Release coccinelle-0.1

[bpt/coccinelle.git] / cocci.ml

(*
* Copyright 2005-2008, Ecole des Mines de Nantes, University of Copenhagen
* Yoann Padioleau, Julia Lawall, Rene Rydhof Hansen, Henrik Stuart, Gilles Muller
* This file is part of Coccinelle.
* 
* Coccinelle is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, according to version 2 of the License.
* 
* Coccinelle is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
* 
* You should have received a copy of the GNU General Public License
* along with Coccinelle.  If not, see <http://www.gnu.org/licenses/>.
* 
* The authors reserve the right to distribute this or future versions of
* Coccinelle under other licenses.
*)


open Common

module CCI = Ctlcocci_integration
module TAC = Type_annoter_c

(*****************************************************************************)
(* This file is a kind of driver. It gathers all the important functions 
 * from coccinelle in one place. The different entities in coccinelle are:
 *  - files
 *  - astc
 *  - astcocci
 *  - flow (contain nodes)
 *  - ctl  (contain rule_elems)
 * This file contains functions to transform one in another.
 *)
(*****************************************************************************)

(* --------------------------------------------------------------------- *)
(* C related *)
(* --------------------------------------------------------------------- *)
let cprogram_of_file file = 
  let (program2, _stat) = Parse_c.parse_print_error_heuristic file in
  program2 

let cprogram_of_file_cached file = 
  let (program2, _stat) = Parse_c.parse_cache file in
  program2


let cfile_of_program program2_with_ppmethod outf = 
  Unparse_c2.pp_program program2_with_ppmethod outf

(* for memoization, contains only one entry, the one for the SP *)
let _hparse = Hashtbl.create 101
let _hctl = Hashtbl.create 101

(* --------------------------------------------------------------------- *)
(* Cocci related *)
(* --------------------------------------------------------------------- *)
let sp_of_file2 file iso   =
  Common.memoized _hparse (file, iso) (fun () ->
    Parse_cocci.process file iso false)
let sp_of_file file iso    = 
  Common.profile_code "parse cocci" (fun () -> sp_of_file2 file iso)


(* --------------------------------------------------------------------- *)
(* Flow related *)
(* --------------------------------------------------------------------- *)
let print_flow flow = 
  Ograph_extended.print_ograph_mutable flow "/tmp/test.dot" true


let ast_to_flow_with_error_messages2 x =
  let flowopt = 
    try Ast_to_flow.ast_to_control_flow x
    with Ast_to_flow.Error x -> 
      Ast_to_flow.report_error x;
      None
  in
  flowopt +> do_option (fun flow -> 
    (* This time even if there is a deadcode, we still have a
     * flow graph, so I can try the transformation and hope the
     * deadcode will not bother us. 
     *)
    try Ast_to_flow.deadcode_detection flow
    with Ast_to_flow.Error (Ast_to_flow.DeadCode x) -> 
      Ast_to_flow.report_error (Ast_to_flow.DeadCode x);
  );
  flowopt
let ast_to_flow_with_error_messages a = 
  Common.profile_code "flow" (fun () -> ast_to_flow_with_error_messages2 a)


(* --------------------------------------------------------------------- *)
(* Ctl related *)
(* --------------------------------------------------------------------- *)
let ctls_of_ast2 ast ua pos =
  List.map2
    (function ast -> function (ua,pos) ->
      List.combine
        (if !Flag_cocci.popl
        then Popl.popl ast
        else Asttoctl2.asttoctl ast ua pos)
        (Asttomember.asttomember ast ua))
    ast (List.combine ua pos)

let ctls_of_ast ast ua =
  Common.profile_code "asttoctl2" (fun () -> ctls_of_ast2 ast ua)

(*****************************************************************************)
(* Some  debugging functions *)
(*****************************************************************************)

(* the inputs *)

let show_or_not_cfile2 cfile =
  if !Flag_cocci.show_c then begin
    Common.pr2_xxxxxxxxxxxxxxxxx ();
    pr2 ("processing C file: " ^ cfile);
    Common.pr2_xxxxxxxxxxxxxxxxx ();
    Common.command2 ("cat " ^ cfile);
  end
let show_or_not_cfile a = 
  Common.profile_code "show_xxx" (fun () -> show_or_not_cfile2 a)

let show_or_not_cfiles cfiles = List.iter show_or_not_cfile cfiles


let show_or_not_cocci2 coccifile isofile = 
  if !Flag_cocci.show_cocci then begin
    Common.pr2_xxxxxxxxxxxxxxxxx ();
    pr2 ("processing semantic patch file: " ^ coccifile);
    isofile +> (fun s -> pr2 ("with isos from: " ^ s));
    Common.pr2_xxxxxxxxxxxxxxxxx ();
    Common.command2 ("cat " ^ coccifile);
    pr2 "";
  end
let show_or_not_cocci a b = 
  Common.profile_code "show_xxx" (fun () -> show_or_not_cocci2 a b)


(* the output *)

let show_or_not_diff2 cfile outfile show_only_minus = 
  if !Flag_cocci.show_diff then begin
    match Common.fst(Compare_c.compare_default cfile outfile) with
      Compare_c.Correct -> () (* diff only in spacing, etc *)
    | _ ->
        (* may need --strip-trailing-cr under windows *)
        pr2 "diff = ";

