From bf770d92402fbdfe1ea601db1d97bd888571b7e2 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 9 Dec 2019 18:09:07 +0100
Subject: [PATCH] gnu: r-metap: Update to 1.2.

* gnu/packages/cran.scm (r-metap): Move this from here...
* gnu/packages/bioconductor.scm (r-metap): ...to here and update to 1.2.
[propagated-inputs]: Add r-mutoss and r-tfisher.
---
 gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
 gnu/packages/cran.scm         | 25 -------------------------
 2 files changed, 29 insertions(+), 25 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 733d4ec956..e584a7bced 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3072,6 +3072,35 @@ are standardized and usable by the accompanying mutossGUI package.")
     ;; Any version of the GPL.
     (license (list license:gpl2+ license:gpl3+))))
 
+;; This is a CRAN package, but it depends on mutoss, which depends on multtest
+;; from Bioconductor, so we put it here.
+(define-public r-metap
+  (package
+    (name "r-metap")
+    (version "1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "metap" version))
+       (sha256
+        (base32
+         "0pfbcixjrzx81l9wqhlp55khg9k63zf8pvg2n39c19akr4ppzhvf"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-lattice" ,r-lattice)
+       ("r-mutoss" ,r-mutoss)
+       ("r-rdpack" ,r-rdpack)
+       ("r-tfisher" ,r-tfisher)))
+    (home-page "http://www.dewey.myzen.co.uk/meta/meta.html")
+    (synopsis "Meta-analysis of significance values")
+    (description
+     "The canonical way to perform meta-analysis involves using effect sizes.
+When they are not available this package provides a number of methods for
+meta-analysis of significance values including the methods of Edgington,
+Fisher, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate
+published results; and a routine for graphical display.")
+    (license license:gpl2)))
+
 (define-public r-triform
   (package
     (name "r-triform")
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8ece8476d3..11d254001f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4123,31 +4123,6 @@ functions to compile LaTeX documents, and install missing LaTeX packages
 automatically.")
     (license license:expat)))
 
-(define-public r-metap
-  (package
-    (name "r-metap")
-    (version "1.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "metap" version))
-       (sha256
-        (base32
-         "10kv7z8pik5iy374h399vws0ldf41y2nczlwh8axqf9dcwl084i0"))))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-lattice" ,r-lattice)
-       ("r-rdpack" ,r-rdpack)))
-    (home-page "http://www.dewey.myzen.co.uk/meta/meta.html")
-    (synopsis "Meta-analysis of significance values")
-    (description
-     "The canonical way to perform meta-analysis involves using effect sizes.
-When they are not available this package provides a number of methods for
-meta-analysis of significance values including the methods of Edgington,
-Fisher, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate
-published results; and a routine for graphical display.")
-    (license license:gpl2)))
-
 (define-public r-network
   (package
     (name "r-network")
-- 
2.20.1