name "julia-indirectarrays")
2486 (version "0.5.1")
2487 (source
2488 (origin
2489 (method git-fetch)
2490 (uri (git-reference
2491 (url "https://github.com/JuliaArrays/IndirectArrays.jl")
2492 (commit (string-append "v" version))))
2493 (file-name (git-file-name name version))
2494 (sha256
2495 (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s"))))
2496 (build-system julia-build-system)
2497 (native-inputs
2498 `(("julia-colors" ,julia-colors)
2499 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2500 ("julia-mappedarrays" ,julia-mappedarrays)))
2501 (home-page "https://github.com/JuliaArrays/IndirectArrays.jl")
2502 (synopsis "Julia implementation of indexed arrays")
2503 (description "An @code{IndirectArray} is one that encodes data using a
2504combination of an @code{index} and a @code{value} table. Each element is
2505assigned its own index, which is used to retrieve the value from the
2506@code{value} table. Among other uses, @code{IndirectArrays} can represent
2507indexed images, sometimes called \"colormap images\" or \"paletted images.\"")
2508 (license license:expat)))
2509
9c3b2cf0
EF
2510(define-public julia-infinity
2511 (package
2512 (name "julia-infinity")
2513 (version "0.2.4")
2514 (source
2515 (origin
2516 (method git-fetch)
2517 (uri (git-reference
2518 (url "https://github.com/cjdoris/Infinity.jl")
2519 (commit (string-append "v" version))))
2520 (file-name (git-file-name name version))
2521 (sha256
2522 (base32 "1941lwvrdjnrynigzixxin3chpg1ba6xplvcwc89x0f6z658hwmm"))))
2523 (build-system julia-build-system)
2524 (arguments
2525 `(#:phases
2526 (modify-phases %standard-phases
3af351a7 2527 (add-after 'link-depot 'remove-timezones.jl
9c3b2cf0
EF
2528 (lambda _
2529 (substitute* "test/runtests.jl"
2530 (("using TimeZones.*") "")
2531 ((".*infextendedtime.*") ""))
2532 #t)))))
2533 (propagated-inputs
2534 `(("julia-requires" ,julia-requires)))
2535 (native-inputs
2536 `(("julia-compat" ,julia-compat)))
2537 (home-page "https://docs.juliahub.com/Infinity/")
2538 (synopsis "Representation of infinity in Julia")
2539 (description "This package provides representations for infinity and
2540negative infinity in Julia.")
2541 (license license:expat)))
2542
fc781578 2543(define-public julia-inifile
2544 (package
2545 (name "julia-inifile")
2546 (version "0.5.0")
2547 (source
2548 (origin
2549 (method git-fetch)
2550 (uri (git-reference
2551 (url "https://github.com/JuliaIO/IniFile.jl")
2552 (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0")))
2553 (file-name (git-file-name name version))
2554 (sha256
2555 (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd"))))
2556 (build-system julia-build-system)
2557 (home-page "https://github.com/JuliaIO/IniFile.jl")
2558 (synopsis "Reading Windows-style INI files")
2559 (description "This is a Julia package that defines an IniFile type that
969b80ef 2560interfaces with @file{.ini} files.")
fc781578 2561 (license license:expat)))
2562
fcc15a4a
EF
2563(define-public julia-interpolations
2564 (package
2565 (name "julia-interpolations")
bfd92c35 2566 (version "0.13.3")
fcc15a4a
EF
2567 (source
2568 (origin
2569 (method git-fetch)
2570 (uri (git-reference
2571 (url "https://github.com/JuliaMath/Interpolations.jl")
2572 (commit (string-append "v" version))))
2573 (file-name (git-file-name name version))
2574 (sha256
bfd92c35 2575 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc"))))
fcc15a4a 2576 (build-system julia-build-system)
dfad64e7 2577 (arguments
2578 `(#:parallel-tests? #f))
fcc15a4a
EF
2579 (propagated-inputs
2580 `(("julia-axisalgorithms" ,julia-axisalgorithms)
2581 ("julia-offsetarrays" ,julia-offsetarrays)
2582 ("julia-ratios" ,julia-ratios)
bfd92c35 2583 ("julia-requires" ,julia-requires)
fcc15a4a
EF
2584 ("julia-staticarrays" ,julia-staticarrays)
2585 ("julia-woodburymatrices" ,julia-woodburymatrices)))
2586 (native-inputs
2587 `(("julia-dualnumbers" ,julia-dualnumbers)
2588 ("julia-forwarddiff" ,julia-forwarddiff)
2589 ("julia-offsetarrays" ,julia-offsetarrays)
bfd92c35
EF
2590 ("julia-unitful" ,julia-unitful)
2591 ("julia-zygote" ,julia-zygote)))
fcc15a4a
EF
2592 (home-page "https://github.com/JuliaMath/Interpolations.jl")
2593 (synopsis "Continuous interpolation of discrete datasets")
2594 (description "This package implements a variety of interpolation schemes for
2595the Julia language. It has the goals of ease-of-use, broad algorithmic support,
2596and exceptional performance.")
2597 (license license:expat)))
2598
736eecd5
EF
2599(define-public julia-intervalsets
2600 (package
2601 (name "julia-intervalsets")
2602 (version "0.5.3")
2603 (source
2604 (origin
2605 (method git-fetch)
2606 (uri (git-reference
2607 (url "https://github.com/JuliaMath/IntervalSets.jl")
2608 (commit (string-append "v" version))))
2609 (file-name (git-file-name name version))
2610 (sha256
2611 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag"))))
2612 (build-system julia-build-system)
2613 (propagated-inputs
2614 `(("julia-ellipsisnotation" ,julia-ellipsisnotation)))
2615 (native-inputs
2616 `(("julia-offsetarrays" ,julia-offsetarrays)))
2617 (home-page "https://github.com/JuliaMath/IntervalSets.jl")
2618 (synopsis "Interval Sets for Julia")
2619 (description "This package is intended to implement a \"minimal\" foundation
2620for intervals upon which other packages might build. In particular, we
2621encourage type-piracy for the reason that only one interval package can
2622unambiguously define the @code{..} and @code{±} operators.")
2623 (license license:expat)))
2624
114db2b9
EF
2625(define-public julia-invertedindices
2626 (package
2627 (name "julia-invertedindices")
2628 (version "1.0.0")
2629 (source
2630 (origin
2631 (method git-fetch)
2632 (uri (git-reference
2633 (url "https://github.com/mbauman/InvertedIndices.jl")
2634 (commit (string-append "v" version))))
2635 (file-name (git-file-name name version))
2636 (sha256
2637 (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46"))))
2638 (build-system julia-build-system)
2639 (native-inputs
2640 `(("julia-offsetarrays" ,julia-offsetarrays)))
2641 (home-page "https://github.com/mbauman/InvertedIndices.jl")
2642 (synopsis "Index type that allows for inverted selections")
2643 (description "This package just exports one type: the @code{InvertedIndex},
2644or @code{Not} for short. It can wrap any supported index type and may be used
2645as an index into any @code{AbstractArray} subtype, including OffsetArrays.")
2646 (license license:expat)))
2647
fcc93efc
EF
2648(define-public julia-iocapture
2649 (package
2650 (name "julia-iocapture")
3e6ee9ee 2651 (version "0.2.2")
fcc93efc
EF
2652 (source
2653 (origin
2654 (method git-fetch)
2655 (uri (git-reference
2656 (url "https://github.com/JuliaDocs/IOCapture.jl")
2657 (commit (string-append "v" version))))
2658 (file-name (git-file-name name version))
2659 (sha256
3e6ee9ee 2660 (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb"))))
fcc93efc
EF
2661 (build-system julia-build-system)
2662 (home-page "https://github.com/JuliaDocs/IOCapture.jl")
2663 (synopsis "Capture standard output and error streams")
2664 (description "This package provides the @code{IOCapture.capture(f)}
2665function, which captures the standard output and standard error, and returns it
2666as a string together with the return value.")
2667 (license license:expat)))
2668
57653707 2669(define-public julia-irtools
2670 (package
2671 (name "julia-irtools")
4a69ab16 2672 (version "0.4.3")
57653707 2673 (source
2674 (origin
2675 (method git-fetch)
2676 (uri (git-reference
2677 (url "https://github.com/FluxML/IRTools.jl")
2678 (commit (string-append "v" version))))
2679 (file-name (git-file-name name version))
2680 (sha256
4a69ab16 2681 (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql"))))
57653707 2682 (build-system julia-build-system)
2683 (propagated-inputs
2684 `(("julia-macrotools" ,julia-macrotools)))
d36a4127 2685 (native-inputs
2686 `(("julia-documenter" ,julia-documenter)))
57653707 2687 (home-page "https://github.com/FluxML/IRTools.jl")
2688 (synopsis "Simple and flexible IR format")
2689 (description "This package provides a simple and flexible IR format,
2690expressive enough to work with both lowered and typed Julia code, as well as
2691external IRs. It can be used with Julia metaprogramming tools such as
2692Cassette.")
2693 (license license:expat)))
2694
43f26eae
EF
2695(define-public julia-iteratorinterfaceextensions
2696 (package
2697 (name "julia-iteratorinterfaceextensions")
2698 (version "1.0.0")
2699 (source
2700 (origin
2701 (method git-fetch)
2702 (uri (git-reference
2703 (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2704 (commit (string-append "v" version))))
2705 (file-name (git-file-name name version))
2706 (sha256
2707 (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09"))))
2708 (build-system julia-build-system)
2709 (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl")
2710 (synopsis "Traits for Julia iterators")
2711 (description "IteratorInterfaceExtensions defines a small number of
2712extensions to the iterator interface.")
2713 (license license:expat)))
2714
503c2039
EF
2715(define-public julia-itertools
2716 (package
2717 (name "julia-itertools")
2718 (version "1.3.0")
2719 (source
2720 (origin
2721 (method git-fetch)
2722 (uri (git-reference
2723 (url "https://github.com/JuliaCollections/IterTools.jl")
2724 (commit (string-append "v" version))))
2725 (file-name (git-file-name name version))
2726 (sha256
2727 (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq"))))
2728 (build-system julia-build-system)
2729 (home-page "https://github.com/JuliaCollections/IterTools.jl")
2730 (synopsis "Common functional iterator patterns")
2731 (description
2732 "Common functional iterator patterns (formerly @code{Iterators.jl}).")
2733 (license license:expat)))
2734
dae521a0 2735(define-public julia-json
2736 (package
2737 (name "julia-json")
2738 (version "0.21.1")
2739 (source
2740 (origin
2741 (method git-fetch)
2742 (uri (git-reference
2743 (url "https://github.com/JuliaIO/JSON.jl")
2744 (commit (string-append "v" version))))
2745 (file-name (git-file-name name version))
2746 (sha256
2747 (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
2748 (build-system julia-build-system)
2749 (propagated-inputs
2750 `(("julia-datastructures" ,julia-datastructures)
2751 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2752 ("julia-parsers" ,julia-parsers)
2753 ("julia-offsetarrays" ,julia-offsetarrays)))
2754 (home-page "https://github.com/JuliaIO/JSON.jl")
2755 (synopsis "JSON parsing and printing library for Julia")
2756 (description "@code{JSON.jl} is a pure Julia module which supports parsing
2757and printing JSON documents.")
2758 (license license:expat)))
2759
a5daa8c0
EF
2760(define-public julia-json3
2761 (package
2762 (name "julia-json3")
6087d0db 2763 (version "1.9.0")
a5daa8c0
EF
2764 (source
2765 (origin
2766 (method git-fetch)
2767 (uri (git-reference
2768 (url "https://github.com/quinnj/JSON3.jl")
2769 (commit (string-append "v" version))))
2770 (file-name (git-file-name name version))
2771 (sha256
6087d0db 2772 (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17"))))
a5daa8c0
EF
2773 (build-system julia-build-system)
2774 (propagated-inputs
2775 `(("julia-parsers" ,julia-parsers)
2776 ("julia-structtypes" ,julia-structtypes)))
2777 (home-page "https://github.com/quinnj/JSON3.jl")
2778 (synopsis "JSON package for Julia")
2779 (description "This package provides another JSON package for Julia, with a
2780focus on speed and slick struct mapping.")
2781 (license license:expat)))
2782
0d888667
EF
2783(define-public julia-latexstrings
2784 (package
2785 (name "julia-latexstrings")
2786 (version "1.2.1")
2787 (source
2788 (origin
2789 (method git-fetch)
2790 (uri (git-reference
2791 (url "https://github.com/stevengj/LaTeXStrings.jl")
2792 (commit (string-append "v" version))))
2793 (file-name (git-file-name name version))
2794 (sha256
2795 (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp"))))
2796 (build-system julia-build-system)
2797 (native-inputs
2798 `(("julia-documenter" ,julia-documenter)))
2799 (home-page "https://github.com/stevengj/LaTeXStrings.jl")
2800 (synopsis "Input and display of LaTeX equation strings")
2801 (description "This is a small package to make it easier to type LaTeX
2802equations in string literals in the Julia language.")
2803 (license license:expat)))
2804
2cd0dcf3
EF
2805(define-public julia-lazyarrays
2806 (package
2807 (name "julia-lazyarrays")
3c6ff2b9 2808 (version "0.22.2")
2cd0dcf3
EF
2809 (source
2810 (origin
2811 (method git-fetch)
2812 (uri (git-reference
2813 (url "https://github.com/JuliaArrays/LazyArrays.jl")
2814 (commit (string-append "v" version))))
2815 (file-name (git-file-name name version))
2816 (sha256
3c6ff2b9 2817 (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5"))))
2cd0dcf3 2818 (build-system julia-build-system)
557caa4e 2819 (arguments
2820 `(#:phases
2821 ,@(if (target-64bit?)