        let line =
          match !Flag_parsing_c.diff_lines with
          | None ->   "diff -u -p " ^ cfile ^ " " ^ outfile
          | Some n -> "diff -U "^n^" -p "^cfile^" "^outfile in
        let xs =
          let res = Common.cmd_to_list line in
          match (!Flag.patch,res) with
        (* create something that looks like the output of patch *)
            (Some prefix,minus_file::plus_file::rest) ->
              let drop_prefix file =
                if prefix = ""
                then "/"^file
                else
                  (match Str.split (Str.regexp prefix) file with
                    [base_file] -> base_file
                  | _ -> failwith "prefix not found in the old file name") in
              let diff_line =
                match List.rev(Str.split (Str.regexp " ") line) with
                  new_file::old_file::cmdrev ->
                    if !Flag.sgrep_mode2
                    then
                      String.concat " "
                        (List.rev ("/tmp/nothing" :: old_file :: cmdrev))
                    else
                      let old_base_file = drop_prefix old_file in
                      String.concat " "
                        (List.rev
                           (("b"^old_base_file)::("a"^old_base_file)::cmdrev))
                | _ -> failwith "bad command" in
              let (minus_line,plus_line) =
                if !Flag.sgrep_mode2
                then (minus_file,plus_file)
                else
                  match (Str.split (Str.regexp "[ \t]") minus_file,
                         Str.split (Str.regexp "[ \t]") plus_file) with
                    ("---"::old_file::old_rest,"+++"::new_file::new_rest) ->
                      let old_base_file = drop_prefix old_file in
                      (String.concat " "
                         ("---"::("a"^old_base_file)::old_rest),
                       String.concat " "
                         ("+++"::("b"^old_base_file)::new_rest))
                  | (l1,l2) ->
                      failwith
                        (Printf.sprintf "bad diff header lines: %s %s"
                           (String.concat ":" l1) (String.concat ":" l2)) in
              diff_line::minus_line::plus_line::rest
          |     _ -> res in
        xs +> List.iter (fun s -> 
          if s =~ "^\\+" && show_only_minus
          then ()
          else pr s)
  end
let show_or_not_diff a b c  = 
  Common.profile_code "show_xxx" (fun () -> show_or_not_diff2 a b c)
    
    
(* the derived input *)
    
let show_or_not_ctl_tex2 astcocci ctls =
  if !Flag_cocci.show_ctl_tex then begin
    Ctltotex.totex ("/tmp/__cocci_ctl.tex") astcocci ctls;
    Common.command2 ("cd /tmp; latex __cocci_ctl.tex; " ^
                     "dvips __cocci_ctl.dvi -o __cocci_ctl.ps;" ^
                     "gv __cocci_ctl.ps &");
  end
let show_or_not_ctl_tex a b  = 
  Common.profile_code "show_xxx" (fun () -> show_or_not_ctl_tex2 a b)
    
    
    
let show_or_not_rule_name ast rulenb =
  if !Flag_cocci.show_ctl_text or !Flag.show_trying or
    !Flag_cocci.show_transinfo or !Flag_cocci.show_binding_in_out
  then
    begin
      let name =
        match ast with
          Ast_cocci.CocciRule (nm, (deps, drops, exists), x, _) -> nm
        | _ -> i_to_s rulenb in
      Common.pr_xxxxxxxxxxxxxxxxx ();
      pr (name ^ " = ");
      Common.pr_xxxxxxxxxxxxxxxxx ()
    end

let show_or_not_scr_rule_name rulenb =
  if !Flag_cocci.show_ctl_text or !Flag.show_trying or
    !Flag_cocci.show_transinfo or !Flag_cocci.show_binding_in_out
  then
    begin
      let name = i_to_s rulenb in
      Common.pr_xxxxxxxxxxxxxxxxx ();
      pr ("script rule " ^ name ^ " = ");
      Common.pr_xxxxxxxxxxxxxxxxx ()
    end

let show_or_not_ctl_text2 ctl ast rulenb =
  if !Flag_cocci.show_ctl_text then begin
    
    adjust_pp_with_indent (fun () -> 
      Format.force_newline();
      Pretty_print_cocci.print_plus_flag := true;
      Pretty_print_cocci.print_minus_flag := true;
      Pretty_print_cocci.unparse ast;
      );
    
    pr "CTL = ";
    let (ctl,_) = ctl in
    adjust_pp_with_indent (fun () -> 
      Format.force_newline();
      Pretty_print_engine.pp_ctlcocci 
        !Flag_cocci.show_mcodekind_in_ctl !Flag_cocci.inline_let_ctl ctl;
      );
    pr "";
  end
let show_or_not_ctl_text a b c =
      Common.profile_code "show_xxx" (fun () -> show_or_not_ctl_text2 a b c)



(* running information *)

let show_or_not_celem2 prelude celem = 
  if !Flag.show_trying then 
  (match celem with 
  | Ast_c.Definition ((funcs,_,_,_c),_) -> 
      pr2 (prelude ^ " function: " ^ funcs);
  | Ast_c.Declaration
      (Ast_c.DeclList ([(Some ((s, _),_), typ, sto, _local), _], _)) ->
      pr2 (prelude ^ " variable " ^ s);
  | _ -> 
      pr2 (prelude ^ " something else");
  )
let show_or_not_celem a b  = 
  Common.profile_code "show_xxx" (fun () -> show_or_not_celem2 a b)


let show_or_not_trans_info2 trans_info = 
  if !Flag_cocci.show_transinfo then begin
    if null trans_info then pr2 "transformation info is empty"
    else begin
      pr2 "transformation info returned:";
      let trans_info =
        List.sort (function (i1,_,_) -> function (i2,_,_) -> compare i1 i2)
          trans_info 
      in
      indent_do (fun () -> 
        trans_info +> List.iter (fun (i, subst, re) -> 
          pr2 ("transform state: " ^ (Common.i_to_s i));
          indent_do (fun () -> 
            adjust_pp_with_indent_and_header "with rule_elem: " (fun () -> 
              Pretty_print_cocci.print_plus_flag := true;
              Pretty_print_cocci.print_minus_flag := true;
              Pretty_print_cocci.rule_elem "" re;
            );
            adjust_pp_with_indent_and_header "with binding: " (fun () -> 
              Pretty_print_engine.pp_binding subst;
            );
          )
        );
      )
    end
  end
let show_or_not_trans_info a  = 
  Common.profile_code "show_xxx" (fun () -> show_or_not_trans_info2 a)



let show_or_not_binding2 s binding =
  if !Flag_cocci.show_binding_in_out then begin
    adjust_pp_with_indent_and_header ("binding " ^ s ^ " = ") (fun () -> 
      Pretty_print_engine.pp_binding binding
    )
  end
let show_or_not_binding a b  = 
  Common.profile_code "show_xxx" (fun () -> show_or_not_binding2 a b)



