Commit | Line | Data |
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a1315b7f | 1 | ;;; GNU Guix --- Functional package management for GNU |
f7a98af0 | 2 | ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz> |
35044d3e | 3 | ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com> |
69b13cd4 | 4 | ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il> |
9cc167fe | 5 | ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net> |
a1315b7f | 6 | ;;; |
7 | ;;; This file is part of GNU Guix. | |
8 | ;;; | |
9 | ;;; GNU Guix is free software; you can redistribute it and/or modify it | |
10 | ;;; under the terms of the GNU General Public License as published by | |
11 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
12 | ;;; your option) any later version. | |
13 | ;;; | |
14 | ;;; GNU Guix is distributed in the hope that it will be useful, but | |
15 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
17 | ;;; GNU General Public License for more details. | |
18 | ;;; | |
19 | ;;; You should have received a copy of the GNU General Public License | |
20 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. | |
21 | ||
22 | (define-module (gnu packages julia-xyz) | |
23 | #:use-module ((guix licenses) #:prefix license:) | |
7975a64b | 24 | #:use-module (gnu packages) |
7b59508c | 25 | #:use-module (guix utils) |
a1315b7f | 26 | #:use-module (guix packages) |
27 | #:use-module (guix git-download) | |
3291e4ba | 28 | #:use-module (guix build-system julia) |
277fef20 | 29 | #:use-module (gnu packages gcc) |
3893f136 EF |
30 | #:use-module (gnu packages julia-jll) |
31 | #:use-module (gnu packages python) | |
7b59508c EF |
32 | #:use-module (gnu packages python-xyz) |
33 | #:use-module (gnu packages version-control)) | |
a1315b7f | 34 | |
651a5573 | 35 | (define-public julia-abstractffts |
36 | (package | |
37 | (name "julia-abstractffts") | |
38 | (version "1.0.1") | |
39 | (source | |
40 | (origin | |
41 | (method git-fetch) | |
42 | (uri (git-reference | |
43 | (url "https://github.com/JuliaMath/AbstractFFTS.jl") | |
44 | (commit (string-append "v" version)))) | |
45 | (file-name (git-file-name name version)) | |
46 | (sha256 | |
47 | (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0")))) | |
48 | (build-system julia-build-system) | |
49 | (inputs ;required for tests | |
50 | `(("julia-unitful" ,julia-unitful))) | |
51 | (home-page "https://github.com/JuliaGPU/Adapt.jl") | |
52 | (synopsis "General framework for fast Fourier transforms (FFTs)") | |
53 | (description "This package allows multiple FFT packages to co-exist with | |
54 | the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is | |
55 | mainly not intended to be used directly. Instead, developers of packages that | |
56 | implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the | |
57 | types/functions defined in AbstractFFTs.") | |
58 | (license license:expat))) | |
59 | ||
64c1c497 | 60 | (define-public julia-abstracttrees |
61 | (package | |
62 | (name "julia-abstracttrees") | |
63 | (version "0.3.4") | |
64 | (source | |
65 | (origin | |
66 | (method git-fetch) | |
67 | (uri (git-reference | |
68 | (url "https://github.com/JuliaCollections/AbstractTrees.jl") | |
69 | (commit (string-append "v" version)))) | |
70 | (file-name (git-file-name name version)) | |
71 | (sha256 | |
72 | (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8")))) | |
73 | (build-system julia-build-system) | |
74 | (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/") | |
75 | (synopsis "Abstract Julia interfaces for working with trees") | |
76 | (description "This Julia package provides several utilities for working | |
77 | with tree-like data structures. Most importantly, it defines the | |
78 | @code{children} method that any package that contains such a data structure | |
79 | may import and extend in order to take advantage of any generic tree algorithm | |
80 | in this package.") | |
81 | (license license:expat))) | |
82 | ||
20767b9b | 83 | (define-public julia-adapt |
84 | (package | |
85 | (name "julia-adapt") | |
963ae006 | 86 | (version "3.3.1") |
20767b9b | 87 | (source |
88 | (origin | |
89 | (method git-fetch) | |
90 | (uri (git-reference | |
91 | (url "https://github.com/JuliaGPU/Adapt.jl") | |
92 | (commit (string-append "v" version)))) | |
81d45a66 | 93 | (file-name (git-file-name name version)) |
20767b9b | 94 | (sha256 |
963ae006 | 95 | (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7")))) |
20767b9b | 96 | (build-system julia-build-system) |
97 | (home-page "https://github.com/JuliaGPU/Adapt.jl") | |
98 | (synopsis "Package providing the @code{adapt} function, similar to @code{convert}") | |
99 | (description "This Julia package provides the @code{adapt(T, x)} function | |
100 | acts like @code{convert(T, x)}, but without the restriction of returning a | |
101 | @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to | |
102 | be GPU compatible without throwing away the wrapper.") | |
103 | (license license:expat))) | |
104 | ||
60d3484f EF |
105 | (define-public julia-ansicoloredprinters |
106 | (package | |
107 | (name "julia-ansicoloredprinters") | |
108 | (version "0.0.1") | |
109 | (source | |
110 | (origin | |
111 | (method git-fetch) | |
112 | (uri (git-reference | |
113 | (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl") | |
114 | (commit (string-append "v" version)))) | |
115 | (file-name (git-file-name name version)) | |
116 | (sha256 | |
117 | (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf")))) | |
118 | (build-system julia-build-system) | |
119 | (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl") | |
120 | (synopsis "ANSI escape code translator") | |
121 | (description "@code{ANSIColoredPrinters.jl} converts a text qualified by | |
122 | ANSI escape codes to another format.") | |
123 | (license license:expat))) | |
124 | ||
130c13c8 EF |
125 | (define-public julia-aqua |
126 | (package | |
127 | (name "julia-aqua") | |
f126ac00 | 128 | (version "0.5.1") |
130c13c8 EF |
129 | (source |
130 | (origin | |
131 | (method git-fetch) | |
132 | (uri (git-reference | |
133 | (url "https://github.com/JuliaTesting/Aqua.jl") | |
134 | (commit (string-append "v" version)))) | |
135 | (file-name (git-file-name name version)) | |
136 | (sha256 | |
f126ac00 | 137 | (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk")))) |
130c13c8 EF |
138 | (build-system julia-build-system) |
139 | (home-page "https://github.com/JuliaTesting/Aqua.jl") | |
140 | (synopsis "Automated quality assurance for Julia packages") | |
141 | (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages}, | |
142 | provides functions to run a few automatable checks for Julia packages.") | |
143 | (license license:expat))) | |
144 | ||
ef159514 EF |
145 | (define-public julia-arrayinterface |
146 | (package | |
147 | (name "julia-arrayinterface") | |
70671112 | 148 | (version "3.1.19") |
ef159514 EF |
149 | (source |
150 | (origin | |
151 | (method git-fetch) | |
152 | (uri (git-reference | |
153 | (url "https://github.com/JuliaArrays/ArrayInterface.jl") | |
154 | (commit (string-append "v" version)))) | |
155 | (file-name (git-file-name name version)) | |
156 | (sha256 | |
70671112 | 157 | (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33")))) |
ef159514 EF |
158 | (build-system julia-build-system) |
159 | (propagated-inputs | |
160 | `(("julia-ifelse" ,julia-ifelse) | |
161 | ("julia-requires" ,julia-requires) | |
162 | ("julia-static" ,julia-static))) | |
163 | (native-inputs | |
164 | `(("julia-aqua" ,julia-aqua) | |
165 | ("julia-bandedmatrices" ,julia-bandedmatrices) | |
166 | ("julia-blockbandedmatrices" ,julia-blockbandedmatrices) | |
167 | ("julia-ifelse" ,julia-ifelse) | |
168 | ("julia-offsetarrays" ,julia-offsetarrays) | |
169 | ("julia-staticarrays" ,julia-staticarrays))) | |
170 | (home-page "https://github.com/JuliaArrays/ArrayInterface.jl") | |
171 | (synopsis "Base array interface primitives") | |
172 | (description "The purpose of this library is to solidify extensions to the | |
173 | current @code{AbstractArray} interface, which are put to use in package | |
174 | ecosystems like @code{DifferentialEquations.jl}. Since these libraries are | |
175 | live, this package will serve as a staging ground for ideas before they are | |
176 | merged into Base Julia. For this reason, no functionality is exported so that | |
177 | if such functions are added and exported in a future Base Julia, there will be | |
178 | no issues with the upgrade.") | |
179 | (license license:expat))) | |
180 | ||
6dd2634d EF |
181 | (define-public julia-arraylayouts |
182 | (package | |
183 | (name "julia-arraylayouts") | |
20246050 | 184 | (version "0.7.6") |
6dd2634d EF |
185 | (source |
186 | (origin | |
187 | (method git-fetch) | |
188 | (uri (git-reference | |
189 | (url "https://github.com/JuliaMatrices/ArrayLayouts.jl") | |
190 | (commit (string-append "v" version)))) | |
191 | (file-name (git-file-name name version)) | |
192 | (sha256 | |
20246050 | 193 | (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg")))) |
6dd2634d EF |
194 | (build-system julia-build-system) |
195 | (propagated-inputs | |
196 | `(("julia-fillarrays" ,julia-fillarrays))) | |
197 | (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl") | |
198 | (synopsis "Array layouts and general fast linear algebra") | |
199 | (description "This package implements a trait-based framework for describing | |
200 | array layouts such as column major, row major, etc. that can be dispatched to | |
201 | appropriate BLAS or optimised Julia linear algebra routines. This supports a | |
202 | much wider class of matrix types than Julia's in-built @code{StridedArray}.") | |
203 | (license license:expat))) | |
3fed0af9 EF |
204 | |
205 | (define-public julia-axisalgorithms | |
206 | (package | |
207 | (name "julia-axisalgorithms") | |
208 | (version "1.0.0") | |
209 | (source | |
210 | (origin | |
211 | (method git-fetch) | |
212 | (uri (git-reference | |
213 | (url "https://github.com/timholy/AxisAlgorithms.jl") | |
214 | (commit (string-append "v" version)))) | |
215 | (file-name (git-file-name name version)) | |
216 | (sha256 | |
217 | (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk")))) | |
218 | (build-system julia-build-system) | |
219 | (propagated-inputs | |
220 | `(("julia-woodburymatrices" ,julia-woodburymatrices))) | |
221 | (home-page "https://github.com/timholy/AxisAlgorithms.jl") | |
222 | (synopsis "Filtering and linear algebra routines for multidimensional arrays") | |
223 | (description "@code{AxisAlgorithms} is a collection of filtering and linear | |
224 | algebra algorithms for multidimensional arrays. For algorithms that would | |
225 | typically apply along the columns of a matrix, you can instead pick an arbitrary | |
226 | axis (dimension).") | |
227 | (license license:expat))) | |
6dd2634d | 228 | |
cb66e4ae EF |
229 | (define-public julia-axisarrays |
230 | (package | |
231 | (name "julia-axisarrays") | |
af369949 | 232 | (version "0.4.4") |
cb66e4ae EF |
233 | (source |
234 | (origin | |
235 | (method git-fetch) | |
236 | (uri (git-reference | |
237 | (url "https://github.com/JuliaArrays/AxisArrays.jl") | |
238 | (commit (string-append "v" version)))) | |
239 | (file-name (git-file-name name version)) | |
240 | (sha256 | |
af369949 | 241 | (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk")))) |
cb66e4ae EF |
242 | (build-system julia-build-system) |
243 | (propagated-inputs | |
244 | `(("julia-rangearrays" ,julia-rangearrays) | |
245 | ("julia-intervalsets" ,julia-intervalsets) | |
246 | ("julia-itertools" ,julia-itertools))) | |
247 | (native-inputs | |
248 | `(("julia-offsetarrays" ,julia-offsetarrays) | |
249 | ("julia-unitful" ,julia-unitful))) | |
250 | (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/") | |
251 | (synopsis "Arrays where each dimension can have a named axis with values") | |
252 | (description "This package for the Julia language provides an array type | |
253 | (the AxisArray) that knows about its dimension names and axis values. This | |
254 | allows for indexing by name without incurring any runtime overhead. This | |
255 | permits one to implement algorithms that are oblivious to the storage order of | |
256 | the underlying arrays. AxisArrays can also be indexed by the values along their | |
257 | axes, allowing column names or interval selections.") | |
258 | (license license:expat))) | |
259 | ||
48b9f37a EF |
260 | (define-public julia-bandedmatrices |
261 | (package | |
262 | (name "julia-bandedmatrices") | |
5d45f7b1 | 263 | (version "0.16.10") |
48b9f37a EF |
264 | (source |
265 | (origin | |
266 | (method git-fetch) | |
267 | (uri (git-reference | |
268 | (url "https://github.com/JuliaMatrices/BandedMatrices.jl") | |
269 | (commit (string-append "v" version)))) | |
270 | (file-name (git-file-name name version)) | |
271 | (sha256 | |
5d45f7b1 | 272 | (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism")))) |
48b9f37a EF |
273 | (build-system julia-build-system) |
274 | (propagated-inputs | |
275 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
276 | ("julia-fillarrays" ,julia-fillarrays))) | |
277 | (native-inputs | |
278 | `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra))) | |
279 | (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl") | |
280 | (synopsis "Julia package for representing banded matrices") | |
281 | (description "This package supports representing banded matrices by only | |
282 | the entries on the bands.") | |
283 | (license license:expat))) | |
284 | ||
03010d5d | 285 | (define-public julia-benchmarktools |
286 | (package | |
287 | (name "julia-benchmarktools") | |
ad8c4040 | 288 | (version "1.1.1") |
03010d5d | 289 | (source |
290 | (origin | |
291 | (method git-fetch) | |
292 | (uri (git-reference | |
293 | (url "https://github.com/JuliaCI/BenchmarkTools.jl") | |
294 | (commit (string-append "v" version)))) | |
295 | (file-name (git-file-name name version)) | |
296 | (sha256 | |
ad8c4040 | 297 | (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8")))) |
03010d5d | 298 | (build-system julia-build-system) |
299 | (propagated-inputs `(("julia-json" ,julia-json))) | |
300 | (home-page "https://github.com/JuliaCI/BenchmarkTools.jl") | |
301 | (synopsis "Benchmarking framework for the Julia language") | |
302 | (description "@code{BenchmarkTools.jl} makes performance tracking of Julia | |
303 | code easy by supplying a framework for writing and running groups of | |
304 | benchmarks as well as comparing benchmark results.") | |
305 | (license license:expat))) | |
306 | ||
567fa057 EF |
307 | (define-public julia-blockarrays |
308 | (package | |
309 | (name "julia-blockarrays") | |
d0381960 | 310 | (version "0.16.8") |
567fa057 EF |
311 | (source |
312 | (origin | |
313 | (method git-fetch) | |
314 | (uri (git-reference | |
315 | (url "https://github.com/JuliaArrays/BlockArrays.jl") | |
316 | (commit (string-append "v" version)))) | |
317 | (file-name (git-file-name name version)) | |
318 | (sha256 | |
d0381960 | 319 | (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1")))) |
567fa057 EF |
320 | (build-system julia-build-system) |
321 | (propagated-inputs | |
322 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
323 | ("julia-fillarrays" ,julia-fillarrays))) | |
324 | (native-inputs | |
325 | `(("julia-lazyarrays" ,julia-lazyarrays) | |
326 | ("julia-offsetarrays" ,julia-offsetarrays) | |
327 | ("julia-staticarrays" ,julia-staticarrays))) | |
328 | (home-page "https://github.com/JuliaArrays/BlockArrays.jl") | |
329 | (synopsis "BlockArrays for Julia") | |
330 | (description "A block array is a partition of an array into blocks or | |
331 | subarrays. This package has two purposes. Firstly, it defines an interface for | |
332 | an @code{AbstractBlockArray} block arrays that can be shared among types | |
333 | representing different types of block arrays. The advantage to this is that it | |
334 | provides a consistent API for block arrays. | |
335 | Secondly, it also implements two different type of block arrays that follow the | |
336 | @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each | |
337 | block contiguously while the type @code{PseudoBlockArray} stores the full matrix | |
338 | contiguously. This means that @code{BlockArray} supports fast non copying | |
339 | extraction and insertion of blocks while @code{PseudoBlockArray} supports fast | |
340 | access to the full matrix to use in in for example a linear solver.") | |
341 | (license license:expat))) | |
342 | ||
30699854 EF |
343 | (define-public julia-blockbandedmatrices |
344 | (package | |
345 | (name "julia-blockbandedmatrices") | |
b5df9174 | 346 | (version "0.10.7") |
30699854 EF |
347 | (source |
348 | (origin | |
349 | (method git-fetch) | |
350 | (uri (git-reference | |
351 | (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl") | |
352 | (commit (string-append "v" version)))) | |
353 | (file-name (git-file-name name version)) | |
354 | (sha256 | |
b5df9174 | 355 | (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9")))) |
30699854 EF |
356 | (build-system julia-build-system) |
357 | (propagated-inputs | |
358 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
359 | ("julia-bandedmatrices" ,julia-bandedmatrices) | |
360 | ("julia-blockarrays" ,julia-blockarrays) | |
361 | ("julia-fillarrays" ,julia-fillarrays) | |
362 | ("julia-matrixfactorizations" ,julia-matrixfactorizations))) | |
363 | (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl") | |
364 | (synopsis "Block-banded matrices and banded-block-banded matrices") | |
365 | (description "This package supports representing block-banded and | |
366 | banded-block-banded matrices by only storing the entries in the non-zero bands. | |
367 | A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of | |
368 | @code{BlockArrays.jl} whose layout of non-zero blocks is banded.") | |
369 | (license license:expat))) | |
370 | ||
52d09b1f | 371 | (define-public julia-bufferedstreams |
372 | (package | |
373 | (name "julia-bufferedstreams") | |
374 | (version "1.0.0") | |
375 | (source | |
376 | (origin | |
377 | (method git-fetch) | |
378 | (uri (git-reference | |
379 | (url "https://github.com/BioJulia/BufferedStreams.jl") | |
380 | (commit (string-append "v" version)))) | |
381 | (file-name (git-file-name name version)) | |
382 | (sha256 | |
383 | (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z")))) | |
384 | (build-system julia-build-system) | |
385 | ;; The package is old and tests are using undefined functions. They also | |
386 | ;; freeze, see | |
387 | ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182 | |
388 | (arguments | |
389 | '(#:tests? #f | |
390 | #:julia-package-name "BufferedStreams")) | |
391 | (propagated-inputs `(("julia-compat" ,julia-compat))) | |
392 | (home-page "https://github.com/BioJulia/BufferedStreams.jl") | |
393 | (synopsis "Fast composable IO streams") | |
394 | (description "@code{BufferedStreams.jl} provides buffering for IO | |
395 | operations. It can wrap any @code{IO} type automatically making incremental | |
396 | reading and writing faster.") | |
397 | (license license:expat))) | |
398 | ||
b91ad832 | 399 | (define-public julia-calculus |
400 | (package | |
401 | (name "julia-calculus") | |
402 | (version "0.5.1") | |
403 | (source | |
404 | (origin | |
405 | (method git-fetch) | |
406 | (uri (git-reference | |
407 | (url "https://github.com/JuliaMath/Calculus.jl") | |
408 | (commit (string-append "v" version)))) | |
409 | (file-name (git-file-name name version)) | |
410 | (sha256 | |
411 | (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2")))) | |
412 | (build-system julia-build-system) | |
413 | (home-page "https://github.com/JuliaMath/Calculus.jl") | |
414 | (synopsis "Common utilities for automatic differentiation") | |
415 | (description "This package provides tools for working with the basic | |
416 | calculus operations of differentiation and integration. The @code{Calculus} | |
417 | package produces approximate derivatives by several forms of finite | |
418 | differencing or produces exact derivative using symbolic differentiation. It | |
419 | can also be used to compute definite integrals by different numerical | |
420 | methods.") | |
421 | (license license:expat))) | |
422 | ||
9cc167fe VM |
423 | (define-public julia-categoricalarrays |
424 | (package | |
425 | (name "julia-categoricalarrays") | |
426 | (version "0.9.7") | |
427 | (source | |
428 | (origin | |
429 | (method git-fetch) | |
430 | (uri (git-reference | |
431 | (url "https://github.com/JuliaData/CategoricalArrays.jl") | |
432 | (commit (string-append "v" version)))) | |
433 | (file-name (git-file-name name version)) | |
434 | (sha256 | |
435 | (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x")))) | |
436 | (build-system julia-build-system) | |
437 | (native-inputs | |
438 | `(("julia-pooledarrays" ,julia-pooledarrays))) | |
439 | (propagated-inputs | |
440 | `(("julia-dataapi" ,julia-dataapi) | |
441 | ("julia-json" ,julia-json) | |
442 | ("julia-json3" ,julia-json3) | |
443 | ("julia-missings" ,julia-missings) | |
444 | ("julia-recipesbase" ,julia-recipesbase) | |
445 | ("julia-structtypes" ,julia-structtypes))) | |
446 | (home-page "https://github.com/JuliaData/CategoricalArrays.jl") | |
447 | (synopsis "Arrays for working with categorical data") | |
448 | (description "This package provides tools for working with categorical | |
449 | variables, both with unordered (nominal variables) and ordered categories | |
450 | (ordinal variables), optionally with missing values.") | |
451 | (license license:expat))) | |
452 | ||
397f8c48 | 453 | (define-public julia-chainrules |
454 | (package | |
455 | (name "julia-chainrules") | |
4a79a39b | 456 | (version "1.1.0") |
397f8c48 | 457 | (source |
458 | (origin | |
459 | (method git-fetch) | |
460 | (uri (git-reference | |
461 | (url "https://github.com/JuliaDiff/ChainRules.jl") | |
462 | (commit (string-append "v" version)))) | |
463 | (file-name (git-file-name name version)) | |
464 | (sha256 | |
4a79a39b | 465 | (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70")))) |
397f8c48 | 466 | (build-system julia-build-system) |
467 | (inputs ;required for test | |
468 | `(("julia-chainrulestestutils" ,julia-chainrulestestutils) | |
469 | ("julia-finitedifferences" ,julia-finitedifferences) | |
470 | ("julia-nanmath" ,julia-nanmath) | |
471 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
472 | (propagated-inputs | |
473 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
474 | ("julia-compat" ,julia-compat) | |
475 | ("julia-reexport" ,julia-reexport) | |
476 | ("julia-requires" ,julia-requires))) | |
477 | (home-page "https://github.com/JuliaDiff/ChainRules.jl") | |
478 | (synopsis "Common utilities for automatic differentiation") | |
479 | (description "The is package provides a variety of common utilities that | |
480 | can be used by downstream automatic differentiation (AD) tools to define and | |
481 | execute forward-, reverse-, and mixed-mode primitives.") | |
482 | (license license:expat))) | |
483 | ||
bb1ca1f3 | 484 | (define-public julia-chainrulescore |
485 | (package | |
486 | (name "julia-chainrulescore") | |
038a7dd5 | 487 | (version "1.0.2") |
bb1ca1f3 | 488 | (source |
489 | (origin | |
490 | (method git-fetch) | |
491 | (uri (git-reference | |
492 | (url "https://github.com/JuliaDiff/ChainRulesCore.jl") | |
493 | (commit (string-append "v" version)))) | |
494 | (file-name (git-file-name name version)) | |
495 | (sha256 | |
038a7dd5 | 496 | (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb")))) |
bb1ca1f3 | 497 | (build-system julia-build-system) |
498 | (inputs ;required for tests | |
499 | `(("julia-benchmarktools" ,julia-benchmarktools) | |
500 | ("julia-staticarrays" ,julia-staticarrays))) | |
501 | (propagated-inputs | |
502 | `(("julia-compat" ,julia-compat))) | |
503 | (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl") | |
504 | (synopsis "Common utilities used by downstream automatic differentiation tools") | |
505 | (description "The package provides a light-weight dependency for defining | |
506 | sensitivities for functions without the need to depend on ChainRules itself.") | |
507 | (license license:expat))) | |
508 | ||
9eb29396 | 509 | (define-public julia-chainrulestestutils |
510 | (package | |
511 | (name "julia-chainrulestestutils") | |
58927767 | 512 | (version "1.2.3") |
9eb29396 | 513 | (source |
514 | (origin | |
515 | (method git-fetch) | |
516 | (uri (git-reference | |
517 | (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") | |
518 | (commit (string-append "v" version)))) | |
519 | (file-name (git-file-name name version)) | |
520 | (sha256 | |
58927767 | 521 | (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9")))) |
9eb29396 | 522 | (build-system julia-build-system) |
523 | (propagated-inputs | |
524 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
525 | ("julia-compat" ,julia-compat) | |
526 | ("julia-finitedifference" ,julia-finitedifferences))) | |
527 | (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") | |
528 | (synopsis "Common utilities used by downstream automatic differentiation tools") | |
529 | (description "This package is designed to help in testing | |
530 | @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main | |
531 | entry points are @code{ChainRulesTestUtils.frule_test}, | |
532 | @code{ChainRulesTestUtils.rrule_test}, and | |
533 | @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the | |
534 | rules against numerical differentiation (using @code{FiniteDifferences.jl}). | |
535 | ||
536 | @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it | |
537 | can be a test-only dependency, allowing it to have potentially heavy | |
538 | dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.") | |
539 | (license license:expat))) | |
540 | ||
13a8b866 | 541 | (define-public julia-colors |
542 | (package | |
543 | (name "julia-colors") | |
d9856912 | 544 | (version "0.12.8") |
13a8b866 | 545 | (source |
546 | (origin | |
547 | (method git-fetch) | |
548 | (uri (git-reference | |
549 | (url "https://github.com/JuliaGraphics/Colors.jl") | |