2822 '(%standard-phases)
2823 '((modify-phases %standard-phases
2824 (add-after 'unpack 'fix-tests-int32-i686
2825 (lambda _
2826 (substitute* "test/multests.jl"
2827 (("Int64") "Int32")))))))))
2cd0dcf3
EF
2828 (propagated-inputs
2829 `(("julia-arraylayouts" ,julia-arraylayouts)
2830 ("julia-fillarrays" ,julia-fillarrays)
2831 ("julia-macrotools" ,julia-macrotools)
2832 ("julia-matrixfactorizations" ,julia-matrixfactorizations)
2833 ("julia-staticarrays" ,julia-staticarrays)))
2834 (native-inputs
2835 `(("julia-tracker" ,julia-tracker)))
2836 (home-page "https://github.com/JuliaArrays/LazyArrays.jl")
2837 (synopsis "Lazy arrays and linear algebra")
2838 (description "This package supports lazy analogues of array operations like
2839@code{vcat}, @code{hcat}, and multiplication. This helps with the
2840implementation of matrix-free methods for iterative solvers.")
2841 (license license:expat)))
2842
8735dc17
EF
2843(define-public julia-logexpfunctions
2844 (package
2845 (name "julia-logexpfunctions")
2846 (version "0.2.4")
2847 (source
2848 (origin
2849 (method git-fetch)
2850 (uri (git-reference
2851 (url "https://github.com/JuliaStats/LogExpFunctions.jl")
2852 (commit (string-append "v" version))))
2853 (file-name (git-file-name name version))
2854 (sha256
2855 (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n"))))
2856 (build-system julia-build-system)
2857 (propagated-inputs
2858 `(("julia-docstringextensions" ,julia-docstringextensions)))
2859 (native-inputs
2860 `(("julia-offsetarrays" ,julia-offsetarrays)))
2861 (home-page "https://github.com/JuliaStats/LogExpFunctions.jl")
2862 (synopsis "Special functions based on @code{log} and @code{exp}")
2863 (description "Various special functions based on log and exp moved from
2864@code{StatsFuns.jl} into a separate package, to minimize dependencies. These
2865functions only use native Julia code, so there is no need to depend on
2866@code{librmath} or similar libraries.")
2867 (license license:expat)))
2868
45debc7b 2869(define-public julia-macrotools
2870 (package
2871 (name "julia-macrotools")
2872 (version "0.5.6")
2873 (source
2874 (origin
2875 (method git-fetch)
2876 (uri (git-reference
2877 (url "https://github.com/FluxML/MacroTools.jl")
2878 (commit (string-append "v" version))))
2879 (file-name (git-file-name name version))
2880 (sha256
2881 (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f"))))
2882 (build-system julia-build-system)
2883 (home-page "https://fluxml.ai/MacroTools.jl")
2884 (synopsis "Tools for working with Julia code and expressions")
2885 (description "This library provides tools for working with Julia code and
2886expressions. This includes a template-matching system and code-walking tools
2887that let you do deep transformations of code.")
2888 (license license:expat)))
2889
ea03851b
EF
2890(define-public julia-mappedarrays
2891 (package
2892 (name "julia-mappedarrays")
2893 (version "0.4.0")
2894 (source
2895 (origin
2896 (method git-fetch)
2897 (uri (git-reference
2898 (url "https://github.com/JuliaArrays/MappedArrays.jl")
2899 (commit (string-append "v" version))))
2900 (file-name (git-file-name name version))
2901 (sha256
2902 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3"))))
2903 (build-system julia-build-system)
2904 (propagated-inputs
2905 `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers)))
2906 (native-inputs
2907 `(("julia-colortypes" ,julia-colortypes)
2908 ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
2909 ("julia-offsetarrays" ,julia-offsetarrays)))
2910 (home-page "https://github.com/JuliaArrays/MappedArrays.jl")
2911 (synopsis "Lazy in-place transformations of arrays")
2912 (description "This package implements \"lazy\" in-place elementwise
2913transformations of arrays for the Julia programming language. Explicitly, it
2914provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a
2915specified (but arbitrary) function f, without ever having to compute M
2916explicitly (in the sense of allocating storage for M). The name of the package
2917comes from the fact that @code{M == map(f, A)}.")
2918 (license license:expat)))
2919
fa945a54
EF
2920(define-public julia-matrixfactorizations
2921 (package
2922 (name "julia-matrixfactorizations")
3127f373 2923 (version "0.8.4")
fa945a54
EF
2924 (source
2925 (origin
2926 (method git-fetch)
2927 (uri (git-reference
2928 (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2929 (commit (string-append "v" version))))
2930 (file-name (git-file-name name version))
2931 (sha256
3127f373 2932 (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb"))))
fa945a54
EF
2933 (build-system julia-build-system)
2934 (arguments
2935 `(#:phases
2936 (modify-phases %standard-phases
3af351a7 2937 (add-after 'link-depot 'skip-failing-test
fa945a54
EF
2938 (lambda _
2939 ;; Tests with math functions are hard.
2940 (substitute* "test/test_ul.jl"
2941 (("@test @inferred\\(logdet") "@test @test_nowarn(logdet")
2942 ;; Also skip the REPL test.
2943 (("test String") "test_nowarn String"))
2944 #t)))))
2945 (propagated-inputs
2946 `(("julia-arraylayouts" ,julia-arraylayouts)))
2947 (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl")
2948 (synopsis "Julia package to contain non-standard matrix factorizations")
2949 (description "A Julia package to contain non-standard matrix factorizations.
2950At the moment it implements the QL, RQ, and UL factorizations, a combined
2951Cholesky factorization with inverse, and polar decompositions. In the future it
2952may include other factorizations such as the LQ factorization.")
2953 (license license:expat)))
2954
a72d3ca8 2955(define-public julia-mbedtls
2956 (package
2957 (name "julia-mbedtls")
2958 (version "1.0.3")
2959 (source
2960 (origin
2961 (method git-fetch)
2962 (uri (git-reference
2963 (url "https://github.com/JuliaLang/MbedTLS.jl")
2964 (commit (string-append "v" version))))
2965 (file-name (git-file-name name version))
2966 (sha256
2967 (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb"))))
2968 (build-system julia-build-system)
2969 (arguments
2970 `(#:phases
2971 (modify-phases %standard-phases
2972 (add-before 'install 'disable-network-tests
2973 ;; Tries to connect to httpbin.org
2974 (lambda _
2975 (substitute* "test/runtests.jl"
2976 (("testhost =") "return #"))
2977 #t)))))
2978 (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll)))
2979 (home-page "https://github.com/JuliaLang/MbedTLS.jl")
2980 (synopsis "Apache's mbed TLS library wrapper")
2981 (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed
9a2d7e0f 2982TLS} and cryptography C library for Julia.")
a72d3ca8 2983 (license license:expat)))
2984
55e1fa89
EF
2985(define-public julia-measurements
2986 (package
2987 (name "julia-measurements")
2988 (version "2.6.0")
2989 (source
2990 (origin
2991 (method git-fetch)
2992 (uri (git-reference
2993 (url "https://github.com/JuliaPhysics/Measurements.jl")
2994 (commit (string-append "v" version))))
2995 (file-name (git-file-name name version))
2996 (sha256
2997 (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
2998 (build-system julia-build-system)
2999 (propagated-inputs
3000 `(("julia-calculus" ,julia-calculus)
3001 ("julia-recipesbase" ,julia-recipesbase)
3002 ("julia-requires" ,julia-requires)))
3003 (native-inputs
3004 `(("julia-quadgk" ,julia-quadgk)
3005 ("julia-specialfunctions" ,julia-specialfunctions)
3006 ("julia-unitful" ,julia-unitful)))
3007 (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
3008 (synopsis "Error propagation calculator and library")
3009 (description "@code{Measurements.jl} is an error propagation calculator and
3010library for physical measurements. It supports real and complex numbers with
3011uncertainty, arbitrary precision calculations, operations with arrays, and
3012numerical integration. The linear error propagation theory is employed to
3013propagate the errors.")
3014 (license license:expat)))
3015
9d6bf9a2
EF
3016(define-public julia-measures
3017 (package
3018 (name "julia-measures")
3019 (version "0.3.1")
3020 (source
3021 (origin
3022 (method git-fetch)
3023 (uri (git-reference
3024 (url "https://github.com/JuliaGraphics/Measures.jl")
3025 (commit (string-append "v" version))))
3026 (file-name (git-file-name name version))
3027 (sha256
3028 (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l"))))
3029 (build-system julia-build-system)
3030 (home-page "https://github.com/JuliaGraphics/Measures.jl")
3031 (synopsis "Unified measure and coordinates types")
3032 (description "This library generalizes and unifies the notion of measures
3033used in Compose, Compose3D, and Escher. It allows building up and representing
3034expressions involving differing types of units that are then evaluated,
3035resolving them into absolute units.")
3036 (license license:expat)))
3037
14f8d587 3038(define-public julia-media
3039 (package
3040 (name "julia-media")
3041 (version "0.5.0")
3042 (source
3043 (origin
3044 (method git-fetch)
3045 (uri (git-reference
3046 (url "https://github.com/JunoLab/Media.jl")
3047 (commit (string-append "v" version))))
3048 (file-name (git-file-name name version))
3049 (sha256
3050 (base32 "05jq9j3vs8yfj2lwz3sh1vk5rha06xdcikp9s2q3dn316vryy6di"))))
3051 (build-system julia-build-system)
3052 ;; Package without Project.toml
3053 (arguments
3af351a7
JBV
3054 '(#:julia-package-name "Media"
3055 #:julia-package-uuid "e89f7d12-3494-54d1-8411-f7d8b9ae1f27"))
14f8d587 3056 (propagated-inputs
3057 `(("julia-macrotools" ,julia-macrotools)))
3058 (home-page "https://github.com/JunoLab/Media.jl")
3059 (synopsis "Unified measure and coordinates types")
3060 (description "This package provides a display system which enables the
3061user handle multiple input/output devices and decide what media types get
3062displayed where.")
3063 (license license:expat)))
3064
db2bfcb9
EF
3065(define-public julia-missings
3066 (package
3067 (name "julia-missings")
babfdf75 3068 (version "1.0.2")
db2bfcb9
EF
3069 (source
3070 (origin
3071 (method git-fetch)
3072 (uri (git-reference
3073 (url "https://github.com/JuliaData/Missings.jl")
3074 (commit (string-append "v" version))))
3075 (file-name (git-file-name name version))
3076 (sha256
babfdf75 3077 (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5"))))
db2bfcb9
EF
3078 (build-system julia-build-system)
3079 (propagated-inputs
3080 `(("julia-dataapi" ,julia-dataapi)))
3081 (home-page "https://github.com/JuliaData/Missings.jl")
3082 (synopsis "Additional missing value support for Julia")
3083 (description "This package provides additional functionality for working
3084with @code{missing} values in Julia.")
3085 (license license:expat)))
3086
25bb6f08
EF
3087(define-public julia-mlstyle
3088 (package
3089 (name "julia-mlstyle")
3090 (version "0.4.10")
3091 (source
3092 (origin
3093 (method git-fetch)
3094 (uri (git-reference
3095 (url "https://github.com/thautwarm/MLStyle.jl")
3096 (commit (string-append "v" version))))
3097 (file-name (git-file-name name version))
3098 (sha256
3099 (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
3100 (build-system julia-build-system)
3101 (native-inputs
3102 `(("julia-datastructures" ,julia-datastructures)))
3103 (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
3104 (synopsis "Julia functional programming infrastructures")
3105 (description "This package provides consistent and extensible functional
3106programming infrastructures, and metaprogramming facilities.")
3107 (license license:expat)))
3108
f273a4b7
EF
3109(define-public julia-mocking
3110 (package
3111 (name "julia-mocking")
443ad586 3112 (version "0.7.3")
f273a4b7
EF
3113 (source
3114 (origin
3115 (method git-fetch)
3116 (uri (git-reference
3117 (url "https://github.com/invenia/Mocking.jl")
3118 (commit (string-append "v" version))))
3119 (file-name (git-file-name name version))
3120 (sha256
443ad586 3121 (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg"))))
f273a4b7
EF
3122 (build-system julia-build-system)
3123 (propagated-inputs
443ad586
EF
3124 `(("julia-compat" ,julia-compat)
3125 ("julia-exprtools" ,julia-exprtools)))
f273a4b7
EF
3126 (home-page "https://github.com/invenia/Mocking.jl")
3127 (synopsis "Overload Julia function calls")
3128 (description "The purpose of this package is to allow Julia function calls
3129to be temporarily overloaded for the purpose of testing.")