(*****************************************************************************)
(* Some  helper functions *)
(*****************************************************************************)

let worth_trying cfiles tokens = 
  (* drop the following line for a list of list by rules.  since we don't
     allow multiple minirules, all the tokens within a rule should be in
     a single CFG entity *)
  let tokens = Common.union_all tokens in
  if not !Flag_cocci.windows && not (null tokens)
  then
   (* could also modify the code in get_constants.ml *)
    let tokens = tokens +> List.map (fun s -> 
      match () with 
      | _ when s =~ "^[A-Za-z_][A-Za-z_0-9]*$" -> 
          "\\b" ^ s ^ "\\b"

      | _ when s =~ "^[A-Za-z_]" -> 
          "\\b" ^ s

      | _ when s =~ ".*[A-Za-z_]$" -> 
          s ^ "\\b"
      | _ -> s

    ) in
    let com = sprintf "egrep -q '(%s)' %s" (join "|" tokens) (join " " cfiles)
    in
    (match Sys.command com with
    | 0 (* success *) -> true
    | _ (* failure *) ->
        (if !Flag.show_misc
        then Printf.printf "grep failed: %s\n" com);
        false (* no match, so not worth trying *)
    )
  else true

let check_macro_in_sp_and_adjust tokens = 
  let tokens = Common.union_all tokens in
  tokens +> List.iter (fun s -> 
    if Hashtbl.mem !Parsing_hacks._defs s
    then begin
      pr2 "warning: macro in semantic patch was in macro definitions";
      pr2 ("disabling macro expansion for " ^ s);
      Hashtbl.remove !Parsing_hacks._defs s
    end
  )


let contain_loop gopt = 
  match gopt with
  | Some g -> 
      g#nodes#tolist +> List.exists (fun (xi, node) -> 
        Control_flow_c.extract_is_loop node
      )
  | None -> true (* means nothing, if no g then will not model check *)



let sp_contain_typed_metavar_z toplevel_list_list = 
  let bind x y = x or y in
  let option_default = false in
  let mcode _ _ = option_default in
  let donothing r k e = k e in

  let expression r k e =
    match Ast_cocci.unwrap e with
    | Ast_cocci.MetaExpr (_,_,_,Some t,_,_) -> true
    | Ast_cocci.MetaExpr (_,_,_,_,Ast_cocci.LocalID,_) -> true
    | _ -> k e 
  in

  let combiner = 
    Visitor_ast.combiner bind option_default
      mcode mcode mcode mcode mcode mcode mcode mcode mcode mcode mcode mcode
      mcode
      donothing donothing donothing donothing
      donothing expression donothing donothing donothing donothing donothing
      donothing donothing donothing donothing donothing 
  in
  toplevel_list_list +> 
    List.exists
    (function (nm,_,rule) ->
      (List.exists combiner.Visitor_ast.combiner_top_level rule))
    

let sp_contain_typed_metavar rules =
  sp_contain_typed_metavar_z 
    (List.map
       (function x ->
         match x with
           Ast_cocci.CocciRule (a,b,c,d) -> (a,b,c)
         | _ -> failwith "error in filter")
    (List.filter
       (function x ->
         match x with Ast_cocci.CocciRule _ -> true | _ -> false)
       rules))



(* finding among the #include the one that we need to parse
 * because they may contain useful type definition or because
 * we may have to modify them
 * 
 * For the moment we base in part our heuristic on the name of the file, e.g.
 * serio.c is related we think to #include <linux/serio.h> 
 *)

let includes_to_parse xs = 
  if !Flag_cocci.no_includes
  then []
  else
    xs +> List.map (fun (file, cs) -> 
      let dir = Common.dirname file in
      
      cs +> Common.map_filter (fun (c,_info_item) -> 
        match c with
        | Ast_c.Include ((x,ii),info_h_pos)  -> 
            (match x with
            | Ast_c.Local xs -> 
                let f = Filename.concat dir (Common.join "/" xs) in
              (* for our tests, all the files are flat in the current dir *)
                if not (Sys.file_exists f) && !Flag_cocci.relax_include_path
                then
                  let attempt2 = Filename.concat dir (Common.last xs) in
                  if not (Sys.file_exists f) && !Flag_cocci.all_includes
                  then Some (Filename.concat !Flag_cocci.include_path 
                               (Common.join "/" xs))
                  else Some attempt2
                else Some f
                    
            | Ast_c.NonLocal xs -> 
                if !Flag_cocci.all_includes ||
                Common.fileprefix (Common.last xs) = Common.fileprefix file
                then 
                  Some (Filename.concat !Flag_cocci.include_path 
                          (Common.join "/" xs))
                else None
            | Ast_c.Wierd _ -> None
                  )
        | _ -> None
              )
        )
      +> List.concat
      +> Common.uniq
      
let rec interpret_dependencies local global = function
    Ast_cocci.Dep s      -> List.mem s local
  | Ast_cocci.AntiDep s  ->
      (if !Flag_ctl.steps != None
      then failwith "steps and ! dependency incompatible");
      not (List.mem s local)
  | Ast_cocci.EverDep s  -> List.mem s global
  | Ast_cocci.NeverDep s ->
      (if !Flag_ctl.steps != None
      then failwith "steps and ! dependency incompatible");
      not (List.mem s global)
  | Ast_cocci.AndDep(s1,s2) ->
      (interpret_dependencies local global s1) &&
      (interpret_dependencies local global s2)
  | Ast_cocci.OrDep(s1,s2)  ->
      (interpret_dependencies local global s1) or
      (interpret_dependencies local global s2)
  | Ast_cocci.NoDep -> true
        
let rec print_dependencies local global =
  let seen = ref [] in
  let rec loop = function
      Ast_cocci.Dep s | Ast_cocci.AntiDep s ->
        if not (List.mem s !seen)
        then
          begin
            if List.mem s local
            then pr2 (s^" satisfied")
            else pr2 (s^" not satisfied");
            seen := s :: !seen
          end 
    | Ast_cocci.EverDep s | Ast_cocci.NeverDep s ->
        if not (List.mem s !seen)
        then
          begin
            if List.mem s global
            then pr2 (s^" satisfied")
            else pr2 (s^" not satisfied");
            seen := s :: !seen
          end
    | Ast_cocci.AndDep(s1,s2) ->
        print_dependencies local global s1;
        print_dependencies local global s2
    | Ast_cocci.OrDep(s1,s2)  ->
        print_dependencies local global s1;
        print_dependencies local global s2
    | Ast_cocci.NoDep -> () in
  loop
    