550 | (commit (string-append "v" version)))) | |
551 | (file-name (git-file-name name version)) | |
552 | (sha256 | |
d9856912 | 553 | (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3")))) |
13a8b866 | 554 | (build-system julia-build-system) |
555 | (propagated-inputs | |
556 | `(("julia-colortypes" ,julia-colortypes) | |
557 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
558 | ("julia-reexport" ,julia-reexport))) | |
559 | (home-page "https://github.com/JuliaGraphics/Colors.jl") | |
560 | (synopsis "Tools for dealing with color") | |
561 | (description "This package provides a wide array of functions for dealing | |
562 | with color. This includes conversion between colorspaces, measuring distance | |
563 | between colors, simulating color blindness, parsing colors, and generating | |
564 | color scales for graphics.") | |
565 | (license license:expat))) | |
566 | ||
a033f810 EF |
567 | (define-public julia-colorschemes |
568 | (package | |
569 | (name "julia-colorschemes") | |
9a24fc61 | 570 | (version "3.15.0") |
a033f810 EF |
571 | (source |
572 | (origin | |
573 | (method git-fetch) | |
574 | (uri (git-reference | |
575 | (url "https://github.com/JuliaGraphics/ColorSchemes.jl") | |
576 | (commit (string-append "v" version)))) | |
577 | (file-name (git-file-name name version)) | |
578 | (sha256 | |
9a24fc61 | 579 | (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq")))) |
a033f810 EF |
580 | (build-system julia-build-system) |
581 | (propagated-inputs | |
582 | `(("julia-colors" ,julia-colors) | |
583 | ("julia-colortypes" ,julia-colortypes) | |
584 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
585 | ("julia-staticarrays" ,julia-staticarrays))) | |
586 | (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl") | |
587 | (synopsis "Colorschemes, colormaps, gradients, and palettes") | |
588 | (description "This package provides a collection of colorschemes.") | |
589 | (license license:expat))) | |
590 | ||
9b8b132e | 591 | (define-public julia-colortypes |
592 | (package | |
593 | (name "julia-colortypes") | |
2211f3af | 594 | (version "0.11.0") |
9b8b132e | 595 | (source |
596 | (origin | |
597 | (method git-fetch) | |
598 | (uri (git-reference | |
599 | (url "https://github.com/JuliaGraphics/ColorTypes.jl") | |
600 | (commit (string-append "v" version)))) | |
601 | (file-name (git-file-name name version)) | |
602 | (sha256 | |
2211f3af | 603 | (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih")))) |
9b8b132e | 604 | (arguments |
605 | '(#:tests? #f)) ;require Documenter, not packaged yet | |
606 | (build-system julia-build-system) | |
607 | (propagated-inputs | |
608 | `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) | |
609 | (home-page "https://github.com/JuliaGraphics/ColorTypes.jl") | |
610 | (synopsis "Basic color types and constructor") | |
611 | (description "This minimalistic package serves as the foundation for | |
612 | working with colors in Julia. It defines basic color types and their | |
613 | constructors, and sets up traits and show methods to make them easier to work | |
614 | with.") | |
615 | (license license:expat))) | |
616 | ||
495df0b0 EF |
617 | (define-public julia-colorvectorspace |
618 | (package | |
619 | (name "julia-colorvectorspace") | |
e538d868 | 620 | (version "0.9.7") |
495df0b0 EF |
621 | (source |
622 | (origin | |
623 | (method git-fetch) | |
624 | (uri (git-reference | |
625 | (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl") | |
626 | (commit (string-append "v" version)))) | |
627 | (file-name (git-file-name name version)) | |
628 | (sha256 | |
e538d868 | 629 | (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi")))) |
495df0b0 EF |
630 | (build-system julia-build-system) |
631 | (propagated-inputs | |
632 | `(("julia-colortypes" ,julia-colortypes) | |
633 | ("julia-specialfunctions" ,julia-specialfunctions) | |
634 | ("julia-tensorcore" ,julia-tensorcore))) | |
635 | (native-inputs | |
636 | `(("julia-colors" ,julia-colors))) | |
637 | (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl") | |
638 | (synopsis "Treat colors as n-vectors for the purposes of arithmetic") | |
639 | (description "This package is an add-on to @code{ColorTypes.jl} and provides | |
640 | fast mathematical operations for objects with types such as RGB and Gray. | |
641 | Specifically, with this package both grayscale and RGB colors are treated as if | |
642 | they are points in a normed vector space.") | |
643 | (license license:expat))) | |
644 | ||
2405fcb4 EF |
645 | (define-public julia-combinatorics |
646 | (package | |
647 | (name "julia-combinatorics") | |
648 | (version "1.0.2") | |
649 | (source | |
650 | (origin | |
651 | (method git-fetch) | |
652 | (uri (git-reference | |
653 | (url "https://github.com/JuliaMath/Combinatorics.jl") | |
654 | (commit (string-append "v" version)))) | |
655 | (file-name (git-file-name name version)) | |
656 | (sha256 | |
657 | (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5")))) | |
658 | (build-system julia-build-system) | |
659 | (home-page "https://github.com/JuliaMath/Combinatorics.jl") | |
660 | (synopsis "Combinatorics library for Julia") | |
661 | (description "This package provides a combinatorics library for Julia, | |
662 | focusing mostly (as of now) on enumerative combinatorics and permutations.") | |
663 | (license license:expat))) | |
664 | ||
2ca38ee4 | 665 | (define-public julia-commonsubexpressions |
666 | (package | |
667 | (name "julia-commonsubexpressions") | |
668 | (version "0.3.0") | |
669 | (source | |
670 | (origin | |
671 | (method git-fetch) | |
672 | (uri (git-reference | |
673 | (url "https://github.com/rdeits/CommonSubexpressions.jl") | |
674 | (commit (string-append "v" version)))) | |
675 | (file-name (git-file-name name version)) | |
676 | (sha256 | |
677 | (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay")))) | |
678 | (build-system julia-build-system) | |
679 | (propagated-inputs | |
680 | `(("julia-macrotools" ,julia-macrotools))) | |
681 | (home-page "https://github.com/rdeits/CommonSubexpressions.jl") | |
f233bb17 LC |
682 | (synopsis "@code{@@cse} macro for Julia") |
683 | (description "This package provides the @code{@@cse} macro, which performs | |
2ca38ee4 | 684 | common subexpression elimination.") |
685 | (license license:expat))) | |
686 | ||
a1315b7f | 687 | (define-public julia-compat |
688 | (package | |
689 | (name "julia-compat") | |
ad970a21 | 690 | (version "3.39.0") |
a1315b7f | 691 | (source |
692 | (origin | |
693 | (method git-fetch) | |
694 | (uri (git-reference | |
695 | (url "https://github.com/JuliaLang/Compat.jl") | |
696 | (commit (string-append "v" version)))) | |
54721e7e | 697 | (file-name (git-file-name name version)) |
a1315b7f | 698 | (sha256 |
ad970a21 | 699 | (base32 "0qzvaqi5gqgc747fnajbvvf5vqbh6cwykwky00c7glvmvdsgk3z0")))) |
a1315b7f | 700 | (build-system julia-build-system) |
701 | (home-page "https://github.com/JuliaLang/Compat.jl") | |
702 | (synopsis "Compatibility across Julia versions") | |
703 | (description "The Compat package is designed to ease interoperability | |
704 | between older and newer versions of the Julia language. The Compat package | |
705 | provides a macro that lets you use the latest syntax in a backwards-compatible | |
706 | way.") | |
707 | (license license:expat))) | |
eccd448c | 708 | |
35044d3e | 709 | (define-public julia-constructionbase |
b694fd4b EF |
710 | (package |
711 | (name "julia-constructionbase") | |
57e5c907 | 712 | (version "1.3.0") |
b694fd4b EF |
713 | (source |
714 | (origin | |
715 | (method git-fetch) | |
716 | (uri (git-reference | |
717 | (url "https://github.com/JuliaObjects/ConstructionBase.jl") | |
718 | (commit (string-append "v" version)))) | |
719 | (file-name (git-file-name name version)) | |
720 | (sha256 | |
57e5c907 | 721 | (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q")))) |
b694fd4b EF |
722 | (build-system julia-build-system) |
723 | (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/") | |
724 | (synopsis "Primitive functions for construction of objects") | |
725 | (description "This very lightweight package provides primitive functions | |
35044d3e | 726 | for construction of objects.") |
b694fd4b | 727 | (license license:expat))) |
35044d3e | 728 | |
9e21a2a1 EF |
729 | (define-public julia-coordinatetransformations |
730 | (package | |
731 | (name "julia-coordinatetransformations") | |
732 | (version "0.6.1") | |
733 | (source | |
734 | (origin | |
735 | (method git-fetch) | |
736 | (uri (git-reference | |
737 | (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl") | |
738 | (commit (string-append "v" version)))) | |
739 | (file-name (git-file-name name version)) | |
740 | (sha256 | |
741 | (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d")))) | |
742 | (build-system julia-build-system) | |
743 | (arguments | |
744 | `(#:tests? #f)) ; Documenter.jl not packaged yet. | |
745 | (propagated-inputs | |
746 | `(("julia-staticarrays" ,julia-staticarrays))) | |
747 | ;(native-inputs | |
748 | ; `(("julia-documenter" ,julia-documenter) | |
749 | ; ("julia-forwarddiff" ,julia-forwarddiff) | |
750 | ; ("julia-unitful" ,julia-unitful))) | |
751 | (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl") | |
752 | (synopsis "Coordinate transformations in Julia") | |
753 | (description "@code{CoordinateTransformations} is a Julia package to manage | |
754 | simple or complex networks of coordinate system transformations. | |
755 | Transformations can be easily applied, inverted, composed, and differentiated | |
756 | (both with respect to the input coordinates and with respect to transformation | |
757 | parameters such as rotation angle). Transformations are designed to be | |
758 | light-weight and efficient enough for, e.g., real-time graphical applications, | |
759 | while support for both explicit and automatic differentiation makes it easy to | |
760 | perform optimization and therefore ideal for computer vision applications such | |
761 | as SLAM (simultaneous localization and mapping).") | |
762 | (license license:expat))) | |
763 | ||
a9db2df4 EF |
764 | (define-public julia-crayons |
765 | (package | |
766 | (name "julia-crayons") | |
767 | (version "4.0.4") | |
768 | (source | |
769 | (origin | |
770 | (method git-fetch) | |
771 | (uri (git-reference | |
772 | (url "https://github.com/KristofferC/Crayons.jl") | |
773 | (commit (string-append "v" version)))) | |
774 | (file-name (git-file-name name version)) | |
775 | (sha256 | |
776 | (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z")))) | |
777 | (build-system julia-build-system) | |
778 | (home-page "https://github.com/KristofferC/Crayons.jl") | |
779 | (synopsis "Colored and styled strings for terminals") | |
780 | (description "Crayons is a package that makes it simple to write strings in | |
781 | different colors and styles to terminals. It supports the 16 system colors, | |
782 | both the 256 color and 24 bit true color extensions, and the different text | |
783 | styles available to terminals.") | |
784 | (license license:expat))) | |
785 | ||
ccbf9c45 EF |
786 | (define-public julia-dataapi |
787 | (package | |
788 | (name "julia-dataapi") | |
e076ed6e | 789 | (version "1.7.0") |
ccbf9c45 EF |
790 | (source |
791 | (origin | |
792 | (method git-fetch) | |
793 | (uri (git-reference | |
794 | (url "https://github.com/JuliaData/DataAPI.jl") | |
795 | (commit (string-append "v" version)))) | |
796 | (file-name (git-file-name name version)) | |
797 | (sha256 | |
e076ed6e | 798 | (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7")))) |
ccbf9c45 EF |
799 | (build-system julia-build-system) |
800 | (home-page "https://github.com/JuliaData/DataAPI.jl") | |
801 | (synopsis "Data-focused namespace for packages to share functions") | |
802 | (description "This package provides a namespace for data-related generic | |
803 | function definitions to solve the optional dependency problem; packages wishing | |
804 | to share and/or extend functions can avoid depending directly on each other by | |
805 | moving the function definition to DataAPI.jl and each package taking a | |
806 | dependency on it.") | |
807 | (license license:expat))) | |
808 | ||
6545cef5 | 809 | (define-public julia-datastructures |
810 | (package | |
811 | (name "julia-datastructures") | |
812 | (version "0.18.9") | |
813 | (source | |
814 | (origin | |
815 | (method git-fetch) | |
816 | (uri (git-reference | |
817 | (url "https://github.com/JuliaCollections/DataStructures.jl") | |
818 | (commit (string-append "v" version)))) | |
819 | (file-name (git-file-name name version)) | |
820 | (sha256 | |
821 | (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l")))) | |
822 | (propagated-inputs | |
823 | `(("julia-compat" ,julia-compat) | |
824 | ("julia-orderedcollections" ,julia-orderedcollections))) | |
825 | (build-system julia-build-system) | |
826 | (home-page "https://github.com/JuliaCollections/DataStructures.jl") | |
827 | (synopsis "Julia module providing different data structures") | |
828 | (description "This package implements a variety of data structures, | |
829 | including, @code{CircularBuffer}, @code{Queue}, @code{Stack}, | |
830 | @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.") | |
831 | (license license:expat))) | |
832 | ||
21df298e EF |
833 | (define-public julia-datavalueinterfaces |
834 | (package | |
835 | (name "julia-datavalueinterfaces") | |
836 | (version "1.0.0") | |
837 | (source | |
838 | (origin | |
839 | (method git-fetch) | |
840 | (uri (git-reference | |
841 | (url "https://github.com/queryverse/DataValueInterfaces.jl") | |
842 | (commit (string-append "v" version)))) | |
843 | (file-name (git-file-name name version)) | |
844 | (sha256 | |
845 | (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8")))) | |
846 | (build-system julia-build-system) | |
847 | (home-page "https://github.com/queryverse/DataValueInterfaces.jl") | |
848 | (synopsis "Interface for DataValues.jl") | |
849 | (description "This package allows a few \"forward\" definitions for the | |
850 | @code{DataValues.jl} package that other packages can utilize for integration | |
851 | without having to take direct dependencies.") | |
852 | (license license:expat))) | |
853 | ||
e886181b EF |
854 | (define-public julia-datavalues |
855 | (package | |
856 | (name "julia-datavalues") | |
857 | (version "0.4.13") | |
858 | (source | |
859 | (origin | |
860 | (method git-fetch) | |
861 | (uri (git-reference | |
862 | (url "https://github.com/queryverse/DataValues.jl") | |
863 | (commit (string-append "v" version)))) | |
864 | (file-name (git-file-name name version)) | |
865 | (sha256 | |
866 | (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv")))) | |
867 | (build-system julia-build-system) | |
868 | (arguments | |
21747ffa EF |
869 | `(#:tests? #f ; Tests need upgrading with newer Julia version. |
870 | #:phases | |
e886181b EF |
871 | (modify-phases %standard-phases |
872 | (add-after 'unpack 'skip-known-failing-tests | |
873 | (lambda _ | |
874 | ;; See upstream report: | |
875 | ;; https://github.com/queryverse/DataValues.jl/issues/83 | |
876 | (substitute* "test/array/test_reduce.jl" | |
877 | ((".*DataValue\\(mapreduce.*") "") | |
878 | ((".*DataValue\\(method\\(f.*") "")) | |
879 | #t))))) | |
880 | (propagated-inputs | |
881 | `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces))) | |
882 | (home-page "https://github.com/queryverse/DataValues.jl") | |
883 | (synopsis "Missing values for Julia") | |
884 | (description "This package provides the type @code{DataValue} that is used | |
885 | to represent missing data.") | |
886 | (license license:expat))) | |
887 | ||
52811a76 EF |
888 | (define-public julia-deepdiffs |
889 | (package | |
890 | (name "julia-deepdiffs") | |
891 | (version "1.2.0") | |
892 | (source | |
893 | (origin | |
894 | (method git-fetch) | |
895 | (uri (git-reference | |
896 | (url "https://github.com/ssfrr/DeepDiffs.jl") | |
897 | (commit (string-append "v" version)))) | |
898 | (file-name (git-file-name name version)) | |
899 | (sha256 | |
900 | (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds")))) | |
901 | (build-system julia-build-system) | |
902 | (home-page "https://github.com/ssfrr/DeepDiffs.jl") | |
903 | (synopsis "Compute and pretty-print diffs for data structures") | |
904 | (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function, | |
905 | which finds and displays differences (diffs) between Julia data structures. It | |
906 | supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing | |
907 | dictionaries where values associated with a particular key may change, | |
908 | @code{deepdiff} will recurse into value to provide a more detailed diff.") | |
909 | (license license:expat))) | |
910 | ||
f74305a0 EF |
911 | (define-public julia-dictionaries |
912 | (package | |
913 | (name "julia-dictionaries") | |
23dbed6f | 914 | (version "0.3.10") |
f74305a0 EF |
915 | (source |
916 | (origin | |
917 | (method git-fetch) | |
918 | (uri (git-reference | |
919 | (url "https://github.com/andyferris/Dictionaries.jl") | |
920 | (commit (string-append "v" version)))) | |
921 | (file-name (git-file-name name version)) | |
922 | (sha256 | |
23dbed6f | 923 | (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5")))) |
f74305a0 EF |
924 | (build-system julia-build-system) |
925 | (propagated-inputs | |
926 | `(("julia-indexing" ,julia-indexing))) | |
927 | (home-page "https://github.com/andyferris/Dictionaries.jl") | |
928 | (synopsis "Alternative interface for dictionaries in Julia") | |
929 | (description "This package provides an alternative interface for | |
930 | dictionaries in Julia, for improved productivity and performance.") | |
931 | (license license:expat))) | |
932 | ||
6ee82f63 EF |
933 | (define-public julia-distances |
934 | (package | |
935 | (name "julia-distances") | |
936 | (version "0.10.3") | |
937 | (source | |
938 | (origin | |
939 | (method git-fetch) | |
940 | (uri (git-reference | |
941 | (url "https://github.com/JuliaStats/Distances.jl") | |
942 | (commit (string-append "v" version)))) | |
943 | (file-name (git-file-name name version)) | |
944 | (sha256 | |
945 | (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig")))) | |
946 | (build-system julia-build-system) | |
947 | (arguments | |
948 | `(#:phases | |
949 | (modify-phases %standard-phases | |
950 | (add-after 'unpack 'skip-flakey-tests | |
951 | (lambda _ | |
c20c9e16 EF |
952 | ;; Some combination of these tests fail nondeterministically |
953 | ;; each of the times this package is built. | |
6ee82f63 EF |
954 | (substitute* "test/test_dists.jl" |
955 | (("test dyz ≥") "test_nowarn dyz ≥") | |
956 | (("test dist\\(y, x") "test_nowarn dist(y, x") | |
c20c9e16 EF |
957 | (("test dist\\(z, x") "test_nowarn dist(z, x") |
958 | (("test dist\\(z, y") "test_nowarn dist(z, y"))))))) | |
6ee82f63 EF |
959 | (propagated-inputs |
960 | `(("julia-statsapi" ,julia-statsapi))) | |
961 | (native-inputs | |
962 | `(("julia-offsetarrays" ,julia-offsetarrays) | |
963 | ("julia-unitful" ,julia-unitful))) | |
964 | (home-page "https://github.com/JuliaStats/Distances.jl") | |
965 | (synopsis "Julia package for evaluating distances (metrics) between vectors") | |
966 | (description "A Julia package for evaluating distances(metrics) between | |
967 | vectors. This package also provides optimized functions to compute column-wise | |
968 | and pairwise distances, which are often substantially faster than a | |
969 | straightforward loop implementation.") | |
970 | (license license:expat))) | |
971 | ||
9e77eb58 EF |
972 | (define-public julia-docstringextensions |
973 | (package | |
974 | (name "julia-docstringextensions") | |
96ebbd45 | 975 | (version "0.8.5") |
9e77eb58 EF |
976 | (source |
977 | (origin | |
978 | (method git-fetch) | |
979 | (uri (git-reference | |
980 | (url "https://github.com/JuliaDocs/DocStringExtensions.jl") | |
981 | (commit (string-append "v" version)))) | |
982 | (file-name (git-file-name name version)) | |
983 | (sha256 | |
96ebbd45 | 984 | (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb")))) |
9e77eb58 | 985 | (build-system julia-build-system) |
fcc900bd EF |
986 | (arguments |
987 | `(#:tests? #f)) ; Tests try to read SSL certificates. | |
9e77eb58 EF |
988 | (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/") |
989 | (synopsis "Extensions for Julia's docsystem") | |
990 | (description "This package provides a collection of useful extensions for | |
991 | Julia's built-in docsystem. These are features that are not yet mature enough | |
992 | to be considered for inclusion in Base, or that have sufficiently niche use | |
993 | cases that including them with the default Julia installation is not seen as | |
994 | valuable enough at this time.") | |
995 | (license license:expat))) | |
996 | ||
7b59508c EF |
997 | ;; By removing all the javascript and css downloads any HTML documentation |
998 | ;; produced by this package will not be very useful. | |
999 | (define-public julia-documenter | |
1000 | (package | |
1001 | (name "julia-documenter") | |
1002 | (version "0.27.7") | |
1003 | (source | |
1004 | (origin | |
1005 | (method git-fetch) | |
1006 | (uri (git-reference | |
1007 | (url "https://github.com/JuliaDocs/Documenter.jl") | |
1008 | (commit (string-append "v" version)))) | |
1009 | (file-name (git-file-name name version)) | |
1010 | (sha256 | |
1011 | (base32 "00ai3c24i3fkn5plmavampcxm0ijhwk0v5cn9xwm7rvbjnnvaaam")))) | |
1012 | (build-system julia-build-system) | |
1013 | (arguments | |
1014 | `(#:phases | |
1015 | (modify-phases %standard-phases | |
1016 | (add-after 'unpack 'patch-source | |
1017 | (lambda* (#:key inputs #:allow-other-keys) | |
1018 | (substitute* "src/Deps.jl" | |
1019 | (("pip install") | |
1020 | (string-append (assoc-ref inputs "python") | |
1021 | "/bin/pip install"))) | |
1022 | #t)) | |
1023 | (add-after 'unpack 'remove-javascript-downloads | |
1024 | (lambda _ | |
1025 | (substitute* "src/Writers/HTMLWriter.jl" | |
1026 | (("cdnjs.cloudflare.com") "example.com")) | |
1027 | ;; Removing the javascript downloads causes these tests fail. | |
1028 | (substitute* "test/examples/tests.jl" | |
1029 | ((".*Main\\.examples_html_doc.*") "") | |
1030 | ((".*Main\\.examples_html_mathjax3_doc.*") "")) | |
1031 | #t))))) | |
1032 | (propagated-inputs | |
1033 | `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters) | |
1034 | ("julia-docstringextensions" ,julia-docstringextensions) | |
1035 | ("julia-iocapture" ,julia-iocapture) | |
1036 | ("julia-json" ,julia-json))) | |
1037 | (inputs | |
1038 | `(("python" ,python-wrapper))) | |
1039 | (native-inputs | |
1040 | `(("git" ,git-minimal) | |
1041 | ("julia-documentermarkdown" ,julia-documentermarkdown) | |
1042 | ("julia-documentertools" ,julia-documentertools))) | |
1043 | (home-page "https://juliadocs.github.io/Documenter.jl") | |
1044 | (synopsis "Documentation generator for Julia") | |
1045 | (description "This package provides a documentation generator for Julia.") | |
1046 | (license license:expat))) | |
1047 | ||
1048 | (define julia-documenter-bootstrap | |
1049 | (package | |
1050 | (inherit julia-documenter) | |
1051 | (name "julia-documenter-bootstrap") | |
1052 | (arguments | |
1053 | (substitute-keyword-arguments (package-arguments julia-documenter) | |
1054 | ((#:phases phases) | |
1055 | `(modify-phases ,phases | |
1056 | (delete 'patch-source))) | |
1057 | ;; Not all dependencies available in bootstrap version. | |
1058 | ((#:tests? _ #f) #f))) | |
1059 | (inputs `()) | |
1060 | (native-inputs `()))) | |
1061 | ||
1062 | (define-public julia-documentermarkdown | |
1063 | (package | |
1064 | (name "julia-documentermarkdown") | |
1065 | (version "0.2.2") | |
1066 | (source | |
1067 | (origin | |
1068 | (method git-fetch) | |
1069 | (uri (git-reference | |
1070 | (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl") | |
1071 | (commit (string-append "v" version)))) | |
1072 | (file-name (git-file-name name version)) | |
1073 | (sha256 | |
1074 | (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8")))) | |
1075 | (build-system julia-build-system) | |
1076 | (inputs | |
1077 | ;; We don't want to propagate the bootstrap version. | |
1078 | ;; Cycle with Documenter.jl in later versions. | |
1079 | `(("julia-documenter" ,julia-documenter-bootstrap))) | |
1080 | (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl") | |
1081 | (synopsis "Documenter's Markdown") | |
1082 | (description "This package enables the Markdown / MkDocs backend of | |
1083 | @code{Documenter.jl}.") | |
1084 | (license license:expat))) | |
1085 | ||
1086 | (define-public julia-documentertools | |
1087 | (package | |
1088 | (name "julia-documentertools") | |
1089 | (version "0.1.13") | |
1090 | (source | |
1091 | (origin | |
1092 | (method git-fetch) | |
1093 | (uri (git-reference | |
1094 | (url "https://github.com/JuliaDocs/DocumenterTools.jl") | |
1095 | (commit (string-append "v" version)))) | |
1096 | (file-name (git-file-name name version)) | |
1097 | (sha256 | |
1098 | (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6")))) | |
1099 | (build-system julia-build-system) | |
1100 | (arguments | |
1101 | `(#:tests? #f)) ; Tests require network. | |
1102 | (inputs | |
1103 | ;; We don't want to propagate the bootstrap version. | |
1104 | ;; Cycle with Documenter.jl in later versions. | |
1105 | `(("julia-documenter" ,julia-documenter-bootstrap))) | |
1106 | (propagated-inputs | |
1107 | `(("julia-docstringextensions" ,julia-docstringextensions) | |
1108 | ("julia-gumbo" ,julia-gumbo) | |
1109 | ("julia-sass" ,julia-sass))) | |
1110 | (native-inputs | |
1111 | `(("julia-example" ,julia-example))) | |
1112 | (home-page "https://github.com/JuliaDocs/DocumenterTools.jl") | |
1113 | (synopsis "Extra tools for setting up Documenter.jl") | |
1114 | (description "This package contains utilities for setting up documentation | |
1115 | generation with @code{Documenter.jl}.") | |
1116 | (license license:expat))) | |
1117 | ||
7bf791ee | 1118 | (define-public julia-diffresults |
1119 | (package | |
1120 | (name "julia-diffresults") | |
1121 | (version "1.0.3") | |
1122 | (source | |
1123 | (origin | |