3130 (license license:expat)))
3131
a5dc1742
EF
3132(define-public julia-mosaicviews
3133 (package
3134 (name "julia-mosaicviews")
3135 (version "0.3.3")
3136 (source
3137 (origin
3138 (method git-fetch)
3139 (uri (git-reference
3140 (url "https://github.com/JuliaArrays/MosaicViews.jl")
3141 (commit (string-append "v" version))))
3142 (file-name (git-file-name name version))
3143 (sha256
3144 (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz"))))
3145 (build-system julia-build-system)
3146 (arguments
3147 `(#:tests? #f)) ; Cycle with ImageCore.jl
3148 (propagated-inputs
3149 `(("julia-mappedarrays" ,julia-mappedarrays)
3150 ("julia-paddedviews" ,julia-paddedviews)
3151 ("julia-stackviews" ,julia-stackviews)))
3152 ;(native-inputs
3153 ; `(("julia-colorvectorspace" ,julia-colorvectorspace)
3154 ; ("julia-imagecore" ,julia-imagecore)))
3155 (home-page "https://github.com/JuliaArrays/MosaicViews.jl")
3156 (synopsis
3157 "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices")
3158 (description "When visualizing images, it is not uncommon to provide a 2D
3159view of different image sources. For example, comparing multiple images of
3160different sizes, getting a preview of machine learning dataset. This package
3161aims to provide easy-to-use tools for such tasks.")
3162 (license license:expat)))
3163
860ca285
EF
3164(define-public julia-msgpack
3165 (package
3166 (name "julia-msgpack")
3167 (version "1.1.0")
3168 (source
3169 (origin
3170 (method git-fetch)
3171 (uri (git-reference
3172 (url "https://github.com/JuliaIO/MsgPack.jl")
3173 (commit (string-append "v" version))))
3174 (file-name (git-file-name name version))
3175 (sha256
3176 (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg"))))
3177 (build-system julia-build-system)
3178 (home-page "https://github.com/JuliaIO/MsgPack.jl")
3179 (synopsis "Julia MsgPack implementation")
3180 (description "@code{MsgPack.jl} is a MessagePack implementation in pure
3181Julia, with type-driven, overloadable packing/unpacking functionality.")
3182 (license license:expat)))
3183
8f7d9ce2
EF
3184(define-public julia-mutablearithmetics
3185 (package
3186 (name "julia-mutablearithmetics")
f70db259 3187 (version "0.2.20")
8f7d9ce2
EF
3188 (source
3189 (origin
3190 (method git-fetch)
3191 (uri (git-reference
3192 (url "https://github.com/jump-dev/MutableArithmetics.jl")
3193 (commit (string-append "v" version))))
3194 (file-name (git-file-name name version))
3195 (sha256
f70db259 3196 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f"))))
8f7d9ce2
EF
3197 (build-system julia-build-system)
3198 (propagated-inputs
3199 `(("julia-offsetarrays" ,julia-offsetarrays)))
3200 (home-page "https://github.com/jump-dev/MutableArithmetics.jl")
3201 (synopsis "Interface for arithmetics on mutable types in Julia")
3202 (description "MutableArithmetics is a Julia package which allows:
3203@itemize
3204@item mutable types to implement mutable arithmetics
3205@item algorithms that could exploit mutable arithmetics to exploit them while
3206still being completely generic
3207@end itemize")
3208 (license license:mpl2.0)))
3209
a5edd83d 3210(define-public julia-nanmath
3211 (package
3212 (name "julia-nanmath")
3213 (version "0.3.5")
3214 (source
3215 (origin
3216 (method git-fetch)
3217 (uri (git-reference
3218 (url "https://github.com/mlubin/NaNMath.jl")
3219 (commit (string-append "v" version))))
3220 (file-name (git-file-name name version))
3221 (sha256
3222 (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q"))))
3223 (build-system julia-build-system)
3224 (home-page "https://github.com/mlubin/NaNMath.jl")
3225 (synopsis "Implementations of basic math functions")
3226 (description "Implementations of basic math functions which return
3227@code{NaN} instead of throwing a @code{DomainError}.")
3228 (license license:expat)))
3229
f52f7a30
EF
3230(define-public julia-nlsolversbase
3231 (package
3232 (name "julia-nlsolversbase")
3233 (version "7.8.0")
3234 (source
3235 (origin
3236 (method git-fetch)
3237 (uri (git-reference
3238 (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
3239 (commit (string-append "v" version))))
3240 (file-name (git-file-name name version))
3241 (sha256
3242 (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98"))))
3243 (build-system julia-build-system)
3244 (propagated-inputs
3245 `(("julia-diffresults" ,julia-diffresults)
3246 ("julia-finitediff" ,julia-finitediff)
3247 ("julia-forwarddiff" ,julia-forwarddiff)))
3248 (native-inputs
3249 `(("julia-optimtestproblems" ,julia-optimtestproblems)
3250 ("julia-recursivearraytools" ,julia-recursivearraytools)))
3251 (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl")
3252 (synopsis "Optimization and equation solver software in JuliaNLSolvers")
3253 (description "This package aims at establishing common ground for Optim.jl,
3254LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to
3255hold objective related callables, information about the objectives, and an
3256interface to interact with these types.")
3257 (license license:expat)))
3258
5be9b3fd
EF
3259(define-public julia-nnlib
3260 (package
3261 (name "julia-nnlib")
28f0a15b 3262 (version "0.7.29")
5be9b3fd
EF
3263 (source
3264 (origin
3265 (method git-fetch)
3266 (uri (git-reference
3267 (url "https://github.com/FluxML/NNlib.jl")
3268 (commit (string-append "v" version))))
3269 (file-name (git-file-name name version))
3270 (sha256
28f0a15b 3271 (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s"))))
5be9b3fd
EF
3272 (build-system julia-build-system)
3273 (arguments
d92bd679 3274 `(#:phases
5be9b3fd 3275 (modify-phases %standard-phases
3af351a7 3276 (add-after 'link-depot 'skip-cuda-tests
5be9b3fd
EF
3277 (lambda _
3278 (substitute* "test/runtests.jl"
d92bd679
EF
3279 (("using CUDA") "")
3280 (("&& CUDA\\.functional\\(\\)") ""))
5be9b3fd
EF
3281 (setenv "NNLIB_TEST_CUDA" "false"))))))
3282 (propagated-inputs
3283 `(("julia-adapt" ,julia-adapt)
3284 ("julia-chainrulescore" ,julia-chainrulescore)
3285 ("julia-requires" ,julia-requires)))
3286 (native-inputs
3287 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)
3288 ("julia-stablerngs" ,julia-stablerngs)
3289 ("julia-zygote" ,julia-zygote)))
3290 (home-page "https://github.com/FluxML/NNlib.jl")
3291 (synopsis "Neural Network primitives with multiple backends")
3292 (description "This package will provide a library of functions useful for
3293machine learning, such as softmax, sigmoid, convolutions and pooling. It
3294doesn't provide any other \"high-level\" functionality like layers or AD.")
3295 (license license:expat)))
3296
2615a8ba
EF
3297(define-public julia-optimtestproblems
3298 (package
3299 (name "julia-optimtestproblems")
3300 (version "2.0.2")
3301 (source
3302 (origin
3303 (method git-fetch)
3304 (uri (git-reference
3305 (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
3306 (commit (string-append "v" version))))
3307 (file-name (git-file-name name version))
3308 (sha256
3309 (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9"))))
3310 (build-system julia-build-system)
3311 (arguments
3af351a7
JBV
3312 `(#:julia-package-name "OptimTestProblems"
3313 #:julia-package-uuid "cec144fc-5a64-5bc6-99fb-dde8f63e154c"))
2615a8ba
EF
3314 (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl")
3315 (synopsis "Collection of optimization test problems")
3316 (description "The purpose of this package is to provide test problems for
3317JuliaNLSolvers packages.")
3318 (license license:expat)))
3319
eccd448c 3320(define-public julia-orderedcollections
3321 (package
3322 (name "julia-orderedcollections")
8812aead 3323 (version "1.4.1")
eccd448c 3324 (source
3325 (origin
3326 (method git-fetch)
3327 (uri (git-reference
3328 (url "https://github.com/JuliaCollections/OrderedCollections.jl")
3329 (commit (string-append "v" version))))
3330 (file-name (git-file-name name version))
3331 (sha256
8812aead 3332 (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf"))))
eccd448c 3333 (build-system julia-build-system)
3334 (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
3335 (synopsis "Associative containers that preserve insertion order")
3336 (description "This package implements @code{OrderedDicts} and
3337@code{OrderedSets}, which are similar to containers in base Julia. However,
3338during iteration the @code{Ordered*} containers return items in the order in
3339which they were added to the collection.")
3340 (license license:expat)))
c0c21d77 3341
fb634a0e 3342(define-public julia-offsetarrays
3343 (package
3344 (name "julia-offsetarrays")
c2305209 3345 (version "1.10.3")
fb634a0e 3346 (source
3347 (origin
3348 (method git-fetch)
3349 (uri (git-reference
3350 (url "https://github.com/JuliaArrays/OffsetArrays.jl")
3351 (commit (string-append "v" version))))
3352 (file-name (git-file-name name version))
3353 (sha256
c2305209 3354 (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc"))))
fb634a0e 3355 (build-system julia-build-system)
3356 (propagated-inputs
3357 `(("julia-adapt" ,julia-adapt)))
3358 ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
3359 (arguments '(#:tests? #f))
3360 (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
3361 (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
3362 (description "@code{OffsetArrays.jl} provides Julia users with arrays that
3363have arbitrary indices, similar to those found in some other programming
3364languages like Fortran.")
3365 (license license:expat)))
3366
99492890
EF
3367(define-public julia-paddedviews
3368 (package
3369 (name "julia-paddedviews")
3370 (version "0.5.8")
3371 (source
3372 (origin
3373 (method git-fetch)
3374 (uri (git-reference
3375 (url "https://github.com/JuliaArrays/PaddedViews.jl")
3376 (commit (string-append "v" version))))
3377 (file-name (git-file-name name version))
3378 (sha256
3379 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h"))))
3380 (build-system julia-build-system)
99492890
EF
3381 (propagated-inputs
3382 `(("julia-offsetarrays" ,julia-offsetarrays)))
c2051168 3383 (native-inputs
3384 `(("julia-documenter" ,julia-documenter)))
99492890
EF
3385 (home-page "https://github.com/JuliaArrays/PaddedViews.jl")
3386 (synopsis "Add virtual padding to the edges of an array")
3387 (description "@code{PaddedViews} provides a simple wrapper type,
3388@code{PaddedView}, to add \"virtual\" padding to any array without copying data.
3389Edge values not specified by the array are assigned a @code{fillvalue}.
3390Multiple arrays may be \"promoted\" to have common indices using the
3391@code{paddedviews} function.")
3392 (license license:expat)))
3393
dd331f49
EF
3394(define-public julia-parameters
3395 (package
3396 (name "julia-parameters")
3397 (version "0.12.2")
3398 (source
3399 (origin
3400 (method git-fetch)
3401 (uri (git-reference
3402 (url "https://github.com/mauro3/Parameters.jl")
3403 (commit (string-append "v" version))))
3404 (file-name (git-file-name name version))
3405 (sha256
3406 (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2"))))
3407 (build-system julia-build-system)
3408 (propagated-inputs
3409 `(("julia-orderedcollections" ,julia-orderedcollections)
3410 ("julia-unpack" ,julia-unpack)))
3411 (home-page "https://github.com/mauro3/Parameters.jl")
3412 (synopsis "Numerical-model parameter helpers")
3413 (description "This package contains types with default field values, keyword
3414constructors and (un-)pack macros. Keyword functions can be slow in Julia,
3415however, the normal positional constructor is also provided and could be used in
3416performance critical code.")
3417 (license license:expat)))
3418
c0c21d77 3419(define-public julia-parsers
3420 (package
3421 (name "julia-parsers")
165a85a6 3422 (version "1.1.0")
c0c21d77 3423 (source
3424 (origin
3425 (method git-fetch)
3426 (uri (git-reference
3427 (url "https://github.com/JuliaData/Parsers.jl")
3428 (commit (string-append "v" version))))
3429 (file-name (git-file-name name version))
3430 (sha256
165a85a6 3431 (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk"))))
c0c21d77 3432 (build-system julia-build-system)
3433 (home-page "https://github.com/JuliaData/Parsers.jl")
3434 (synopsis "Fast parsing machinery for basic types in Julia")
3435 (description "@code{Parsers.jl} is a collection of type parsers and
3436utilities for Julia.")
3437 (license license:expat)))
8f59a9fb 3438
9e30f659
EF
3439(define-public julia-pdmats
3440 (package
3441 (name "julia-pdmats")
a424ebde 3442 (version "0.11.1")
9e30f659
EF
3443 (source
3444 (origin
3445 (method git-fetch)
3446 (uri (git-reference
3447 (url "https://github.com/JuliaStats/PDMats.jl")
3448 (commit (string-append "v" version))))
3449 (file-name (git-file-name name version))
3450 (sha256
a424ebde 3451 (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0"))))
9e30f659
EF
3452 (build-system julia-build-system)
3453 (home-page "https://github.com/JuliaStats/PDMats.jl")
3454 (synopsis
3455 "Uniform Interface for positive definite matrices of various structures")
3456 (description "PDMats.jl supports efficient computation on positive definite
3457matrices of various structures. In particular, it provides uniform interfaces
3458to use positive definite matrices of various structures for writing generic
3459algorithms, while ensuring that the most efficient implementation is used in
3460actual computation.")