    
    
    
(* --------------------------------------------------------------------- *)
(* #include relative position in the file *)
(* --------------------------------------------------------------------- *)
    
(* compute the set of new prefixes
 * on 
 *  "a/b/x"; (* in fact it is now a list of string so  ["a";"b";"x"] *)
 *  "a/b/c/x";
 *  "a/x";
 *  "b/x";
 * it would give for the first element 
 *   ""; "a"; "a/b"; "a/b/x"
 * for the second
 *   "a/b/c/x"
 * 
 * update: if the include is inside a ifdef a put nothing. cf -test incl.
 * this is because we dont want code added inside ifdef.
 *)

let compute_new_prefixes xs = 
  xs +> Common.map_withenv (fun already xs -> 
    let subdirs_prefixes = Common.inits xs in
    let new_first = subdirs_prefixes +> List.filter (fun x -> 
      not (List.mem x already)
    )
    in
    new_first, 
    new_first @ already
  ) []
  +> fst


(* does via side effect on the ref in the Include in Ast_c *)
let rec update_include_rel_pos cs =
  let only_include = cs +> Common.map_filter (fun c -> 
    match c with 
    | Ast_c.Include ((x,_),(aref, inifdef)) ->
        (match x with
        | Ast_c.Wierd _ -> None
        | _ -> 
            if inifdef 
            then None
            else Some (x, aref)
        )
    | _ -> None
  )
  in
  let (locals, nonlocals) = 
    only_include +> Common.partition_either (fun (c, aref)  -> 
      match c with
      | Ast_c.Local x -> Left (x, aref)
      | Ast_c.NonLocal x -> Right (x, aref)
      | Ast_c.Wierd x -> raise Impossible
    ) in

  update_rel_pos_bis locals;
  update_rel_pos_bis nonlocals;
  cs
and update_rel_pos_bis xs = 
  let xs' = List.map fst xs in
  let the_first = compute_new_prefixes xs' in
  let the_last  = List.rev (compute_new_prefixes (List.rev xs')) in
  let merged = Common.zip xs (Common.zip the_first the_last) in
  merged +> List.iter (fun ((x, aref), (the_first, the_last)) -> 
    aref := Some 
      { 
        Ast_c.first_of = the_first;
        Ast_c.last_of = the_last;
      }
  )
        





(*****************************************************************************)
(* All the information needed around the C elements and Cocci rules *)
(*****************************************************************************)

type toplevel_c_info = { 
  ast_c: Ast_c.toplevel; (* contain refs so can be modified *)
  tokens_c: Parser_c.token list;
  fullstring: string;

  flow: Control_flow_c.cflow option; (* it's the "fixed" flow *)
  contain_loop: bool;
  
  env_typing_before: TAC.environment;
  env_typing_after:  TAC.environment;

  was_modified: bool ref;

  (* id: int *)
}

type toplevel_cocci_info_script_rule = {
  scr_ast_rule: string * (string * (string * string)) list * string;
  language: string;
  scr_dependencies: Ast_cocci.dependency;
  scr_ruleid: int;
  script_code: string;
}

type toplevel_cocci_info_cocci_rule = {
  ctl: Lib_engine.ctlcocci * (CCI.pred list list);
  ast_rule: Ast_cocci.rule;
  isexp: bool; (* true if + code is an exp, only for Flag.make_hrule *)

  rulename: string;
  dependencies: Ast_cocci.dependency;
  (* There are also some hardcoded rule names in parse_cocci.ml:
   *  let reserved_names = ["all";"optional_storage";"optional_qualifier"] 
   *)
  dropped_isos: string list;
  free_vars:  Ast_cocci.meta_name list;
  negated_pos_vars:  Ast_cocci.meta_name list;
  used_after: Ast_cocci.meta_name list;
  positions: Ast_cocci.meta_name list;

  ruleid: int;

  was_matched: bool ref;
}

type toplevel_cocci_info = 
    ScriptRuleCocciInfo of toplevel_cocci_info_script_rule
  | CocciRuleCocciInfo of toplevel_cocci_info_cocci_rule

type kind_file = Header | Source 
type file_info = { 
  fname : string;
  full_fname : string;
  was_modified_once: bool ref;
  asts: toplevel_c_info list;
  fpath : string;
  fkind : kind_file;
}

let g_contain_typedmetavar = ref false 


let last_env_toplevel_c_info xs =
  (Common.last xs).env_typing_after

let concat_headers_and_c ccs = 
  (List.concat (ccs +> List.map (fun x -> x.asts)))

let for_unparser xs = 
  xs +> List.map (fun x -> 
    (x.ast_c, (x.fullstring, x.tokens_c)), Unparse_c2.PPviastr
  )