1124 | (method git-fetch) | |
1125 | (uri (git-reference | |
1126 | (url "https://github.com/JuliaDiff/DiffResults.jl") | |
1127 | (commit (string-append "v" version)))) | |
1128 | (file-name (git-file-name name version)) | |
1129 | (sha256 | |
1130 | (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v")))) | |
1131 | (propagated-inputs | |
1132 | `(("julia-staticarrays" ,julia-staticarrays))) | |
1133 | (build-system julia-build-system) | |
1134 | (home-page "https://github.com/JuliaDiff/DiffResults.jl") | |
1135 | (synopsis "In-place differentiation methods of primal values at multi-order") | |
1136 | (description "This package provides the @code{DiffResult} type, which can | |
1137 | be passed to in-place differentiation methods instead of an output buffer.") | |
1138 | (license license:expat))) | |
1139 | ||
33e5152a | 1140 | (define-public julia-diffrules |
1141 | (package | |
1142 | (name "julia-diffrules") | |
1143 | (version "1.0.2") | |
1144 | (source | |
1145 | (origin | |
1146 | (method git-fetch) | |
1147 | (uri (git-reference | |
1148 | (url "https://github.com/JuliaDiff/DiffRules.jl") | |
1149 | (commit (string-append "v" version)))) | |
1150 | (file-name (git-file-name name version)) | |
1151 | (sha256 | |
1152 | (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl")))) | |
1153 | (propagated-inputs | |
1154 | `(("julia-nanmath" ,julia-nanmath) | |
1155 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
1156 | (build-system julia-build-system) | |
1157 | (home-page "https://github.com/JuliaDiff/DiffRules.jl") | |
1158 | (synopsis "Primitive differentiation rules") | |
1159 | (description "This package provides primitive differentiation rules that | |
1160 | can be composed via various formulations of the chain rule. Using | |
1161 | @code{DiffRules}, new differentiation rules can defined, query whether or not | |
1162 | a given rule exists, and symbolically apply rules to simple Julia expressions.") | |
1163 | (license license:expat))) | |
1164 | ||
df4be2e9 | 1165 | (define-public julia-difftests |
1166 | (package | |
1167 | (name "julia-difftests") | |
1168 | (version "0.1.1") | |
1169 | (source | |
1170 | (origin | |
1171 | (method git-fetch) | |
1172 | (uri (git-reference | |
1173 | (url "https://github.com/JuliaDiff/DiffTests.jl") | |
1174 | (commit (string-append "v" version)))) | |
1175 | (file-name (git-file-name name version)) | |
1176 | (sha256 | |
1177 | (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57")))) | |
1178 | (build-system julia-build-system) | |
1179 | (home-page "https://github.com/JuliaDiff/DiffTests.jl") | |
1180 | (synopsis "Common test functions for differentiation tools") | |
1181 | (description "This package contains a common suite of test functions for | |
1182 | stressing the robustness of differentiation tools.") | |
1183 | (license license:expat))) | |
ae131820 EF |
1184 | |
1185 | (define-public julia-dualnumbers | |
1186 | (package | |
1187 | (name "julia-dualnumbers") | |
1188 | (version "0.6.5") | |
1189 | (source | |
1190 | (origin | |
1191 | (method git-fetch) | |
1192 | (uri (git-reference | |
1193 | (url "https://github.com/JuliaDiff/DualNumbers.jl") | |
1194 | (commit (string-append "v" version)))) | |
1195 | (file-name (git-file-name name version)) | |
1196 | (sha256 | |
1197 | (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5")))) | |
1198 | (build-system julia-build-system) | |
1199 | (arguments | |
1200 | `(#:phases | |
1201 | (modify-phases %standard-phases | |
1202 | (add-after 'unpack 'adjust-test-suite | |
1203 | (lambda _ | |
1204 | (substitute* "test/runtests.jl" | |
1205 | ;; Seems to not play nicely with SpecialFunctions | |
1206 | ((".*isempty.*") ""))))))) | |
1207 | (propagated-inputs | |
1208 | `(("julia-calculus" ,julia-calculus) | |
1209 | ("julia-nanmath" ,julia-nanmath) | |
1210 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
1211 | (home-page "https://github.com/JuliaDiff/DualNumbers.jl") | |
1212 | (synopsis "Represent dual numbers and for perform dual algebra") | |
1213 | (description "The @code{DualNumbers} Julia package defines the @code{Dual} | |
1214 | type to represent dual numbers, and supports standard mathematical operations on | |
1215 | them. Conversions and promotions are defined to allow performing operations on | |
1216 | combinations of dual numbers with predefined Julia numeric types.") | |
1217 | (license license:expat))) | |
df4be2e9 | 1218 | |
25ece40e EF |
1219 | (define-public julia-ellipsisnotation |
1220 | (package | |
1221 | (name "julia-ellipsisnotation") | |
1222 | (version "1.1.0") | |
1223 | (source | |
1224 | (origin | |
1225 | (method git-fetch) | |
1226 | (uri (git-reference | |
1227 | (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl") | |
1228 | (commit (string-append "v" version)))) | |
1229 | (file-name (git-file-name name version)) | |
1230 | (sha256 | |
1231 | (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7")))) | |
1232 | (build-system julia-build-system) | |
0f15f774 EF |
1233 | (arguments |
1234 | `(#:phases | |
1235 | (modify-phases %standard-phases | |
1236 | (add-after 'unpack 'adjust-test-suite | |
1237 | (lambda _ | |
1238 | (substitute* "test/runtests.jl" | |
1239 | ;; Seems to not play nicely with Julia-1.6. | |
1240 | ((".*basic.jl.*") ""))))))) | |
25ece40e EF |
1241 | (propagated-inputs |
1242 | `(("julia-arrayinterface" ,julia-arrayinterface))) | |
1243 | (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl") | |
1244 | (synopsis "Elipsis notation implementation") | |
1245 | (description "This implements the notation @code{..} for indexing arrays. | |
1246 | It's similar to the Python @code{...} in that it means \"all of the columns | |
1247 | before (or after)\".") | |
1248 | (license license:expat))) | |
1249 | ||
fffb1e72 | 1250 | (define-public julia-example |
1251 | (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388")) | |
1252 | (package | |
1253 | (name "julia-example") | |
1254 | (version "0.5.4") ;tag not created upstream | |
1255 | (source | |
1256 | (origin | |
1257 | (method git-fetch) | |
1258 | (uri (git-reference | |
1259 | (url "https://github.com/JuliaLang/Example.jl") | |
1260 | (commit commit))) | |
1261 | (file-name (git-file-name name version)) | |
1262 | (sha256 | |
1263 | (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx")))) | |
1264 | (build-system julia-build-system) | |
1265 | (home-page "https://github.com/JuliaLang/Example.jl") | |
1266 | (synopsis "Module providing examples") | |
1267 | (description "This package provides various examples.") | |
1268 | (license license:expat)))) | |
1269 | ||
73b6f78c EF |
1270 | (define-public julia-exprtools |
1271 | (package | |
1272 | (name "julia-exprtools") | |
231387c3 | 1273 | (version "0.1.6") |
73b6f78c EF |
1274 | (source |
1275 | (origin | |
1276 | (method git-fetch) | |
1277 | (uri (git-reference | |
1278 | (url "https://github.com/invenia/ExprTools.jl") | |
1279 | (commit (string-append "v" version)))) | |
1280 | (file-name (git-file-name name version)) | |
1281 | (sha256 | |
231387c3 | 1282 | (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4")))) |
73b6f78c EF |
1283 | (build-system julia-build-system) |
1284 | (home-page "https://github.com/invenia/ExprTools.jl") | |
1285 | (synopsis "Light-weight expression manipulation tools") | |
1286 | (description "@code{ExprTools} provides tooling for working with Julia | |
1287 | expressions during metaprogramming. This package aims to provide light-weight | |
1288 | performant tooling without requiring additional package dependencies.") | |
1289 | (license license:expat))) | |
1290 | ||
0c1b3444 EF |
1291 | (define-public julia-ffmpeg |
1292 | (package | |
1293 | (name "julia-ffmpeg") | |
bef5db80 | 1294 | (version "0.4.1") |
0c1b3444 EF |
1295 | (source |
1296 | (origin | |
1297 | (method git-fetch) | |
1298 | (uri (git-reference | |
1299 | (url "https://github.com/JuliaIO/FFMPEG.jl") | |
1300 | (commit (string-append "v" version)))) | |
1301 | (file-name (git-file-name name version)) | |
1302 | (sha256 | |
bef5db80 | 1303 | (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b")))) |
0c1b3444 EF |
1304 | (build-system julia-build-system) |
1305 | (propagated-inputs | |
1306 | `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll) | |
1307 | ("julia-x264-jll" ,julia-x264-jll))) | |
1308 | (home-page "https://github.com/JuliaIO/FFMPEG.jl") | |
1309 | (synopsis "Julia Package for ffmpeg") | |
1310 | (description "This package is made to be included into packages that just | |
1311 | need the ffmpeg binaries + executables, and don't want the overhead of | |
1312 | @code{VideoIO.jl}.") | |
1313 | (license license:expat))) | |
1314 | ||
9810337b EF |
1315 | (define-public julia-fileio |
1316 | (package | |
1317 | (name "julia-fileio") | |
1318 | (version "1.9.1") | |
1319 | (source | |
1320 | (origin | |
1321 | (method git-fetch) | |
1322 | (uri (git-reference | |
1323 | (url "https://github.com/JuliaIO/FileIO.jl") | |
1324 | (commit (string-append "v" version)))) | |
1325 | (file-name (git-file-name name version)) | |
1326 | (sha256 | |
1327 | (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx")))) | |
1328 | (build-system julia-build-system) | |
1329 | (arguments | |
1330 | `(#:phases | |
1331 | (modify-phases %standard-phases | |
1332 | (delete 'reset-gzip-timestamps) | |
1333 | (add-after 'unpack 'skip-network-tests | |
1334 | (lambda _ | |
1335 | ;; These tests try to download audio/video files. | |
1336 | (substitute* "test/query.jl" | |
1337 | (("testset.*(MP4|OGG|MATROSKA).*" all) | |
1338 | (string-append all "return\n"))) | |
1339 | (substitute* "test/loadsave.jl" | |
1340 | (("testset.*CSVFiles.*" all) | |
1341 | (string-append all "return\n"))) | |
1342 | ;; This test tries to download a Julia package. | |
1343 | (substitute* "test/error_handling.jl" | |
1344 | (("testset.*Not installed.*" all) | |
1345 | (string-append all "return\n"))) | |
1346 | ;; This test tries to write to the store. | |
1347 | ;; (Error says can't find User 0) | |
1348 | (substitute* "test/runtests.jl" | |
1349 | ((".*test_mimesave.*") ""))))))) | |
1350 | (propagated-inputs | |
1351 | `(("julia-requires" ,julia-requires))) | |
1352 | (native-inputs | |
1353 | `(("julia-colortypes" ,julia-colortypes) | |
1354 | ("julia-filepathsbase" ,julia-filepathsbase) | |
1355 | ("julia-http" ,julia-http))) | |
1356 | (home-page "https://github.com/JuliaIO/FileIO.jl") | |
1357 | (synopsis "Main Package for IO, loading all different kind of files") | |
1358 | (description "@code{FileIO} aims to provide a common framework for detecting | |
1359 | file formats and dispatching to appropriate readers/writers. The two core | |
1360 | functions in this package are called @code{load} and @code{save}, and offer | |
1361 | high-level support for formatted files (in contrast with Julia's low-level | |
1362 | @code{read} and @code{write}).") | |
1363 | (license license:expat))) | |
1364 | ||
08ad8d69 EF |
1365 | (define-public julia-filepathsbase |
1366 | (package | |
1367 | (name "julia-filepathsbase") | |
1368 | (version "0.9.10") | |
1369 | (source | |
1370 | (origin | |
1371 | (method git-fetch) | |
1372 | (uri (git-reference | |
1373 | (url "https://github.com/rofinn/FilePathsBase.jl") | |
1374 | (commit (string-append "v" version)))) | |
1375 | (file-name (git-file-name name version)) | |
1376 | (sha256 | |
1377 | (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9")))) | |
1378 | (build-system julia-build-system) | |
1379 | (arguments | |
1380 | `(#:tests? #f)) ; Cycle with JLSO.jl | |
1381 | (home-page "https://github.com/rofinn/FilePathsBase.jl") | |
1382 | (synopsis "Filesystem path types in Julia") | |
1383 | (description "@code{FilePathsBase.jl} provides a type based approach to | |
1384 | working with filesystem paths in Julia.") | |
1385 | (license license:expat))) | |
1386 | ||
a0d3a73f | 1387 | (define-public julia-fillarrays |
1388 | (package | |
1389 | (name "julia-fillarrays") | |
d13e8acb | 1390 | (version "0.12.6") |
a0d3a73f | 1391 | (source |
1392 | (origin | |
1393 | (method git-fetch) | |
1394 | (uri (git-reference | |
1395 | (url "https://github.com/JuliaArrays/FillArrays.jl") | |
1396 | (commit (string-append "v" version)))) | |
1397 | (file-name (git-file-name name version)) | |
1398 | (sha256 | |
d13e8acb | 1399 | (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz")))) |
a0d3a73f | 1400 | (build-system julia-build-system) |
1401 | (inputs ;required by tests | |
1402 | `(("julia-staticarrays" ,julia-staticarrays))) | |
1403 | (home-page "https://github.com/JuliaArrays/FillArrays.jl") | |
1404 | (synopsis "Lazy matrix representation") | |
239f0259 | 1405 | (description "This package lazily represents matrices filled with |
a0d3a73f | 1406 | a single entry, as well as identity matrices. This package exports the |
1407 | following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros}, | |
1408 | @code{Trues} and @code{Falses}.") | |
1409 | (license license:expat))) | |
1410 | ||
9f9d887e EF |
1411 | (define-public julia-finitediff |
1412 | (package | |
1413 | (name "julia-finitediff") | |
f7d79b96 | 1414 | (version "2.8.1") |
9f9d887e EF |
1415 | (source |
1416 | (origin | |
1417 | (method git-fetch) | |
1418 | (uri (git-reference | |
1419 | (url "https://github.com/JuliaDiff/FiniteDiff.jl") | |
1420 | (commit (string-append "v" version)))) | |
1421 | (file-name (git-file-name name version)) | |
1422 | (sha256 | |
f7d79b96 | 1423 | (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq")))) |
9f9d887e EF |
1424 | (build-system julia-build-system) |
1425 | (arguments | |
1426 | `(#:phases | |
1427 | (modify-phases %standard-phases | |
1428 | (add-before 'check 'pre-check | |
1429 | (lambda _ | |
1430 | ;; We don't want to run all the tests; the Downstream tests | |
1431 | ;; try to download the package registry. | |
1432 | (setenv "GROUP" "Core") | |
1433 | #t))))) | |
1434 | (propagated-inputs | |
1435 | `(("julia-arrayinterface" ,julia-arrayinterface) | |
1436 | ("julia-requires" ,julia-requires) | |
1437 | ("julia-staticarrays" ,julia-staticarrays))) | |
1438 | (native-inputs | |
1439 | `(("julia-bandedmatrices" ,julia-bandedmatrices) | |
1440 | ("julia-blockbandedmatrices" ,julia-blockbandedmatrices) | |
1441 | ("julia-safetestsets" ,julia-safetestsets))) | |
1442 | (home-page "https://github.com/JuliaDiff/FiniteDiff.jl") | |
1443 | (synopsis "Calculations of gradients, Jacobians, and Hessians") | |
1444 | (description "This package is for calculating derivatives, gradients, | |
1445 | Jacobians, Hessians, etc. numerically. This library is for maximizing speed | |
1446 | while giving a usable interface to end users in a way that specializes on array | |
1447 | types and sparsity.") | |
1448 | (license license:expat))) | |
1449 | ||
f6c5a898 | 1450 | (define-public julia-finitedifferences |
1451 | (package | |
1452 | (name "julia-finitedifferences") | |
071f0366 | 1453 | (version "0.12.17") |
f6c5a898 | 1454 | (source |
1455 | (origin | |
1456 | (method git-fetch) | |
1457 | (uri (git-reference | |
1458 | (url "https://github.com/JuliaDiff/FiniteDifferences.jl") | |
1459 | (commit (string-append "v" version)))) | |
1460 | (file-name (git-file-name name version)) | |
1461 | (sha256 | |
071f0366 | 1462 | (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c")))) |
f6c5a898 | 1463 | (build-system julia-build-system) |
1464 | (inputs | |
1465 | `(("julia-benchmarktools" ,julia-benchmarktools))) | |
1466 | (propagated-inputs | |
1467 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
1468 | ("julia-richardson" ,julia-richardson) | |
1469 | ("julia-staticarrays" ,julia-staticarrays))) | |
1470 | (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl") | |
1471 | (synopsis "Estimates derivatives with finite differences") | |
1472 | (description "This package calculates approximate derivatives numerically | |
1473 | using finite difference.") | |
1474 | (license license:expat))) | |
1475 | ||
50f99cc5 | 1476 | (define-public julia-fixedpointnumbers |
1477 | (package | |
1478 | (name "julia-fixedpointnumbers") | |
1479 | (version "0.8.4") | |
1480 | (source | |
1481 | (origin | |
1482 | (method git-fetch) | |
1483 | (uri (git-reference | |
1484 | (url "https://github.com/JuliaMath/FixedPointNumbers.jl") | |
1485 | (commit (string-append "v" version)))) | |
1486 | (file-name (git-file-name name version)) | |
1487 | (sha256 | |
1488 | (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi")))) | |
1489 | (build-system julia-build-system) | |
1490 | (arguments | |
1491 | `(#:phases | |
1492 | (modify-phases %standard-phases | |
1493 | (add-after 'unpack 'disable-failing-test | |
1494 | (lambda* (#:key outputs #:allow-other-keys) | |
1495 | (substitute* "test/fixed.jl" | |
1496 | ;; A deprecation warning is not thrown | |
1497 | (("@test_logs.*:warn" all) (string-append "# " all))) | |
1498 | #t))))) | |
1499 | (propagated-inputs `(("julia-compat" ,julia-compat))) | |
1500 | (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl") | |
1501 | (synopsis "Fixed point types for Julia") | |
1502 | (description "@code{FixedPointNumbers.jl} implements fixed-point number | |
1503 | types for Julia. A fixed-point number represents a fractional, or | |
1504 | non-integral, number. In contrast with the more widely known floating-point | |
1505 | numbers, with fixed-point numbers the decimal point doesn't \"float\": | |
1506 | fixed-point numbers are effectively integers that are interpreted as being | |
1507 | scaled by a constant factor. Consequently, they have a fixed number of | |
1508 | digits (bits) after the decimal (radix) point.") | |
1509 | (license license:expat))) | |
d4987a50 | 1510 | |
9bb2e649 EF |
1511 | (define-public julia-formatting |
1512 | (package | |
1513 | (name "julia-formatting") | |
1514 | (version "0.4.2") | |
1515 | (source | |
1516 | (origin | |
1517 | (method git-fetch) | |
1518 | (uri (git-reference | |
1519 | (url "https://github.com/JuliaIO/Formatting.jl") | |
1520 | (commit (string-append "v" version)))) | |
1521 | (file-name (git-file-name name version)) | |
1522 | (sha256 | |
1523 | (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh")))) | |
1524 | (build-system julia-build-system) | |
1525 | (home-page "https://github.com/JuliaIO/Formatting.jl") | |
1526 | (synopsis "Julia package to provide Python-like formatting support") | |
1527 | (description "This package offers Python-style general formatting and | |
1528 | c-style numerical formatting.") | |
1529 | (license license:expat))) | |
1530 | ||
57e034d5 | 1531 | (define-public julia-forwarddiff |
1532 | (package | |
1533 | (name "julia-forwarddiff") | |
3beb0b80 | 1534 | (version "0.10.18") |
57e034d5 | 1535 | (source |
1536 | (origin | |
1537 | (method git-fetch) | |
1538 | (uri (git-reference | |
1539 | (url "https://github.com/JuliaDiff/ForwardDiff.jl") | |
1540 | (commit (string-append "v" version)))) | |
1541 | (file-name (git-file-name name version)) | |
1542 | (sha256 | |
3beb0b80 | 1543 | (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs")))) |
57e034d5 | 1544 | (build-system julia-build-system) |
1545 | (inputs ;required for tests | |
1546 | `(("julia-calculus" ,julia-calculus) | |
1547 | ("julia-difftests" ,julia-difftests))) | |
1548 | (propagated-inputs | |
1549 | `(("julia-commonsubexpressions" ,julia-commonsubexpressions) | |
1550 | ("julia-diffresults" ,julia-diffresults) | |
1551 | ("julia-diffrules" ,julia-diffrules) | |
1552 | ("julia-nanmath" ,julia-nanmath) | |
1553 | ("julia-specialfunctions" ,julia-specialfunctions) | |
1554 | ("julia-staticarrays" ,julia-staticarrays))) | |
1555 | (home-page "https://github.com/JuliaDiff/ForwardDiff.jl") | |
1556 | (synopsis "Methods to take multidimensional derivatives") | |
1557 | (description "This package implements methods to take derivatives, | |
1558 | gradients, Jacobians, Hessians, and higher-order derivatives of native Julia | |
1559 | functions (or any callable object, really) using forward mode automatic | |
1560 | differentiation (AD).") | |
1561 | (license license:expat))) | |
cc7c1f90 | 1562 | |
f9f98a2f EF |
1563 | (define-public julia-functionwrappers |
1564 | (package | |
1565 | (name "julia-functionwrappers") | |
1566 | (version "1.1.2") | |
1567 | (source | |
1568 | (origin | |
1569 | (method git-fetch) | |
1570 | (uri (git-reference | |
1571 | (url "https://github.com/yuyichao/FunctionWrappers.jl") | |
1572 | (commit (string-append "v" version)))) | |
1573 | (file-name (git-file-name name version)) | |
1574 | (sha256 | |
1575 | (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa")))) | |
1576 | (build-system julia-build-system) | |
1577 | (arguments | |
1578 | `(#:phases | |
1579 | (modify-phases %standard-phases | |
1580 | (add-after 'unpack 'adjust-tests | |
1581 | (lambda _ | |
1582 | (substitute* "test/runtests.jl" | |
1583 | (("testset \\\"Abstract.*" all) | |
1584 | (string-append all "return\n")))))))) | |
1585 | (home-page "https://github.com/yuyichao/FunctionWrappers.jl") | |
1586 | (synopsis "Type stable and efficient wrapper of arbitrary functions") | |
1587 | (description "This package provides a type stable and efficient wrapper of | |
1588 | arbitrary functions.") | |
1589 | (license license:expat))) | |
1590 | ||
ced47448 EF |
1591 | (define-public julia-fuzzycompletions |
1592 | (package | |
1593 | (name "julia-fuzzycompletions") | |
1594 | (version "0.4.1") | |
1595 | (source | |
1596 | (origin | |
1597 | (method git-fetch) | |
1598 | (uri (git-reference | |
1599 | (url "https://github.com/JunoLab/FuzzyCompletions.jl") | |
1600 | (commit (string-append "v" version)))) | |
1601 | (file-name (git-file-name name version)) | |
1602 | (sha256 | |
1603 | (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06")))) | |
1604 | (build-system julia-build-system) | |
226af89e EF |
1605 | (arguments |
1606 | `(#:phases | |
1607 | (modify-phases %standard-phases | |
1608 | (add-after 'unpack 'skip-failing-test | |
1609 | (lambda _ | |
1610 | (substitute* "test/runtests.jl" | |
1611 | ((".*RPLE.*") ""))))))) | |
ced47448 EF |
1612 | (home-page "https://github.com/JunoLab/FuzzyCompletions.jl") |
1613 | (synopsis "Fuzzy completion provider for Julia") | |
1614 | (description | |
1615 | "FuzzyCompletions provides fuzzy completions for a Julia runtime session.") | |
1616 | (license license:expat))) | |
1617 | ||
2ea20cde EF |
1618 | (define-public julia-genericlinearalgebra |
1619 | (package | |
1620 | (name "julia-genericlinearalgebra") | |
1621 | (version "0.2.5") | |
1622 | (source | |
1623 | (origin | |
1624 | (method git-fetch) | |
1625 | (uri (git-reference | |
1626 | (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl") | |
1627 | (commit (string-append "v" version)))) | |
1628 | (file-name (git-file-name name version)) | |
1629 | (sha256 | |
1630 | (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l")))) | |
1631 | (build-system julia-build-system) | |
1632 | (arguments | |
1633 | `(#:phases | |
1634 | (modify-phases %standard-phases | |
1635 | (add-after 'unpack 'adjust-test-suite | |
1636 | (lambda _ | |
1637 | (substitute* "test/runtests.jl" | |
1638 | ((".*lapack.*") ""))))))) | |
1639 | (native-inputs | |
1640 | `(("julia-quaternions" ,julia-quaternions))) | |
1641 | (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl") | |
1642 | (synopsis "Generic numerical linear algebra") | |
1643 | (description "The purpose of this package is partly to extend linear algebra | |
1644 | functionality in base to cover generic element types, e.g. @code{BigFloat} and | |
1645 | @code{Quaternion}, and partly to be a place to experiment with fast linear | |
1646 | algebra routines written in Julia (except for optimized BLAS).") | |
1647 | (license license:expat))) | |
1648 | ||
ba637c5c EF |
1649 | (define-public julia-genericschur |
1650 | (package | |
1651 | (name "julia-genericschur") | |
92929c22 | 1652 | (version "0.5.1") |
ba637c5c EF |
1653 | (source |
1654 | (origin | |
1655 | (method git-fetch) | |
1656 | (uri (git-reference | |
1657 | (url "https://github.com/RalphAS/GenericSchur.jl") | |
1658 | (commit (string-append "v" version)))) | |
1659 | (file-name (git-file-name name version)) | |
1660 | (sha256 | |
92929c22 | 1661 | (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d")))) |
ba637c5c EF |
1662 | (build-system julia-build-system) |
1663 | (arguments | |
1664 | `(#:phases | |
1665 | (modify-phases %standard-phases | |
1666 | (add-after 'unpack 'adjust-test-suite | |
1667 | (lambda _ | |
1668 | (substitute* "test/complex.jl" | |
1669 | ;; expected Array{Int32,1}, got a value of type Array{Int64,1} | |
1670 | (("A = _example") "#A = _example") | |
1671 | (("schurtest\\(A,20\\)") "")) | |
1672 | (substitute* "test/runtests.jl" | |
1673 | ;; Test errors relating to liblapack.so | |
1674 | ((".*complex\\.jl.*") "") | |
1675 | ((".*real\\.jl.*") "") | |
1676 | ;; GenericSVD is deprecated upstream | |
1677 | ((".*gordschur\\.jl.*") ""))))))) | |
1678 | (home-page "https://github.com/RalphAS/GenericSchur.jl") | |
1679 | (synopsis "Schur decomposition of matrices with generic element types") | |
1680 | (description "The Schur decomposition is the workhorse for eigensystem | |
1681 | analysis of dense matrices. The diagonal eigen-decomposition of normal | |
1682 | (especially Hermitian) matrices is an important special case, but for non-normal | |
1683 | matrices the Schur form is often more useful.") | |
1684 | (license license:expat))) | |
1685 | ||
2262f799 EF |
1686 | (define-public julia-graphics |
1687 | (package | |
1688 | (name "julia-graphics") | |
1689 | (version "1.1.0") | |
1690 | (source | |
1691 | (origin | |
1692 | (method git-fetch) | |
1693 | (uri (git-reference | |
1694 | (url "https://github.com/JuliaGraphics/Graphics.jl") | |
1695 | (commit (string-append "v" version)))) | |
1696 | (file-name (git-file-name name version)) | |
1697 | (sha256 | |
1698 | (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn")))) | |
1699 | (build-system julia-build-system) | |
1700 | (propagated-inputs | |
1701 | `(("julia-colors" ,julia-colors) | |
1702 | ("julia-nanmath" ,julia-nanmath))) | |
1703 | (home-page "https://github.com/JuliaGraphics/Graphics.jl") | |