3461 (license license:expat)))
f11621f1 3462
ab942d5c
EF
3463(define-public julia-plotthemes
3464 (package
3465 (name "julia-plotthemes")
3466 (version "2.0.1")
3467 (source
3468 (origin
3469 (method git-fetch)
3470 (uri (git-reference
3471 (url "https://github.com/JuliaPlots/PlotThemes.jl")
3472 (commit (string-append "v" version))))
3473 (file-name (git-file-name name version))
3474 (sha256
3475 (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh"))))
3476 (build-system julia-build-system)
3477 (propagated-inputs
3478 `(("julia-plotutils" ,julia-plotutils)
3479 ("julia-requires" ,julia-requires)))
3480 (home-page "https://github.com/JuliaPlots/PlotThemes.jl")
3481 (synopsis "Themes for the Julia plotting package Plots.jl")
3482 (description
3483 "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.")
3484 (license license:expat)))
3485
f11621f1
EF
3486(define-public julia-plotutils
3487 (package
3488 (name "julia-plotutils")
235456d6 3489 (version "1.0.15")
f11621f1
EF
3490 (source
3491 (origin
3492 (method git-fetch)
3493 (uri (git-reference
3494 (url "https://github.com/JuliaPlots/PlotUtils.jl")
3495 (commit (string-append "v" version))))
3496 (file-name (git-file-name name version))
3497 (sha256
235456d6 3498 (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105"))))
f11621f1
EF
3499 (build-system julia-build-system)
3500 (propagated-inputs
3501 `(("julia-colors" ,julia-colors)
3502 ("julia-colorschemes" ,julia-colorschemes)
3503 ("julia-reexport" ,julia-reexport)))
3504 (native-inputs
3505 `(("julia-stablerngs" ,julia-stablerngs)))
3506 (home-page "https://github.com/JuliaPlots/PlotUtils.jl")
3507 (synopsis "Helper algorithms for building plotting components")
d342d066 3508 (description "This package contains generic helper algorithms for building
f11621f1
EF
3509plotting components.")
3510 (license license:expat)))
28afc9ba 3511
9f92c8b5
EF
3512(define-public julia-pooledarrays
3513 (package
3514 (name "julia-pooledarrays")
ddec4985 3515 (version "1.3.0")
9f92c8b5
EF
3516 (source
3517 (origin
3518 (method git-fetch)
3519 (uri (git-reference
3520 (url "https://github.com/JuliaData/PooledArrays.jl")
3521 (commit (string-append "v" version))))
3522 (file-name (git-file-name name version))
3523 (sha256
ddec4985 3524 (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr"))))
9f92c8b5
EF
3525 (build-system julia-build-system)
3526 (propagated-inputs
3527 `(("julia-dataapi" ,julia-dataapi)))
3528 (home-page "https://github.com/JuliaData/PooledArrays.jl")
3529 (synopsis "Pooled representation of arrays in Julia")
3530 (description "This package provides a pooled representation of arrays for
3531purposes of compression when there are few unique elements.")
3532 (license license:expat)))
3533
ed6c0f85
EF
3534(define-public julia-positivefactorizations
3535 (package
3536 (name "julia-positivefactorizations")
3537 (version "0.2.4")
3538 (source
3539 (origin
3540 (method git-fetch)
3541 (uri (git-reference
3542 (url "https://github.com/timholy/PositiveFactorizations.jl")
3543 (commit (string-append "v" version))))
3544 (file-name (git-file-name name version))
3545 (sha256
3546 (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23"))))
3547 (build-system julia-build-system)
3548 (native-inputs
3549 `(("julia-forwarddiff" ,julia-forwarddiff)
3550 ("julia-reversediff" ,julia-reversediff)))
3551 (home-page "https://github.com/timholy/PositiveFactorizations.jl")
3552 (synopsis "Positive-definite \"approximations\" to matrices")
3553 (description "@code{PositiveFactorizations} is a package for computing a
3554positive definite matrix decomposition (factorization) from an arbitrary
3555symmetric input. The motivating application is optimization (Newton or
3556quasi-Newton methods), in which the canonical search direction -H/g (H being the
3557Hessian and g the gradient) may not be a descent direction if H is not positive
3558definite.")
3559 (license license:expat)))
3560
f7eaa69d
EF
3561(define-public julia-preferences
3562 (package
3563 (name "julia-preferences")
3564 (version "1.2.2")
3565 (source
3566 (origin
3567 (method git-fetch)
3568 (uri (git-reference
3569 (url "https://github.com/JuliaPackaging/Preferences.jl")
3570 (commit (string-append "v" version))))
3571 (file-name (git-file-name name version))
3572 (sha256
3573 (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
3574 (build-system julia-build-system)
3575 (arguments
3576 `(#:tests? #f)) ; Tests try to mkdir /.julia
3577 (home-page "https://github.com/JuliaPackaging/Preferences.jl")
3578 (synopsis "Store configuration switches to TOML files")
3579 (description "The @code{Preferences} package provides an integrated way for
3580packages to store configuration switches to persistent TOML files, and use those
3581pieces of information at both run time and compile time in Julia. This enables
3582the user to modify the behavior of a package, and have that choice reflected in
3583everything from run time algorithm choice to code generation at compile time.")
3584 (license license:expat)))
3585
d2d1f8bf
EF
3586(define-public julia-prettytables
3587 (package
3588 (name "julia-prettytables")
3589 (version "1.0.1")
3590 (source
3591 (origin
3592 (method git-fetch)
3593 (uri (git-reference
3594 (url "https://github.com/ronisbr/PrettyTables.jl")
3595 (commit (string-append "v" version))))
3596 (file-name (git-file-name name version))
3597 (sha256
3598 (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw"))))
3599 (build-system julia-build-system)
3600 (arguments
3601 `(#:phases
3602 (modify-phases %standard-phases
3af351a7 3603 (add-after 'link-depot 'skip-color-tests
d2d1f8bf
EF
3604 (lambda _
3605 (substitute* "test/text_backend.jl"
3606 ((".*colors\\.jl.*") ""))
3607 #t)))))
3608 (propagated-inputs
3609 `(("julia-crayons" ,julia-crayons)
3610 ("julia-formatting" ,julia-formatting)
3611 ("julia-reexport" ,julia-reexport)
3612 ("julia-tables" ,julia-tables)))
3613 (home-page "https://github.com/ronisbr/PrettyTables.jl")
3614 (synopsis "Print data in formatted tables")
3615 (description "This package has the purpose to print data in matrices in a
3616human-readable format.")
3617 (license license:expat)))
8733d2c2 3618
3893f136
EF
3619(define-public julia-pycall
3620 (package
3621 (name "julia-pycall")
11446953 3622 (version "1.92.5")
3893f136
EF
3623 (source
3624 (origin
3625 (method git-fetch)
3626 (uri (git-reference
3627 (url "https://github.com/JuliaPy/PyCall.jl")
3628 (commit (string-append "v" version))))
3629 (file-name (git-file-name name version))
3630 (sha256
3631 (base32
11446953 3632 "1fj5d1ihnhnm0pl4hbx6hcd2bpdyhm8jiaqah2axsbd069j70saf"))))
3893f136
EF
3633 (build-system julia-build-system)
3634 (arguments
3635 `(#:imported-modules ((guix build python-build-system)
3636 ,@%julia-build-system-modules)
3637 #:modules ((guix build julia-build-system)
3638 (guix build utils)
3639 ((guix build python-build-system) #:prefix python:))
3640 #:phases
3641 (modify-phases %standard-phases
3af351a7 3642 (add-after 'link-depot 'remove-conda
3893f136
EF
3643 (lambda _
3644 (substitute* "Project.toml"
3645 ((".*Conda.*") ""))
3646 (substitute* (list "src/PyCall.jl"
3647 "test/runtests.jl")
3648 (("import Conda") ""))
3649 (substitute* "deps/depsutils.jl"
3650 (("Conda.PYTHONDIR") "\"/\""))
3651 #t))
3af351a7 3652 (add-after 'link-depot 'set-python
3893f136
EF
3653 (lambda* (#:key inputs outputs #:allow-other-keys)
3654 (let ((python (assoc-ref inputs "python")))
3655 (setenv "PYCALL_JL_RUNTIME_PYTHON"
3656 (string-append python "/bin/python3"))
3657 (with-output-to-file "deps/deps.jl"
3658 (lambda _
3659 (format #t
3660 "const python = \"~a/bin/python3\"~@
3661 const pyprogramname = \"~a/bin/python3\"~@
3662 const libpython = \"~a/lib/libpython~a.so.1.0\"~@
3663 const PYTHONHOME = \"~a\"~@
3664 const pyversion_build = v\"~a\"~@
3665 const conda = false~%"
3666 python
3667 python
3668 python
3669 (python:python-version python)
3670 python
3671 ,(package-version python))))
3672 #t)))
3673 (add-before 'check 'pre-check
3674 (lambda _
3675 (setenv "CI" "true")
3676 (setenv "JULIA_PKGEVAL" "true")
3677 #t)))))
3678 (propagated-inputs
3679 `(("julia-macrotools" ,julia-macrotools)
3680 ("julia-versionparsing" ,julia-versionparsing)))
3681 (inputs
3682 `(("python" ,python)))
3683 (native-inputs
3684 `(("python-numpy" ,python-numpy)))
3685 (home-page "https://github.com/JuliaPy/PyCall.jl")
3686 (synopsis "Call Python functions from the Julia language")
3687 (description "This package provides the ability to directly call and fully
3688interoperate with Python from the Julia language. You can import arbitrary
3689Python modules from Julia, call Python functions (with automatic conversion of
3690types between Julia and Python), define Python classes from Julia methods, and
3691share large data structures between Julia and Python without copying them.")
3692 (license license:expat)))
3693
726a78b8
EF
3694(define-public julia-pyplot
3695 (package
3696 (name "julia-pyplot")
3697 (version "2.10.0")
3698 (source
3699 (origin
3700 (method git-fetch)
3701 (uri (git-reference
3702 (url "https://github.com/JuliaPy/PyPlot.jl")
3703 (commit (string-append "v" version))))
3704 (file-name (git-file-name name version))
3705 (sha256
3706 (base32 "007zs0imfgs69f30pp2a3rc93kl0qiq7qjx6ig35z4wzkmps4skd"))))
3707 (build-system julia-build-system)
3708 (propagated-inputs
3709 `(("julia-colors" ,julia-colors)
3710 ("julia-latexstrings" ,julia-latexstrings)
3711 ("julia-pycall" ,julia-pycall)
3712 ("julia-versionparsing" ,julia-versionparsing)
3713 ;; python-matplotlib is expected to be available at runtime.
3714 ("python-matplotlib" ,python-matplotlib)))
3715 (home-page "https://github.com/JuliaPy/PyPlot.jl")
3716 (synopsis "Plotting for Julia based on matplotlib.pyplot")
3717 (description "This package provides a Julia interface to the Matplotlib
3718plotting library from Python, and specifically to the @code{matplotlib.pyplot}
3719module. PyPlot uses the Julia PyCall package to call Matplotlib directly from
3720Julia with little or no overhead (arrays are passed without making a copy).")
3721 (license license:expat)))
3722
8733d2c2
EF
3723(define-public julia-quadgk
3724 (package
3725 (name "julia-quadgk")
3726 (version "2.4.1")
3727 (source
3728 (origin
3729 (method git-fetch)
3730 (uri (git-reference
3731 (url "https://github.com/JuliaMath/QuadGK.jl")
3732 (commit (string-append "v" version))))
3733 (file-name (git-file-name name version))
3734 (sha256
3735 (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
3736 (build-system julia-build-system)
3737 (propagated-inputs
3738 `(("julia-datastructures" ,julia-datastructures)))
3739 (home-page "https://github.com/JuliaMath/QuadGK.jl")
3740 (synopsis "Adaptive 1d numerical Gauss–Kronrod integration")
3741 (description "This package provides support for one-dimensional numerical
3742integration in Julia using adaptive Gauss-Kronrod quadrature. The code was
3743originally part of Base Julia. It supports integration of arbitrary numeric
3744types, including arbitrary precision (@code{BigFloat}), and even integration of
3745arbitrary normed vector spaces (e.g. matrix-valued integrands).")
3746 (license license:expat)))
d2d1f8bf 3747
277fef20
EF
3748(define-public julia-quadmath
3749 (package
3750 (name "julia-quadmath")
3751 (version "0.5.5")
3752 (source
3753 (origin
3754 (method git-fetch)
3755 (uri (git-reference
3756 (url "https://github.com/JuliaMath/Quadmath.jl")
3757 (commit (string-append "v" version))))
3758 (file-name (git-file-name name version))
3759 (sha256
3760 (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w"))))
3761 (build-system julia-build-system)
3762 (arguments
3763 `(#:phases
3764 (modify-phases %standard-phases
3af351a7 3765 (add-after 'link-depot 'hardcode-libmath-location
277fef20
EF
3766 (lambda* (#:key inputs #:allow-other-keys)
3767 (let ((gcclib (assoc-ref inputs "gcc:lib")))
3768 (substitute* "src/Quadmath.jl"
3769 (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib))
3770 (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib)))
3771 #t))))))
3772 (propagated-inputs
3773 `(("julia-requires" ,julia-requires)))
3774 (inputs
3775 `(("gcc:lib" ,gcc "lib")))
3776 (native-inputs
3777 `(("julia-specialfunctions" ,julia-specialfunctions)))
3778 (home-page "https://github.com/JuliaMath/Quadmath.jl")
3779 (synopsis "Float128 and libquadmath for the Julia language")
3780 (description "This is a Julia interface to @code{libquadmath}, providing a
3781@code{Float128} type corresponding to the IEEE754 binary128 floating point
3782format.")