(* --------------------------------------------------------------------- *)
let prepare_cocci ctls free_var_lists negated_pos_lists
    used_after_lists positions_list astcocci = 

  let gathered = Common.index_list_1
      (zip (zip (zip (zip (zip ctls astcocci) free_var_lists)
                   negated_pos_lists) used_after_lists) positions_list)
  in
  gathered +> List.map 
    (fun ((((((ctl_toplevel_list,ast),free_var_list),negated_pos_list),
           used_after_list),
           positions_list),rulenb) -> 
      
      let is_script_rule r =
        match r with Ast_cocci.ScriptRule _ -> true | _ -> false in

      if not (List.length ctl_toplevel_list = 1) && not (is_script_rule ast)
      then failwith "not handling multiple minirules";

      match ast with
        Ast_cocci.ScriptRule (lang,deps,mv,code) ->
          let r = 
          {
            scr_ast_rule = (lang, mv, code);
            language = lang;
            scr_dependencies = deps;
            scr_ruleid = rulenb;
            script_code = code;
          }
          in ScriptRuleCocciInfo r
      | Ast_cocci.CocciRule
          (rulename,(dependencies,dropped_isos,z),restast,isexp) ->
          CocciRuleCocciInfo (
          {
            ctl = List.hd ctl_toplevel_list;
            ast_rule = ast;
            isexp = List.hd isexp;
            rulename = rulename;
            dependencies = dependencies;
            dropped_isos = dropped_isos;
            free_vars = List.hd free_var_list;
            negated_pos_vars = List.hd negated_pos_list;
            used_after = List.hd used_after_list;
            positions = List.hd positions_list;
            ruleid = rulenb;
            was_matched = ref false;
          })
    )


(* --------------------------------------------------------------------- *)

let build_info_program cprogram env = 
  let (cs, parseinfos) = Common.unzip cprogram in
  let (cs, envs) =
    Common.unzip (TAC.annotate_program env !g_contain_typedmetavar cs) in

  zip (zip cs parseinfos) envs +> List.map (fun ((c, parseinfo), (enva,envb))->
    let (fullstr, tokens) = parseinfo in

    let flow = 
      ast_to_flow_with_error_messages c +> Common.map_option (fun flow -> 
        let flow = Ast_to_flow.annotate_loop_nodes flow in

        (* remove the fake nodes for julia *)
        let fixed_flow = CCI.fix_flow_ctl flow in

        if !Flag_cocci.show_flow then print_flow fixed_flow;
        if !Flag_cocci.show_before_fixed_flow then print_flow flow;

        fixed_flow
      )
    in

    {
      ast_c = c; (* contain refs so can be modified *)
      tokens_c =  tokens;
      fullstring = fullstr;

      flow = flow;

      contain_loop = contain_loop flow;
  
      env_typing_before = enva;
      env_typing_after = envb;

      was_modified = ref false;
    }
  )



(* Optimisation. Try not unparse/reparse the whole file when have modifs  *)
let rebuild_info_program cs file isexp = 
  cs +> List.map (fun c ->
    if !(c.was_modified)
    then
      (match !Flag.make_hrule with
        Some dir ->
          Unparse_hrule.pp_program (c.ast_c, (c.fullstring, c.tokens_c))
            dir file isexp;
          []
      | None ->
          let file = Common.new_temp_file "cocci_small_output" ".c" in
          cfile_of_program 
            [(c.ast_c, (c.fullstring, c.tokens_c)), Unparse_c2.PPnormal] 
            file;
          
          (* Common.command2 ("cat " ^ file); *)
          let cprogram = cprogram_of_file file in
          let xs = build_info_program cprogram c.env_typing_before in
          
          (* TODO: assert env has not changed,
           * if yes then must also reparse what follows even if not modified.
           * Do that only if contain_typedmetavar of course, so good opti.
          *)
          (* Common.list_init xs *) (* get rid of the FinalDef *)
          xs)
    else [c]
  ) +> List.concat


let rebuild_info_c_and_headers ccs isexp =
  ccs +> List.iter (fun c_or_h -> 
    if c_or_h.asts +> List.exists (fun c -> !(c.was_modified))
    then c_or_h.was_modified_once := true;
  );
  ccs +> List.map (fun c_or_h -> 
    { c_or_h with
      asts = rebuild_info_program c_or_h.asts c_or_h.full_fname isexp }
  )







let prepare_c files = 
  let cprograms = List.map cprogram_of_file_cached files in
  let includes = includes_to_parse (zip files cprograms) in

  (* todo?: may not be good to first have all the headers and then all the c *)
  let all = 
    (includes +> List.map (fun hpath -> Right hpath))
    ++
    ((zip files cprograms) +> List.map (fun (file, asts) -> Left (file, asts)))
  in

  let env = ref TAC.initial_env in

  let ccs = all +> Common.map_filter (fun x -> 
    match x with 
    | Right hpath -> 
        if not (Common.lfile_exists hpath) 
        then begin 
          pr2 ("TYPE: header " ^ hpath ^ " not found"); 
          None 
        end
        else 
          let h_cs = cprogram_of_file_cached hpath in
          let info_h_cs = build_info_program h_cs !env in
          env := 
            if null info_h_cs
            then !env
            else last_env_toplevel_c_info info_h_cs
          ;
          Some { 
            fname = Common.basename hpath;
            full_fname = hpath;
            asts = info_h_cs;
            was_modified_once = ref false;
            fpath = hpath;
            fkind = Header;
          }
    | Left (file, cprogram) -> 
        (* todo?: don't update env ? *)
        let cs = build_info_program cprogram !env in
        (* we do that only for the c, not for the h *)
        ignore(update_include_rel_pos (cs +> List.map (fun x -> x.ast_c)));
        Some { 
          fname = Common.basename file;
          full_fname = file;
          asts = cs;
          was_modified_once = ref false;
          fpath = file;
          fkind = Source;
        }
  ) 
  in
  ccs        


(*****************************************************************************)
(* Processing the ctls and toplevel C elements *)
(*****************************************************************************)