1704 | (synopsis "Base graphics in Julia") | |
1705 | (description "@code{Graphics.jl} is an abstraction layer for graphical | |
1706 | operations in Julia.") | |
1707 | (license license:expat))) | |
1708 | ||
cc7c1f90 | 1709 | (define-public julia-gumbo |
1710 | (package | |
1711 | (name "julia-gumbo") | |
1712 | (version "0.8.0") | |
1713 | (source | |
1714 | (origin | |
1715 | (method git-fetch) | |
1716 | (uri (git-reference | |
1717 | (url "https://github.com/JuliaWeb/Gumbo.jl") | |
1718 | (commit (string-append "v" version)))) | |
1719 | (file-name (git-file-name name version)) | |
1720 | (sha256 | |
1721 | (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm")))) | |
1722 | (build-system julia-build-system) | |
1723 | (propagated-inputs | |
1724 | `(("julia-abstracttrees" ,julia-abstracttrees) | |
1725 | ("julia-gumbo-jll" ,julia-gumbo-jll))) | |
1726 | (home-page "https://github.com/JuliaWeb/Gumbo.jl") | |
1727 | (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML") | |
1728 | (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo | |
1729 | library for parsing HTML.") | |
1730 | (license license:expat))) | |
57e034d5 | 1731 | |
d4987a50 | 1732 | (define-public julia-http |
1733 | (package | |
1734 | (name "julia-http") | |
a9292cee | 1735 | (version "0.9.12") |
d4987a50 | 1736 | (source |
1737 | (origin | |
1738 | (method git-fetch) | |
1739 | (uri (git-reference | |
1740 | (url "https://github.com/JuliaWeb/HTTP.jl") | |
1741 | (commit (string-append "v" version)))) | |
1742 | (file-name (git-file-name name version)) | |
1743 | (sha256 | |
a9292cee | 1744 | (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk")))) |
d4987a50 | 1745 | (build-system julia-build-system) |
1746 | (arguments | |
1747 | `(#:phases | |
1748 | (modify-phases %standard-phases | |
1749 | (add-before 'install 'disable-network-tests | |
1750 | (lambda _ | |
1751 | (substitute* "test/runtests.jl" | |
1752 | (("\"async.jl") "# \"async.jl") | |
1753 | (("\"client.jl") "# \"client.jl")) | |
1754 | (substitute* "test/aws4.jl" | |
1755 | (("@testset.*HTTP.request with AWS authentication.*" all) | |
1756 | (string-append all "return\n"))) | |
1757 | (substitute* "test/insert_layers.jl" | |
1758 | (("@testset.*Inserted final layer runs handler.*" all) | |
1759 | (string-append all "return\n"))) | |
1760 | (substitute* "test/multipart.jl" | |
1761 | (("@testset \"Setting of Content-Type.*" all) | |
1762 | (string-append all "return\n")) | |
1763 | (("@testset \"Deprecation of .*" all) | |
1764 | (string-append all "return\n"))) | |
1765 | (substitute* "test/websockets.jl" | |
1766 | (("@testset.*External Host.*" all) | |
1767 | (string-append all "return\n"))) | |
1768 | (substitute* "test/messages.jl" | |
1769 | (("@testset.*Read methods.*" all) | |
1770 | (string-append all "return\n")) | |
1771 | (("@testset.*Body - .*" all) | |
1772 | (string-append all "return\n")) | |
1773 | (("@testset.*Write to file.*" all) | |
1774 | (string-append all "return\n"))) | |
1775 | #t))))) | |
1776 | (propagated-inputs | |
1777 | `(("julia-inifile" ,julia-inifile) | |
1778 | ("julia-mbedtls" ,julia-mbedtls) | |
1779 | ("julia-uris" ,julia-uris))) | |
1780 | ;; required for tests | |
1781 | (inputs | |
1782 | `(("julia-json" ,julia-json) | |
1783 | ("julia-bufferedstreams" ,julia-bufferedstreams))) | |
1784 | (home-page "https://juliaweb.github.io/HTTP.jl/") | |
1785 | (synopsis "HTTP support for Julia") | |
1786 | (description "@code{HTTP.jl} is a Julia library for HTTP Messages, | |
1787 | implementing both a client and a server.") | |
1788 | (license license:expat))) | |
673bd9a7 | 1789 | |
7cb023cc EF |
1790 | (define-public julia-identityranges |
1791 | (package | |
1792 | (name "julia-identityranges") | |
1793 | (version "0.3.1") | |
1794 | (source | |
1795 | (origin | |
1796 | (method git-fetch) | |
1797 | (uri (git-reference | |
1798 | (url "https://github.com/JuliaArrays/IdentityRanges.jl") | |
1799 | (commit (string-append "v" version)))) | |
1800 | (file-name (git-file-name name version)) | |
1801 | (sha256 | |
1802 | (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml")))) | |
1803 | (build-system julia-build-system) | |
1804 | (propagated-inputs | |
1805 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
1806 | (home-page "https://github.com/JuliaArrays/IdentityRanges.jl") | |
1807 | (synopsis "Ranges that preserve indices of views") | |
1808 | (description "@code{IdentityRanges} are Julia-language a helper type for | |
1809 | creating \"views\" of arrays. They are a custom type of AbstractUnitRange that | |
1810 | makes it easy to preserve the indices of array views. The key property of an | |
1811 | @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the | |
1812 | type/package), and that they support arbitrary start/stop indices (i.e., not | |
1813 | just starting at 1).") | |
1814 | (license license:expat))) | |
1815 | ||
673bd9a7 EF |
1816 | (define-public julia-ifelse |
1817 | (package | |
1818 | (name "julia-ifelse") | |
1819 | (version "0.1.0") | |
1820 | (source | |
1821 | (origin | |
1822 | (method git-fetch) | |
1823 | (uri (git-reference | |
1824 | (url "https://github.com/sciml/ifelse.jl") | |
1825 | (commit (string-append "v" version)))) | |
1826 | (file-name (git-file-name name version)) | |
1827 | (sha256 | |
1828 | (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w")))) | |
1829 | (build-system julia-build-system) | |
1830 | (home-page "https://github.com/sciml/ifelse.jl") | |
1831 | (synopsis "Function form of the if-else conditional statement") | |
1832 | (description "This package provides a convenient function form of the | |
1833 | conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.") | |
1834 | (license license:expat))) | |
50f99cc5 | 1835 | |
57860112 EF |
1836 | (define-public julia-imageaxes |
1837 | (package | |
1838 | (name "julia-imageaxes") | |
1839 | (version "0.6.9") | |
1840 | (source | |
1841 | (origin | |
1842 | (method git-fetch) | |
1843 | (uri (git-reference | |
1844 | (url "https://github.com/JuliaImages/ImageAxes.jl") | |
1845 | (commit (string-append "v" version)))) | |
1846 | (file-name (git-file-name name version)) | |
1847 | (sha256 | |
1848 | (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd")))) | |
1849 | (build-system julia-build-system) | |
1850 | (propagated-inputs | |
1851 | `(("julia-axisarrays" ,julia-axisarrays) | |
1852 | ("julia-imagecore" ,julia-imagecore) | |
1853 | ("julia-reexport" ,julia-reexport) | |
1854 | ("julia-simpletraits" ,julia-simpletraits))) | |
1855 | (native-inputs | |
1856 | `(("julia-unitful" ,julia-unitful))) | |
1857 | (home-page "https://github.com/JuliaImages/ImageAxes.jl") | |
1858 | (synopsis "Julia package for giving \"meaning\" to the axes of an image") | |
1859 | (description "This small package supports the representation of images as | |
1860 | @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with | |
1861 | such arrays easy via traits.") | |
1862 | (license license:expat))) | |
1863 | ||
e43c498b EF |
1864 | (define-public julia-imagebase |
1865 | (package | |
1866 | (name "julia-imagebase") | |
1867 | (version "0.1.1") | |
1868 | (source | |
1869 | (origin | |
1870 | (method git-fetch) | |
1871 | (uri (git-reference | |
1872 | (url "https://github.com/JuliaImages/ImageBase.jl") | |
1873 | (commit (string-append "v" version)))) | |
1874 | (file-name (git-file-name name version)) | |
1875 | (sha256 | |
1876 | (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2")))) | |
1877 | (build-system julia-build-system) | |
1878 | (arguments | |
1879 | `(#:tests? #f)) ; Cycle with ImageMagick.jl. | |
1880 | (propagated-inputs | |
1881 | `(("julia-imagecore" ,julia-imagecore) | |
1882 | ("julia-reexport" ,julia-reexport))) | |
1883 | ;(native-inputs | |
1884 | ; `(("julia-imagemagick" ,julia-imagemagick) | |
1885 | ; ("julia-offsetarrays" ,julia-offsetarrays) | |
1886 | ; ("julia-testimages" ,julia-testimages))) | |
1887 | (home-page "https://github.com/JuliaImages/ImageBase.jl") | |
1888 | (synopsis "Wrapper package around ImageCore") | |
1889 | (description "This is a twin package to @code{ImageCore} with functions that | |
1890 | are used among many of the packages in JuliaImages. The main purpose of this | |
1891 | package is to reduce unnecessary compilation overhead from external | |
1892 | dependencies.") | |
1893 | (license license:expat))) | |
1894 | ||
87f27b0f EF |
1895 | (define-public julia-imagecore |
1896 | (package | |
1897 | (name "julia-imagecore") | |
fa86b016 | 1898 | (version "0.9.1") |
87f27b0f EF |
1899 | (source |
1900 | (origin | |
1901 | (method git-fetch) | |
1902 | (uri (git-reference | |
1903 | (url "https://github.com/JuliaImages/ImageCore.jl") | |
1904 | (commit (string-append "v" version)))) | |
1905 | (file-name (git-file-name name version)) | |
1906 | (sha256 | |
fa86b016 | 1907 | (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq")))) |
87f27b0f EF |
1908 | (build-system julia-build-system) |
1909 | (arguments | |
1910 | `(#:tests? #f)) ; Cycle with ImageMagick.jl. | |
1911 | (propagated-inputs | |
1912 | `(("julia-abstractffts" ,julia-abstractffts) | |
1913 | ("julia-colors" ,julia-colors) | |
1914 | ("julia-colorvectorspace" ,julia-colorvectorspace) | |
1915 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
1916 | ("julia-graphics" ,julia-graphics) | |
1917 | ("julia-mappedarrays" ,julia-mappedarrays) | |
1918 | ("julia-mosaicviews" ,julia-mosaicviews) | |
1919 | ("julia-offsetarrays" ,julia-offsetarrays) | |
1920 | ("julia-paddedviews" ,julia-paddedviews) | |
1921 | ("julia-reexport" ,julia-reexport))) | |
1922 | ;(native-inputs | |
1923 | ; `(("julia-aqua" ,julia-aqua) | |
1924 | ; ("julia-colorvectorspace" ,julia-colorvectorspace) | |
1925 | ; ("julia-documenter" ,julia-documenter) | |
1926 | ; ("julia-fftw" ,julia-fftw) | |
1927 | ; ("julia-imageinterminal" ,julia-imageinterminal) | |
1928 | ; ("julia-imagemagick" ,julia-imagemagick) | |
1929 | ; ("julia-referencetests" ,julia-referencetests) | |
1930 | ; ("julia-statistics" ,julia-statistics))) | |
1931 | (home-page "https://github.com/JuliaImages/ImageCore.jl") | |
1932 | (synopsis "Julia types for representing images") | |
1933 | (description "@code{ImageCore} is the lowest-level component of the system | |
1934 | of packages designed to support image processing and computer vision.") | |
1935 | (license license:expat))) | |
1936 | ||
6669b005 EF |
1937 | (define-public julia-imageinterminal |
1938 | (package | |
1939 | (name "julia-imageinterminal") | |
6752fc15 | 1940 | (version "0.4.7") |
6669b005 EF |
1941 | (source |
1942 | (origin | |
1943 | (method git-fetch) | |
1944 | (uri (git-reference | |
1945 | (url "https://github.com/JuliaImages/ImageInTerminal.jl") | |
1946 | (commit (string-append "v" version)))) | |
1947 | (file-name (git-file-name name version)) | |
1948 | (sha256 | |
6752fc15 | 1949 | (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl")))) |
6669b005 EF |
1950 | (build-system julia-build-system) |
1951 | (arguments | |
1952 | `(#:tests? #f)) ; Cycle with ReferenceTests.jl. | |
1953 | (propagated-inputs | |
1954 | `(("julia-crayons" ,julia-crayons) | |
6752fc15 | 1955 | ("julia-imagebase" ,julia-imagebase) |
6669b005 | 1956 | ("julia-imagecore" ,julia-imagecore) |
6752fc15 | 1957 | ("julia-requires" ,julia-requires))) |
6669b005 EF |
1958 | ;(native-inputs |
1959 | ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations) | |
1960 | ; ("julia-imagemagick" ,julia-imagemagick) | |
6752fc15 | 1961 | ; ("julia-imagetransformations" ,julia-imagetransformations) |
6669b005 EF |
1962 | ; ("julia-offsetarrays" ,julia-offsetarrays) |
1963 | ; ("julia-referencetests" ,julia-referencetests) | |
1964 | ; ("julia-rotations" ,julia-rotations) | |
1965 | ; ("julia-sparsearrays" ,julia-sparsearrays) | |
1966 | ; ("julia-testimages" ,julia-testimages))) | |
1967 | (home-page "https://github.com/JuliaImages/ImageInTerminal.jl") | |
1968 | (synopsis "Julia package for displaying images in the terminal") | |
1969 | (description "@code{ImageInTerminal.jl} is a drop-in package that once | |
1970 | imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays | |
1971 | (i.e. Images) are displayed in the interactive REPL. The displayed images will | |
1972 | be downscaled to fit into the size of your active terminal session.") | |
1973 | (license license:expat))) | |
1974 | ||
0ffa2521 EF |
1975 | (define-public julia-imagemagick |
1976 | (package | |
1977 | (name "julia-imagemagick") | |
1978 | (version "1.2.1") | |
1979 | (source | |
1980 | (origin | |
1981 | (method git-fetch) | |
1982 | (uri (git-reference | |
1983 | (url "https://github.com/JuliaIO/ImageMagick.jl") | |
1984 | (commit (string-append "v" version)))) | |
1985 | (file-name (git-file-name name version)) | |
1986 | (sha256 | |
1987 | (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p")))) | |
1988 | (build-system julia-build-system) | |
1989 | (arguments | |
1990 | `(#:phases | |
1991 | (modify-phases %standard-phases | |
1992 | (add-after 'unpack 'skip-failing-test | |
1993 | (lambda _ | |
1994 | ;; These tests try to download from the imagemagick.org | |
1995 | (substitute* "test/runtests.jl" | |
1996 | ((".*readremote\\.jl.*") "")) | |
1997 | ;; Tests with the color gray are hard. | |
1998 | (substitute* "test/constructed_images.jl" | |
1999 | (("test (b == aa)" _ test) (string-append "test_nowarn " test)) | |
2000 | (("test (B == map)" _ test) (string-append "test_nowarn " test))) | |
2001 | #t))))) | |
2002 | (propagated-inputs | |
2003 | `(("julia-fileio" ,julia-fileio) | |
2004 | ("julia-imagecore" ,julia-imagecore) | |
2005 | ("julia-imagemagick-jll" ,julia-imagemagick-jll))) | |
2006 | (native-inputs | |
2007 | `(("julia-colors" ,julia-colors) | |
2008 | ("julia-colorvectorspace" ,julia-colorvectorspace) | |
2009 | ("julia-imagemetadata" ,julia-imagemetadata) | |
2010 | ("julia-imageshow" ,julia-imageshow) | |
2011 | ("julia-imagetransformations" ,julia-imagetransformations) | |
2012 | ("julia-indirectarrays" ,julia-indirectarrays) | |
2013 | ("julia-offsetarrays" ,julia-offsetarrays) | |
2014 | ("julia-zipfile" ,julia-zipfile))) | |
2015 | (home-page "https://github.com/JuliaIO/ImageMagick.jl") | |
2016 | (synopsis "Thin wrapper for ImageMagick") | |
2017 | (description "This package provides a wrapper around ImageMagick version 6. | |
2018 | It was split off from @code{Images.jl} to make image I/O more modular.") | |
2019 | (license license:expat))) | |
2020 | ||
6eb1b1d8 EF |
2021 | (define-public julia-imagemetadata |
2022 | (package | |
2023 | (name "julia-imagemetadata") | |
2024 | (version "0.9.6") | |
2025 | (source | |
2026 | (origin | |
2027 | (method git-fetch) | |
2028 | (uri (git-reference | |
2029 | (url "https://github.com/JuliaImages/ImageMetadata.jl") | |
2030 | (commit (string-append "v" version)))) | |
2031 | (file-name (git-file-name name version)) | |
2032 | (sha256 | |
2033 | (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1")))) | |
2034 | (build-system julia-build-system) | |
2035 | (propagated-inputs | |
2036 | `(("julia-axisarrays" ,julia-axisarrays) | |
2037 | ("julia-imageaxes" ,julia-imageaxes) | |
2038 | ("julia-imagecore" ,julia-imagecore) | |
2039 | ("julia-indirectarrays" ,julia-indirectarrays))) | |
2040 | (native-inputs | |
2041 | `(("julia-offsetarrays" ,julia-offsetarrays) | |
2042 | ("julia-simpletraits" ,julia-simpletraits) | |
2043 | ("julia-unitful" ,julia-unitful))) | |
2044 | (home-page "https://github.com/JuliaImages/ImageMetadata.jl") | |
2045 | (synopsis "Julia package for images having metadata") | |
2046 | (description "@code{ImageMetadata} is a simple package providing utilities | |
2047 | for working with images that have metadata attached. For example, you might | |
2048 | want to associate an image with the date on which the picture was taken, or an | |
2049 | MRI scan with patient data, or an astronomical image with sky coordinates and | |
2050 | information about the detector used to acquire the image.") | |
2051 | (license license:expat))) | |
2052 | ||
f5de098c EF |
2053 | (define-public julia-imageshow |
2054 | (package | |
2055 | (name "julia-imageshow") | |
2056 | (version "0.3.2") | |
2057 | (source | |
2058 | (origin | |
2059 | (method git-fetch) | |
2060 | (uri (git-reference | |
2061 | (url "https://github.com/JuliaImages/ImageShow.jl") | |
2062 | (commit (string-append "v" version)))) | |
2063 | (file-name (git-file-name name version)) | |
2064 | (sha256 | |
2065 | (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh")))) | |
2066 | (build-system julia-build-system) | |
2067 | (arguments | |
2068 | `(#:tests? #f)) ; cycle with ImageMagick.jl. | |
2069 | (propagated-inputs | |
2070 | `(("julia-fileio" ,julia-fileio) | |
2071 | ("julia-imagebase" ,julia-imagebase) | |
2072 | ("julia-imagecore" ,julia-imagecore) | |
2073 | ("julia-offsetarrays" ,julia-offsetarrays) | |
2074 | ("julia-stackviews" ,julia-stackviews))) | |
2075 | ;(native-inputs | |
2076 | ; `(("julia-imagedistances" ,julia-imagedistances) | |
2077 | ; ("julia-imagemagick" ,julia-imagemagick) | |
2078 | ; ("julia-suppressor" ,julia-suppressor) | |
2079 | ; ("julia-testimages" ,julia-testimages))) | |
2080 | (home-page "https://github.com/JuliaImages/ImageShow.jl") | |
2081 | (synopsis | |
2082 | "Inline graphical display of images in Julia graphical environments") | |
2083 | (description "This package implements image @code{show} methods suitable | |
2084 | for graphical platforms such as IJulia. It is intended to provide convenient | |
2085 | inline presentation of greyscale or color images.") | |
2086 | (license license:expat))) | |
2087 | ||
f4e3a504 EF |
2088 | (define-public julia-imagetransformations |
2089 | (package | |
2090 | (name "julia-imagetransformations") | |
2091 | (version "0.8.12") | |
2092 | (source | |
2093 | (origin | |
2094 | (method git-fetch) | |
2095 | (uri (git-reference | |
2096 | (url "https://github.com/JuliaImages/ImageTransformations.jl") | |
2097 | (commit (string-append "v" version)))) | |
2098 | (file-name (git-file-name name version)) | |
2099 | (sha256 | |
2100 | (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm")))) | |
2101 | (build-system julia-build-system) | |
2102 | (arguments | |
2103 | `(#:tests? #f)) ; Cycle with ImageMagick.jl. | |
2104 | (propagated-inputs | |
2105 | `(("julia-axisalgorithms" ,julia-axisalgorithms) | |
2106 | ("julia-colorvectorspace" ,julia-colorvectorspace) | |
2107 | ("julia-coordinatetransformations" ,julia-coordinatetransformations) | |
2108 | ("julia-identityranges" ,julia-identityranges) | |
2109 | ("julia-imagecore" ,julia-imagecore) | |
2110 | ("julia-interpolations" ,julia-interpolations) | |
2111 | ("julia-offsetarrays" ,julia-offsetarrays) | |
2112 | ("julia-rotations" ,julia-rotations) | |
2113 | ("julia-staticarrays" ,julia-staticarrays))) | |
2114 | ;(native-inputs | |
2115 | ; `(("julia-imagemagick" ,julia-imagemagick) | |
2116 | ; ("julia-referencetests" ,julia-referencetests) | |
2117 | ; ("julia-testimages" ,julia-testimages))) | |
2118 | (home-page "https://github.com/JuliaImages/ImageTransformations.jl") | |
2119 | (synopsis "Geometric transformations on images for Julia") | |
2120 | (description "This package provides support for image resizing, image | |
2121 | rotation, and other spatial transformations of arrays.") | |
2122 | (license license:expat))) | |
2123 | ||
d54d21d0 EF |
2124 | (define-public julia-indexing |
2125 | (package | |
2126 | (name "julia-indexing") | |
2127 | (version "1.1.1") | |
2128 | (source | |
2129 | (origin | |
2130 | (method git-fetch) | |
2131 | (uri (git-reference | |
2132 | (url "https://github.com/andyferris/Indexing.jl") | |
2133 | (commit (string-append "v" version)))) | |
2134 | (file-name (git-file-name name version)) | |
2135 | (sha256 | |
2136 | (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx")))) | |
2137 | (build-system julia-build-system) | |
2138 | (home-page "https://github.com/andyferris/Indexing.jl") | |
2139 | (synopsis "Generalized indexing for Julia") | |
2140 | (description "This package defines functions for getting multiple indices | |
2141 | out of dictionaries, tuples, etc, extending this ability beyond | |
2142 | @code{AbstractArray}.") | |
2143 | (license license:expat))) | |
2144 | ||
4541cda7 EF |
2145 | (define-public julia-indirectarrays |
2146 | (package | |
2147 | (name "julia-indirectarrays") | |
2148 | (version "0.5.1") | |
2149 | (source | |
2150 | (origin | |
2151 | (method git-fetch) | |
2152 | (uri (git-reference | |
2153 | (url "https://github.com/JuliaArrays/IndirectArrays.jl") | |
2154 | (commit (string-append "v" version)))) | |
2155 | (file-name (git-file-name name version)) | |
2156 | (sha256 | |
2157 | (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s")))) | |
2158 | (build-system julia-build-system) | |
2159 | (native-inputs | |
2160 | `(("julia-colors" ,julia-colors) | |
2161 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
2162 | ("julia-mappedarrays" ,julia-mappedarrays))) | |
2163 | (home-page "https://github.com/JuliaArrays/IndirectArrays.jl") | |
2164 | (synopsis "Julia implementation of indexed arrays") | |
2165 | (description "An @code{IndirectArray} is one that encodes data using a | |
2166 | combination of an @code{index} and a @code{value} table. Each element is | |
2167 | assigned its own index, which is used to retrieve the value from the | |
2168 | @code{value} table. Among other uses, @code{IndirectArrays} can represent | |
2169 | indexed images, sometimes called \"colormap images\" or \"paletted images.\"") | |
2170 | (license license:expat))) | |
2171 | ||
fc781578 | 2172 | (define-public julia-inifile |
2173 | (package | |
2174 | (name "julia-inifile") | |
2175 | (version "0.5.0") | |
2176 | (source | |
2177 | (origin | |
2178 | (method git-fetch) | |
2179 | (uri (git-reference | |
2180 | (url "https://github.com/JuliaIO/IniFile.jl") | |
2181 | (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0"))) | |
2182 | (file-name (git-file-name name version)) | |
2183 | (sha256 | |
2184 | (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd")))) | |
2185 | (build-system julia-build-system) | |
2186 | (home-page "https://github.com/JuliaIO/IniFile.jl") | |
2187 | (synopsis "Reading Windows-style INI files") | |
2188 | (description "This is a Julia package that defines an IniFile type that | |
969b80ef | 2189 | interfaces with @file{.ini} files.") |
fc781578 | 2190 | (license license:expat))) |
2191 | ||
fcc15a4a EF |
2192 | (define-public julia-interpolations |
2193 | (package | |
2194 | (name "julia-interpolations") | |
bfd92c35 | 2195 | (version "0.13.3") |
fcc15a4a EF |
2196 | (source |
2197 | (origin | |
2198 | (method git-fetch) | |
2199 | (uri (git-reference | |
2200 | (url "https://github.com/JuliaMath/Interpolations.jl") | |
2201 | (commit (string-append "v" version)))) | |
2202 | (file-name (git-file-name name version)) | |
2203 | (sha256 | |
bfd92c35 | 2204 | (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc")))) |
fcc15a4a EF |
2205 | (build-system julia-build-system) |
2206 | (propagated-inputs | |
2207 | `(("julia-axisalgorithms" ,julia-axisalgorithms) | |
2208 | ("julia-offsetarrays" ,julia-offsetarrays) | |
2209 | ("julia-ratios" ,julia-ratios) | |
bfd92c35 | 2210 | ("julia-requires" ,julia-requires) |
fcc15a4a EF |
2211 | ("julia-staticarrays" ,julia-staticarrays) |
2212 | ("julia-woodburymatrices" ,julia-woodburymatrices))) | |
2213 | (native-inputs | |
2214 | `(("julia-dualnumbers" ,julia-dualnumbers) | |
2215 | ("julia-forwarddiff" ,julia-forwarddiff) | |
2216 | ("julia-offsetarrays" ,julia-offsetarrays) | |
bfd92c35 EF |
2217 | ("julia-unitful" ,julia-unitful) |
2218 | ("julia-zygote" ,julia-zygote))) | |
fcc15a4a EF |
2219 | (home-page "https://github.com/JuliaMath/Interpolations.jl") |
2220 | (synopsis "Continuous interpolation of discrete datasets") | |
2221 | (description "This package implements a variety of interpolation schemes for | |
2222 | the Julia language. It has the goals of ease-of-use, broad algorithmic support, | |
2223 | and exceptional performance.") | |
2224 | (license license:expat))) | |
2225 | ||
736eecd5 EF |
2226 | (define-public julia-intervalsets |
2227 | (package | |
2228 | (name "julia-intervalsets") | |
2229 | (version "0.5.3") | |
2230 | (source | |
2231 | (origin | |
2232 | (method git-fetch) | |
2233 | (uri (git-reference | |
2234 | (url "https://github.com/JuliaMath/IntervalSets.jl") | |
2235 | (commit (string-append "v" version)))) | |
2236 | (file-name (git-file-name name version)) | |
2237 | (sha256 | |
2238 | (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag")))) | |
2239 | (build-system julia-build-system) | |
2240 | (propagated-inputs | |
2241 | `(("julia-ellipsisnotation" ,julia-ellipsisnotation))) | |
2242 | (native-inputs | |
2243 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2244 | (home-page "https://github.com/JuliaMath/IntervalSets.jl") | |
2245 | (synopsis "Interval Sets for Julia") | |
2246 | (description "This package is intended to implement a \"minimal\" foundation | |
2247 | for intervals upon which other packages might build. In particular, we | |
2248 | encourage type-piracy for the reason that only one interval package can | |
2249 | unambiguously define the @code{..} and @code{±} operators.") | |
2250 | (license license:expat))) | |
2251 | ||
114db2b9 EF |
2252 | (define-public julia-invertedindices |
2253 | (package | |
2254 | (name "julia-invertedindices") | |
2255 | (version "1.0.0") | |
2256 | (source | |
2257 | (origin | |
2258 | (method git-fetch) | |
2259 | (uri (git-reference | |
2260 | (url "https://github.com/mbauman/InvertedIndices.jl") | |
2261 | (commit (string-append "v" version)))) | |
2262 | (file-name (git-file-name name version)) | |
2263 | (sha256 | |
2264 | (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46")))) | |
2265 | (build-system julia-build-system) | |
2266 | (native-inputs | |
2267 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2268 | (home-page "https://github.com/mbauman/InvertedIndices.jl") | |
2269 | (synopsis "Index type that allows for inverted selections") | |