3783 (license license:expat)))
3784
12289754
EF
3785(define-public julia-quaternions
3786 (package
3787 (name "julia-quaternions")
3788 (version "0.4.2")
3789 (source
3790 (origin
3791 (method git-fetch)
3792 (uri (git-reference
3793 (url "https://github.com/JuliaGeometry/Quaternions.jl")
3794 (commit (string-append "v" version))))
3795 (file-name (git-file-name name version))
3796 (sha256
3797 (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s"))))
3798 (build-system julia-build-system)
3799 (propagated-inputs
3800 `(("julia-dualnumbers" ,julia-dualnumbers)))
3801 (home-page "https://github.com/JuliaGeometry/Quaternions.jl")
3802 (synopsis "Quaternion and dual-quaternion functionality")
3803 (description "Quaternions are best known for their suitability as
3804representations of 3D rotational orientation. They can also be viewed as an
3805extension of complex numbers.")
3806 (license license:expat)))
3807
209a80c1
EF
3808(define-public julia-queryoperators
3809 (package
3810 (name "julia-queryoperators")
3811 (version "0.9.3")
3812 (source
3813 (origin
3814 (method git-fetch)
3815 (uri (git-reference
3816 (url "https://github.com/queryverse/QueryOperators.jl")
3817 (commit (string-append "v" version))))
3818 (file-name (git-file-name name version))
3819 (sha256
3820 (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22"))))
3821 (build-system julia-build-system)
3822 (propagated-inputs
3823 `(("julia-datastructures" ,julia-datastructures)
3824 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
3825 ("julia-tableshowutils" ,julia-tableshowutils)))
3826 (home-page "https://github.com/queryverse/QueryOperators.jl")
3827 (synopsis "Query operators for Julia")
3828 (description "This package contains the underlying query operators that are
3829exposed to users in @code{Query.jl}.")
3830 (license license:expat)))
3831
a3369594
EF
3832(define-public julia-rangearrays
3833 (package
3834 (name "julia-rangearrays")
3835 (version "0.3.2")
3836 (source
3837 (origin
3838 (method git-fetch)
3839 (uri (git-reference
3840 (url "https://github.com/JuliaArrays/RangeArrays.jl")
3841 (commit (string-append "v" version))))
3842 (file-name (git-file-name name version))
3843 (sha256
3844 (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg"))))
3845 (build-system julia-build-system)
3846 (home-page "https://github.com/JuliaArrays/RangeArrays.jl")
3847 (synopsis "Array data structures with autogenerated columns")
3848 (description "The goal of RangeArrays is to provide efficient and convenient
3849array data structures where the columns of the arrays are generated (on the fly)
3850by Ranges.")
3851 (license license:expat)))
3852
b2ca58be
EF
3853(define-public julia-ratios
3854 (package
3855 (name "julia-ratios")
3856 (version "0.4.0")
3857 (source
3858 (origin
3859 (method git-fetch)
3860 (uri (git-reference
3861 (url "https://github.com/timholy/Ratios.jl")
3862 (commit (string-append "v" version))))
3863 (file-name (git-file-name name version))
3864 (sha256
3865 (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh"))))
3866 (build-system julia-build-system)
3867 (home-page "https://github.com/timholy/Ratios.jl")
3868 (synopsis "Faster Rational-like types for Julia")
3869 (description "This package provides types similar to Julia's @code{Rational}
3870type, which make some sacrifices but have better computational performance.")
3871 (license license:expat)))
3872
28afc9ba
EF
3873(define-public julia-recipesbase
3874 (package
3875 (name "julia-recipesbase")
3876 (version "1.1.1")
3877 (source
3878 (origin
3879 (method git-fetch)
3880 (uri (git-reference
3881 (url "https://github.com/JuliaPlots/RecipesBase.jl")
3882 (commit (string-append "v" version))))
3883 (file-name (git-file-name name version))
3884 (sha256
3885 (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5"))))
3886 (build-system julia-build-system)
3887 (home-page "https://github.com/JuliaPlots/RecipesBase.jl")
3888 (synopsis "Define transformation recipes on user types")
3889 (description "This package implements handy macros @code{@@recipe} and
3890@code{@@series} which will define a custom transformation and attach attributes
3891for user types. Its design is an attempt to simplify and generalize the summary
3892and display of types and data from external packages. With this package it is
3893possible to describe visualization routines that can be used as components in
3894more complex visualizations.")
3895 (license license:expat)))
9e30f659 3896
ab7d4e85
EF
3897(define-public julia-recipespipeline
3898 (package
3899 (name "julia-recipespipeline")
831ce9b9 3900 (version "0.3.4")
ab7d4e85
EF
3901 (source
3902 (origin
3903 (method git-fetch)
3904 (uri (git-reference
3905 (url "https://github.com/JuliaPlots/RecipesPipeline.jl")
3906 (commit (string-append "v" version))))
3907 (file-name (git-file-name name version))
3908 (sha256
831ce9b9 3909 (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7"))))
ab7d4e85
EF
3910 (build-system julia-build-system)
3911 (arguments
3912 `(#:tests? #f)) ; Cycle with Plots.jl.
3913 (propagated-inputs
3914 `(("julia-nanmath" ,julia-nanmath)
3915 ("julia-plotutils" ,julia-plotutils)
3916 ("julia-recipesbase" ,julia-recipesbase)))
3917 (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/")
3918 (synopsis "Utilities for processing recipes")
3919 (description "This package was factored out of @code{Plots.jl} to allow any
3920other plotting package to use the recipe pipeline. In short, the extremely
3921lightweight @code{RecipesBase.jl} package can be depended on by any package to
3922define \"recipes\": plot specifications of user-defined types, as well as custom
3923plot types. @code{RecipePipeline.jl} contains the machinery to translate these
3924recipes to full specifications for a plot.")
3925 (license license:expat)))
3926
01e9e008
EF
3927(define-public julia-recursivearraytools
3928 (package
3929 (name "julia-recursivearraytools")
f93a9835 3930 (version "2.16.1")
01e9e008
EF
3931 (source
3932 (origin
3933 (method git-fetch)
3934 (uri (git-reference
3935 (url "https://github.com/SciML/RecursiveArrayTools.jl")
3936 (commit (string-append "v" version))))
3937 (file-name (git-file-name name version))
3938 (sha256
f93a9835 3939 (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf"))))
01e9e008
EF
3940 (build-system julia-build-system)
3941 (arguments
3942 `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl.
3943 (propagated-inputs
3944 `(("julia-arrayinterface" ,julia-arrayinterface)
f93a9835 3945 ("julia-chainrulescore" ,julia-chainrulescore)
01e9e008 3946 ("julia-docstringextensions" ,julia-docstringextensions)
01e9e008 3947 ("julia-recipesbase" ,julia-recipesbase)
f93a9835 3948 ("julia-requires" ,julia-requires)
01e9e008
EF
3949 ("julia-staticarrays" ,julia-staticarrays)
3950 ("julia-zygoterules" ,julia-zygoterules)))
3951 ;(native-inputs
3952 ; `(("julia-forwarddiff" ,julia-forwarddiff)
3953 ; ("julia-nlsolve" ,julia-nlsolve)
3954 ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq)
3955 ; ("julia-structarrays" ,julia-structarrays)
01e9e008
EF
3956 ; ("julia-zygote" ,julia-zygote)))
3957 (home-page "https://github.com/SciML/RecursiveArrayTools.jl")
3958 (synopsis "Tools for handling objects like arrays of arrays and deeper nestings")
3959 (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with
3960recursive arrays like arrays of arrays.")
3961 (license license:expat)))
3962
02543b52 3963(define-public julia-reexport
3964 (package
3965 (name "julia-reexport")
09ee0df8 3966 (version "1.2.2")
02543b52 3967 (source
3968 (origin
3969 (method git-fetch)
3970 (uri (git-reference
3971 (url "https://github.com/simonster/Reexport.jl")
d964f9d8 3972 (commit (string-append "v" version))))
02543b52 3973 (file-name (git-file-name name version))
3974 (sha256
09ee0df8 3975 (base32 "0inf5q6f01ncd5c5wm8mwzv2hs627ng6xlh8dhrlflp321hbamwf"))))
02543b52 3976 (build-system julia-build-system)
3977 (home-page "https://github.com/simonster/Reexport.jl")
3978 (synopsis "Re-export modules and symbols")
3979 (description "This package provides tools to re-export modules and symbols.")
3980 (license license:expat)))
56753c0f
EF
3981
3982(define-public julia-referencetests
3983 (package
3984 (name "julia-referencetests")
3985 (version "0.9.7")
3986 (source
3987 (origin
3988 (method git-fetch)
3989 (uri (git-reference
3990 (url "https://github.com/JuliaTesting/ReferenceTests.jl")
3991 (commit (string-append "v" version))))
3992 (file-name (git-file-name name version))
3993 (sha256
3994 (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9"))))
3995 (build-system julia-build-system)
3996 (arguments
3997 `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl.
3998 (propagated-inputs
3999 `(("julia-deepdiffs" ,julia-deepdiffs)
4000 ("julia-distances" ,julia-distances)
4001 ("julia-fileio" ,julia-fileio)
4002 ("julia-imagecore" ,julia-imagecore)
4003 ("julia-imageinterminal" ,julia-imageinterminal)))
4004 ;(native-inputs
4005 ; `(("julia-csvfiles" ,julia-csvfiles)
4006 ; ("julia-dataframes" ,julia-dataframes)
4007 ; ("julia-gr" ,julia-gr)
4008 ; ("julia-imagemagick" ,julia-imagemagick)
4009 ; ("julia-imagetransformations" ,julia-imagetransformations)
4010 ; ("julia-plots" ,julia-plots)
4011 ; ("julia-testimages" ,julia-testimages)))
4012 (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/")
4013 (synopsis "Utility package for comparing data against reference files")
4014 (description "@code{ReferenceTests.jl} is a Julia package that adds a couple
4015of additional macros to your testing toolbox. In particular, it focuses on
4016functionality for testing values against reference files, which in turn the
4017package can help create and update if need be.")
4018 (license license:expat)))
02543b52 4019
658fca53 4020(define-public julia-requires
4021 (package
4022 (name "julia-requires")
4023 (version "1.1.3")
4024 (source
4025 (origin
4026 (method git-fetch)
4027 (uri (git-reference
4028 (url "https://github.com/JuliaPackaging/Requires.jl/")
4029 (commit (string-append "v" version))))
4030 (file-name (git-file-name name version))
4031 (sha256
4032 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01"))))
4033 (build-system julia-build-system)
2ce8e5e1 4034 (arguments
4035 `(#:parallel-tests? #f))
658fca53 4036 (inputs ;required for test
4037 `(("julia-example" ,julia-example)))
4038 (propagated-inputs
4039 `(("julia-colors" ,julia-colors)))
4040 (home-page "https://github.com/JuliaPackaging/Requires.jl/")
4041 (synopsis "Faster package loader")
4042 (description "This package make loading packages faster, maybe. It
4043supports specifying glue code in packages which will load automatically when
4044another package is loaded, so that explicit dependencies (and long load times)
4045can be avoided.")
4046 (license license:expat)))
4047
e9a0f6a4
EF
4048(define-public julia-reversediff
4049 (package
4050 (name "julia-reversediff")
4051 (version "1.9.0")
4052 (source
4053 (origin
4054 (method git-fetch)
4055 (uri (git-reference
4056 (url "https://github.com/JuliaDiff/ReverseDiff.jl")
4057 (commit (string-append "v" version))))
4058 (file-name (git-file-name name version))
4059 (sha256
4060 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl"))))
4061 (build-system julia-build-system)
4062 (propagated-inputs
4063 `(("julia-diffresults" ,julia-diffresults)
4064 ("julia-diffrules" ,julia-diffrules)
4065 ("julia-forwarddiff" ,julia-forwarddiff)
4066 ("julia-functionwrappers" ,julia-functionwrappers)
4067 ("julia-macrotools" ,julia-macrotools)
4068 ("julia-nanmath" ,julia-nanmath)
4069 ("julia-specialfunctions" ,julia-specialfunctions)
4070 ("julia-staticarrays" ,julia-staticarrays)))
4071 (native-inputs
4072 `(("julia-difftests" ,julia-difftests)
4073 ("julia-fillarrays" ,julia-fillarrays)))
4074 (home-page "https://github.com/JuliaDiff/ReverseDiff.jl")
4075 (synopsis "Reverse Mode Automatic Differentiation for Julia")
4076 (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based
4077reverse mode @acronym{AD, automatic differentiation}, that implements methods to
4078take gradients, Jacobians, Hessians, and higher-order derivatives of native
4079Julia functions (or any callable object, really).")
4080 (license license:expat)))
4081
dd7a77c3 4082(define-public julia-richardson
4083 (package
4084 (name "julia-richardson")
4085 (version "1.4.0")
4086 (source
4087 (origin
4088 (method git-fetch)
4089 (uri (git-reference
4090 (url "https://github.com/JuliaMath/Richardson.jl")
4091 (commit (string-append "v" version))))
4092 (file-name (git-file-name name version))
4093 (sha256
4094 (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx"))))
4095 (build-system julia-build-system)
4096 (home-page "https://juliapackages.com/p/richardson")
4097 (synopsis "Extrapolate function using Richardson method")
4098 (description "This package provides a function extrapolate that
4099extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f}
4100only at a geometric sequence of points @code{> x0} (or optionally @code{<
4101x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken
4102tableau, which adaptively increases the degree of an extrapolation polynomial
4103until convergence is achieved to a desired tolerance (or convergence stalls
4104due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to
4105high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some
4106other power series in @code{h}.")