(* The main algorithm =~
 * The algorithm is roughly: 
 *  for_all ctl rules in SP
 *   for_all minirule in rule (no more)
 *    for_all binding (computed during previous phase)
 *      for_all C elements
 *         match control flow of function vs minirule 
 *         with the binding and update the set of possible 
 *         bindings, and returned the possibly modified function.
 *   pretty print modified C elements and reparse it.
 *
 * 
 * On ne prends que les newbinding ou returned_any_state est vrai.
 * Si ca ne donne rien, on prends ce qu'il y avait au depart.
 * Mais au nouveau depart de quoi ?  
 * - si ca donne rien apres avoir traité toutes les fonctions avec ce binding ?
 * - ou alors si ca donne rien, apres avoir traité toutes les fonctions 
 *   avec tous les bindings du round d'avant ?
 * 
 * Julia pense qu'il faut prendre la premiere solution.
 * Example: on a deux environnements candidats, E1 et E2 apres avoir traité
 * la regle ctl 1. On arrive sur la regle ctl 2.
 * E1 ne donne rien pour la regle 2, on garde quand meme E1 pour la regle 3.
 * E2 donne un match a un endroit et rend E2' alors on utilise ca pour
 * la regle 3.
 * 
 * I have not to look at used_after_list to decide to restart from
 * scratch. I just need to look if the binding list is empty.
 * Indeed, let's suppose that a SP have 3 regions/rules. If we
 * don't find a match for the first region, then if this first
 * region does not bind metavariable used after, that is if
 * used_after_list is empty, then mysat(), even if does not find a
 * match, will return a Left, with an empty transformation_info,
 * and so current_binding will grow. On the contrary if the first
 * region must bind some metavariables used after, and that we
 * dont find any such region, then mysat() will returns lots of
 * Right, and current_binding will not grow, and so we will have
 * an empty list of binding, and we will catch such a case. 
 *
 * opti: julia says that because the binding is
 * determined by the used_after_list, the items in the list
 * are kind of sorted, so could optimise the insert_set operations.
 *)


(* r(ule), c(element in C code), e(nvironment) *)

let rec apply_python_rule r cache newes e rules_that_have_matched
    rules_that_have_ever_matched =
  show_or_not_scr_rule_name r.scr_ruleid;
  if not(interpret_dependencies rules_that_have_matched
           !rules_that_have_ever_matched r.scr_dependencies)
  then
    begin
      if !Flag.show_misc
      then
        begin
          pr2 ("dependencies for script not satisfied:");
          print_dependencies rules_that_have_matched
            !rules_that_have_ever_matched r.scr_dependencies;
          show_or_not_binding "in environment" e
        end;
      (cache, (e, rules_that_have_matched)::newes)
    end
  else
    begin
      let (_, mv, _) = r.scr_ast_rule in
      show_or_not_binding "in" e;
      if List.for_all (Pycocci.contains_binding e) mv
      then
        begin
          let relevant_bindings =
            List.filter
              (function ((re,rm),_) ->
                List.exists (function (_,(r,m)) -> r = re && m = rm) mv)
              e in
          let new_cache =
            if List.mem relevant_bindings cache
            then cache
            else
              begin
                Pycocci.build_classes (List.map (function (x,y) -> x) e);
                Pycocci.construct_variables mv e;
                let _ = Pycocci.pyrun_simplestring
                  ("import coccinelle\nfrom coccinelle "^
                   "import *\ncocci = Cocci()\n" ^
                   r.script_code) in
                relevant_bindings :: cache
              end in
          if !Pycocci.inc_match
          then (new_cache, (e, rules_that_have_matched)::newes)
          else (new_cache, newes)
        end
      else (cache, (e, rules_that_have_matched)::newes)
    end

and apply_cocci_rule r rules_that_have_ever_matched es ccs =
  Common.profile_code r.rulename (fun () -> 
    show_or_not_rule_name r.ast_rule r.ruleid;
    show_or_not_ctl_text r.ctl r.ast_rule r.ruleid;

    let reorganized_env =
      reassociate_positions r.free_vars r.negated_pos_vars !es in

    (* looping over the environments *)
    let (_,newes (* envs for next round/rule *)) =
      List.fold_left
        (function (cache,newes) ->
          function ((e,rules_that_have_matched),relevant_bindings) ->
            if not(interpret_dependencies rules_that_have_matched
                     !rules_that_have_ever_matched r.dependencies)
            then
              begin
                if !Flag.show_misc
                then
                  begin
                    pr2
                      ("dependencies for rule "^r.rulename^" not satisfied:");
                    print_dependencies rules_that_have_matched
                      !rules_that_have_ever_matched r.dependencies;
                    show_or_not_binding "in environment" e
                  end;
                (cache,
                 Common.union_set newes
                   [(e +> List.filter (fun (s,v) -> List.mem s r.used_after),
                     rules_that_have_matched)])
              end
            else
              let new_bindings =
                try List.assoc relevant_bindings cache
                with
                  Not_found ->
                    begin
                      show_or_not_binding "in" e;
                      show_or_not_binding "relevant in" relevant_bindings;

                      let children_e = ref [] in
      
                      (* looping over the functions and toplevel elements in
                         .c and .h *)
                      concat_headers_and_c !ccs +> List.iter (fun c -> 
                        if c.flow <> None 
                        then
                        (* does also some side effects on c and r *)
                          let processed =
                            process_a_ctl_a_env_a_toplevel r relevant_bindings
                              c in
                          match processed with
                          | None -> ()
                          | Some newbindings -> 
                              newbindings +> List.iter (fun newbinding -> 
                                children_e :=
                                  Common.insert_set newbinding !children_e)
                                ); (* end iter cs *)