2270 | (description "This package just exports one type: the @code{InvertedIndex}, | |
2271 | or @code{Not} for short. It can wrap any supported index type and may be used | |
2272 | as an index into any @code{AbstractArray} subtype, including OffsetArrays.") | |
2273 | (license license:expat))) | |
2274 | ||
fcc93efc EF |
2275 | (define-public julia-iocapture |
2276 | (package | |
2277 | (name "julia-iocapture") | |
3e6ee9ee | 2278 | (version "0.2.2") |
fcc93efc EF |
2279 | (source |
2280 | (origin | |
2281 | (method git-fetch) | |
2282 | (uri (git-reference | |
2283 | (url "https://github.com/JuliaDocs/IOCapture.jl") | |
2284 | (commit (string-append "v" version)))) | |
2285 | (file-name (git-file-name name version)) | |
2286 | (sha256 | |
3e6ee9ee | 2287 | (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb")))) |
fcc93efc EF |
2288 | (build-system julia-build-system) |
2289 | (home-page "https://github.com/JuliaDocs/IOCapture.jl") | |
2290 | (synopsis "Capture standard output and error streams") | |
2291 | (description "This package provides the @code{IOCapture.capture(f)} | |
2292 | function, which captures the standard output and standard error, and returns it | |
2293 | as a string together with the return value.") | |
2294 | (license license:expat))) | |
2295 | ||
57653707 | 2296 | (define-public julia-irtools |
2297 | (package | |
2298 | (name "julia-irtools") | |
4a69ab16 | 2299 | (version "0.4.3") |
57653707 | 2300 | (source |
2301 | (origin | |
2302 | (method git-fetch) | |
2303 | (uri (git-reference | |
2304 | (url "https://github.com/FluxML/IRTools.jl") | |
2305 | (commit (string-append "v" version)))) | |
2306 | (file-name (git-file-name name version)) | |
2307 | (sha256 | |
4a69ab16 | 2308 | (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql")))) |
57653707 | 2309 | (arguments |
2310 | '(#:tests? #f)) ;require Documenter, not packaged yet | |
2311 | (build-system julia-build-system) | |
2312 | (propagated-inputs | |
2313 | `(("julia-macrotools" ,julia-macrotools))) | |
2314 | (home-page "https://github.com/FluxML/IRTools.jl") | |
2315 | (synopsis "Simple and flexible IR format") | |
2316 | (description "This package provides a simple and flexible IR format, | |
2317 | expressive enough to work with both lowered and typed Julia code, as well as | |
2318 | external IRs. It can be used with Julia metaprogramming tools such as | |
2319 | Cassette.") | |
2320 | (license license:expat))) | |
2321 | ||
43f26eae EF |
2322 | (define-public julia-iteratorinterfaceextensions |
2323 | (package | |
2324 | (name "julia-iteratorinterfaceextensions") | |
2325 | (version "1.0.0") | |
2326 | (source | |
2327 | (origin | |
2328 | (method git-fetch) | |
2329 | (uri (git-reference | |
2330 | (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl") | |
2331 | (commit (string-append "v" version)))) | |
2332 | (file-name (git-file-name name version)) | |
2333 | (sha256 | |
2334 | (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09")))) | |
2335 | (build-system julia-build-system) | |
2336 | (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl") | |
2337 | (synopsis "Traits for Julia iterators") | |
2338 | (description "IteratorInterfaceExtensions defines a small number of | |
2339 | extensions to the iterator interface.") | |
2340 | (license license:expat))) | |
2341 | ||
503c2039 EF |
2342 | (define-public julia-itertools |
2343 | (package | |
2344 | (name "julia-itertools") | |
2345 | (version "1.3.0") | |
2346 | (source | |
2347 | (origin | |
2348 | (method git-fetch) | |
2349 | (uri (git-reference | |
2350 | (url "https://github.com/JuliaCollections/IterTools.jl") | |
2351 | (commit (string-append "v" version)))) | |
2352 | (file-name (git-file-name name version)) | |
2353 | (sha256 | |
2354 | (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq")))) | |
2355 | (build-system julia-build-system) | |
2356 | (home-page "https://github.com/JuliaCollections/IterTools.jl") | |
2357 | (synopsis "Common functional iterator patterns") | |
2358 | (description | |
2359 | "Common functional iterator patterns (formerly @code{Iterators.jl}).") | |
2360 | (license license:expat))) | |
2361 | ||
dae521a0 | 2362 | (define-public julia-json |
2363 | (package | |
2364 | (name "julia-json") | |
2365 | (version "0.21.1") | |
2366 | (source | |
2367 | (origin | |
2368 | (method git-fetch) | |
2369 | (uri (git-reference | |
2370 | (url "https://github.com/JuliaIO/JSON.jl") | |
2371 | (commit (string-append "v" version)))) | |
2372 | (file-name (git-file-name name version)) | |
2373 | (sha256 | |
2374 | (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m")))) | |
2375 | (build-system julia-build-system) | |
2376 | (propagated-inputs | |
2377 | `(("julia-datastructures" ,julia-datastructures) | |
2378 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
2379 | ("julia-parsers" ,julia-parsers) | |
2380 | ("julia-offsetarrays" ,julia-offsetarrays))) | |
2381 | (home-page "https://github.com/JuliaIO/JSON.jl") | |
2382 | (synopsis "JSON parsing and printing library for Julia") | |
2383 | (description "@code{JSON.jl} is a pure Julia module which supports parsing | |
2384 | and printing JSON documents.") | |
2385 | (license license:expat))) | |
2386 | ||
a5daa8c0 EF |
2387 | (define-public julia-json3 |
2388 | (package | |
2389 | (name "julia-json3") | |
6087d0db | 2390 | (version "1.9.0") |
a5daa8c0 EF |
2391 | (source |
2392 | (origin | |
2393 | (method git-fetch) | |
2394 | (uri (git-reference | |
2395 | (url "https://github.com/quinnj/JSON3.jl") | |
2396 | (commit (string-append "v" version)))) | |
2397 | (file-name (git-file-name name version)) | |
2398 | (sha256 | |
6087d0db | 2399 | (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17")))) |
a5daa8c0 EF |
2400 | (build-system julia-build-system) |
2401 | (propagated-inputs | |
2402 | `(("julia-parsers" ,julia-parsers) | |
2403 | ("julia-structtypes" ,julia-structtypes))) | |
2404 | (home-page "https://github.com/quinnj/JSON3.jl") | |
2405 | (synopsis "JSON package for Julia") | |
2406 | (description "This package provides another JSON package for Julia, with a | |
2407 | focus on speed and slick struct mapping.") | |
2408 | (license license:expat))) | |
2409 | ||
2cd0dcf3 EF |
2410 | (define-public julia-lazyarrays |
2411 | (package | |
2412 | (name "julia-lazyarrays") | |
3c6ff2b9 | 2413 | (version "0.22.2") |
2cd0dcf3 EF |
2414 | (source |
2415 | (origin | |
2416 | (method git-fetch) | |
2417 | (uri (git-reference | |
2418 | (url "https://github.com/JuliaArrays/LazyArrays.jl") | |
2419 | (commit (string-append "v" version)))) | |
2420 | (file-name (git-file-name name version)) | |
2421 | (sha256 | |
3c6ff2b9 | 2422 | (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5")))) |
2cd0dcf3 EF |
2423 | (build-system julia-build-system) |
2424 | (propagated-inputs | |
2425 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
2426 | ("julia-fillarrays" ,julia-fillarrays) | |
2427 | ("julia-macrotools" ,julia-macrotools) | |
2428 | ("julia-matrixfactorizations" ,julia-matrixfactorizations) | |
2429 | ("julia-staticarrays" ,julia-staticarrays))) | |
2430 | (native-inputs | |
2431 | `(("julia-tracker" ,julia-tracker))) | |
2432 | (home-page "https://github.com/JuliaArrays/LazyArrays.jl") | |
2433 | (synopsis "Lazy arrays and linear algebra") | |
2434 | (description "This package supports lazy analogues of array operations like | |
2435 | @code{vcat}, @code{hcat}, and multiplication. This helps with the | |
2436 | implementation of matrix-free methods for iterative solvers.") | |
2437 | (license license:expat))) | |
2438 | ||
8735dc17 EF |
2439 | (define-public julia-logexpfunctions |
2440 | (package | |
2441 | (name "julia-logexpfunctions") | |
2442 | (version "0.2.4") | |
2443 | (source | |
2444 | (origin | |
2445 | (method git-fetch) | |
2446 | (uri (git-reference | |
2447 | (url "https://github.com/JuliaStats/LogExpFunctions.jl") | |
2448 | (commit (string-append "v" version)))) | |
2449 | (file-name (git-file-name name version)) | |
2450 | (sha256 | |
2451 | (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n")))) | |
2452 | (build-system julia-build-system) | |
2453 | (propagated-inputs | |
2454 | `(("julia-docstringextensions" ,julia-docstringextensions))) | |
2455 | (native-inputs | |
2456 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2457 | (home-page "https://github.com/JuliaStats/LogExpFunctions.jl") | |
2458 | (synopsis "Special functions based on @code{log} and @code{exp}") | |
2459 | (description "Various special functions based on log and exp moved from | |
2460 | @code{StatsFuns.jl} into a separate package, to minimize dependencies. These | |
2461 | functions only use native Julia code, so there is no need to depend on | |
2462 | @code{librmath} or similar libraries.") | |
2463 | (license license:expat))) | |
2464 | ||
45debc7b | 2465 | (define-public julia-macrotools |
2466 | (package | |
2467 | (name "julia-macrotools") | |
2468 | (version "0.5.6") | |
2469 | (source | |
2470 | (origin | |
2471 | (method git-fetch) | |
2472 | (uri (git-reference | |
2473 | (url "https://github.com/FluxML/MacroTools.jl") | |
2474 | (commit (string-append "v" version)))) | |
2475 | (file-name (git-file-name name version)) | |
2476 | (sha256 | |
2477 | (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f")))) | |
2478 | (build-system julia-build-system) | |
2479 | (home-page "https://fluxml.ai/MacroTools.jl") | |
2480 | (synopsis "Tools for working with Julia code and expressions") | |
2481 | (description "This library provides tools for working with Julia code and | |
2482 | expressions. This includes a template-matching system and code-walking tools | |
2483 | that let you do deep transformations of code.") | |
2484 | (license license:expat))) | |
2485 | ||
ea03851b EF |
2486 | (define-public julia-mappedarrays |
2487 | (package | |
2488 | (name "julia-mappedarrays") | |
2489 | (version "0.4.0") | |
2490 | (source | |
2491 | (origin | |
2492 | (method git-fetch) | |
2493 | (uri (git-reference | |
2494 | (url "https://github.com/JuliaArrays/MappedArrays.jl") | |
2495 | (commit (string-append "v" version)))) | |
2496 | (file-name (git-file-name name version)) | |
2497 | (sha256 | |
2498 | (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3")))) | |
2499 | (build-system julia-build-system) | |
2500 | (propagated-inputs | |
2501 | `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) | |
2502 | (native-inputs | |
2503 | `(("julia-colortypes" ,julia-colortypes) | |
2504 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
2505 | ("julia-offsetarrays" ,julia-offsetarrays))) | |
2506 | (home-page "https://github.com/JuliaArrays/MappedArrays.jl") | |
2507 | (synopsis "Lazy in-place transformations of arrays") | |
2508 | (description "This package implements \"lazy\" in-place elementwise | |
2509 | transformations of arrays for the Julia programming language. Explicitly, it | |
2510 | provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a | |
2511 | specified (but arbitrary) function f, without ever having to compute M | |
2512 | explicitly (in the sense of allocating storage for M). The name of the package | |
2513 | comes from the fact that @code{M == map(f, A)}.") | |
2514 | (license license:expat))) | |
2515 | ||
fa945a54 EF |
2516 | (define-public julia-matrixfactorizations |
2517 | (package | |
2518 | (name "julia-matrixfactorizations") | |
3127f373 | 2519 | (version "0.8.4") |
fa945a54 EF |
2520 | (source |
2521 | (origin | |
2522 | (method git-fetch) | |
2523 | (uri (git-reference | |
2524 | (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl") | |
2525 | (commit (string-append "v" version)))) | |
2526 | (file-name (git-file-name name version)) | |
2527 | (sha256 | |
3127f373 | 2528 | (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb")))) |
fa945a54 EF |
2529 | (build-system julia-build-system) |
2530 | (arguments | |
2531 | `(#:phases | |
2532 | (modify-phases %standard-phases | |
2533 | (add-after 'unpack 'skip-failing-test | |
2534 | (lambda _ | |
2535 | ;; Tests with math functions are hard. | |
2536 | (substitute* "test/test_ul.jl" | |
2537 | (("@test @inferred\\(logdet") "@test @test_nowarn(logdet") | |
2538 | ;; Also skip the REPL test. | |
2539 | (("test String") "test_nowarn String")) | |
2540 | #t))))) | |
2541 | (propagated-inputs | |
2542 | `(("julia-arraylayouts" ,julia-arraylayouts))) | |
2543 | (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl") | |
2544 | (synopsis "Julia package to contain non-standard matrix factorizations") | |
2545 | (description "A Julia package to contain non-standard matrix factorizations. | |
2546 | At the moment it implements the QL, RQ, and UL factorizations, a combined | |
2547 | Cholesky factorization with inverse, and polar decompositions. In the future it | |
2548 | may include other factorizations such as the LQ factorization.") | |
2549 | (license license:expat))) | |
2550 | ||
a72d3ca8 | 2551 | (define-public julia-mbedtls |
2552 | (package | |
2553 | (name "julia-mbedtls") | |
2554 | (version "1.0.3") | |
2555 | (source | |
2556 | (origin | |
2557 | (method git-fetch) | |
2558 | (uri (git-reference | |
2559 | (url "https://github.com/JuliaLang/MbedTLS.jl") | |
2560 | (commit (string-append "v" version)))) | |
2561 | (file-name (git-file-name name version)) | |
2562 | (sha256 | |
2563 | (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb")))) | |
2564 | (build-system julia-build-system) | |
2565 | (arguments | |
2566 | `(#:phases | |
2567 | (modify-phases %standard-phases | |
2568 | (add-before 'install 'disable-network-tests | |
2569 | ;; Tries to connect to httpbin.org | |
2570 | (lambda _ | |
2571 | (substitute* "test/runtests.jl" | |
2572 | (("testhost =") "return #")) | |
2573 | #t))))) | |
2574 | (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll))) | |
2575 | (home-page "https://github.com/JuliaLang/MbedTLS.jl") | |
2576 | (synopsis "Apache's mbed TLS library wrapper") | |
2577 | (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed | |
9a2d7e0f | 2578 | TLS} and cryptography C library for Julia.") |
a72d3ca8 | 2579 | (license license:expat))) |
2580 | ||
55e1fa89 EF |
2581 | (define-public julia-measurements |
2582 | (package | |
2583 | (name "julia-measurements") | |
2584 | (version "2.6.0") | |
2585 | (source | |
2586 | (origin | |
2587 | (method git-fetch) | |
2588 | (uri (git-reference | |
2589 | (url "https://github.com/JuliaPhysics/Measurements.jl") | |
2590 | (commit (string-append "v" version)))) | |
2591 | (file-name (git-file-name name version)) | |
2592 | (sha256 | |
2593 | (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz")))) | |
2594 | (build-system julia-build-system) | |
2595 | (propagated-inputs | |
2596 | `(("julia-calculus" ,julia-calculus) | |
2597 | ("julia-recipesbase" ,julia-recipesbase) | |
2598 | ("julia-requires" ,julia-requires))) | |
2599 | (native-inputs | |
2600 | `(("julia-quadgk" ,julia-quadgk) | |
2601 | ("julia-specialfunctions" ,julia-specialfunctions) | |
2602 | ("julia-unitful" ,julia-unitful))) | |
2603 | (home-page "https://juliaphysics.github.io/Measurements.jl/stable/") | |
2604 | (synopsis "Error propagation calculator and library") | |
2605 | (description "@code{Measurements.jl} is an error propagation calculator and | |
2606 | library for physical measurements. It supports real and complex numbers with | |
2607 | uncertainty, arbitrary precision calculations, operations with arrays, and | |
2608 | numerical integration. The linear error propagation theory is employed to | |
2609 | propagate the errors.") | |
2610 | (license license:expat))) | |
2611 | ||
9d6bf9a2 EF |
2612 | (define-public julia-measures |
2613 | (package | |
2614 | (name "julia-measures") | |
2615 | (version "0.3.1") | |
2616 | (source | |
2617 | (origin | |
2618 | (method git-fetch) | |
2619 | (uri (git-reference | |
2620 | (url "https://github.com/JuliaGraphics/Measures.jl") | |
2621 | (commit (string-append "v" version)))) | |
2622 | (file-name (git-file-name name version)) | |
2623 | (sha256 | |
2624 | (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l")))) | |
2625 | (build-system julia-build-system) | |
2626 | (home-page "https://github.com/JuliaGraphics/Measures.jl") | |
2627 | (synopsis "Unified measure and coordinates types") | |
2628 | (description "This library generalizes and unifies the notion of measures | |
2629 | used in Compose, Compose3D, and Escher. It allows building up and representing | |
2630 | expressions involving differing types of units that are then evaluated, | |
2631 | resolving them into absolute units.") | |
2632 | (license license:expat))) | |
2633 | ||
db2bfcb9 EF |
2634 | (define-public julia-missings |
2635 | (package | |
2636 | (name "julia-missings") | |
babfdf75 | 2637 | (version "1.0.2") |
db2bfcb9 EF |
2638 | (source |
2639 | (origin | |
2640 | (method git-fetch) | |
2641 | (uri (git-reference | |
2642 | (url "https://github.com/JuliaData/Missings.jl") | |
2643 | (commit (string-append "v" version)))) | |
2644 | (file-name (git-file-name name version)) | |
2645 | (sha256 | |
babfdf75 | 2646 | (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5")))) |
db2bfcb9 EF |
2647 | (build-system julia-build-system) |
2648 | (propagated-inputs | |
2649 | `(("julia-dataapi" ,julia-dataapi))) | |
2650 | (home-page "https://github.com/JuliaData/Missings.jl") | |
2651 | (synopsis "Additional missing value support for Julia") | |
2652 | (description "This package provides additional functionality for working | |
2653 | with @code{missing} values in Julia.") | |
2654 | (license license:expat))) | |
2655 | ||
25bb6f08 EF |
2656 | (define-public julia-mlstyle |
2657 | (package | |
2658 | (name "julia-mlstyle") | |
2659 | (version "0.4.10") | |
2660 | (source | |
2661 | (origin | |
2662 | (method git-fetch) | |
2663 | (uri (git-reference | |
2664 | (url "https://github.com/thautwarm/MLStyle.jl") | |
2665 | (commit (string-append "v" version)))) | |
2666 | (file-name (git-file-name name version)) | |
2667 | (sha256 | |
2668 | (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059")))) | |
2669 | (build-system julia-build-system) | |
2670 | (native-inputs | |
2671 | `(("julia-datastructures" ,julia-datastructures))) | |
2672 | (home-page "https://thautwarm.github.io/MLStyle.jl/latest/") | |
2673 | (synopsis "Julia functional programming infrastructures") | |
2674 | (description "This package provides consistent and extensible functional | |
2675 | programming infrastructures, and metaprogramming facilities.") | |
2676 | (license license:expat))) | |
2677 | ||
f273a4b7 EF |
2678 | (define-public julia-mocking |
2679 | (package | |
2680 | (name "julia-mocking") | |
443ad586 | 2681 | (version "0.7.3") |
f273a4b7 EF |
2682 | (source |
2683 | (origin | |
2684 | (method git-fetch) | |
2685 | (uri (git-reference | |
2686 | (url "https://github.com/invenia/Mocking.jl") | |
2687 | (commit (string-append "v" version)))) | |
2688 | (file-name (git-file-name name version)) | |
2689 | (sha256 | |
443ad586 | 2690 | (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg")))) |
f273a4b7 EF |
2691 | (build-system julia-build-system) |
2692 | (propagated-inputs | |
443ad586 EF |
2693 | `(("julia-compat" ,julia-compat) |
2694 | ("julia-exprtools" ,julia-exprtools))) | |
f273a4b7 EF |
2695 | (home-page "https://github.com/invenia/Mocking.jl") |
2696 | (synopsis "Overload Julia function calls") | |
2697 | (description "The purpose of this package is to allow Julia function calls | |
2698 | to be temporarily overloaded for the purpose of testing.") | |
2699 | (license license:expat))) | |
2700 | ||
a5dc1742 EF |
2701 | (define-public julia-mosaicviews |
2702 | (package | |
2703 | (name "julia-mosaicviews") | |
2704 | (version "0.3.3") | |
2705 | (source | |
2706 | (origin | |
2707 | (method git-fetch) | |
2708 | (uri (git-reference | |
2709 | (url "https://github.com/JuliaArrays/MosaicViews.jl") | |
2710 | (commit (string-append "v" version)))) | |
2711 | (file-name (git-file-name name version)) | |
2712 | (sha256 | |
2713 | (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz")))) | |
2714 | (build-system julia-build-system) | |
2715 | (arguments | |
2716 | `(#:tests? #f)) ; Cycle with ImageCore.jl | |
2717 | (propagated-inputs | |
2718 | `(("julia-mappedarrays" ,julia-mappedarrays) | |
2719 | ("julia-paddedviews" ,julia-paddedviews) | |
2720 | ("julia-stackviews" ,julia-stackviews))) | |
2721 | ;(native-inputs | |
2722 | ; `(("julia-colorvectorspace" ,julia-colorvectorspace) | |
2723 | ; ("julia-imagecore" ,julia-imagecore))) | |
2724 | (home-page "https://github.com/JuliaArrays/MosaicViews.jl") | |
2725 | (synopsis | |
2726 | "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices") | |
2727 | (description "When visualizing images, it is not uncommon to provide a 2D | |
2728 | view of different image sources. For example, comparing multiple images of | |
2729 | different sizes, getting a preview of machine learning dataset. This package | |
2730 | aims to provide easy-to-use tools for such tasks.") | |
2731 | (license license:expat))) | |
2732 | ||
860ca285 EF |
2733 | (define-public julia-msgpack |
2734 | (package | |
2735 | (name "julia-msgpack") | |
2736 | (version "1.1.0") | |
2737 | (source | |
2738 | (origin | |
2739 | (method git-fetch) | |
2740 | (uri (git-reference | |
2741 | (url "https://github.com/JuliaIO/MsgPack.jl") | |
2742 | (commit (string-append "v" version)))) | |
2743 | (file-name (git-file-name name version)) | |
2744 | (sha256 | |
2745 | (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg")))) | |
2746 | (build-system julia-build-system) | |
2747 | (home-page "https://github.com/JuliaIO/MsgPack.jl") | |
2748 | (synopsis "Julia MsgPack implementation") | |
2749 | (description "@code{MsgPack.jl} is a MessagePack implementation in pure | |
2750 | Julia, with type-driven, overloadable packing/unpacking functionality.") | |
2751 | (license license:expat))) | |
2752 | ||
8f7d9ce2 EF |
2753 | (define-public julia-mutablearithmetics |
2754 | (package | |
2755 | (name "julia-mutablearithmetics") | |
f70db259 | 2756 | (version "0.2.20") |
8f7d9ce2 EF |
2757 | (source |
2758 | (origin | |
2759 | (method git-fetch) | |
2760 | (uri (git-reference | |
2761 | (url "https://github.com/jump-dev/MutableArithmetics.jl") | |
2762 | (commit (string-append "v" version)))) | |
2763 | (file-name (git-file-name name version)) | |
2764 | (sha256 | |
f70db259 | 2765 | (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f")))) |
8f7d9ce2 EF |
2766 | (build-system julia-build-system) |
2767 | (propagated-inputs | |
2768 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2769 | (home-page "https://github.com/jump-dev/MutableArithmetics.jl") | |
2770 | (synopsis "Interface for arithmetics on mutable types in Julia") | |
2771 | (description "MutableArithmetics is a Julia package which allows: | |
2772 | @itemize | |
2773 | @item mutable types to implement mutable arithmetics | |
2774 | @item algorithms that could exploit mutable arithmetics to exploit them while | |
2775 | still being completely generic | |
2776 | @end itemize") | |
2777 | (license license:mpl2.0))) | |
2778 | ||
a5edd83d | 2779 | (define-public julia-nanmath |
2780 | (package | |
2781 | (name "julia-nanmath") | |
2782 | (version "0.3.5") | |
2783 | (source | |
2784 | (origin | |
2785 | (method git-fetch) | |
2786 | (uri (git-reference | |
2787 | (url "https://github.com/mlubin/NaNMath.jl") | |
2788 | (commit (string-append "v" version)))) | |
2789 | (file-name (git-file-name name version)) | |
2790 | (sha256 | |
2791 | (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q")))) | |
2792 | (build-system julia-build-system) | |
2793 | (home-page "https://github.com/mlubin/NaNMath.jl") | |
2794 | (synopsis "Implementations of basic math functions") | |
2795 | (description "Implementations of basic math functions which return | |
2796 | @code{NaN} instead of throwing a @code{DomainError}.") | |
2797 | (license license:expat))) | |
2798 | ||
f52f7a30 EF |
2799 | (define-public julia-nlsolversbase |
2800 | (package | |
2801 | (name "julia-nlsolversbase") | |
2802 | (version "7.8.0") | |
2803 | (source | |
2804 | (origin | |
2805 | (method git-fetch) | |
2806 | (uri (git-reference | |
2807 | (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl") | |
2808 | (commit (string-append "v" version)))) | |
2809 | (file-name (git-file-name name version)) | |
2810 | (sha256 | |
2811 | (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98")))) | |
2812 | (build-system julia-build-system) | |
2813 | (propagated-inputs | |
2814 | `(("julia-diffresults" ,julia-diffresults) | |
2815 | ("julia-finitediff" ,julia-finitediff) | |
2816 | ("julia-forwarddiff" ,julia-forwarddiff))) | |
2817 | (native-inputs | |
2818 | `(("julia-optimtestproblems" ,julia-optimtestproblems) | |
2819 | ("julia-recursivearraytools" ,julia-recursivearraytools))) | |
2820 | (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl") | |
2821 | (synopsis "Optimization and equation solver software in JuliaNLSolvers") | |
2822 | (description "This package aims at establishing common ground for Optim.jl, | |
2823 | LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to | |
2824 | hold objective related callables, information about the objectives, and an | |
2825 | interface to interact with these types.") | |
2826 | (license license:expat))) | |
2827 | ||
5be9b3fd EF |
2828 | (define-public julia-nnlib |
2829 | (package | |
2830 | (name "julia-nnlib") | |
28f0a15b | 2831 | (version "0.7.29") |
5be9b3fd EF |
2832 | (source |
2833 | (origin | |
2834 | (method git-fetch) | |
2835 | (uri (git-reference | |
2836 | (url "https://github.com/FluxML/NNlib.jl") | |
2837 | (commit (string-append "v" version)))) | |
2838 | (file-name (git-file-name name version)) | |
2839 | (sha256 | |
28f0a15b | 2840 | (base32 "16vn5w5274kcywh1xp0zqjk5q10xrk125aznz5av6wifwrvghk8s")))) |
5be9b3fd EF |
2841 | (build-system julia-build-system) |
2842 | (arguments | |
d92bd679 | 2843 | `(#:phases |
5be9b3fd | 2844 | (modify-phases %standard-phases |
d92bd679 | 2845 | (add-after 'unpack 'skip-cuda-tests |
5be9b3fd EF |
2846 | (lambda _ |
2847 | (substitute* "test/runtests.jl" | |
d92bd679 EF |
2848 | (("using CUDA") "") |