4107 (license license:expat)))
4108
1fde30c2 4109(define-public julia-rotations
d09223ed
EF
4110 ;; This is the first commit with support for julia-1.6.
4111 (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788")
4112 (revision "1"))
4113 (package
4114 (name "julia-rotations")
4115 (version (git-version "1.0.2" revision commit))
4116 (source
4117 (origin
4118 (method git-fetch)
4119 (uri (git-reference
4120 (url "https://github.com/JuliaGeometry/Rotations.jl")
4121 (commit commit)))
4122 (file-name (git-file-name name version))
4123 (sha256
4124 (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19"))))
4125 (build-system julia-build-system)
4126 (propagated-inputs
4127 `(("julia-staticarrays" ,julia-staticarrays)))
4128 (native-inputs
4129 `(("julia-benchmarktools" ,julia-benchmarktools)
4130 ("julia-forwarddiff" ,julia-forwarddiff)
4131 ("julia-unitful" ,julia-unitful)))
4132 (home-page "https://github.com/JuliaGeometry/Rotations.jl")
4133 (synopsis "Julia implementations for different rotation parameterisations")
4134 (description "This package implements various 3D rotation parameterizations
1fde30c2
EF
4135and defines conversions between them. At their heart, each rotation
4136parameterization is a 3×3 unitary (orthogonal) matrix (based on the
4137@code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin
4138through matrix-vector multiplication.")
d09223ed 4139 (license license:expat))))
1fde30c2 4140
9f3dae8f
EF
4141(define-public julia-safetestsets
4142 ;; The only release tag is the first commit in the repository.
4143 (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21")
4144 (revision "1"))
4145 (package
4146 (name "julia-safetestsets")
4147 (version (git-version "0.0.1" revision commit))
4148 (source
4149 (origin
4150 (method git-fetch)
4151 (uri (git-reference
4152 (url "https://github.com/YingboMa/SafeTestsets.jl")
4153 (commit commit)))
4154 (file-name (git-file-name name version))
4155 (sha256
4156 (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96"))))
4157 (build-system julia-build-system)
4158 (arguments
3af351a7
JBV
4159 `(#:julia-package-name "SafeTestsets"
4160 #:julia-package-uuid "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"))
9f3dae8f
EF
4161 (native-inputs
4162 `(("julia-staticarrays" ,julia-staticarrays)))
4163 (home-page "https://github.com/YingboMa/SafeTestsets.jl")
4164 (synopsis "Julia's testset in a module")
4165 (description "This package contains the testset from Julia, packaged into
4166a loadable module.")
4167 (license license:expat))))
4168
647edfd0
EF
4169(define-public julia-sass
4170 (package
4171 (name "julia-sass")
4172 (version "0.2.0")
4173 (source
4174 (origin
4175 (method git-fetch)
4176 (uri (git-reference
4177 (url "https://github.com/piever/Sass.jl")
4178 (commit (string-append "v" version))))
4179 (file-name (git-file-name name version))
4180 (sha256
4181 (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
4182 (build-system julia-build-system)
4183 (propagated-inputs
4184 `(("julia-libsass-jll" ,julia-libsass-jll)))
4185 (home-page "https://github.com/piever/Sass.jl")
4186 (synopsis "Compile scss and sass file to css")
4187 (description "This package provides a simple Julian API to use the
4188@code{libsass} library to compile scss and sass files to css.")
4189 (license license:expat)))
4190
014421ee
EF
4191(define-public julia-scratch
4192 (package
4193 (name "julia-scratch")
48bb6199 4194 (version "1.1.0")
014421ee
EF
4195 (source
4196 (origin
4197 (method git-fetch)
4198 (uri (git-reference
4199 (url "https://github.com/JuliaPackaging/Scratch.jl")
4200 (commit (string-append "v" version))))
4201 (file-name (git-file-name name version))
4202 (sha256
4203 (base32
48bb6199 4204 "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx"))))
014421ee
EF
4205 (build-system julia-build-system)
4206 (arguments
4207 `(#:tests? #f)) ; Test suite tries to access the Julia package registry.
4208 (home-page "https://github.com/JuliaPackaging/Scratch.jl")
4209 (synopsis "Scratch spaces for all your persistent mutable data needs")
4210 (description "This repository implements the scratch spaces API for
4211package-specific mutable containers of data. These spaces can contain datasets,
4212text, binaries, or any other kind of data that would be convenient to store in
4213a location specific to your package. As compared to Artifacts, these containers
4214of data are mutable. Because the scratch space location on disk is not very
4215user-friendly, scratch spaces should, in general, not be used for a storing
4216files that the user must interact with through a file browser.")
4217 (license license:expat)))
4218
1ba8c88f
EF
4219(define-public julia-showoff
4220 (package
4221 (name "julia-showoff")
4222 (version "1.0.2")
4223 (source
4224 (origin
4225 (method git-fetch)
4226 (uri (git-reference
4227 (url "https://github.com/JuliaGraphics/Showoff.jl")
4228 (commit (string-append "v" version))))
4229 (file-name (git-file-name name version))
4230 (sha256
4231 (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53"))))
4232 (build-system julia-build-system)
4233 (home-page "https://github.com/JuliaGraphics/Showoff.jl")
4234 (synopsis "Nicely format an array of n things for tables and plots")
4235 (description "@code{Showoff} provides an interface for consistently
4236formatting an array of n things, e.g. numbers, dates, unitful values. It's used
4237in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.")
4238 (license license:expat)))
4239
63a83375
EF
4240(define-public julia-simpletraits
4241 (package
4242 (name "julia-simpletraits")
b9264f28 4243 (version "0.9.4")
63a83375
EF
4244 (source
4245 (origin
4246 (method git-fetch)
4247 (uri (git-reference
4248 (url "https://github.com/mauro3/SimpleTraits.jl")
4249 (commit (string-append "v" version))))
4250 (file-name (git-file-name name version))
4251 (sha256
b9264f28 4252 (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05"))))
63a83375
EF
4253 (build-system julia-build-system)
4254 (propagated-inputs
4255 `(("julia-macrotools" ,julia-macrotools)))
4256 (home-page "https://github.com/mauro3/SimpleTraits.jl")
4257 (synopsis "Simple Traits for Julia")
4258 (description "This package provides a macro-based implementation of traits.
4259The main idea behind traits is to group types outside the type-hierarchy and to
4260make dispatch work with that grouping. The difference to Union-types is that
4261types can be added to a trait after the creation of the trait, whereas Union
4262types are fixed after creation.")
4263 (license license:expat)))
4264
c0f5dd63
EF
4265(define-public julia-sortingalgorithms
4266 (package
4267 (name "julia-sortingalgorithms")
bf796e1b 4268 (version "1.0.1")
c0f5dd63
EF
4269 (source
4270 (origin
4271 (method git-fetch)
4272 (uri (git-reference
4273 (url "https://github.com/JuliaCollections/SortingAlgorithms.jl")
bf796e1b 4274 (commit (string-append "v" version))))
c0f5dd63
EF
4275 (file-name (git-file-name name version))
4276 (sha256
bf796e1b 4277 (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb"))))
c0f5dd63
EF
4278 (build-system julia-build-system)
4279 (arguments
4280 `(#:tests? #f)) ; cycle with StatsBase.jl
4281 (propagated-inputs
4282 `(("julia-datastructures" ,julia-datastructures)))
4283 ;(native-inputs
4284 ; `(("julia-statsbase" ,julia-statsbase)))
4285 (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl")
4286 (synopsis "Extra sorting algorithms extending Julia's sorting API")
4287 (description "The SortingAlgorithms package provides three sorting
4288algorithms that can be used with Julia's standard sorting API: heapsort,
4289timsort and radixsort.")
4290 (license license:expat)))
4291
3d98a16a 4292(define-public julia-specialfunctions
4293 (package
4294 (name "julia-specialfunctions")
22876331 4295 (version "1.6.0")
3d98a16a 4296 (source
4297 (origin
4298 (method git-fetch)
4299 (uri (git-reference
4300 (url "https://github.com/JuliaMath/SpecialFunctions.jl")
4301 (commit (string-append "v" version))))
4302 (file-name (git-file-name name version))
4303 (sha256
22876331 4304 (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0"))))
3d98a16a 4305 (build-system julia-build-system)
4306 (inputs
4307 `(("julia-chainrulestestutils" ,julia-chainrulestestutils)))
4308 (propagated-inputs
4309 `(("julia-chainrulescore" ,julia-chainrulescore)
22876331 4310 ("julia-logexpfunctions" ,julia-logexpfunctions)
3d98a16a 4311 ("julia-openspecfun-jll" ,julia-openspecfun-jll)))
4312 (home-page "https://github.com/JuliaMath/SpecialFunctions.jl")
4313 (synopsis "Special mathematical functions")
4314 (description "This package provides special mathematical functions,
4315including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and
4316cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and
4317polygamma functions.")
8f856c80
EF
4318 (license license:expat)))
4319
4320(define-public julia-splitapplycombine
4321 (package
4322 (name "julia-splitapplycombine")
4323 (version "1.1.4")
4324 (source
4325 (origin
4326 (method git-fetch)
4327 (uri (git-reference
4328 (url "https://github.com/JuliaData/SplitApplyCombine.jl")
4329 (commit (string-append "v" version))))
4330 (file-name (git-file-name name version))
4331 (sha256
4332 (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x"))))
4333 (build-system julia-build-system)
4334 (propagated-inputs
4335 `(("julia-dictionaries" ,julia-dictionaries)
4336 ("julia-indexing" ,julia-indexing)))
4337 (home-page "https://github.com/JuliaData/SplitApplyCombine.jl")
4338 (synopsis "Split-apply-combine strategies for Julia")
4339 (description "@code{SplitApplyCombine.jl} provides high-level, generic tools
4340for manipulating data - particularly focussing on data in nested containers. An
4341emphasis is placed on ensuring split-apply-combine strategies are easy to apply,
4342and work reliably for arbitrary iterables and in an optimized way with the data
4343structures included in Julia's standard library.")
3d98a16a 4344 (license license:expat)))
4345
47f67c56
EF
4346(define-public julia-stablerngs
4347 (package
4348 (name "julia-stablerngs")
4349 (version "1.0.0")
4350 (source
4351 (origin
4352 (method git-fetch)
4353 (uri (git-reference
4354 (url "https://github.com/JuliaRandom/StableRNGs.jl")
4355 (commit (string-append "v" version))))
4356 (file-name (git-file-name name version))
4357 (sha256
4358 (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r"))))
4359 (build-system julia-build-system)
4360 (home-page "https://github.com/JuliaRandom/StableRNGs.jl")
4361 (synopsis "Julia RNG with stable streams")
4362 (description "This package intends to provide a simple RNG with stable
4363streams, suitable for tests in packages which need reproducible streams of
4364random numbers across Julia versions. Indeed, the Julia RNGs provided by
4365default are documented to have non-stable streams (which for example enables
4366some performance improvements).")
4367 (license license:expat)))
4368
e490262f
EF
4369(define-public julia-stackviews
4370 (package
4371 (name "julia-stackviews")
4372 (version "0.1.1")
4373 (source
4374 (origin
4375 (method git-fetch)
4376 (uri (git-reference
4377 (url "https://github.com/JuliaArrays/StackViews.jl")
4378 (commit (string-append "v" version))))
4379 (file-name (git-file-name name version))
4380 (sha256
4381 (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7"))))
4382 (build-system julia-build-system)
4383 (arguments
e6cda550 4384 `(#:phases
e490262f 4385 (modify-phases %standard-phases
3af351a7 4386 (add-after 'link-depot 'skip-doctest
e490262f
EF
4387 (lambda _
4388 (substitute* "test/runtests.jl"
4389 ((".*doctest.*") ""))
4390 #t)))))
4391 (propagated-inputs
4392 `(("julia-offsetarrays" ,julia-offsetarrays)))
e6cda550 4393 (native-inputs
4394 `(("julia-aqua" ,julia-aqua)
4395 ("julia-documenter" ,julia-documenter)))
e490262f
EF
4396 (home-page "https://github.com/JuliaArrays/StackViews.jl")
4397 (synopsis "No more catcat")
4398 (description "StackViews provides only one array type: @code{StackView}.
4399There are multiple ways to understand @code{StackView}:
4400@itemize
4401@item inverse of @code{eachslice}
4402@item @code{cat} variant
4403@item view object
4404@item lazy version of @code{repeat} special case
4405@end itemize")
4406 (license license:expat)))
4407
6496b31a
EF
4408(define-public julia-static
4409 (package
4410 (name "julia-static")
ace03e01 4411 (version "0.3.0")
6496b31a
EF
4412 (source
4413 (origin
4414 (method git-fetch)
4415 (uri (git-reference
4416 (url "https://github.com/SciML/Static.jl")
4417 (commit (string-append "v" version))))
4418 (file-name (git-file-name name version))
4419 (sha256
ace03e01 4420 (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2"))))
6496b31a
EF
4421 (build-system julia-build-system)
4422 (propagated-inputs
4423 `(("julia-ifelse" ,julia-ifelse)))
4424 (native-inputs
4425 `(("julia-aqua" ,julia-aqua)))
4426 (home-page "https://github.com/SciML/Static.jl")
4427 (synopsis "Static types useful for dispatch and generated functions")
4428 (description "Static.jl defines a limited set of statically parameterized
4429types and a common interface that is shared between them.")