                      !children_e
                    end in
              let old_bindings_to_keep =
                Common.nub
                  (e +> List.filter (fun (s,v) -> List.mem s r.used_after)) in
              let new_e =
                if null new_bindings
                then
                  begin
                  (*use the old bindings, specialized to the used_after_list*)
                    if !Flag_ctl.partial_match
                    then
                      printf
                        "Empty list of bindings, I will restart from old env";
                    [(old_bindings_to_keep,rules_that_have_matched)]
                  end
                else
                (* combine the new bindings with the old ones, and
                   specialize to the used_after_list *)
                  let old_variables = List.map fst old_bindings_to_keep in
                  (* have to explicitly discard the inherited variables
                     because we want the inherited value of the positions
                     variables not the extended one created by
                     reassociate_positions. want to reassociate freshly
                     according to the free variables of each rule. *)
                  let new_bindings_to_add =
                    Common.nub
                      (new_bindings +>
                       List.map
                         (List.filter
                            (fun (s,v) ->
                              List.mem s r.used_after &&
                              not (List.mem s old_variables)))) in
                  List.map
                    (function new_binding_to_add ->
                      (Common.union_set
                         old_bindings_to_keep new_binding_to_add,
                       r.rulename::rules_that_have_matched))
                    new_bindings_to_add in
              ((relevant_bindings,new_bindings)::cache,
               Common.union_set new_e newes))
        ([],[]) reorganized_env in (* end iter es *)
    if !(r.was_matched)
    then Common.push2 r.rulename rules_that_have_ever_matched;

    es := newes;

    (* apply the tagged modifs and reparse *)
    if not !Flag.sgrep_mode2
    then ccs := rebuild_info_c_and_headers !ccs r.isexp
  )

and bigloop2 rs ccs = 
  let es = ref [(Ast_c.emptyMetavarsBinding,[])] in
  let ccs = ref ccs in
  let rules_that_have_ever_matched = ref [] in

  (* looping over the rules *)
  rs +> List.iter (fun r -> 
    match r with
      ScriptRuleCocciInfo r -> 
        if !Flag_cocci.show_ctl_text then begin
          Common.pr_xxxxxxxxxxxxxxxxx ();
          pr ("script: " ^ r.language);
          Common.pr_xxxxxxxxxxxxxxxxx ();
          
          adjust_pp_with_indent (fun () -> 
            Format.force_newline();
            let (l,mv,code) = r.scr_ast_rule in
            let deps = r.scr_dependencies in
            Pretty_print_cocci.unparse
              (Ast_cocci.ScriptRule (l,deps,mv,code)));
        end;

        if !Flag.show_misc then print_endline "RESULT =";

        let (_, newes) =
          List.fold_left
            (function (cache, newes) ->
              function (e, rules_that_have_matched) ->
                match r.language with
                  "python" ->
                    apply_python_rule r cache newes e rules_that_have_matched
                      rules_that_have_ever_matched
                | "test" ->
                    concat_headers_and_c !ccs +> List.iter (fun c -> 
                      if c.flow <> None 
                      then
                        Printf.printf "Flow: %s\r\nFlow!\r\n%!" c.fullstring);
                    (cache, newes)
                | _ ->
                    Printf.printf "Unknown language: %s\n" r.language;
                    (cache, newes)
                      )
            ([],[]) !es in

        es := newes;
    | CocciRuleCocciInfo r ->
        apply_cocci_rule r rules_that_have_ever_matched es ccs);

  if !Flag.sgrep_mode2
  then begin
    (* sgrep can lead to code that is not parsable, but we must
     * still call rebuild_info_c_and_headers to pretty print the 
     * action (MINUS), so that later the diff will show what was
     * matched by sgrep. But we don't want the parsing error message
     * hence the following flag setting. So this code propably
     * will generate a NotParsedCorrectly for the matched parts
     * and the very final pretty print and diff will work
     *)
    Flag_parsing_c.verbose_parsing := false;
    ccs := rebuild_info_c_and_headers !ccs false
  end;
  !ccs (* return final C asts *)

and reassociate_positions free_vars negated_pos_vars envs =
  (* issues: isolate the bindings that are relevant to a given rule.
     separate out the position variables
     associate all of the position variables for a given set of relevant
     normal variable bindings with each set of relevant normal variable
     bindings.  Goal: if eg if@p (E) matches in two places, then both inherited
     occurrences of E should see both bindings of p, not just its own.
     Otherwise, a position constraint for something that matches in two
     places will never be useful, because the position can always be
     different from the other one. *)
   let relevant =
     List.map
       (function (e,_) ->
         List.filter (function (x,_) -> List.mem x free_vars) e)
       envs in
   let splitted_relevant =
     (* separate the relevant variables into the non-position ones and the
        position ones *)
     List.map
       (function r ->
         List.fold_left
           (function (non_pos,pos) ->
             function (v,_) as x ->
               if List.mem v negated_pos_vars
               then (non_pos,x::pos)
               else (x::non_pos,pos))
           ([],[]) r)
       relevant in
   let splitted_relevant =
     List.map
       (function (non_pos,pos) ->
         (List.sort compare non_pos,List.sort compare pos))
       splitted_relevant in
   let non_poss =
     List.fold_left
       (function non_pos ->
         function (np,_) ->
           if List.mem np non_pos then non_pos else np::non_pos)
       [] splitted_relevant in
   let extended_relevant =
     (* extend the position variables with the values found at other identical
        variable bindings *)
     List.map
       (function non_pos ->
         let others =
           List.filter
             (function (other_non_pos,other_pos) ->
               (* do we want equal? or just somehow compatible? eg non_pos
               binds only E, but other_non_pos binds both E and E1 *)
               non_pos = other_non_pos)
             splitted_relevant in
         (non_pos,
          List.sort compare
            (non_pos @
             (combine_pos negated_pos_vars
                (List.map (function (_,x) -> x) others)))))
       non_poss in
   List.combine envs
     (List.map (function (non_pos,_) -> List.assoc non_pos extended_relevant)
        splitted_relevant)

and combine_pos negated_pos_vars others =
  List.map
    (function posvar ->
      (posvar,
       Ast_c.MetaPosValList
         (List.sort compare
            (List.fold_left
               (function positions ->
                 function other_list ->
                   try
                     match List.assoc posvar other_list with
                       Ast_c.MetaPosValList l1 ->
                         Common.union_set l1 positions
                     | _ -> failwith "bad value for a position variable"
                   with Not_found -> positions)
               [] others))))
    negated_pos_vars

and bigloop a b = 
  Common.profile_code "bigloop" (fun () -> bigloop2 a b)