2849 | (("&& CUDA\\.functional\\(\\)") "")) | |
5be9b3fd EF |
2850 | (setenv "NNLIB_TEST_CUDA" "false")))))) |
2851 | (propagated-inputs | |
2852 | `(("julia-adapt" ,julia-adapt) | |
2853 | ("julia-chainrulescore" ,julia-chainrulescore) | |
2854 | ("julia-requires" ,julia-requires))) | |
2855 | (native-inputs | |
2856 | `(("julia-chainrulestestutils" ,julia-chainrulestestutils) | |
2857 | ("julia-stablerngs" ,julia-stablerngs) | |
2858 | ("julia-zygote" ,julia-zygote))) | |
2859 | (home-page "https://github.com/FluxML/NNlib.jl") | |
2860 | (synopsis "Neural Network primitives with multiple backends") | |
2861 | (description "This package will provide a library of functions useful for | |
2862 | machine learning, such as softmax, sigmoid, convolutions and pooling. It | |
2863 | doesn't provide any other \"high-level\" functionality like layers or AD.") | |
2864 | (license license:expat))) | |
2865 | ||
2615a8ba EF |
2866 | (define-public julia-optimtestproblems |
2867 | (package | |
2868 | (name "julia-optimtestproblems") | |
2869 | (version "2.0.2") | |
2870 | (source | |
2871 | (origin | |
2872 | (method git-fetch) | |
2873 | (uri (git-reference | |
2874 | (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl") | |
2875 | (commit (string-append "v" version)))) | |
2876 | (file-name (git-file-name name version)) | |
2877 | (sha256 | |
2878 | (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9")))) | |
2879 | (build-system julia-build-system) | |
2880 | (arguments | |
2881 | `(#:julia-package-name "OptimTestProblems")) | |
2882 | (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl") | |
2883 | (synopsis "Collection of optimization test problems") | |
2884 | (description "The purpose of this package is to provide test problems for | |
2885 | JuliaNLSolvers packages.") | |
2886 | (license license:expat))) | |
2887 | ||
eccd448c | 2888 | (define-public julia-orderedcollections |
2889 | (package | |
2890 | (name "julia-orderedcollections") | |
8812aead | 2891 | (version "1.4.1") |
eccd448c | 2892 | (source |
2893 | (origin | |
2894 | (method git-fetch) | |
2895 | (uri (git-reference | |
2896 | (url "https://github.com/JuliaCollections/OrderedCollections.jl") | |
2897 | (commit (string-append "v" version)))) | |
2898 | (file-name (git-file-name name version)) | |
2899 | (sha256 | |
8812aead | 2900 | (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf")))) |
eccd448c | 2901 | (build-system julia-build-system) |
2902 | (home-page "https://github.com/JuliaCollections/OrderedCollections.jl") | |
2903 | (synopsis "Associative containers that preserve insertion order") | |
2904 | (description "This package implements @code{OrderedDicts} and | |
2905 | @code{OrderedSets}, which are similar to containers in base Julia. However, | |
2906 | during iteration the @code{Ordered*} containers return items in the order in | |
2907 | which they were added to the collection.") | |
2908 | (license license:expat))) | |
c0c21d77 | 2909 | |
fb634a0e | 2910 | (define-public julia-offsetarrays |
2911 | (package | |
2912 | (name "julia-offsetarrays") | |
c2305209 | 2913 | (version "1.10.3") |
fb634a0e | 2914 | (source |
2915 | (origin | |
2916 | (method git-fetch) | |
2917 | (uri (git-reference | |
2918 | (url "https://github.com/JuliaArrays/OffsetArrays.jl") | |
2919 | (commit (string-append "v" version)))) | |
2920 | (file-name (git-file-name name version)) | |
2921 | (sha256 | |
c2305209 | 2922 | (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc")))) |
fb634a0e | 2923 | (build-system julia-build-system) |
2924 | (propagated-inputs | |
2925 | `(("julia-adapt" ,julia-adapt))) | |
2926 | ;; CatIndices depends on OffsetArrays, introducing a recursive dependency | |
2927 | (arguments '(#:tests? #f)) | |
2928 | (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/") | |
2929 | (synopsis "Fortran-like arrays with arbitrary, zero or negative indices") | |
2930 | (description "@code{OffsetArrays.jl} provides Julia users with arrays that | |
2931 | have arbitrary indices, similar to those found in some other programming | |
2932 | languages like Fortran.") | |
2933 | (license license:expat))) | |
2934 | ||
99492890 EF |
2935 | (define-public julia-paddedviews |
2936 | (package | |
2937 | (name "julia-paddedviews") | |
2938 | (version "0.5.8") | |
2939 | (source | |
2940 | (origin | |
2941 | (method git-fetch) | |
2942 | (uri (git-reference | |
2943 | (url "https://github.com/JuliaArrays/PaddedViews.jl") | |
2944 | (commit (string-append "v" version)))) | |
2945 | (file-name (git-file-name name version)) | |
2946 | (sha256 | |
2947 | (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h")))) | |
2948 | (build-system julia-build-system) | |
2949 | (arguments | |
2950 | '(#:tests? #f)) ;require Documenter, not packaged yet | |
2951 | (propagated-inputs | |
2952 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2953 | (home-page "https://github.com/JuliaArrays/PaddedViews.jl") | |
2954 | (synopsis "Add virtual padding to the edges of an array") | |
2955 | (description "@code{PaddedViews} provides a simple wrapper type, | |
2956 | @code{PaddedView}, to add \"virtual\" padding to any array without copying data. | |
2957 | Edge values not specified by the array are assigned a @code{fillvalue}. | |
2958 | Multiple arrays may be \"promoted\" to have common indices using the | |
2959 | @code{paddedviews} function.") | |
2960 | (license license:expat))) | |
2961 | ||
dd331f49 EF |
2962 | (define-public julia-parameters |
2963 | (package | |
2964 | (name "julia-parameters") | |
2965 | (version "0.12.2") | |
2966 | (source | |
2967 | (origin | |
2968 | (method git-fetch) | |
2969 | (uri (git-reference | |
2970 | (url "https://github.com/mauro3/Parameters.jl") | |
2971 | (commit (string-append "v" version)))) | |
2972 | (file-name (git-file-name name version)) | |
2973 | (sha256 | |
2974 | (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2")))) | |
2975 | (build-system julia-build-system) | |
2976 | (propagated-inputs | |
2977 | `(("julia-orderedcollections" ,julia-orderedcollections) | |
2978 | ("julia-unpack" ,julia-unpack))) | |
2979 | (home-page "https://github.com/mauro3/Parameters.jl") | |
2980 | (synopsis "Numerical-model parameter helpers") | |
2981 | (description "This package contains types with default field values, keyword | |
2982 | constructors and (un-)pack macros. Keyword functions can be slow in Julia, | |
2983 | however, the normal positional constructor is also provided and could be used in | |
2984 | performance critical code.") | |
2985 | (license license:expat))) | |
2986 | ||
c0c21d77 | 2987 | (define-public julia-parsers |
2988 | (package | |
2989 | (name "julia-parsers") | |
165a85a6 | 2990 | (version "1.1.0") |
c0c21d77 | 2991 | (source |
2992 | (origin | |
2993 | (method git-fetch) | |
2994 | (uri (git-reference | |
2995 | (url "https://github.com/JuliaData/Parsers.jl") | |
2996 | (commit (string-append "v" version)))) | |
2997 | (file-name (git-file-name name version)) | |
2998 | (sha256 | |
165a85a6 | 2999 | (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk")))) |
c0c21d77 | 3000 | (build-system julia-build-system) |
3001 | (home-page "https://github.com/JuliaData/Parsers.jl") | |
3002 | (synopsis "Fast parsing machinery for basic types in Julia") | |
3003 | (description "@code{Parsers.jl} is a collection of type parsers and | |
3004 | utilities for Julia.") | |
3005 | (license license:expat))) | |
8f59a9fb | 3006 | |
9e30f659 EF |
3007 | (define-public julia-pdmats |
3008 | (package | |
3009 | (name "julia-pdmats") | |
a424ebde | 3010 | (version "0.11.1") |
9e30f659 EF |
3011 | (source |
3012 | (origin | |
3013 | (method git-fetch) | |
3014 | (uri (git-reference | |
3015 | (url "https://github.com/JuliaStats/PDMats.jl") | |
3016 | (commit (string-append "v" version)))) | |
3017 | (file-name (git-file-name name version)) | |
3018 | (sha256 | |
a424ebde | 3019 | (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0")))) |
9e30f659 EF |
3020 | (build-system julia-build-system) |
3021 | (home-page "https://github.com/JuliaStats/PDMats.jl") | |
3022 | (synopsis | |
3023 | "Uniform Interface for positive definite matrices of various structures") | |
3024 | (description "PDMats.jl supports efficient computation on positive definite | |
3025 | matrices of various structures. In particular, it provides uniform interfaces | |
3026 | to use positive definite matrices of various structures for writing generic | |
3027 | algorithms, while ensuring that the most efficient implementation is used in | |
3028 | actual computation.") | |
3029 | (license license:expat))) | |
f11621f1 | 3030 | |
ab942d5c EF |
3031 | (define-public julia-plotthemes |
3032 | (package | |
3033 | (name "julia-plotthemes") | |
3034 | (version "2.0.1") | |
3035 | (source | |
3036 | (origin | |
3037 | (method git-fetch) | |
3038 | (uri (git-reference | |
3039 | (url "https://github.com/JuliaPlots/PlotThemes.jl") | |
3040 | (commit (string-append "v" version)))) | |
3041 | (file-name (git-file-name name version)) | |
3042 | (sha256 | |
3043 | (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh")))) | |
3044 | (build-system julia-build-system) | |
3045 | (propagated-inputs | |
3046 | `(("julia-plotutils" ,julia-plotutils) | |
3047 | ("julia-requires" ,julia-requires))) | |
3048 | (home-page "https://github.com/JuliaPlots/PlotThemes.jl") | |
3049 | (synopsis "Themes for the Julia plotting package Plots.jl") | |
3050 | (description | |
3051 | "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.") | |
3052 | (license license:expat))) | |
3053 | ||
f11621f1 EF |
3054 | (define-public julia-plotutils |
3055 | (package | |
3056 | (name "julia-plotutils") | |
235456d6 | 3057 | (version "1.0.15") |
f11621f1 EF |
3058 | (source |
3059 | (origin | |
3060 | (method git-fetch) | |
3061 | (uri (git-reference | |
3062 | (url "https://github.com/JuliaPlots/PlotUtils.jl") | |
3063 | (commit (string-append "v" version)))) | |
3064 | (file-name (git-file-name name version)) | |
3065 | (sha256 | |
235456d6 | 3066 | (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105")))) |
f11621f1 EF |
3067 | (build-system julia-build-system) |
3068 | (propagated-inputs | |
3069 | `(("julia-colors" ,julia-colors) | |
3070 | ("julia-colorschemes" ,julia-colorschemes) | |
3071 | ("julia-reexport" ,julia-reexport))) | |
3072 | (native-inputs | |
3073 | `(("julia-stablerngs" ,julia-stablerngs))) | |
3074 | (home-page "https://github.com/JuliaPlots/PlotUtils.jl") | |
3075 | (synopsis "Helper algorithms for building plotting components") | |
d342d066 | 3076 | (description "This package contains generic helper algorithms for building |
f11621f1 EF |
3077 | plotting components.") |
3078 | (license license:expat))) | |
28afc9ba | 3079 | |
9f92c8b5 EF |
3080 | (define-public julia-pooledarrays |
3081 | (package | |
3082 | (name "julia-pooledarrays") | |
ddec4985 | 3083 | (version "1.3.0") |
9f92c8b5 EF |
3084 | (source |
3085 | (origin | |
3086 | (method git-fetch) | |
3087 | (uri (git-reference | |
3088 | (url "https://github.com/JuliaData/PooledArrays.jl") | |
3089 | (commit (string-append "v" version)))) | |
3090 | (file-name (git-file-name name version)) | |
3091 | (sha256 | |
ddec4985 | 3092 | (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr")))) |
9f92c8b5 EF |
3093 | (build-system julia-build-system) |
3094 | (propagated-inputs | |
3095 | `(("julia-dataapi" ,julia-dataapi))) | |
3096 | (home-page "https://github.com/JuliaData/PooledArrays.jl") | |
3097 | (synopsis "Pooled representation of arrays in Julia") | |
3098 | (description "This package provides a pooled representation of arrays for | |
3099 | purposes of compression when there are few unique elements.") | |
3100 | (license license:expat))) | |
3101 | ||
ed6c0f85 EF |
3102 | (define-public julia-positivefactorizations |
3103 | (package | |
3104 | (name "julia-positivefactorizations") | |
3105 | (version "0.2.4") | |
3106 | (source | |
3107 | (origin | |
3108 | (method git-fetch) | |
3109 | (uri (git-reference | |
3110 | (url "https://github.com/timholy/PositiveFactorizations.jl") | |
3111 | (commit (string-append "v" version)))) | |
3112 | (file-name (git-file-name name version)) | |
3113 | (sha256 | |
3114 | (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23")))) | |
3115 | (build-system julia-build-system) | |
3116 | (native-inputs | |
3117 | `(("julia-forwarddiff" ,julia-forwarddiff) | |
3118 | ("julia-reversediff" ,julia-reversediff))) | |
3119 | (home-page "https://github.com/timholy/PositiveFactorizations.jl") | |
3120 | (synopsis "Positive-definite \"approximations\" to matrices") | |
3121 | (description "@code{PositiveFactorizations} is a package for computing a | |
3122 | positive definite matrix decomposition (factorization) from an arbitrary | |
3123 | symmetric input. The motivating application is optimization (Newton or | |
3124 | quasi-Newton methods), in which the canonical search direction -H/g (H being the | |
3125 | Hessian and g the gradient) may not be a descent direction if H is not positive | |
3126 | definite.") | |
3127 | (license license:expat))) | |
3128 | ||
f7eaa69d EF |
3129 | (define-public julia-preferences |
3130 | (package | |
3131 | (name "julia-preferences") | |
3132 | (version "1.2.2") | |
3133 | (source | |
3134 | (origin | |
3135 | (method git-fetch) | |
3136 | (uri (git-reference | |
3137 | (url "https://github.com/JuliaPackaging/Preferences.jl") | |
3138 | (commit (string-append "v" version)))) | |
3139 | (file-name (git-file-name name version)) | |
3140 | (sha256 | |
3141 | (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq")))) | |
3142 | (build-system julia-build-system) | |
3143 | (arguments | |
3144 | `(#:tests? #f)) ; Tests try to mkdir /.julia | |
3145 | (home-page "https://github.com/JuliaPackaging/Preferences.jl") | |
3146 | (synopsis "Store configuration switches to TOML files") | |
3147 | (description "The @code{Preferences} package provides an integrated way for | |
3148 | packages to store configuration switches to persistent TOML files, and use those | |
3149 | pieces of information at both run time and compile time in Julia. This enables | |
3150 | the user to modify the behavior of a package, and have that choice reflected in | |
3151 | everything from run time algorithm choice to code generation at compile time.") | |
3152 | (license license:expat))) | |
3153 | ||
d2d1f8bf EF |
3154 | (define-public julia-prettytables |
3155 | (package | |
3156 | (name "julia-prettytables") | |
3157 | (version "1.0.1") | |
3158 | (source | |
3159 | (origin | |
3160 | (method git-fetch) | |
3161 | (uri (git-reference | |
3162 | (url "https://github.com/ronisbr/PrettyTables.jl") | |
3163 | (commit (string-append "v" version)))) | |
3164 | (file-name (git-file-name name version)) | |
3165 | (sha256 | |
3166 | (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw")))) | |
3167 | (build-system julia-build-system) | |
3168 | (arguments | |
3169 | `(#:phases | |
3170 | (modify-phases %standard-phases | |
3171 | (add-after 'unpack 'skip-color-tests | |
3172 | (lambda _ | |
3173 | (substitute* "test/text_backend.jl" | |
3174 | ((".*colors\\.jl.*") "")) | |
3175 | #t))))) | |
3176 | (propagated-inputs | |
3177 | `(("julia-crayons" ,julia-crayons) | |
3178 | ("julia-formatting" ,julia-formatting) | |
3179 | ("julia-reexport" ,julia-reexport) | |
3180 | ("julia-tables" ,julia-tables))) | |
3181 | (home-page "https://github.com/ronisbr/PrettyTables.jl") | |
3182 | (synopsis "Print data in formatted tables") | |
3183 | (description "This package has the purpose to print data in matrices in a | |
3184 | human-readable format.") | |
3185 | (license license:expat))) | |
8733d2c2 | 3186 | |
3893f136 EF |
3187 | (define-public julia-pycall |
3188 | (package | |
3189 | (name "julia-pycall") | |
3190 | (version "1.92.3") | |
3191 | (source | |
3192 | (origin | |
3193 | (method git-fetch) | |
3194 | (uri (git-reference | |
3195 | (url "https://github.com/JuliaPy/PyCall.jl") | |
3196 | (commit (string-append "v" version)))) | |
3197 | (file-name (git-file-name name version)) | |
3198 | (sha256 | |
3199 | (base32 | |
3200 | "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq")))) | |
3201 | (build-system julia-build-system) | |
3202 | (arguments | |
3203 | `(#:imported-modules ((guix build python-build-system) | |
3204 | ,@%julia-build-system-modules) | |
3205 | #:modules ((guix build julia-build-system) | |
3206 | (guix build utils) | |
3207 | ((guix build python-build-system) #:prefix python:)) | |
3208 | #:phases | |
3209 | (modify-phases %standard-phases | |
3210 | (add-after 'unpack 'remove-conda | |
3211 | (lambda _ | |
3212 | (substitute* "Project.toml" | |
3213 | ((".*Conda.*") "")) | |
3214 | (substitute* (list "src/PyCall.jl" | |
3215 | "test/runtests.jl") | |
3216 | (("import Conda") "")) | |
3217 | (substitute* "deps/depsutils.jl" | |
3218 | (("Conda.PYTHONDIR") "\"/\"")) | |
3219 | #t)) | |
3220 | (add-after 'unpack 'set-python | |
3221 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
3222 | (let ((python (assoc-ref inputs "python"))) | |
3223 | (setenv "PYCALL_JL_RUNTIME_PYTHON" | |
3224 | (string-append python "/bin/python3")) | |
3225 | (with-output-to-file "deps/deps.jl" | |
3226 | (lambda _ | |
3227 | (format #t | |
3228 | "const python = \"~a/bin/python3\"~@ | |
3229 | const pyprogramname = \"~a/bin/python3\"~@ | |
3230 | const libpython = \"~a/lib/libpython~a.so.1.0\"~@ | |
3231 | const PYTHONHOME = \"~a\"~@ | |
3232 | const pyversion_build = v\"~a\"~@ | |
3233 | const conda = false~%" | |
3234 | python | |
3235 | python | |
3236 | python | |
3237 | (python:python-version python) | |
3238 | python | |
3239 | ,(package-version python)))) | |
3240 | #t))) | |
3241 | (add-before 'check 'pre-check | |
3242 | (lambda _ | |
3243 | (setenv "CI" "true") | |
3244 | (setenv "JULIA_PKGEVAL" "true") | |
3245 | #t))))) | |
3246 | (propagated-inputs | |
3247 | `(("julia-macrotools" ,julia-macrotools) | |
3248 | ("julia-versionparsing" ,julia-versionparsing))) | |
3249 | (inputs | |
3250 | `(("python" ,python))) | |
3251 | (native-inputs | |
3252 | `(("python-numpy" ,python-numpy))) | |
3253 | (home-page "https://github.com/JuliaPy/PyCall.jl") | |
3254 | (synopsis "Call Python functions from the Julia language") | |
3255 | (description "This package provides the ability to directly call and fully | |
3256 | interoperate with Python from the Julia language. You can import arbitrary | |
3257 | Python modules from Julia, call Python functions (with automatic conversion of | |
3258 | types between Julia and Python), define Python classes from Julia methods, and | |
3259 | share large data structures between Julia and Python without copying them.") | |
3260 | (license license:expat))) | |
3261 | ||
8733d2c2 EF |
3262 | (define-public julia-quadgk |
3263 | (package | |
3264 | (name "julia-quadgk") | |
3265 | (version "2.4.1") | |
3266 | (source | |
3267 | (origin | |
3268 | (method git-fetch) | |
3269 | (uri (git-reference | |
3270 | (url "https://github.com/JuliaMath/QuadGK.jl") | |
3271 | (commit (string-append "v" version)))) | |
3272 | (file-name (git-file-name name version)) | |
3273 | (sha256 | |
3274 | (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33")))) | |
3275 | (build-system julia-build-system) | |
3276 | (propagated-inputs | |
3277 | `(("julia-datastructures" ,julia-datastructures))) | |
3278 | (home-page "https://github.com/JuliaMath/QuadGK.jl") | |
3279 | (synopsis "Adaptive 1d numerical Gauss–Kronrod integration") | |
3280 | (description "This package provides support for one-dimensional numerical | |
3281 | integration in Julia using adaptive Gauss-Kronrod quadrature. The code was | |
3282 | originally part of Base Julia. It supports integration of arbitrary numeric | |
3283 | types, including arbitrary precision (@code{BigFloat}), and even integration of | |
3284 | arbitrary normed vector spaces (e.g. matrix-valued integrands).") | |
3285 | (license license:expat))) | |
d2d1f8bf | 3286 | |
277fef20 EF |
3287 | (define-public julia-quadmath |
3288 | (package | |
3289 | (name "julia-quadmath") | |
3290 | (version "0.5.5") | |
3291 | (source | |
3292 | (origin | |
3293 | (method git-fetch) | |
3294 | (uri (git-reference | |
3295 | (url "https://github.com/JuliaMath/Quadmath.jl") | |
3296 | (commit (string-append "v" version)))) | |
3297 | (file-name (git-file-name name version)) | |
3298 | (sha256 | |
3299 | (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w")))) | |
3300 | (build-system julia-build-system) | |
3301 | (arguments | |
3302 | `(#:phases | |
3303 | (modify-phases %standard-phases | |
3304 | (add-after 'unpack 'hardcode-libmath-location | |
3305 | (lambda* (#:key inputs #:allow-other-keys) | |
3306 | (let ((gcclib (assoc-ref inputs "gcc:lib"))) | |
3307 | (substitute* "src/Quadmath.jl" | |
3308 | (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib)) | |
3309 | (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib))) | |
3310 | #t)))))) | |
3311 | (propagated-inputs | |
3312 | `(("julia-requires" ,julia-requires))) | |
3313 | (inputs | |
3314 | `(("gcc:lib" ,gcc "lib"))) | |
3315 | (native-inputs | |
3316 | `(("julia-specialfunctions" ,julia-specialfunctions))) | |
3317 | (home-page "https://github.com/JuliaMath/Quadmath.jl") | |
3318 | (synopsis "Float128 and libquadmath for the Julia language") | |
3319 | (description "This is a Julia interface to @code{libquadmath}, providing a | |
3320 | @code{Float128} type corresponding to the IEEE754 binary128 floating point | |
3321 | format.") | |
3322 | (license license:expat))) | |
3323 | ||
12289754 EF |
3324 | (define-public julia-quaternions |
3325 | (package | |
3326 | (name "julia-quaternions") | |
3327 | (version "0.4.2") | |
3328 | (source | |
3329 | (origin | |
3330 | (method git-fetch) | |
3331 | (uri (git-reference | |
3332 | (url "https://github.com/JuliaGeometry/Quaternions.jl") | |
3333 | (commit (string-append "v" version)))) | |
3334 | (file-name (git-file-name name version)) | |
3335 | (sha256 | |
3336 | (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s")))) | |
3337 | (build-system julia-build-system) | |
3338 | (propagated-inputs | |
3339 | `(("julia-dualnumbers" ,julia-dualnumbers))) | |
3340 | (home-page "https://github.com/JuliaGeometry/Quaternions.jl") | |
3341 | (synopsis "Quaternion and dual-quaternion functionality") | |
3342 | (description "Quaternions are best known for their suitability as | |
3343 | representations of 3D rotational orientation. They can also be viewed as an | |
3344 | extension of complex numbers.") | |
3345 | (license license:expat))) | |
3346 | ||
209a80c1 EF |
3347 | (define-public julia-queryoperators |
3348 | (package | |
3349 | (name "julia-queryoperators") | |
3350 | (version "0.9.3") | |
3351 | (source | |
3352 | (origin | |
3353 | (method git-fetch) | |
3354 | (uri (git-reference | |
3355 | (url "https://github.com/queryverse/QueryOperators.jl") | |
3356 | (commit (string-append "v" version)))) | |
3357 | (file-name (git-file-name name version)) | |
3358 | (sha256 | |
3359 | (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22")))) | |
3360 | (build-system julia-build-system) | |
3361 | (propagated-inputs | |
3362 | `(("julia-datastructures" ,julia-datastructures) | |
3363 | ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) | |
3364 | ("julia-tableshowutils" ,julia-tableshowutils))) | |
3365 | (home-page "https://github.com/queryverse/QueryOperators.jl") | |
3366 | (synopsis "Query operators for Julia") | |
3367 | (description "This package contains the underlying query operators that are | |
3368 | exposed to users in @code{Query.jl}.") | |
3369 | (license license:expat))) | |
3370 | ||
a3369594 EF |
3371 | (define-public julia-rangearrays |
3372 | (package | |
3373 | (name "julia-rangearrays") | |
3374 | (version "0.3.2") | |
3375 | (source | |
3376 | (origin | |
3377 | (method git-fetch) | |
3378 | (uri (git-reference | |
3379 | (url "https://github.com/JuliaArrays/RangeArrays.jl") | |
3380 | (commit (string-append "v" version)))) | |
3381 | (file-name (git-file-name name version)) | |
3382 | (sha256 | |
3383 | (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg")))) | |
3384 | (build-system julia-build-system) | |
3385 | (home-page "https://github.com/JuliaArrays/RangeArrays.jl") | |
3386 | (synopsis "Array data structures with autogenerated columns") | |
3387 | (description "The goal of RangeArrays is to provide efficient and convenient | |
3388 | array data structures where the columns of the arrays are generated (on the fly) | |
3389 | by Ranges.") | |
3390 | (license license:expat))) | |
3391 | ||
b2ca58be EF |
3392 | (define-public julia-ratios |
3393 | (package | |
3394 | (name "julia-ratios") | |
3395 | (version "0.4.0") | |
3396 | (source | |
3397 | (origin | |
3398 | (method git-fetch) | |
3399 | (uri (git-reference | |
3400 | (url "https://github.com/timholy/Ratios.jl") | |
3401 | (commit (string-append "v" version)))) | |
3402 | (file-name (git-file-name name version)) | |
3403 | (sha256 | |
3404 | (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh")))) | |
3405 | (build-system julia-build-system) | |
3406 | (home-page "https://github.com/timholy/Ratios.jl") | |
3407 | (synopsis "Faster Rational-like types for Julia") | |
3408 | (description "This package provides types similar to Julia's @code{Rational} | |
3409 | type, which make some sacrifices but have better computational performance.") | |
3410 | (license license:expat))) | |
3411 | ||
28afc9ba EF |
3412 | (define-public julia-recipesbase |
3413 | (package | |
3414 | (name "julia-recipesbase") | |
3415 | (version "1.1.1") | |
3416 | (source | |
3417 | (origin | |
3418 | (method git-fetch) | |
3419 | (uri (git-reference | |
3420 | (url "https://github.com/JuliaPlots/RecipesBase.jl") | |
3421 | (commit (string-append "v" version)))) | |
3422 | (file-name (git-file-name name version)) | |
3423 | (sha256 | |
3424 | (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5")))) | |
3425 | (build-system julia-build-system) | |
3426 | (home-page "https://github.com/JuliaPlots/RecipesBase.jl") | |
3427 | (synopsis "Define transformation recipes on user types") | |