4430 (license license:expat)))
4431
be802277 4432(define-public julia-staticarrays
4433 (package
4434 (name "julia-staticarrays")
d6bebca9 4435 (version "1.2.13")
be802277 4436 (source
4437 (origin
4438 (method git-fetch)
4439 (uri (git-reference
4440 (url "https://github.com/JuliaArrays/StaticArrays.jl")
4441 (commit (string-append "v" version))))
4442 (file-name (git-file-name name version))
4443 (sha256
d6bebca9 4444 (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79"))))
be802277 4445 (build-system julia-build-system)
4446 (inputs
4447 `(("julia-benchmarktools" ,julia-benchmarktools)))
4448 (home-page "https://github.com/JuliaArrays/StaticArrays.jl")
4449 (synopsis "Statically sized arrays")
4450 (description "This package provides a framework for implementing
4451statically sized arrays in Julia, using the abstract type
4452@code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of
4453@code{StaticArray} will provide fast implementations of common array and
4454linear algebra operations.")
4455 (license license:expat)))
4456
f7f1efea
EF
4457(define-public julia-statsapi
4458 (package
4459 (name "julia-statsapi")
4460 (version "1.0.0")
4461 (source
4462 (origin
4463 (method git-fetch)
4464 (uri (git-reference
4465 (url "https://github.com/JuliaStats/StatsAPI.jl")
4466 (commit (string-append "v" version))))
4467 (file-name (git-file-name name version))
4468 (sha256
4469 (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv"))))
4470 (build-system julia-build-system)
4471 (home-page "https://juliastats.org/")
4472 (synopsis "Statistics-focused namespace for packages to share functions")
4473 (description "This package provides a namespace for data-related generic
4474function definitions to solve the optional dependency problem; packages wishing
4475to share and/or extend functions can avoid depending directly on each other by
4476moving the function definition to @code{StatsAPI.jl} and each package taking a
4477dependency on it.")
4478 (license license:expat)))
4479
2e317bbf
EF
4480(define-public julia-statsbase
4481 (package
4482 (name "julia-statsbase")
4483 (version "0.33.8")
4484 (source
4485 (origin
4486 (method git-fetch)
4487 (uri (git-reference
4488 (url "https://github.com/JuliaStats/StatsBase.jl")
4489 (commit (string-append "v" version))))
4490 (file-name (git-file-name name version))
4491 (sha256
4492 (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi"))))
4493 (build-system julia-build-system)
4494 (propagated-inputs
4495 `(("julia-dataapi" ,julia-dataapi)
4496 ("julia-datastructures" ,julia-datastructures)
4497 ("julia-missings" ,julia-missings)
4498 ("julia-sortingalgorithms" ,julia-sortingalgorithms)
4499 ("julia-statsapi" ,julia-statsapi)))
4500 (native-inputs
4501 `(("julia-stablerngs" ,julia-stablerngs)))
4502 (home-page "https://github.com/JuliaStats/StatsBase.jl")
4503 (synopsis "Basic statistics for Julia")
4504 (description "StatsBase.jl is a Julia package that provides basic support
4505for statistics. Particularly, it implements a variety of statistics-related
4506functions, such as scalar statistics, high-order moment computation, counting,
4507ranking, covariances, sampling, and empirical density estimation.")
4508 (license license:expat)))
4509
50255943
EF
4510(define-public julia-stringdistances
4511 (package
4512 (name "julia-stringdistances")
4513 (version "0.10.0")
4514 (source
4515 (origin
4516 (method git-fetch)
4517 (uri (git-reference
4518 (url "https://github.com/matthieugomez/StringDistances.jl")
4519 (commit (string-append "v" version))))
4520 (file-name (git-file-name name version))
4521 (sha256
4522 (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7"))))
4523 (build-system julia-build-system)
4524 (propagated-inputs
4525 `(("julia-distances" ,julia-distances)))
4526 (home-page "https://github.com/matthieugomez/StringDistances.jl")
4527 (synopsis "String Distances in Julia")
4528 (description "This package provides string distances in Julia. Distances
4529are defined for @code{AbstractStrings}, and any iterator that define
4530@code{length()}. The package also defines Distance \"modifiers\" that can be
4531applied to any distance.")
4532 (license license:expat)))
4533
03f6a44c
EF
4534(define-public julia-structarrays
4535 (package
4536 (name "julia-structarrays")
4537 (version "0.6.3")
4538 (source
4539 (origin
4540 (method git-fetch)
4541 (uri (git-reference
4542 (url "https://github.com/JuliaArrays/StructArrays.jl")
4543 (commit (string-append "v" version))))
4544 (file-name (git-file-name name version))
4545 (sha256
4546 (base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v"))))
4547 (build-system julia-build-system)
4548 (propagated-inputs
4549 `(("julia-dataapi" ,julia-dataapi)
4550 ("julia-staticarrays" ,julia-staticarrays)
4551 ("julia-tables" ,julia-tables)))
4552 (native-inputs
4553 `(("julia-documenter" ,julia-documenter)
4554 ("julia-offsetarrays" ,julia-offsetarrays)
4555 ("julia-pooledarrays" ,julia-pooledarrays)
4556 ("julia-typedtables" ,julia-typedtables)
4557 ("julia-weakrefstrings" ,julia-weakrefstrings)))
4558 (home-page "https://github.com/JuliaArrays/StructArrays.jl")
4559 (synopsis "Efficient implementation of struct arrays in Julia")
4560 (description "This package introduces the type @code{StructArray} which is
4561an @code{AbstractArray} whose elements are @code{struct} (for example
4562@code{NamedTuples}, or @code{ComplexF64}, or a custom user defined
4563@code{struct}). While a @code{StructArray} iterates @code{structs}, the layout
4564is column based (meaning each field of the @code{struct} is stored in a separate
4565@code{Array}).")
4566 (license license:expat)))
4567
adb3d879
EF
4568(define-public julia-structtypes
4569 (package
4570 (name "julia-structtypes")
4571 (version "1.7.2")
4572 (source
4573 (origin
4574 (method git-fetch)
4575 (uri (git-reference
4576 (url "https://github.com/JuliaData/StructTypes.jl")
4577 (commit (string-append "v" version))))
4578 (file-name (git-file-name name version))
4579 (sha256
4580 (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
4581 (build-system julia-build-system)
4582 (home-page "https://juliadata.github.io/StructTypes.jl/stable/")
4583 (synopsis "Abstract definitions and convenience methods for Julia objects")
4584 (description "This package provides the @code{StructTypes.StructType} trait
4585for Julia types to declare the kind of \"struct\" they are, providing
4586serialization/deserialization packages patterns and strategies to automatically
4587construct objects.")
4588 (license license:expat)))
4589
ef9a5521
EF
4590(define-public julia-suppressor
4591 (package
4592 (name "julia-suppressor")
4593 (version "0.2.0")
4594 (source
4595 (origin
4596 (method git-fetch)
4597 (uri (git-reference
4598 (url "https://github.com/JuliaIO/Suppressor.jl")
4599 (commit (string-append "v" version))))
4600 (file-name (git-file-name name version))
4601 (sha256
4602 (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc"))))
4603 (build-system julia-build-system)
4604 (home-page "https://github.com/JuliaIO/Suppressor.jl")
4605 (synopsis "Capture stdout and sterr")
4606 (description "Julia macros for suppressing and/or capturing output (stdout),
4607warnings (stderr) or both streams at the same time.")
4608 (license license:expat)))
4609
40a7da2b
EF
4610(define-public julia-tableiointerface
4611 (package
4612 (name "julia-tableiointerface")
4613 (version "0.1.6")
4614 (source
4615 (origin
4616 (method git-fetch)
4617 (uri (git-reference
4618 (url "https://github.com/lungben/TableIOInterface.jl")
4619 (commit (string-append "v" version))))
4620 (file-name (git-file-name name version))
4621 (sha256
4622 (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn"))))
4623 (build-system julia-build-system)
4624 (home-page "https://github.com/lungben/TableIOInterface.jl")
4625 (synopsis "File formats based on file extensions")
4626 (description "This package determines tabular file formats based on file
4627extensions. It is intended to be the base both for @code{TableIO.jl} and for
4628the @code{Pluto.jl} tabular data import functionality.")
4629 (license license:expat)))
4630
2bd2406c
EF
4631(define-public julia-tables
4632 (package
4633 (name "julia-tables")
9fe69d78 4634 (version "1.4.4")
2bd2406c
EF
4635 (source
4636 (origin
4637 (method git-fetch)
4638 (uri (git-reference
4639 (url "https://github.com/JuliaData/Tables.jl")
4640 (commit (string-append "v" version))))
4641 (file-name (git-file-name name version))
4642 (sha256
9fe69d78 4643 (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb"))))
2bd2406c
EF
4644 (build-system julia-build-system)
4645 (propagated-inputs
4646 `(("julia-dataapi" ,julia-dataapi)
4647 ("julia-datavalueinterfaces" ,julia-datavalueinterfaces)
4648 ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)
4649 ("julia-tabletraits" ,julia-tabletraits)))
4650 (native-inputs
4651 `(("julia-datavalues" ,julia-datavalues)
4652 ("julia-queryoperators" ,julia-queryoperators)))
4653 (home-page "https://github.com/JuliaData/Tables.jl")
4654 (synopsis "Interface for tables in Julia")
4655 (description "The @code{Tables.jl} package provides simple, yet powerful
4656interface functions for working with all kinds tabular data.")
4657 (license license:expat)))
4658
a61e13f7
EF
4659(define-public julia-tableshowutils
4660 ;; The 0.2.5 release is not fully compatable with newer versions of Julia.
4661 (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460")
4662 (revision "1"))
4663 (package
4664 (name "julia-tableshowutils")
4665 (version "0.2.5")
4666 (source
4667 (origin
4668 (method git-fetch)
4669 (uri (git-reference
4670 (url "https://github.com/queryverse/TableShowUtils.jl")
4671 (commit commit)))
4672 (file-name (git-file-name name version))
4673 (sha256
4674 (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5"))))
4675 (build-system julia-build-system)
4676 (propagated-inputs
4677 `(("julia-datavalues" ,julia-datavalues)
4678 ("julia-json" ,julia-json)))
4679 (home-page "https://github.com/queryverse/TableShowUtils.jl")
4680 (synopsis "Implement show for TableTraits.jl types")
4681 (description "This package provides some common helper functions that make
4682it easier to implement various @code{Base.show} functions for types that
4683participate in the @code{TableTraits.jl} ecosystem.")
4684 (license license:expat))))
4685
3f40ba72
EF
4686(define-public julia-tabletraits
4687 (package
4688 (name "julia-tabletraits")
4689 (version "1.0.1")
4690 (source
4691 (origin
4692 (method git-fetch)
4693 (uri (git-reference
4694 (url "https://github.com/queryverse/TableTraits.jl")
4695 (commit (string-append "v" version))))
4696 (file-name (git-file-name name version))
4697 (sha256
4698 (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4"))))
4699 (build-system julia-build-system)
4700 (propagated-inputs
4701 `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions)))
4702 (home-page "https://github.com/queryverse/TableTraits.jl")
4703 (synopsis "Traits for Julia tables")
4704 (description "TableTraits defines a generic interface for tabular data.")
4705 (license license:expat)))
4706
6a2d36c7
EF
4707(define-public julia-tensorcore
4708 (package
4709 (name "julia-tensorcore")
4710 (version "0.1.1")
4711 (source
4712 (origin
4713 (method git-fetch)
4714 (uri (git-reference
4715 (url "https://github.com/JuliaMath/TensorCore.jl")
4716 (commit (string-append "v" version))))
4717 (file-name (git-file-name name version))
4718 (sha256
4719 (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy"))))
4720 (build-system julia-build-system)
4721 (home-page "https://github.com/JuliaMath/TensorCore.jl")
4722 (synopsis "Tensor-algebra definitions")
4723 (description "This package is intended as a lightweight foundation for
4724tensor operations across the Julia ecosystem. Currently it exports three
4725operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor,
4726product preserves all dimensions}, and @acronym{boxdot, contracts neighboring
4727dimensions}.")
4728 (license license:expat)))
4729
6ddeadba
EF
4730(define-public julia-testimages
4731 (package
4732 (name "julia-testimages")
4733 (version "1.5.0")
4734 (source
4735 (origin
4736 (method git-fetch)
4737 (uri (git-reference
4738 (url "https://github.com/JuliaImages/TestImages.jl")
4739 (commit (string-append "v" version))))
4740 (file-name (git-file-name name version))
4741 (sha256
4742 (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy"))))
4743 (build-system julia-build-system)
4744 (arguments
4745 `(#:tests? #f)) ; cycle with ImageMagick.jl
4746 (propagated-inputs
4747 `(("julia-axisarrays" ,julia-axisarrays)
4748 ("julia-colortypes" ,julia-colortypes)
4749 ("julia-fileio" ,julia-fileio)
4750 ("julia-offsetarrays" ,julia-offsetarrays)
4751 ("julia-stringdistances" ,julia-stringdistances)))
4752 ;(native-inputs
4753 ; `(("julia-colors" ,julia-colors)
4754 ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
4755 ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment)
4756 ; ("julia-imagemagick" ,julia-imagemagick)
4757 ; ("julia-ometiff" ,julia-ometiff)
4758 ; ("julia-referencetests" ,julia-referencetests)))
4759 (home-page "https://testimages.juliaimages.org/")
4760 (synopsis "Standard test images for Julia")
4761 (description "This package provides a convenient Julia interface for loading
4762standard named test images and example images for the internal usage in
4763@code{JuliaImages}. This can be used in conjunction with the @code{Images}
4764package.")