(* does side effects on C ast and on Cocci info rule *)
and process_a_ctl_a_env_a_toplevel2 r e c = 
 indent_do (fun () -> 
  show_or_not_celem "trying" c.ast_c;
  let (trans_info, returned_any_states, newbindings) = 
    Common.save_excursion Flag_ctl.loop_in_src_code (fun () -> 
      Flag_ctl.loop_in_src_code := !Flag_ctl.loop_in_src_code||c.contain_loop;
      
      (***************************************)
      (* !Main point! The call to the engine *)
      (***************************************)
      let model_ctl  = CCI.model_for_ctl r.dropped_isos (Common.some c.flow) e
      in CCI.mysat model_ctl r.ctl (r.used_after, e)
    ) 
  in
  if not returned_any_states 
  then None
  else begin
    show_or_not_celem "found match in" c.ast_c;
    show_or_not_trans_info trans_info;
    List.iter (show_or_not_binding "out") newbindings;    

    r.was_matched := true;

    if not (null trans_info)
    then begin
      c.was_modified := true;
      try 
        (* les "more than one var in a decl" et "already tagged token"
         * font crasher coccinelle. Si on a 5 fichiers, donc on a 5
         * failed. Le try limite le scope des crashes pendant la
         * trasformation au fichier concerne. *)

        (* modify ast via side effect *)
        ignore(Transformation3.transform r.rulename r.dropped_isos
                  trans_info (Common.some c.flow));
      with Timeout -> raise Timeout | UnixExit i -> raise (UnixExit i)
    end;

    Some newbindings
  end
 )
   
and process_a_ctl_a_env_a_toplevel  a b c = 
  Common.profile_code "process_a_ctl_a_env_a_toplevel" 
    (fun () -> process_a_ctl_a_env_a_toplevel2 a b c)
   


(*****************************************************************************)
(* The main function *)
(*****************************************************************************)

let full_engine2 (coccifile, isofile) cfiles = 

  show_or_not_cfiles  cfiles;
  show_or_not_cocci   coccifile isofile;
  Pycocci.set_coccifile coccifile;

  let isofile = 
    if not (Common.lfile_exists isofile)
    then begin 
      pr2 ("warning: Can't find default iso file: " ^ isofile);
      None
    end
    else Some isofile
  in

  (* useful opti when use -dir *)
  let (astcocci,free_var_lists,negated_pos_lists,used_after_lists,
       positions_lists,toks,_) = 
      sp_of_file coccifile isofile
  in
  let ctls = 
    Common.memoized _hctl (coccifile, isofile) (fun () -> 
      ctls_of_ast  astcocci used_after_lists positions_lists)
  in

  let contain_typedmetavar = sp_contain_typed_metavar astcocci in

  (* optimisation allowing to launch coccinelle on all the drivers *)
  if !Flag_cocci.worth_trying_opt && not (worth_trying cfiles toks)
  then begin 
    pr2 ("not worth trying:" ^ Common.join " " cfiles);
    cfiles +> List.map (fun s -> s, None)
  end
  else begin

    if !Flag.show_misc then Common.pr_xxxxxxxxxxxxxxxxx();
    if !Flag.show_misc then pr "let's go";
    if !Flag.show_misc then Common.pr_xxxxxxxxxxxxxxxxx();

    g_contain_typedmetavar := contain_typedmetavar;

    check_macro_in_sp_and_adjust toks;

    let cocci_infos =
      prepare_cocci ctls free_var_lists negated_pos_lists
        used_after_lists positions_lists astcocci in
    let c_infos  = prepare_c cfiles in

    show_or_not_ctl_tex astcocci ctls;

    (* ! the big loop ! *)
    let c_infos' = bigloop cocci_infos c_infos in

    if !Flag.show_misc then Common.pr_xxxxxxxxxxxxxxxxx ();
    if !Flag.show_misc then pr "Finished";
    if !Flag.show_misc then Common.pr_xxxxxxxxxxxxxxxxx();

    c_infos' +> List.map (fun c_or_h -> 
      if !(c_or_h.was_modified_once)
      then begin
        let outfile = Common.new_temp_file "cocci-output" ("-" ^ c_or_h.fname) 
        in

        if c_or_h.fkind = Header 
        then pr2 ("a header file was modified: " ^ c_or_h.fname);

        (* and now unparse everything *)
        cfile_of_program (for_unparser c_or_h.asts) outfile;

        let show_only_minus = !Flag.sgrep_mode2 in
        show_or_not_diff c_or_h.fpath outfile show_only_minus;

        (c_or_h.fpath, 
        if !Flag.sgrep_mode2 then None else Some outfile
        )
      end
      else 
        (c_or_h.fpath, None)
    );
  end

let full_engine a b = 
  Common.profile_code "full_engine" (fun () -> full_engine2 a b)


(*****************************************************************************)
(* check duplicate from result of full_engine *)
(*****************************************************************************)

let check_duplicate_modif2 xs = 
  (* opti: let groups = Common.groupBy (fun (a,resa) (b,resb) -> a =$= b) xs *)
  pr2 ("Check duplication for " ^ i_to_s (List.length xs) ^ " files");
  let groups = Common.group_assoc_bykey_eff xs in
  groups +> Common.map_filter (fun (file, xs) -> 
    match xs with
    | [] -> raise Impossible
    | [res] -> Some (file, res)
    | res::xs -> 
        match res with 
        | None -> 
            if not (List.for_all (fun res2 -> res2 = None) xs)
            then begin
              pr2 ("different modification result for " ^ file);
              None
            end
            else Some (file, None)
        | Some res -> 
            if not(List.for_all (fun res2 -> 
              match res2 with
              | None -> false
              | Some res2 -> 
                  let diff = Common.cmd_to_list ("diff -u -b -B "^res^" "^res2)
                  in
                  null diff
            ) xs) then begin
              pr2 ("different modification result for " ^ file);
              None
            end
            else Some (file, Some res)
            
        
  )
let check_duplicate_modif a = 
  Common.profile_code "check_duplicate" (fun () -> check_duplicate_modif2 a)