3428 | (description "This package implements handy macros @code{@@recipe} and | |
3429 | @code{@@series} which will define a custom transformation and attach attributes | |
3430 | for user types. Its design is an attempt to simplify and generalize the summary | |
3431 | and display of types and data from external packages. With this package it is | |
3432 | possible to describe visualization routines that can be used as components in | |
3433 | more complex visualizations.") | |
3434 | (license license:expat))) | |
9e30f659 | 3435 | |
ab7d4e85 EF |
3436 | (define-public julia-recipespipeline |
3437 | (package | |
3438 | (name "julia-recipespipeline") | |
831ce9b9 | 3439 | (version "0.3.4") |
ab7d4e85 EF |
3440 | (source |
3441 | (origin | |
3442 | (method git-fetch) | |
3443 | (uri (git-reference | |
3444 | (url "https://github.com/JuliaPlots/RecipesPipeline.jl") | |
3445 | (commit (string-append "v" version)))) | |
3446 | (file-name (git-file-name name version)) | |
3447 | (sha256 | |
831ce9b9 | 3448 | (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7")))) |
ab7d4e85 EF |
3449 | (build-system julia-build-system) |
3450 | (arguments | |
3451 | `(#:tests? #f)) ; Cycle with Plots.jl. | |
3452 | (propagated-inputs | |
3453 | `(("julia-nanmath" ,julia-nanmath) | |
3454 | ("julia-plotutils" ,julia-plotutils) | |
3455 | ("julia-recipesbase" ,julia-recipesbase))) | |
3456 | (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/") | |
3457 | (synopsis "Utilities for processing recipes") | |
3458 | (description "This package was factored out of @code{Plots.jl} to allow any | |
3459 | other plotting package to use the recipe pipeline. In short, the extremely | |
3460 | lightweight @code{RecipesBase.jl} package can be depended on by any package to | |
3461 | define \"recipes\": plot specifications of user-defined types, as well as custom | |
3462 | plot types. @code{RecipePipeline.jl} contains the machinery to translate these | |
3463 | recipes to full specifications for a plot.") | |
3464 | (license license:expat))) | |
3465 | ||
01e9e008 EF |
3466 | (define-public julia-recursivearraytools |
3467 | (package | |
3468 | (name "julia-recursivearraytools") | |
f93a9835 | 3469 | (version "2.16.1") |
01e9e008 EF |
3470 | (source |
3471 | (origin | |
3472 | (method git-fetch) | |
3473 | (uri (git-reference | |
3474 | (url "https://github.com/SciML/RecursiveArrayTools.jl") | |
3475 | (commit (string-append "v" version)))) | |
3476 | (file-name (git-file-name name version)) | |
3477 | (sha256 | |
f93a9835 | 3478 | (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf")))) |
01e9e008 EF |
3479 | (build-system julia-build-system) |
3480 | (arguments | |
3481 | `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl. | |
3482 | (propagated-inputs | |
3483 | `(("julia-arrayinterface" ,julia-arrayinterface) | |
f93a9835 | 3484 | ("julia-chainrulescore" ,julia-chainrulescore) |
01e9e008 | 3485 | ("julia-docstringextensions" ,julia-docstringextensions) |
01e9e008 | 3486 | ("julia-recipesbase" ,julia-recipesbase) |
f93a9835 | 3487 | ("julia-requires" ,julia-requires) |
01e9e008 EF |
3488 | ("julia-staticarrays" ,julia-staticarrays) |
3489 | ("julia-zygoterules" ,julia-zygoterules))) | |
3490 | ;(native-inputs | |
3491 | ; `(("julia-forwarddiff" ,julia-forwarddiff) | |
3492 | ; ("julia-nlsolve" ,julia-nlsolve) | |
3493 | ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq) | |
3494 | ; ("julia-structarrays" ,julia-structarrays) | |
01e9e008 EF |
3495 | ; ("julia-zygote" ,julia-zygote))) |
3496 | (home-page "https://github.com/SciML/RecursiveArrayTools.jl") | |
3497 | (synopsis "Tools for handling objects like arrays of arrays and deeper nestings") | |
3498 | (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with | |
3499 | recursive arrays like arrays of arrays.") | |
3500 | (license license:expat))) | |
3501 | ||
02543b52 | 3502 | (define-public julia-reexport |
3503 | (package | |
3504 | (name "julia-reexport") | |
09ee0df8 | 3505 | (version "1.2.2") |
02543b52 | 3506 | (source |
3507 | (origin | |
3508 | (method git-fetch) | |
3509 | (uri (git-reference | |
3510 | (url "https://github.com/simonster/Reexport.jl") | |
d964f9d8 | 3511 | (commit (string-append "v" version)))) |
02543b52 | 3512 | (file-name (git-file-name name version)) |
3513 | (sha256 | |
09ee0df8 | 3514 | (base32 "0inf5q6f01ncd5c5wm8mwzv2hs627ng6xlh8dhrlflp321hbamwf")))) |
02543b52 | 3515 | (build-system julia-build-system) |
3516 | (home-page "https://github.com/simonster/Reexport.jl") | |
3517 | (synopsis "Re-export modules and symbols") | |
3518 | (description "This package provides tools to re-export modules and symbols.") | |
3519 | (license license:expat))) | |
56753c0f EF |
3520 | |
3521 | (define-public julia-referencetests | |
3522 | (package | |
3523 | (name "julia-referencetests") | |
3524 | (version "0.9.7") | |
3525 | (source | |
3526 | (origin | |
3527 | (method git-fetch) | |
3528 | (uri (git-reference | |
3529 | (url "https://github.com/JuliaTesting/ReferenceTests.jl") | |
3530 | (commit (string-append "v" version)))) | |
3531 | (file-name (git-file-name name version)) | |
3532 | (sha256 | |
3533 | (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9")))) | |
3534 | (build-system julia-build-system) | |
3535 | (arguments | |
3536 | `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl. | |
3537 | (propagated-inputs | |
3538 | `(("julia-deepdiffs" ,julia-deepdiffs) | |
3539 | ("julia-distances" ,julia-distances) | |
3540 | ("julia-fileio" ,julia-fileio) | |
3541 | ("julia-imagecore" ,julia-imagecore) | |
3542 | ("julia-imageinterminal" ,julia-imageinterminal))) | |
3543 | ;(native-inputs | |
3544 | ; `(("julia-csvfiles" ,julia-csvfiles) | |
3545 | ; ("julia-dataframes" ,julia-dataframes) | |
3546 | ; ("julia-gr" ,julia-gr) | |
3547 | ; ("julia-imagemagick" ,julia-imagemagick) | |
3548 | ; ("julia-imagetransformations" ,julia-imagetransformations) | |
3549 | ; ("julia-plots" ,julia-plots) | |
3550 | ; ("julia-testimages" ,julia-testimages))) | |
3551 | (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/") | |
3552 | (synopsis "Utility package for comparing data against reference files") | |
3553 | (description "@code{ReferenceTests.jl} is a Julia package that adds a couple | |
3554 | of additional macros to your testing toolbox. In particular, it focuses on | |
3555 | functionality for testing values against reference files, which in turn the | |
3556 | package can help create and update if need be.") | |
3557 | (license license:expat))) | |
02543b52 | 3558 | |
658fca53 | 3559 | (define-public julia-requires |
3560 | (package | |
3561 | (name "julia-requires") | |
3562 | (version "1.1.3") | |
3563 | (source | |
3564 | (origin | |
3565 | (method git-fetch) | |
3566 | (uri (git-reference | |
3567 | (url "https://github.com/JuliaPackaging/Requires.jl/") | |
3568 | (commit (string-append "v" version)))) | |
3569 | (file-name (git-file-name name version)) | |
3570 | (sha256 | |
3571 | (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01")))) | |
3572 | (build-system julia-build-system) | |
3573 | (inputs ;required for test | |
3574 | `(("julia-example" ,julia-example))) | |
3575 | (propagated-inputs | |
3576 | `(("julia-colors" ,julia-colors))) | |
3577 | (home-page "https://github.com/JuliaPackaging/Requires.jl/") | |
3578 | (synopsis "Faster package loader") | |
3579 | (description "This package make loading packages faster, maybe. It | |
3580 | supports specifying glue code in packages which will load automatically when | |
3581 | another package is loaded, so that explicit dependencies (and long load times) | |
3582 | can be avoided.") | |
3583 | (license license:expat))) | |
3584 | ||
e9a0f6a4 EF |
3585 | (define-public julia-reversediff |
3586 | (package | |
3587 | (name "julia-reversediff") | |
3588 | (version "1.9.0") | |
3589 | (source | |
3590 | (origin | |
3591 | (method git-fetch) | |
3592 | (uri (git-reference | |
3593 | (url "https://github.com/JuliaDiff/ReverseDiff.jl") | |
3594 | (commit (string-append "v" version)))) | |
3595 | (file-name (git-file-name name version)) | |
3596 | (sha256 | |
3597 | (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl")))) | |
3598 | (build-system julia-build-system) | |
3599 | (propagated-inputs | |
3600 | `(("julia-diffresults" ,julia-diffresults) | |
3601 | ("julia-diffrules" ,julia-diffrules) | |
3602 | ("julia-forwarddiff" ,julia-forwarddiff) | |
3603 | ("julia-functionwrappers" ,julia-functionwrappers) | |
3604 | ("julia-macrotools" ,julia-macrotools) | |
3605 | ("julia-nanmath" ,julia-nanmath) | |
3606 | ("julia-specialfunctions" ,julia-specialfunctions) | |
3607 | ("julia-staticarrays" ,julia-staticarrays))) | |
3608 | (native-inputs | |
3609 | `(("julia-difftests" ,julia-difftests) | |
3610 | ("julia-fillarrays" ,julia-fillarrays))) | |
3611 | (home-page "https://github.com/JuliaDiff/ReverseDiff.jl") | |
3612 | (synopsis "Reverse Mode Automatic Differentiation for Julia") | |
3613 | (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based | |
3614 | reverse mode @acronym{AD, automatic differentiation}, that implements methods to | |
3615 | take gradients, Jacobians, Hessians, and higher-order derivatives of native | |
3616 | Julia functions (or any callable object, really).") | |
3617 | (license license:expat))) | |
3618 | ||
dd7a77c3 | 3619 | (define-public julia-richardson |
3620 | (package | |
3621 | (name "julia-richardson") | |
3622 | (version "1.4.0") | |
3623 | (source | |
3624 | (origin | |
3625 | (method git-fetch) | |
3626 | (uri (git-reference | |
3627 | (url "https://github.com/JuliaMath/Richardson.jl") | |
3628 | (commit (string-append "v" version)))) | |
3629 | (file-name (git-file-name name version)) | |
3630 | (sha256 | |
3631 | (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx")))) | |
3632 | (build-system julia-build-system) | |
3633 | (home-page "https://juliapackages.com/p/richardson") | |
3634 | (synopsis "Extrapolate function using Richardson method") | |
3635 | (description "This package provides a function extrapolate that | |
3636 | extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f} | |
3637 | only at a geometric sequence of points @code{> x0} (or optionally @code{< | |
3638 | x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken | |
3639 | tableau, which adaptively increases the degree of an extrapolation polynomial | |
3640 | until convergence is achieved to a desired tolerance (or convergence stalls | |
3641 | due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to | |
3642 | high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some | |
3643 | other power series in @code{h}.") | |
3644 | (license license:expat))) | |
3645 | ||
1fde30c2 | 3646 | (define-public julia-rotations |
d09223ed EF |
3647 | ;; This is the first commit with support for julia-1.6. |
3648 | (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788") | |
3649 | (revision "1")) | |
3650 | (package | |
3651 | (name "julia-rotations") | |
3652 | (version (git-version "1.0.2" revision commit)) | |
3653 | (source | |
3654 | (origin | |
3655 | (method git-fetch) | |
3656 | (uri (git-reference | |
3657 | (url "https://github.com/JuliaGeometry/Rotations.jl") | |
3658 | (commit commit))) | |
3659 | (file-name (git-file-name name version)) | |
3660 | (sha256 | |
3661 | (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19")))) | |
3662 | (build-system julia-build-system) | |
3663 | (propagated-inputs | |
3664 | `(("julia-staticarrays" ,julia-staticarrays))) | |
3665 | (native-inputs | |
3666 | `(("julia-benchmarktools" ,julia-benchmarktools) | |
3667 | ("julia-forwarddiff" ,julia-forwarddiff) | |
3668 | ("julia-unitful" ,julia-unitful))) | |
3669 | (home-page "https://github.com/JuliaGeometry/Rotations.jl") | |
3670 | (synopsis "Julia implementations for different rotation parameterisations") | |
3671 | (description "This package implements various 3D rotation parameterizations | |
1fde30c2 EF |
3672 | and defines conversions between them. At their heart, each rotation |
3673 | parameterization is a 3×3 unitary (orthogonal) matrix (based on the | |
3674 | @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin | |
3675 | through matrix-vector multiplication.") | |
d09223ed | 3676 | (license license:expat)))) |
1fde30c2 | 3677 | |
9f3dae8f EF |
3678 | (define-public julia-safetestsets |
3679 | ;; The only release tag is the first commit in the repository. | |
3680 | (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21") | |
3681 | (revision "1")) | |
3682 | (package | |
3683 | (name "julia-safetestsets") | |
3684 | (version (git-version "0.0.1" revision commit)) | |
3685 | (source | |
3686 | (origin | |
3687 | (method git-fetch) | |
3688 | (uri (git-reference | |
3689 | (url "https://github.com/YingboMa/SafeTestsets.jl") | |
3690 | (commit commit))) | |
3691 | (file-name (git-file-name name version)) | |
3692 | (sha256 | |
3693 | (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96")))) | |
3694 | (build-system julia-build-system) | |
3695 | (arguments | |
3696 | `(#:julia-package-name "SafeTestsets")) | |
3697 | (native-inputs | |
3698 | `(("julia-staticarrays" ,julia-staticarrays))) | |
3699 | (home-page "https://github.com/YingboMa/SafeTestsets.jl") | |
3700 | (synopsis "Julia's testset in a module") | |
3701 | (description "This package contains the testset from Julia, packaged into | |
3702 | a loadable module.") | |
3703 | (license license:expat)))) | |
3704 | ||
647edfd0 EF |
3705 | (define-public julia-sass |
3706 | (package | |
3707 | (name "julia-sass") | |
3708 | (version "0.2.0") | |
3709 | (source | |
3710 | (origin | |
3711 | (method git-fetch) | |
3712 | (uri (git-reference | |
3713 | (url "https://github.com/piever/Sass.jl") | |
3714 | (commit (string-append "v" version)))) | |
3715 | (file-name (git-file-name name version)) | |
3716 | (sha256 | |
3717 | (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92")))) | |
3718 | (build-system julia-build-system) | |
3719 | (propagated-inputs | |
3720 | `(("julia-libsass-jll" ,julia-libsass-jll))) | |
3721 | (home-page "https://github.com/piever/Sass.jl") | |
3722 | (synopsis "Compile scss and sass file to css") | |
3723 | (description "This package provides a simple Julian API to use the | |
3724 | @code{libsass} library to compile scss and sass files to css.") | |
3725 | (license license:expat))) | |
3726 | ||
014421ee EF |
3727 | (define-public julia-scratch |
3728 | (package | |
3729 | (name "julia-scratch") | |
48bb6199 | 3730 | (version "1.1.0") |
014421ee EF |
3731 | (source |
3732 | (origin | |
3733 | (method git-fetch) | |
3734 | (uri (git-reference | |
3735 | (url "https://github.com/JuliaPackaging/Scratch.jl") | |
3736 | (commit (string-append "v" version)))) | |
3737 | (file-name (git-file-name name version)) | |
3738 | (sha256 | |
3739 | (base32 | |
48bb6199 | 3740 | "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx")))) |
014421ee EF |
3741 | (build-system julia-build-system) |
3742 | (arguments | |
3743 | `(#:tests? #f)) ; Test suite tries to access the Julia package registry. | |
3744 | (home-page "https://github.com/JuliaPackaging/Scratch.jl") | |
3745 | (synopsis "Scratch spaces for all your persistent mutable data needs") | |
3746 | (description "This repository implements the scratch spaces API for | |
3747 | package-specific mutable containers of data. These spaces can contain datasets, | |
3748 | text, binaries, or any other kind of data that would be convenient to store in | |
3749 | a location specific to your package. As compared to Artifacts, these containers | |
3750 | of data are mutable. Because the scratch space location on disk is not very | |
3751 | user-friendly, scratch spaces should, in general, not be used for a storing | |
3752 | files that the user must interact with through a file browser.") | |
3753 | (license license:expat))) | |
3754 | ||
1ba8c88f EF |
3755 | (define-public julia-showoff |
3756 | (package | |
3757 | (name "julia-showoff") | |
3758 | (version "1.0.2") | |
3759 | (source | |
3760 | (origin | |
3761 | (method git-fetch) | |
3762 | (uri (git-reference | |
3763 | (url "https://github.com/JuliaGraphics/Showoff.jl") | |
3764 | (commit (string-append "v" version)))) | |
3765 | (file-name (git-file-name name version)) | |
3766 | (sha256 | |
3767 | (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53")))) | |
3768 | (build-system julia-build-system) | |
3769 | (home-page "https://github.com/JuliaGraphics/Showoff.jl") | |
3770 | (synopsis "Nicely format an array of n things for tables and plots") | |
3771 | (description "@code{Showoff} provides an interface for consistently | |
3772 | formatting an array of n things, e.g. numbers, dates, unitful values. It's used | |
3773 | in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.") | |
3774 | (license license:expat))) | |
3775 | ||
63a83375 EF |
3776 | (define-public julia-simpletraits |
3777 | (package | |
3778 | (name "julia-simpletraits") | |
b9264f28 | 3779 | (version "0.9.4") |
63a83375 EF |
3780 | (source |
3781 | (origin | |
3782 | (method git-fetch) | |
3783 | (uri (git-reference | |
3784 | (url "https://github.com/mauro3/SimpleTraits.jl") | |
3785 | (commit (string-append "v" version)))) | |
3786 | (file-name (git-file-name name version)) | |
3787 | (sha256 | |
b9264f28 | 3788 | (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05")))) |
63a83375 EF |
3789 | (build-system julia-build-system) |
3790 | (propagated-inputs | |
3791 | `(("julia-macrotools" ,julia-macrotools))) | |
3792 | (home-page "https://github.com/mauro3/SimpleTraits.jl") | |
3793 | (synopsis "Simple Traits for Julia") | |
3794 | (description "This package provides a macro-based implementation of traits. | |
3795 | The main idea behind traits is to group types outside the type-hierarchy and to | |
3796 | make dispatch work with that grouping. The difference to Union-types is that | |
3797 | types can be added to a trait after the creation of the trait, whereas Union | |
3798 | types are fixed after creation.") | |
3799 | (license license:expat))) | |
3800 | ||
c0f5dd63 EF |
3801 | (define-public julia-sortingalgorithms |
3802 | (package | |
3803 | (name "julia-sortingalgorithms") | |
bf796e1b | 3804 | (version "1.0.1") |
c0f5dd63 EF |
3805 | (source |
3806 | (origin | |
3807 | (method git-fetch) | |
3808 | (uri (git-reference | |
3809 | (url "https://github.com/JuliaCollections/SortingAlgorithms.jl") | |
bf796e1b | 3810 | (commit (string-append "v" version)))) |
c0f5dd63 EF |
3811 | (file-name (git-file-name name version)) |
3812 | (sha256 | |
bf796e1b | 3813 | (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb")))) |
c0f5dd63 EF |
3814 | (build-system julia-build-system) |
3815 | (arguments | |
3816 | `(#:tests? #f)) ; cycle with StatsBase.jl | |
3817 | (propagated-inputs | |
3818 | `(("julia-datastructures" ,julia-datastructures))) | |
3819 | ;(native-inputs | |
3820 | ; `(("julia-statsbase" ,julia-statsbase))) | |
3821 | (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl") | |
3822 | (synopsis "Extra sorting algorithms extending Julia's sorting API") | |
3823 | (description "The SortingAlgorithms package provides three sorting | |
3824 | algorithms that can be used with Julia's standard sorting API: heapsort, | |
3825 | timsort and radixsort.") | |
3826 | (license license:expat))) | |
3827 | ||
3d98a16a | 3828 | (define-public julia-specialfunctions |
3829 | (package | |
3830 | (name "julia-specialfunctions") | |
22876331 | 3831 | (version "1.6.0") |
3d98a16a | 3832 | (source |
3833 | (origin | |
3834 | (method git-fetch) | |
3835 | (uri (git-reference | |
3836 | (url "https://github.com/JuliaMath/SpecialFunctions.jl") | |
3837 | (commit (string-append "v" version)))) | |
3838 | (file-name (git-file-name name version)) | |
3839 | (sha256 | |
22876331 | 3840 | (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0")))) |
3d98a16a | 3841 | (build-system julia-build-system) |
3842 | (inputs | |
3843 | `(("julia-chainrulestestutils" ,julia-chainrulestestutils))) | |
3844 | (propagated-inputs | |
3845 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
22876331 | 3846 | ("julia-logexpfunctions" ,julia-logexpfunctions) |
3d98a16a | 3847 | ("julia-openspecfun-jll" ,julia-openspecfun-jll))) |
3848 | (home-page "https://github.com/JuliaMath/SpecialFunctions.jl") | |
3849 | (synopsis "Special mathematical functions") | |
3850 | (description "This package provides special mathematical functions, | |
3851 | including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and | |
3852 | cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and | |
3853 | polygamma functions.") | |
8f856c80 EF |
3854 | (license license:expat))) |
3855 | ||
3856 | (define-public julia-splitapplycombine | |
3857 | (package | |
3858 | (name "julia-splitapplycombine") | |
3859 | (version "1.1.4") | |
3860 | (source | |
3861 | (origin | |
3862 | (method git-fetch) | |
3863 | (uri (git-reference | |
3864 | (url "https://github.com/JuliaData/SplitApplyCombine.jl") | |
3865 | (commit (string-append "v" version)))) | |
3866 | (file-name (git-file-name name version)) | |
3867 | (sha256 | |
3868 | (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x")))) | |
3869 | (build-system julia-build-system) | |
3870 | (propagated-inputs | |
3871 | `(("julia-dictionaries" ,julia-dictionaries) | |
3872 | ("julia-indexing" ,julia-indexing))) | |
3873 | (home-page "https://github.com/JuliaData/SplitApplyCombine.jl") | |
3874 | (synopsis "Split-apply-combine strategies for Julia") | |
3875 | (description "@code{SplitApplyCombine.jl} provides high-level, generic tools | |
3876 | for manipulating data - particularly focussing on data in nested containers. An | |
3877 | emphasis is placed on ensuring split-apply-combine strategies are easy to apply, | |
3878 | and work reliably for arbitrary iterables and in an optimized way with the data | |
3879 | structures included in Julia's standard library.") | |
3d98a16a | 3880 | (license license:expat))) |
3881 | ||
47f67c56 EF |
3882 | (define-public julia-stablerngs |
3883 | (package | |
3884 | (name "julia-stablerngs") | |
3885 | (version "1.0.0") | |
3886 | (source | |
3887 | (origin | |
3888 | (method git-fetch) | |
3889 | (uri (git-reference | |
3890 | (url "https://github.com/JuliaRandom/StableRNGs.jl") | |
3891 | (commit (string-append "v" version)))) | |
3892 | (file-name (git-file-name name version)) | |
3893 | (sha256 | |
3894 | (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r")))) | |
3895 | (build-system julia-build-system) | |
3896 | (home-page "https://github.com/JuliaRandom/StableRNGs.jl") | |
3897 | (synopsis "Julia RNG with stable streams") | |
3898 | (description "This package intends to provide a simple RNG with stable | |
3899 | streams, suitable for tests in packages which need reproducible streams of | |
3900 | random numbers across Julia versions. Indeed, the Julia RNGs provided by | |
3901 | default are documented to have non-stable streams (which for example enables | |
3902 | some performance improvements).") | |
3903 | (license license:expat))) | |
3904 | ||
e490262f EF |
3905 | (define-public julia-stackviews |
3906 | (package | |
3907 | (name "julia-stackviews") | |
3908 | (version "0.1.1") | |
3909 | (source | |
3910 | (origin | |
3911 | (method git-fetch) | |
3912 | (uri (git-reference | |
3913 | (url "https://github.com/JuliaArrays/StackViews.jl") | |
3914 | (commit (string-append "v" version)))) | |
3915 | (file-name (git-file-name name version)) | |
3916 | (sha256 | |
3917 | (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7")))) | |
3918 | (build-system julia-build-system) | |
3919 | (arguments | |
3920 | `(#:tests? #f ; Documenter.jl not packaged yet | |
3921 | #:phases | |
3922 | (modify-phases %standard-phases | |
3923 | (add-after 'unpack 'skip-doctest | |
3924 | (lambda _ | |
3925 | (substitute* "test/runtests.jl" | |
3926 | ((".*doctest.*") "")) | |
3927 | #t))))) | |
3928 | (propagated-inputs | |
3929 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
3930 | ;(native-inputs | |
3931 | ; `(("julia-aqua" ,julia-aqua) | |
3932 | ; ("julia-documenter" ,julia-documenter))) | |
3933 | (home-page "https://github.com/JuliaArrays/StackViews.jl") | |
3934 | (synopsis "No more catcat") | |
3935 | (description "StackViews provides only one array type: @code{StackView}. | |
3936 | There are multiple ways to understand @code{StackView}: | |
3937 | @itemize | |
3938 | @item inverse of @code{eachslice} | |
3939 | @item @code{cat} variant | |
3940 | @item view object | |
3941 | @item lazy version of @code{repeat} special case | |
3942 | @end itemize") | |
3943 | (license license:expat))) | |
3944 | ||
6496b31a EF |
3945 | (define-public julia-static |
3946 | (package | |
3947 | (name "julia-static") | |
ace03e01 | 3948 | (version "0.3.0") |
6496b31a EF |
3949 | (source |
3950 | (origin | |
3951 | (method git-fetch) | |
3952 | (uri (git-reference | |
3953 | (url "https://github.com/SciML/Static.jl") | |
3954 | (commit (string-append "v" version)))) | |
3955 | (file-name (git-file-name name version)) | |
3956 | (sha256 | |
ace03e01 | 3957 | (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2")))) |
6496b31a EF |
3958 | (build-system julia-build-system) |
3959 | (propagated-inputs | |
3960 | `(("julia-ifelse" ,julia-ifelse))) | |
3961 | (native-inputs | |
3962 | `(("julia-aqua" ,julia-aqua))) | |
3963 | (home-page "https://github.com/SciML/Static.jl") | |
3964 | (synopsis "Static types useful for dispatch and generated functions") | |
3965 | (description "Static.jl defines a limited set of statically parameterized | |
3966 | types and a common interface that is shared between them.") | |
3967 | (license license:expat))) | |
3968 | ||
be802277 | 3969 | (define-public julia-staticarrays |
3970 | (package | |
3971 | (name "julia-staticarrays") | |
d6bebca9 | 3972 | (version "1.2.13") |
be802277 | 3973 | (source |
3974 | (origin | |
3975 | (method git-fetch) | |
3976 | (uri (git-reference | |
3977 | (url "https://github.com/JuliaArrays/StaticArrays.jl") | |
3978 | (commit (string-append "v" version)))) | |
3979 | (file-name (git-file-name name version)) | |
3980 | (sha256 | |