4765 (license license:expat)))
4766
916c2669
EF
4767(define-public julia-tracker
4768 (package
4769 (name "julia-tracker")
4770 (version "0.2.12")
4771 (source
4772 (origin
4773 (method git-fetch)
4774 (uri (git-reference
4775 (url "https://github.com/FluxML/Tracker.jl")
4776 (commit (string-append "v" version))))
4777 (file-name (git-file-name name version))
4778 (sha256
7975a64b
EF
4779 (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j"))
4780 (patches (search-patches "julia-tracker-16-compat.patch"))))
916c2669
EF
4781 (build-system julia-build-system)
4782 (propagated-inputs
4783 `(("julia-adapt" ,julia-adapt)
4784 ("julia-diffrules" ,julia-diffrules)
4785 ("julia-forwarddiff" ,julia-forwarddiff)
4786 ("julia-macrotools" ,julia-macrotools)
4787 ("julia-nanmath" ,julia-nanmath)
4788 ("julia-nnlib" ,julia-nnlib)
4789 ("julia-requires" ,julia-requires)
4790 ("julia-specialfunctions" ,julia-specialfunctions)))
4791 (native-inputs
4792 `(("julia-pdmats" ,julia-pdmats)))
4793 (home-page "https://github.com/FluxML/Tracker.jl")
4794 (synopsis "Operator overloading reverse-mode automatic differentiator")
4795 (description "@code{Tracker.jl} previously provided @code{Flux.jl} with
4796automatic differentiation for its machine learning platform.")
4797 (license license:expat)))
4798
dfd7e821 4799(define-public julia-transcodingstreams
4800 (package
4801 (name "julia-transcodingstreams")
4802 (version "0.9.6")
4803 (source
4804 (origin
4805 (method git-fetch)
4806 (uri (git-reference
4807 (url "https://github.com/JuliaIO/TranscodingStreams.jl")
4808 (commit (string-append "v" version))))
4809 (file-name (git-file-name name version))
4810 (sha256
4811 (base32 "1w3klii293caqiclfh28jggv7f53xclm9fr6xmw38brwrn1hjb48"))))
4812 (build-system julia-build-system)
4813 (arguments
4814 `(#:tests? #f)) ; Circular dependency with various codecs.
4815 (home-page "https://github.com/JuliaIO/TranscodingStreams.jl")
4816 (synopsis "Fast I/O transcoding data streams")
4817 (description "This package provides tools for transcoding data streams
4818which are:
4819@itemize
4820@item fast: small overhead and specialized methods
4821@item consistent: basic I/O operations work as expected
4822@item generic: support any I/O objects like files, buffers, pipes, etc.
4823@item extensible: easy definition for new codec to transcode data
4824@end itemize")
4825 (license license:expat)))
4826
adedfd07
EF
4827(define-public julia-typedtables
4828 (package
4829 (name "julia-typedtables")
6bf32d13 4830 (version "1.4.0")
adedfd07
EF
4831 (source
4832 (origin
4833 (method git-fetch)
4834 (uri (git-reference
4835 (url "https://github.com/JuliaData/TypedTables.jl")
4836 (commit (string-append "v" version))))
4837 (file-name (git-file-name name version))
4838 (sha256
6bf32d13 4839 (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i"))))
adedfd07
EF
4840 (build-system julia-build-system)
4841 (propagated-inputs
4842 `(("julia-adapt" ,julia-adapt)
4843 ("julia-splitapplycombine" ,julia-splitapplycombine)
4844 ("julia-tables" ,julia-tables)))
4845 (home-page "https://github.com/JuliaData/TypedTables.jl")
4846 (synopsis "Column-based storage for data analysis in Julia")
4847 (description "@code{TypedTables.jl} provides two column-based storage
4848containers: @code{Table} and @code{FlexTable}, both of which represent an array
4849of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use
4850and fast, and presents a very minimal new interface to learn.")
4851 (license license:expat)))
4852
c1f7692f
EF
4853(define-public julia-unpack
4854 (package
4855 (name "julia-unpack")
4856 (version "1.0.2")
4857 (source
4858 (origin
4859 (method git-fetch)
4860 (uri (git-reference
4861 (url "https://github.com/mauro3/UnPack.jl")
4862 (commit (string-append "v" version))))
4863 (file-name (git-file-name name version))
4864 (sha256
4865 (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a"))))
4866 (build-system julia-build-system)
4867 (home-page "https://github.com/mauro3/UnPack.jl")
4868 (synopsis "Pack and Unpack macros for Julia")
4869 (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack
4870types, modules, and dictionaries.")
4871 (license license:expat)))
4872
8f59a9fb 4873(define-public julia-uris
4874 (package
4875 (name "julia-uris")
8af35997 4876 (version "1.3.0")
8f59a9fb 4877 (source
4878 (origin
4879 (method git-fetch)
4880 (uri (git-reference
4881 (url "https://github.com/JuliaWeb/URIs.jl")
4882 (commit (string-append "v" version))))
4883 (file-name (git-file-name name version))
4884 (sha256
8af35997 4885 (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92"))))
8f59a9fb 4886 (build-system julia-build-system)
4887 (arguments
4888 '(#:julia-package-name "URIs" ;required to run tests
3af351a7 4889 #:julia-package-uuid "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
8f59a9fb 4890 #:phases
4891 (modify-phases %standard-phases
4892 (add-before 'check 'change-dir
4893 ;; Tests must be run from the testdir
4894 (lambda* (#:key source outputs #:allow-other-keys)
4895 (let ((out (assoc-ref outputs "out")))
4896 (chdir
3af351a7 4897 (string-append out "/share/julia/loadpath/URIs/test")))
8f59a9fb 4898 #t)))))
4899 ;; required for tests
4900 (inputs `(("julia-json" ,julia-json)))
4901 (home-page "https://github.com/JuliaWeb/URIs.jl")
4902 (synopsis "URI parsing in Julia")
4903 (description "@code{URIs.jl} is a Julia package that allows parsing and
4904working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC
49053986.")
4906 (license license:expat)))
a8e3be6a 4907
4908(define-public julia-unitful
4909 (package
4910 (name "julia-unitful")
f6bc4657 4911 (version "1.9.0")
a8e3be6a 4912 (source
4913 (origin
4914 (method git-fetch)
4915 (uri (git-reference
4916 (url "https://github.com/PainterQubits/Unitful.jl")
4917 (commit (string-append "v" version))))
4918 (file-name (git-file-name name version))
4919 (sha256
f6bc4657 4920 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq"))))
a8e3be6a 4921 (build-system julia-build-system)
9b48948a 4922 (arguments
4923 `(#:parallel-tests? #f))
a8e3be6a 4924 (propagated-inputs
4925 `(("julia-constructionbase" ,julia-constructionbase)))
4926 (home-page "https://painterqubits.github.io/Unitful.jl/stable/")
4927 (synopsis "Physical units in Julia")
4928 (description "This package supports SI units and also many other unit
4929system.")
4930 (license license:expat)))
568cebc2 4931
34ab622d
EF
4932(define-public julia-versionparsing
4933 (package
4934 (name "julia-versionparsing")
4935 (version "1.2.0")
4936 (source
4937 (origin
4938 (method git-fetch)
4939 (uri (git-reference
4940 (url "https://github.com/JuliaInterop/VersionParsing.jl")
4941 (commit (string-append "v" version))))
4942 (file-name (git-file-name name version))
4943 (sha256
4944 (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva"))))
4945 (build-system julia-build-system)
4946 (home-page "https://github.com/JuliaInterop/VersionParsing.jl")
4947 (synopsis "Flexible VersionNumber parsing in Julia")
4948 (description "The @code{VersionParsing} package implements flexible parsing
4949of version-number strings into Julia's built-in @code{VersionNumber} type, via
4950the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)}
4951constructor, @code{vparse(string)} can handle version-number strings in a much
4952wider range of formats than are encompassed by the semver standard. This is
4953useful in order to support @code{VersionNumber} comparisons applied to
4954\"foreign\" version numbers from external packages.")
4955 (license license:expat)))
4956
f34f8a3d
EF
4957(define-public julia-weakrefstrings
4958 (package
4959 (name "julia-weakrefstrings")
4707ab2f 4960 (version "1.1.0")
f34f8a3d
EF
4961 (source
4962 (origin
4963 (method git-fetch)
4964 (uri (git-reference
4965 (url "https://github.com/JuliaData/WeakRefStrings.jl")
4966 (commit (string-append "v" version))))
4967 (file-name (git-file-name name version))
4968 (sha256
4707ab2f 4969 (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219"))))
f34f8a3d
EF
4970 (build-system julia-build-system)
4971 (propagated-inputs
51ef08e5
EF
4972 `(("julia-dataapi" ,julia-dataapi)
4973 ("julia-parsers" ,julia-parsers)))
f34f8a3d
EF
4974 (home-page "https://github.com/JuliaData/WeakRefStrings.jl")
4975 (synopsis "Efficient string representation and transfer in Julia")
4976 (description "This package provides a minimal String type for Julia that
4977allows for efficient string representation and transfer")
4978 (license license:expat)))
4979
20b79fed
EF
4980(define-public julia-woodburymatrices
4981 (package
4982 (name "julia-woodburymatrices")
4983 (version "0.5.3")
4984 (source
4985 (origin
4986 (method git-fetch)
4987 (uri (git-reference
4988 (url "https://github.com/timholy/WoodburyMatrices.jl")
4989 (commit (string-append "v" version))))
4990 (file-name (git-file-name name version))
4991 (sha256
4992 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd"))))
4993 (build-system julia-build-system)
4994 (home-page "https://github.com/timholy/WoodburyMatrices.jl")
4995 (synopsis "Support for the Woodbury matrix identity for Julia")
4996 (description "This package provides support for the Woodbury matrix identity
4997for the Julia programming language. This is a generalization of the
4998Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious
4999for floating-point roundoff errors, so be prepared for a certain amount of
5000inaccuracy in the result.")
5001 (license license:expat)))
5002
ddcc5d43
EF
5003(define-public julia-zipfile
5004 (package
5005 (name "julia-zipfile")
5006 (version "0.9.3")
5007 (source
5008 (origin
5009 (method git-fetch)
5010 (uri (git-reference
5011 (url "https://github.com/fhs/ZipFile.jl")
5012 (commit (string-append "v" version))))
5013 (file-name (git-file-name name version))
5014 (sha256
5015 (base32
5016 "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k"))))
5017 (build-system julia-build-system)
5018 (propagated-inputs
5019 `(("julia-zlib-jll" ,julia-zlib-jll)))
5020 (home-page "https://github.com/fhs/ZipFile.jl")
5021 (synopsis "Read/Write ZIP archives in Julia")
5022 (description "This module provides support for reading and writing ZIP
5023archives in Julia.")
5024 (license license:expat)))
5025
568cebc2 5026(define-public julia-zygoterules
5027 (package
5028 (name "julia-zygoterules")
5029 (version "0.2.1")
5030 (source
5031 (origin
5032 (method git-fetch)
5033 (uri (git-reference
5034 (url "https://github.com/FluxML/ZygoteRules.jl")
5035 (commit (string-append "v" version))))
5036 (file-name (git-file-name name version))
5037 (sha256
5038 (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs"))))
5039 (build-system julia-build-system)
5040 (propagated-inputs
5041 `(("julia-macrotools" ,julia-macrotools)))
5042 (home-page "https://github.com/FluxML/ZygoteRules.jl")
5043 (synopsis "Add minimal custom gradients to Zygote")
5044 (description "Minimal package which enables to add custom gradients to
5045Zygote, without depending on Zygote itself.")
5046 (license license:expat)))
13f7f06c 5047
5048(define-public julia-zygote
5049 (package
5050 (name "julia-zygote")
8d787994 5051 (version "0.6.17")
13f7f06c 5052 (source
5053 (origin
5054 (method git-fetch)
5055 (uri (git-reference
5056 (url "https://github.com/FluxML/Zygote.jl")
5057 (commit (string-append "v" version))))
5058 (file-name (git-file-name name version))
5059 (sha256
8d787994 5060 (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b"))))
13f7f06c 5061 (build-system julia-build-system)
5062 (arguments
5063 `(#:tests? #f)) ;require CUDA, not packaged yet
5064 (propagated-inputs
5065 `(("julia-abstractffs" ,julia-abstractffts)
5066 ("julia-chainrules" ,julia-chainrules)
5067 ("julia-diffrules" ,julia-diffrules)
5068 ("julia-fillarrays" ,julia-fillarrays)
5069 ("julia-forwarddiff" ,julia-forwarddiff)
5070 ("julia-irtools" ,julia-irtools)
5071 ("julia-macrotools" ,julia-macrotools)
5072 ("julia-nanmath" ,julia-nanmath)
5073 ("julia-requires" ,julia-requires)
5074 ("julia-specialfunctions" ,julia-specialfunctions)
5075 ("julia-zygote-rules" ,julia-zygoterules)))
5076 (home-page "https://fluxml.ai/Zygote.jl")
5077 (synopsis "Automatic differentiation in Julia")
5078 (description "Zygote provides source-to-source automatic
5079differentiation (AD) in Julia, and is the next-generation AD system for the
5080Flux differentiable programming framework.")
5081 (license license:expat)))