From 41aab7d186d36876c3ad8202e4d78313235998d3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 29 Mar 2019 14:57:23 +0100 Subject: [PATCH] gnu: Add r-bacon. * gnu/packages/bioconductor.scm (r-bacon): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2bb0e8509c..48c6009864 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3159,3 +3159,28 @@ convenience of viewing and sharing with other researchers. Additionally, abseqR extends abseqPy to compare multiple repertoire analyses and perform further downstream analysis on its output.") (license license:gpl3))) + +(define-public r-bacon + (package + (name "r-bacon") + (version "1.10.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "bacon" version)) + (sha256 + (base32 + "1pd3p1cfggiy08458vplsy3s1zm5jqqcwrv4fks8ra2kf97j38df")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocparallel" ,r-biocparallel) + ("r-ellipse" ,r-ellipse) + ("r-ggplot2" ,r-ggplot2))) + (home-page "https://bioconductor.org/packages/bacon/") + (synopsis "Controlling bias and inflation in association studies") + (description + "Bacon can be used to remove inflation and bias often observed in +epigenome- and transcriptome-wide association studies. To this end bacon +constructs an empirical null distribution using a Gibbs Sampling algorithm by +fitting a three-component normal mixture on z-scores.") + (license license:gpl2+))) -- 2.20.1