d6bebca9 | 3981 | (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79")))) |
be802277 | 3982 | (build-system julia-build-system) |
3983 | (inputs | |
3984 | `(("julia-benchmarktools" ,julia-benchmarktools))) | |
3985 | (home-page "https://github.com/JuliaArrays/StaticArrays.jl") | |
3986 | (synopsis "Statically sized arrays") | |
3987 | (description "This package provides a framework for implementing | |
3988 | statically sized arrays in Julia, using the abstract type | |
3989 | @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of | |
3990 | @code{StaticArray} will provide fast implementations of common array and | |
3991 | linear algebra operations.") | |
3992 | (license license:expat))) | |
3993 | ||
f7f1efea EF |
3994 | (define-public julia-statsapi |
3995 | (package | |
3996 | (name "julia-statsapi") | |
3997 | (version "1.0.0") | |
3998 | (source | |
3999 | (origin | |
4000 | (method git-fetch) | |
4001 | (uri (git-reference | |
4002 | (url "https://github.com/JuliaStats/StatsAPI.jl") | |
4003 | (commit (string-append "v" version)))) | |
4004 | (file-name (git-file-name name version)) | |
4005 | (sha256 | |
4006 | (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv")))) | |
4007 | (build-system julia-build-system) | |
4008 | (home-page "https://juliastats.org/") | |
4009 | (synopsis "Statistics-focused namespace for packages to share functions") | |
4010 | (description "This package provides a namespace for data-related generic | |
4011 | function definitions to solve the optional dependency problem; packages wishing | |
4012 | to share and/or extend functions can avoid depending directly on each other by | |
4013 | moving the function definition to @code{StatsAPI.jl} and each package taking a | |
4014 | dependency on it.") | |
4015 | (license license:expat))) | |
4016 | ||
2e317bbf EF |
4017 | (define-public julia-statsbase |
4018 | (package | |
4019 | (name "julia-statsbase") | |
4020 | (version "0.33.8") | |
4021 | (source | |
4022 | (origin | |
4023 | (method git-fetch) | |
4024 | (uri (git-reference | |
4025 | (url "https://github.com/JuliaStats/StatsBase.jl") | |
4026 | (commit (string-append "v" version)))) | |
4027 | (file-name (git-file-name name version)) | |
4028 | (sha256 | |
4029 | (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi")))) | |
4030 | (build-system julia-build-system) | |
4031 | (propagated-inputs | |
4032 | `(("julia-dataapi" ,julia-dataapi) | |
4033 | ("julia-datastructures" ,julia-datastructures) | |
4034 | ("julia-missings" ,julia-missings) | |
4035 | ("julia-sortingalgorithms" ,julia-sortingalgorithms) | |
4036 | ("julia-statsapi" ,julia-statsapi))) | |
4037 | (native-inputs | |
4038 | `(("julia-stablerngs" ,julia-stablerngs))) | |
4039 | (home-page "https://github.com/JuliaStats/StatsBase.jl") | |
4040 | (synopsis "Basic statistics for Julia") | |
4041 | (description "StatsBase.jl is a Julia package that provides basic support | |
4042 | for statistics. Particularly, it implements a variety of statistics-related | |
4043 | functions, such as scalar statistics, high-order moment computation, counting, | |
4044 | ranking, covariances, sampling, and empirical density estimation.") | |
4045 | (license license:expat))) | |
4046 | ||
50255943 EF |
4047 | (define-public julia-stringdistances |
4048 | (package | |
4049 | (name "julia-stringdistances") | |
4050 | (version "0.10.0") | |
4051 | (source | |
4052 | (origin | |
4053 | (method git-fetch) | |
4054 | (uri (git-reference | |
4055 | (url "https://github.com/matthieugomez/StringDistances.jl") | |
4056 | (commit (string-append "v" version)))) | |
4057 | (file-name (git-file-name name version)) | |
4058 | (sha256 | |
4059 | (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7")))) | |
4060 | (build-system julia-build-system) | |
4061 | (propagated-inputs | |
4062 | `(("julia-distances" ,julia-distances))) | |
4063 | (home-page "https://github.com/matthieugomez/StringDistances.jl") | |
4064 | (synopsis "String Distances in Julia") | |
4065 | (description "This package provides string distances in Julia. Distances | |
4066 | are defined for @code{AbstractStrings}, and any iterator that define | |
4067 | @code{length()}. The package also defines Distance \"modifiers\" that can be | |
4068 | applied to any distance.") | |
4069 | (license license:expat))) | |
4070 | ||
adb3d879 EF |
4071 | (define-public julia-structtypes |
4072 | (package | |
4073 | (name "julia-structtypes") | |
4074 | (version "1.7.2") | |
4075 | (source | |
4076 | (origin | |
4077 | (method git-fetch) | |
4078 | (uri (git-reference | |
4079 | (url "https://github.com/JuliaData/StructTypes.jl") | |
4080 | (commit (string-append "v" version)))) | |
4081 | (file-name (git-file-name name version)) | |
4082 | (sha256 | |
4083 | (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1")))) | |
4084 | (build-system julia-build-system) | |
4085 | (home-page "https://juliadata.github.io/StructTypes.jl/stable/") | |
4086 | (synopsis "Abstract definitions and convenience methods for Julia objects") | |
4087 | (description "This package provides the @code{StructTypes.StructType} trait | |
4088 | for Julia types to declare the kind of \"struct\" they are, providing | |
4089 | serialization/deserialization packages patterns and strategies to automatically | |
4090 | construct objects.") | |
4091 | (license license:expat))) | |
4092 | ||
ef9a5521 EF |
4093 | (define-public julia-suppressor |
4094 | (package | |
4095 | (name "julia-suppressor") | |
4096 | (version "0.2.0") | |
4097 | (source | |
4098 | (origin | |
4099 | (method git-fetch) | |
4100 | (uri (git-reference | |
4101 | (url "https://github.com/JuliaIO/Suppressor.jl") | |
4102 | (commit (string-append "v" version)))) | |
4103 | (file-name (git-file-name name version)) | |
4104 | (sha256 | |
4105 | (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc")))) | |
4106 | (build-system julia-build-system) | |
4107 | (home-page "https://github.com/JuliaIO/Suppressor.jl") | |
4108 | (synopsis "Capture stdout and sterr") | |
4109 | (description "Julia macros for suppressing and/or capturing output (stdout), | |
4110 | warnings (stderr) or both streams at the same time.") | |
4111 | (license license:expat))) | |
4112 | ||
40a7da2b EF |
4113 | (define-public julia-tableiointerface |
4114 | (package | |
4115 | (name "julia-tableiointerface") | |
4116 | (version "0.1.6") | |
4117 | (source | |
4118 | (origin | |
4119 | (method git-fetch) | |
4120 | (uri (git-reference | |
4121 | (url "https://github.com/lungben/TableIOInterface.jl") | |
4122 | (commit (string-append "v" version)))) | |
4123 | (file-name (git-file-name name version)) | |
4124 | (sha256 | |
4125 | (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn")))) | |
4126 | (build-system julia-build-system) | |
4127 | (home-page "https://github.com/lungben/TableIOInterface.jl") | |
4128 | (synopsis "File formats based on file extensions") | |
4129 | (description "This package determines tabular file formats based on file | |
4130 | extensions. It is intended to be the base both for @code{TableIO.jl} and for | |
4131 | the @code{Pluto.jl} tabular data import functionality.") | |
4132 | (license license:expat))) | |
4133 | ||
2bd2406c EF |
4134 | (define-public julia-tables |
4135 | (package | |
4136 | (name "julia-tables") | |
9fe69d78 | 4137 | (version "1.4.4") |
2bd2406c EF |
4138 | (source |
4139 | (origin | |
4140 | (method git-fetch) | |
4141 | (uri (git-reference | |
4142 | (url "https://github.com/JuliaData/Tables.jl") | |
4143 | (commit (string-append "v" version)))) | |
4144 | (file-name (git-file-name name version)) | |
4145 | (sha256 | |
9fe69d78 | 4146 | (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb")))) |
2bd2406c EF |
4147 | (build-system julia-build-system) |
4148 | (propagated-inputs | |
4149 | `(("julia-dataapi" ,julia-dataapi) | |
4150 | ("julia-datavalueinterfaces" ,julia-datavalueinterfaces) | |
4151 | ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) | |
4152 | ("julia-tabletraits" ,julia-tabletraits))) | |
4153 | (native-inputs | |
4154 | `(("julia-datavalues" ,julia-datavalues) | |
4155 | ("julia-queryoperators" ,julia-queryoperators))) | |
4156 | (home-page "https://github.com/JuliaData/Tables.jl") | |
4157 | (synopsis "Interface for tables in Julia") | |
4158 | (description "The @code{Tables.jl} package provides simple, yet powerful | |
4159 | interface functions for working with all kinds tabular data.") | |
4160 | (license license:expat))) | |
4161 | ||
a61e13f7 EF |
4162 | (define-public julia-tableshowutils |
4163 | ;; The 0.2.5 release is not fully compatable with newer versions of Julia. | |
4164 | (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460") | |
4165 | (revision "1")) | |
4166 | (package | |
4167 | (name "julia-tableshowutils") | |
4168 | (version "0.2.5") | |
4169 | (source | |
4170 | (origin | |
4171 | (method git-fetch) | |
4172 | (uri (git-reference | |
4173 | (url "https://github.com/queryverse/TableShowUtils.jl") | |
4174 | (commit commit))) | |
4175 | (file-name (git-file-name name version)) | |
4176 | (sha256 | |
4177 | (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5")))) | |
4178 | (build-system julia-build-system) | |
4179 | (propagated-inputs | |
4180 | `(("julia-datavalues" ,julia-datavalues) | |
4181 | ("julia-json" ,julia-json))) | |
4182 | (home-page "https://github.com/queryverse/TableShowUtils.jl") | |
4183 | (synopsis "Implement show for TableTraits.jl types") | |
4184 | (description "This package provides some common helper functions that make | |
4185 | it easier to implement various @code{Base.show} functions for types that | |
4186 | participate in the @code{TableTraits.jl} ecosystem.") | |
4187 | (license license:expat)))) | |
4188 | ||
3f40ba72 EF |
4189 | (define-public julia-tabletraits |
4190 | (package | |
4191 | (name "julia-tabletraits") | |
4192 | (version "1.0.1") | |
4193 | (source | |
4194 | (origin | |
4195 | (method git-fetch) | |
4196 | (uri (git-reference | |
4197 | (url "https://github.com/queryverse/TableTraits.jl") | |
4198 | (commit (string-append "v" version)))) | |
4199 | (file-name (git-file-name name version)) | |
4200 | (sha256 | |
4201 | (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4")))) | |
4202 | (build-system julia-build-system) | |
4203 | (propagated-inputs | |
4204 | `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions))) | |
4205 | (home-page "https://github.com/queryverse/TableTraits.jl") | |
4206 | (synopsis "Traits for Julia tables") | |
4207 | (description "TableTraits defines a generic interface for tabular data.") | |
4208 | (license license:expat))) | |
4209 | ||
6a2d36c7 EF |
4210 | (define-public julia-tensorcore |
4211 | (package | |
4212 | (name "julia-tensorcore") | |
4213 | (version "0.1.1") | |
4214 | (source | |
4215 | (origin | |
4216 | (method git-fetch) | |
4217 | (uri (git-reference | |
4218 | (url "https://github.com/JuliaMath/TensorCore.jl") | |
4219 | (commit (string-append "v" version)))) | |
4220 | (file-name (git-file-name name version)) | |
4221 | (sha256 | |
4222 | (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy")))) | |
4223 | (build-system julia-build-system) | |
4224 | (home-page "https://github.com/JuliaMath/TensorCore.jl") | |
4225 | (synopsis "Tensor-algebra definitions") | |
4226 | (description "This package is intended as a lightweight foundation for | |
4227 | tensor operations across the Julia ecosystem. Currently it exports three | |
4228 | operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor, | |
4229 | product preserves all dimensions}, and @acronym{boxdot, contracts neighboring | |
4230 | dimensions}.") | |
4231 | (license license:expat))) | |
4232 | ||
6ddeadba EF |
4233 | (define-public julia-testimages |
4234 | (package | |
4235 | (name "julia-testimages") | |
4236 | (version "1.5.0") | |
4237 | (source | |
4238 | (origin | |
4239 | (method git-fetch) | |
4240 | (uri (git-reference | |
4241 | (url "https://github.com/JuliaImages/TestImages.jl") | |
4242 | (commit (string-append "v" version)))) | |
4243 | (file-name (git-file-name name version)) | |
4244 | (sha256 | |
4245 | (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy")))) | |
4246 | (build-system julia-build-system) | |
4247 | (arguments | |
4248 | `(#:tests? #f)) ; cycle with ImageMagick.jl | |
4249 | (propagated-inputs | |
4250 | `(("julia-axisarrays" ,julia-axisarrays) | |
4251 | ("julia-colortypes" ,julia-colortypes) | |
4252 | ("julia-fileio" ,julia-fileio) | |
4253 | ("julia-offsetarrays" ,julia-offsetarrays) | |
4254 | ("julia-stringdistances" ,julia-stringdistances))) | |
4255 | ;(native-inputs | |
4256 | ; `(("julia-colors" ,julia-colors) | |
4257 | ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
4258 | ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment) | |
4259 | ; ("julia-imagemagick" ,julia-imagemagick) | |
4260 | ; ("julia-ometiff" ,julia-ometiff) | |
4261 | ; ("julia-referencetests" ,julia-referencetests))) | |
4262 | (home-page "https://testimages.juliaimages.org/") | |
4263 | (synopsis "Standard test images for Julia") | |
4264 | (description "This package provides a convenient Julia interface for loading | |
4265 | standard named test images and example images for the internal usage in | |
4266 | @code{JuliaImages}. This can be used in conjunction with the @code{Images} | |
4267 | package.") | |
4268 | (license license:expat))) | |
4269 | ||
916c2669 EF |
4270 | (define-public julia-tracker |
4271 | (package | |
4272 | (name "julia-tracker") | |
4273 | (version "0.2.12") | |
4274 | (source | |
4275 | (origin | |
4276 | (method git-fetch) | |
4277 | (uri (git-reference | |
4278 | (url "https://github.com/FluxML/Tracker.jl") | |
4279 | (commit (string-append "v" version)))) | |
4280 | (file-name (git-file-name name version)) | |
4281 | (sha256 | |
7975a64b EF |
4282 | (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j")) |
4283 | (patches (search-patches "julia-tracker-16-compat.patch")))) | |
916c2669 EF |
4284 | (build-system julia-build-system) |
4285 | (propagated-inputs | |
4286 | `(("julia-adapt" ,julia-adapt) | |
4287 | ("julia-diffrules" ,julia-diffrules) | |
4288 | ("julia-forwarddiff" ,julia-forwarddiff) | |
4289 | ("julia-macrotools" ,julia-macrotools) | |
4290 | ("julia-nanmath" ,julia-nanmath) | |
4291 | ("julia-nnlib" ,julia-nnlib) | |
4292 | ("julia-requires" ,julia-requires) | |
4293 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
4294 | (native-inputs | |
4295 | `(("julia-pdmats" ,julia-pdmats))) | |
4296 | (home-page "https://github.com/FluxML/Tracker.jl") | |
4297 | (synopsis "Operator overloading reverse-mode automatic differentiator") | |
4298 | (description "@code{Tracker.jl} previously provided @code{Flux.jl} with | |
4299 | automatic differentiation for its machine learning platform.") | |
4300 | (license license:expat))) | |
4301 | ||
adedfd07 EF |
4302 | (define-public julia-typedtables |
4303 | (package | |
4304 | (name "julia-typedtables") | |
6bf32d13 | 4305 | (version "1.4.0") |
adedfd07 EF |
4306 | (source |
4307 | (origin | |
4308 | (method git-fetch) | |
4309 | (uri (git-reference | |
4310 | (url "https://github.com/JuliaData/TypedTables.jl") | |
4311 | (commit (string-append "v" version)))) | |
4312 | (file-name (git-file-name name version)) | |
4313 | (sha256 | |
6bf32d13 | 4314 | (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i")))) |
adedfd07 EF |
4315 | (build-system julia-build-system) |
4316 | (propagated-inputs | |
4317 | `(("julia-adapt" ,julia-adapt) | |
4318 | ("julia-splitapplycombine" ,julia-splitapplycombine) | |
4319 | ("julia-tables" ,julia-tables))) | |
4320 | (home-page "https://github.com/JuliaData/TypedTables.jl") | |
4321 | (synopsis "Column-based storage for data analysis in Julia") | |
4322 | (description "@code{TypedTables.jl} provides two column-based storage | |
4323 | containers: @code{Table} and @code{FlexTable}, both of which represent an array | |
4324 | of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use | |
4325 | and fast, and presents a very minimal new interface to learn.") | |
4326 | (license license:expat))) | |
4327 | ||
c1f7692f EF |
4328 | (define-public julia-unpack |
4329 | (package | |
4330 | (name "julia-unpack") | |
4331 | (version "1.0.2") | |
4332 | (source | |
4333 | (origin | |
4334 | (method git-fetch) | |
4335 | (uri (git-reference | |
4336 | (url "https://github.com/mauro3/UnPack.jl") | |
4337 | (commit (string-append "v" version)))) | |
4338 | (file-name (git-file-name name version)) | |
4339 | (sha256 | |
4340 | (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a")))) | |
4341 | (build-system julia-build-system) | |
4342 | (home-page "https://github.com/mauro3/UnPack.jl") | |
4343 | (synopsis "Pack and Unpack macros for Julia") | |
4344 | (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack | |
4345 | types, modules, and dictionaries.") | |
4346 | (license license:expat))) | |
4347 | ||
8f59a9fb | 4348 | (define-public julia-uris |
4349 | (package | |
4350 | (name "julia-uris") | |
8af35997 | 4351 | (version "1.3.0") |
8f59a9fb | 4352 | (source |
4353 | (origin | |
4354 | (method git-fetch) | |
4355 | (uri (git-reference | |
4356 | (url "https://github.com/JuliaWeb/URIs.jl") | |
4357 | (commit (string-append "v" version)))) | |
4358 | (file-name (git-file-name name version)) | |
4359 | (sha256 | |
8af35997 | 4360 | (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92")))) |
8f59a9fb | 4361 | (build-system julia-build-system) |
4362 | (arguments | |
4363 | '(#:julia-package-name "URIs" ;required to run tests | |
4364 | #:phases | |
4365 | (modify-phases %standard-phases | |
4366 | (add-before 'check 'change-dir | |
4367 | ;; Tests must be run from the testdir | |
4368 | (lambda* (#:key source outputs #:allow-other-keys) | |
4369 | (let ((out (assoc-ref outputs "out"))) | |
4370 | (chdir | |
4371 | (string-append out "/share/julia/packages/URIs/test"))) | |
4372 | #t))))) | |
4373 | ;; required for tests | |
4374 | (inputs `(("julia-json" ,julia-json))) | |
4375 | (home-page "https://github.com/JuliaWeb/URIs.jl") | |
4376 | (synopsis "URI parsing in Julia") | |
4377 | (description "@code{URIs.jl} is a Julia package that allows parsing and | |
4378 | working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC | |
4379 | 3986.") | |
4380 | (license license:expat))) | |
a8e3be6a | 4381 | |
4382 | (define-public julia-unitful | |
4383 | (package | |
4384 | (name "julia-unitful") | |
f6bc4657 | 4385 | (version "1.9.0") |
a8e3be6a | 4386 | (source |
4387 | (origin | |
4388 | (method git-fetch) | |
4389 | (uri (git-reference | |
4390 | (url "https://github.com/PainterQubits/Unitful.jl") | |
4391 | (commit (string-append "v" version)))) | |
4392 | (file-name (git-file-name name version)) | |
4393 | (sha256 | |
f6bc4657 | 4394 | (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq")))) |
a8e3be6a | 4395 | (build-system julia-build-system) |
4396 | (propagated-inputs | |
4397 | `(("julia-constructionbase" ,julia-constructionbase))) | |
4398 | (home-page "https://painterqubits.github.io/Unitful.jl/stable/") | |
4399 | (synopsis "Physical units in Julia") | |
4400 | (description "This package supports SI units and also many other unit | |
4401 | system.") | |
4402 | (license license:expat))) | |
568cebc2 | 4403 | |
34ab622d EF |
4404 | (define-public julia-versionparsing |
4405 | (package | |
4406 | (name "julia-versionparsing") | |
4407 | (version "1.2.0") | |
4408 | (source | |
4409 | (origin | |
4410 | (method git-fetch) | |
4411 | (uri (git-reference | |
4412 | (url "https://github.com/JuliaInterop/VersionParsing.jl") | |
4413 | (commit (string-append "v" version)))) | |
4414 | (file-name (git-file-name name version)) | |
4415 | (sha256 | |
4416 | (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva")))) | |
4417 | (build-system julia-build-system) | |
4418 | (home-page "https://github.com/JuliaInterop/VersionParsing.jl") | |
4419 | (synopsis "Flexible VersionNumber parsing in Julia") | |
4420 | (description "The @code{VersionParsing} package implements flexible parsing | |
4421 | of version-number strings into Julia's built-in @code{VersionNumber} type, via | |
4422 | the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)} | |
4423 | constructor, @code{vparse(string)} can handle version-number strings in a much | |
4424 | wider range of formats than are encompassed by the semver standard. This is | |
4425 | useful in order to support @code{VersionNumber} comparisons applied to | |
4426 | \"foreign\" version numbers from external packages.") | |
4427 | (license license:expat))) | |
4428 | ||
f34f8a3d EF |
4429 | (define-public julia-weakrefstrings |
4430 | (package | |
4431 | (name "julia-weakrefstrings") | |
4707ab2f | 4432 | (version "1.1.0") |
f34f8a3d EF |
4433 | (source |
4434 | (origin | |
4435 | (method git-fetch) | |
4436 | (uri (git-reference | |
4437 | (url "https://github.com/JuliaData/WeakRefStrings.jl") | |
4438 | (commit (string-append "v" version)))) | |
4439 | (file-name (git-file-name name version)) | |
4440 | (sha256 | |
4707ab2f | 4441 | (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219")))) |
f34f8a3d EF |
4442 | (build-system julia-build-system) |
4443 | (propagated-inputs | |
51ef08e5 EF |
4444 | `(("julia-dataapi" ,julia-dataapi) |
4445 | ("julia-parsers" ,julia-parsers))) | |
f34f8a3d EF |
4446 | (home-page "https://github.com/JuliaData/WeakRefStrings.jl") |
4447 | (synopsis "Efficient string representation and transfer in Julia") | |
4448 | (description "This package provides a minimal String type for Julia that | |
4449 | allows for efficient string representation and transfer") | |
4450 | (license license:expat))) | |
4451 | ||
20b79fed EF |
4452 | (define-public julia-woodburymatrices |
4453 | (package | |
4454 | (name "julia-woodburymatrices") | |
4455 | (version "0.5.3") | |
4456 | (source | |
4457 | (origin | |
4458 | (method git-fetch) | |
4459 | (uri (git-reference | |
4460 | (url "https://github.com/timholy/WoodburyMatrices.jl") | |
4461 | (commit (string-append "v" version)))) | |
4462 | (file-name (git-file-name name version)) | |
4463 | (sha256 | |
4464 | (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd")))) | |
4465 | (build-system julia-build-system) | |
4466 | (home-page "https://github.com/timholy/WoodburyMatrices.jl") | |
4467 | (synopsis "Support for the Woodbury matrix identity for Julia") | |
4468 | (description "This package provides support for the Woodbury matrix identity | |
4469 | for the Julia programming language. This is a generalization of the | |
4470 | Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious | |
4471 | for floating-point roundoff errors, so be prepared for a certain amount of | |
4472 | inaccuracy in the result.") | |
4473 | (license license:expat))) | |
4474 | ||
ddcc5d43 EF |
4475 | (define-public julia-zipfile |
4476 | (package | |
4477 | (name "julia-zipfile") | |
4478 | (version "0.9.3") | |
4479 | (source | |
4480 | (origin | |
4481 | (method git-fetch) | |
4482 | (uri (git-reference | |
4483 | (url "https://github.com/fhs/ZipFile.jl") | |
4484 | (commit (string-append "v" version)))) | |
4485 | (file-name (git-file-name name version)) | |
4486 | (sha256 | |
4487 | (base32 | |
4488 | "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k")))) | |
4489 | (build-system julia-build-system) | |
4490 | (propagated-inputs | |
4491 | `(("julia-zlib-jll" ,julia-zlib-jll))) | |
4492 | (home-page "https://github.com/fhs/ZipFile.jl") | |
4493 | (synopsis "Read/Write ZIP archives in Julia") | |
4494 | (description "This module provides support for reading and writing ZIP | |
4495 | archives in Julia.") | |
4496 | (license license:expat))) | |
4497 | ||
568cebc2 | 4498 | (define-public julia-zygoterules |
4499 | (package | |
4500 | (name "julia-zygoterules") | |
4501 | (version "0.2.1") | |
4502 | (source | |
4503 | (origin | |
4504 | (method git-fetch) | |
4505 | (uri (git-reference | |
4506 | (url "https://github.com/FluxML/ZygoteRules.jl") | |
4507 | (commit (string-append "v" version)))) | |
4508 | (file-name (git-file-name name version)) | |
4509 | (sha256 | |
4510 | (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs")))) | |
4511 | (build-system julia-build-system) | |
4512 | (propagated-inputs | |
4513 | `(("julia-macrotools" ,julia-macrotools))) | |
4514 | (home-page "https://github.com/FluxML/ZygoteRules.jl") | |
4515 | (synopsis "Add minimal custom gradients to Zygote") | |
4516 | (description "Minimal package which enables to add custom gradients to | |
4517 | Zygote, without depending on Zygote itself.") | |
4518 | (license license:expat))) | |
13f7f06c | 4519 | |
4520 | (define-public julia-zygote | |
4521 | (package | |
4522 | (name "julia-zygote") | |
8d787994 | 4523 | (version "0.6.17") |
13f7f06c | 4524 | (source |
4525 | (origin | |
4526 | (method git-fetch) | |
4527 | (uri (git-reference | |
4528 | (url "https://github.com/FluxML/Zygote.jl") | |
4529 | (commit (string-append "v" version)))) | |
4530 | (file-name (git-file-name name version)) | |
4531 | (sha256 | |
8d787994 | 4532 | (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b")))) |
13f7f06c | 4533 | (build-system julia-build-system) |
4534 | (arguments | |
4535 | `(#:tests? #f)) ;require CUDA, not packaged yet | |
4536 | (propagated-inputs | |
4537 | `(("julia-abstractffs" ,julia-abstractffts) | |
4538 | ("julia-chainrules" ,julia-chainrules) | |
4539 | ("julia-diffrules" ,julia-diffrules) | |
4540 | ("julia-fillarrays" ,julia-fillarrays) | |
4541 | ("julia-forwarddiff" ,julia-forwarddiff) | |
4542 | ("julia-irtools" ,julia-irtools) | |
4543 | ("julia-macrotools" ,julia-macrotools) | |
4544 | ("julia-nanmath" ,julia-nanmath) | |
4545 | ("julia-requires" ,julia-requires) | |
4546 | ("julia-specialfunctions" ,julia-specialfunctions) | |
4547 | ("julia-zygote-rules" ,julia-zygoterules))) | |
4548 | (home-page "https://fluxml.ai/Zygote.jl") | |
4549 | (synopsis "Automatic differentiation in Julia") | |
4550 | (description "Zygote provides source-to-source automatic | |
4551 | differentiation (AD) in Julia, and is the next-generation AD system for the | |
4552 | Flux differentiable programming framework.") | |
4553 | (license license:expat))) |